RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10639
(189 letters)
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein;
NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Length = 77
Score = 76.1 bits (187), Expect = 5e-19
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 48 PIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGT 107
RYKTELCR+ C+YG +C+FAH + ELR RH +Y+T LC + G C YG+
Sbjct: 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGS 66
Query: 108 RCSFIH 113
RC FIH
Sbjct: 67 RCHFIH 72
Score = 42.2 bits (99), Expect = 4e-06
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 83 PVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
RY+T LCR Y +G C YG +C F H
Sbjct: 4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAH 34
Score = 36.5 bits (84), Expect = 5e-04
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 39 QESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
R +YKTELC + C YG RC F H+ E
Sbjct: 36 LGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Length = 98
Score = 45.1 bits (106), Expect = 7e-07
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 48 PIRYKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYG 106
+ K ELC+ + G+ C E C + H C+ YH G C G
Sbjct: 8 ELPKKRELCKFYITGF--CARAENCPYMHGDFP--------------CKLYHTTGNCING 51
Query: 107 TRCSFIHRVPGEEVDPVKKYR 127
C F H EE +
Sbjct: 52 DDCMFSHDPLTEETRELLDKM 72
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
influenza A, nonstructural protein, viral protein: HOST
complex, Zn finger; 1.95A {Homo sapiens}
Length = 72
Score = 41.4 bits (97), Expect = 8e-06
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 51 YKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
KT +C+ L G C+ G++C F H + + C Y G C+ C
Sbjct: 14 EKTVVCKHWLRGL--CKKGDQCEFLHEYDMTKMSE---------CYFYSKFGECS-NKEC 61
Query: 110 SFIHRVPGEEV 120
F+H P ++
Sbjct: 62 PFLHIDPESKI 72
Score = 24.8 bits (54), Expect = 6.1
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKY 126
+T +C+++ G+C G +C F+H ++ Y
Sbjct: 7 HHSHMSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMTKMSECYFY 50
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 77
Score = 40.6 bits (95), Expect = 2e-05
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 51 YKTELCRS-LEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRC 109
KT +C+ L G C+ G++C F H + + P C Y G C+ C
Sbjct: 8 EKTVVCKHWLRGL--CKKGDQCEFLHEYDMTKMPE---------CYFYSKFGECS-NKEC 55
Query: 110 SFIHRVPGEEVDPVKKY 126
F+H P ++
Sbjct: 56 PFLHIDPESKIKDCPWS 72
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH
zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 69
Score = 33.0 bits (75), Expect = 0.009
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 65 CQYGERCRFAHSVEELRPPVRHYRYR 90
C G C+FAH EL
Sbjct: 31 CPEGNSCKFAHGNAELHEWEERRDAL 56
Score = 28.0 bits (62), Expect = 0.53
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 81 RPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
R P ++ +C Y NG C G C F H
Sbjct: 14 RFPTGYFS----ICDRYM-NGTCPEGNSCKFAH 41
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A
{Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Length = 240
Score = 30.5 bits (68), Expect = 0.24
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 88 RYRTRLCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ C + G+C G +C ++H +P EE R D
Sbjct: 67 DGQLFFCL-FFAKGMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCF 112
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform
1, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 29.5 bits (65), Expect = 0.24
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 52 KTELCRSLEGYRPCQYGERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSF 111
K E+CR + + CRFAH + +C +Y C C +
Sbjct: 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTS--DNTVTVCMDYIKGR-CMREK-CKY 74
Query: 112 IH 113
H
Sbjct: 75 FH 76
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative
splicing, metal- binding, nucleus, RNA-binding, zinc,
zinc-finger, metal binding; 1.50A {Homo sapiens} PDB:
3d2s_A
Length = 70
Score = 28.5 bits (63), Expect = 0.33
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 65 CQYGE-RCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
C GE CRFAH + +C +Y +C + H
Sbjct: 17 CNRGENDCRFAHPADSTMIDTN--DNTVTVCMDYIKGRCSR--EKCKYFH 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.49
Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 42/162 (25%)
Query: 13 FRLDQKCQQEFHDRGPEDIHRPIYPYQESD------------RFLLDPIRYKTE--LCRS 58
F + C+ +D+ + I +E D L + K E + +
Sbjct: 29 FVDNFDCKD------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 59 LEGYRPCQYG---ERCRFAHSVEELRPPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRV 115
