RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10639
(189 letters)
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function
prediction only].
Length = 351
Score = 44.7 bits (105), Expect = 1e-05
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCS 110
YKTE+ RS C+Y ++ FAHS H +Y+T + + G Y RC
Sbjct: 113 YKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCC 172
Query: 111 FIH 113
FI
Sbjct: 173 FIS 175
Score = 39.3 bits (91), Expect = 7e-04
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRH--YRYRTRLCRNYHHNGVCNYGTR 108
++TE C + E C YG RC F H + Y CR G G
Sbjct: 272 FRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGA 331
Query: 109 CSFIH 113
Sbjct: 332 VCKSF 336
Score = 36.6 bits (84), Expect = 0.005
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 54 ELCRS--LEGYRP-CQYGERCRFA---HSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGT 107
ELC S +G P G +C+FA H + EL+ + +RT C N+ +G C YG
Sbjct: 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGL 290
Query: 108 RCSFIH 113
RC F H
Sbjct: 291 RCCFKH 296
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and
similar).
Length = 27
Score = 39.1 bits (92), Expect = 3e-05
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 89 YRTRLCRNYHHNGVCNYGTRCSFIH 113
Y+T LCR + G C YG RC F H
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAH 25
Score = 36.8 bits (86), Expect = 2e-04
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 51 YKTELCRSLEGYRPCQYGERCRFAHSV 77
YKTELCR C+YG+RC+FAH
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAHGQ 27
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger.
Length = 27
Score = 33.4 bits (77), Expect = 0.003
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 88 RYRTRLCRNYHHNGVCNYGTRCSFIH 113
+Y+T LC+ + G C G RC F H
Sbjct: 1 KYKTELCKFFK-RGYCPRGDRCKFAH 25
Score = 30.7 bits (70), Expect = 0.033
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 50 RYKTELCRS-LEGYRPCQYGERCRFAHS 76
+YKTELC+ GY C G+RC+FAH
Sbjct: 1 KYKTELCKFFKRGY--CPRGDRCKFAHP 26
>gnl|CDD|149823 pfam08882, Acetone_carb_G, Acetone carboxylase gamma subunit.
Acetone carboxylase is the key enzyme of bacterial
acetone metabolism, catalyzing the condensation of
acetone and CO(2) to form acetoacetate.
Length = 106
Score = 28.8 bits (65), Expect = 0.61
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 24 HDRGPEDIHRPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRP- 82
+ R P +IHR I Y F P E R E Y P C H VE L P
Sbjct: 39 YVRDPREIHREIIRY----PFTFAP---DPEWQRIREYYCP-----GCGTLHEVEYLPPG 86
Query: 83 -PVRH 86
P H
Sbjct: 87 HPPIH 91
>gnl|CDD|226111 COG3583, COG3583, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 309
Score = 29.8 bits (67), Expect = 0.71
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 149 SRIQSGSSCSSSWSSASNAS 168
SR S SS S+ SSASN S
Sbjct: 290 SRGSSASSSKSTGSSASNTS 309
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 30.2 bits (67), Expect = 0.79
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 127 REIHGDIQETRDIPGAATRGDRSRIQSGSSCSSSWSSASNASYSPGWSTASSKT 180
R+ D R GAA G R I +G S SSS SS+S++S SP + S T
Sbjct: 1787 RQSRRDSVPVRRRSGAANCGGRWMISAGRSSSSSSSSSSSSSSSPSSRPSRSAT 1840
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 29.0 bits (64), Expect = 1.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 151 IQSGSSCSSSWSSASNASYSPGWSTASSKT 180
IQSGS +S SS+S S S ST S+ +
Sbjct: 98 IQSGSGSASGNSSSSANSTSNSNSTTSNNS 127
>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated
protein. Members of this protein family are
uncharacterized and contain two copies of the cyclic
nucleotide-binding domain pfam00027. Members are
restricted to select cyanobacteria but are found
regularly in association with a transport operon that,
in turn, is associated with the production of putative
bacteriocins. The models describing the transport operon
are TIGR03794, TIGR03796, and TIGR03797.
Length = 317
Score = 28.7 bits (64), Expect = 1.9
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 111 FIHRVPGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQSGS 155
+HR G + +P++K I G++ E D+ G ++ +G+
Sbjct: 127 QLHRRNGADSEPLRKVLFIFGELHE-SDVAWMMASGTPQKLPAGT 170
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 28.5 bits (63), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 89 YRTRLCRNYHHNGVCNYGTRCSFIH 113
+ +C++Y G C YG C F+H
Sbjct: 139 TQPDVCKDYKETGYCGYGDSCKFLH 163
>gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building blocks for
antibiotics, herbicides, and drugs. NAAAR is a member of
the enolase superfamily, characterized by the presence
of an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 354
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 116 PGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQ 152
PG +V+P+K RE DI D A T D ++
Sbjct: 162 PGWDVEPLKAVRERFPDIPLMADANSAYTLADIPLLK 198
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 27.9 bits (63), Expect = 3.6
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 29 EDIHRPIYPYQESDRFLLDPI-RYKTELCRSLEGYRP--------CQYGERCRFAHSV-E 78
E P +PY R LL+ + R L + G P C++ RC +A
Sbjct: 240 EIFKNPKHPYT---RGLLNSLPRLGERL-PPIPGSPPSLLNPPKGCRFHPRCPYAMERCR 295
Query: 79 ELRPPVRHYRYRTRL-CRNY 97
E PP+R ++ C Y
Sbjct: 296 EEEPPLRELGGGHKVRCWLY 315
>gnl|CDD|220010 pfam08768, DUF1794, Domain of unknown function (DUF1794). This
domain forms a beta barrel structure but the function
is unknown. The GO annotation for this protein
indicates that the protein has a function in nematode
larval development and has a positive regulation on
growth rate.
Length = 155
Score = 27.2 bits (61), Expect = 4.3
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 63 RPCQYGERCRFAHSVEELRPPVRHYRYRTRL 93
P YGE F+H P Y RT
Sbjct: 25 EPFTYGEEIEFSHD----GRPFLLYGSRTWA 51
>gnl|CDD|223879 COG0809, QueA,
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
(queuine synthetase) [Translation, ribosomal structure
and biogenesis].
Length = 348
Score = 27.2 bits (61), Expect = 5.5
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 22 EFHDRGPEDI--------HRPIYPYQESDRFLLDPIRYKT 53
EF G + P+ PY + LD RY+T
Sbjct: 130 EFDYEGIFSLLELLEKYGEMPLPPYIKRKLDELDRDRYQT 169
>gnl|CDD|237044 PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 272
Score = 27.1 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 5 PNWRHPARFRLDQKCQQEFHDRGPEDIHRPIYP 37
PN HPA L + ++ H +G +DIH I
Sbjct: 200 PN-DHPALVEL-KIWERWLHTQGYKDIHLDITA 230
>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease,
Peptidase S8 family domain in Thiazoline
oxidase/subtilisin-like proteases. Thiazoline
oxidase/subtilisin-like protease is produced by the
symbiotic bacteria Prochloron spp. that inhabit didemnid
family ascidians. The cyclic peptides of the
patellamide class found in didemnid extracts are now
known to be synthesized by the Prochloron spp. The
prepatellamide is heterocyclized to form thiazole and
oxazoline rings and the peptide is cleaved to form the
two cyclic patellamides A and C. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Length = 267
Score = 26.9 bits (60), Expect = 6.2
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 138 DIPGAATRGDRSRIQSGSSCS 158
+I GAA G+ R +SG+S +
Sbjct: 195 NILGAALGGEVVR-RSGTSFA 214
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 26.6 bits (59), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 131 GDIQETRDIPGAATRGDRSRIQSGS 155
GD+ E GAA+RG R R++ GS
Sbjct: 89 GDVFEAFFGGGAASRGPRGRVRPGS 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.455
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,685,204
Number of extensions: 854923
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 33
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)