+E Y + E+ +P + Y R+ +N
Sbjct: 83 VEEVLRINYKFLMSPIK----TEQRQPSMMTRMYIE--QRDRLYNDN----------QVF 126
Query: 116 PGEEVDPVKKYREIHGDIQETRDIPGAATRGDRSRIQSGSSC 157
V ++ Y ++ + E R G SG +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---SGKTW 165
>1xyn_A XYNI, endo-1,4-beta-xylanase I; hydrolase; 2.00A {Hypocrea
jecorina} SCOP: b.29.1.11
Length = 178
Score = 29.0 bits (65), Expect = 0.75
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 146 GDRSRIQSGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
G S S + S +W++ + GW+T SS F
Sbjct: 13 GQVSYSPSNTGFSVNWNTQDDFVVGVGWTTGSSAPINF 50
>3m4f_A Endo-1,4-beta-xylanase; family 11 endoxylanase, acidophilic
adaptation, structure/FU relationship, glycosidase,
hydrolase; HET: CXS; 1.89A {Scytalidium acidophilum}
Length = 205
Score = 28.6 bits (64), Expect = 1.0
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 152 QSGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
+ + + W +++ GWST +++ +
Sbjct: 46 EGAGTYTCGWDGSTDFVVGLGWSTGAARDITY 77
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH
domain, member 1(nuclear), structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.66.1.1
Length = 50
Score = 26.3 bits (57), Expect = 1.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 82 PPVRHYRYRTRLCRNYHHNGVCNYGTRCSFIHRVPG 117
PP H + T +C N+ G C G +C H + G
Sbjct: 11 PPATHRPHPTSICDNFSAYGWCPLGPQCPQSHDISG 46
>3mf6_A Endo-1,4-beta-xylanase; peptide binding, jelly-role, designed,
computational, family thumb, glycosidase, hydrolase,
xylan degradation; 1.28A {Thermopolyspora flexuosa} PDB:
3mf9_A 3mfc_A 3mfa_A 1m4w_A* 3b5l_B 3zse_A* 1hix_A
Length = 193
Score = 27.9 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 153 SGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
SG S S+SW + GWST +T +
Sbjct: 35 SGGSYSTSWRNTGLFLAGKGWSTGGRRTVTY 65
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic,
hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Length = 103
Score = 27.0 bits (60), Expect = 1.6
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 14/41 (34%)
Query: 153 SGSSCSSSWS----------SASNASYSPGWSTASSKTFEF 183
G++ S WS + S++ G + TF F
Sbjct: 45 PGATVGSFWSANKQEGNGYVIFTPVSWNKGPTA----TFGF 81
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins,
galactosides, galectin, acetylation, sugar binding
protein; 2.10A {Gallus gallus}
Length = 135
Score = 27.6 bits (61), Expect = 1.6
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
G + SF +R+ D + HGD
Sbjct: 92 SINPSDLTVHLP-GHQFSFPNRLGLSVFDYF----DTHGDFT 128
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Length = 129
Score = 27.2 bits (60), Expect = 1.8
Identities = 4/42 (9%), Positives = 11/42 (26%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ G +F +R+ + + + G
Sbjct: 84 TFESDKFKVKLPDGHELTFPNRLGHSHLSYL----SVRGGFN 121
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar
protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A*
2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Length = 148
Score = 26.5 bits (58), Expect = 4.0
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
L ++ + N + HRVP VD + ++G +Q
Sbjct: 104 LVQSSDFKVMVNGILFVQYFHRVPFHRVDTI----SVNGSVQ 141
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein;
2.15A {Gallus gallus} SCOP: b.29.1.3
Length = 132
Score = 26.5 bits (58), Expect = 4.2
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
F +R+ E++ + + GD +
Sbjct: 89 SFDAAEVKVKVP-EVEFEFPNRLGMEKIQYL----AVEGDFK 125
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein;
HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3
PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A*
3ak0_A* 3ajz_A*
Length = 135
Score = 26.5 bits (58), Expect = 4.3
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ + G F +R + + + GD +
Sbjct: 91 TFDTHTFYIQLSNGETVEFPNRNKDAAFNLI----YLAGDAR 128
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} PDB: 1bkz_A
2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Length = 138
Score = 26.4 bits (58), Expect = 4.5
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ + V F HR+P V V E+ GD+Q
Sbjct: 94 IASDDGFKAVVGDAQYHHFRHRLPLARVRLV----EVGGDVQ 131
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A
{Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A*
1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A
2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A*
Length = 134
Score = 26.0 bits (57), Expect = 5.1
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ G F +R+ E ++ + GD +
Sbjct: 90 TFDQANLTVKLPDGYEFKFPNRLNLEAINYM----AADGDFK 127
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo
sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A*
Length = 142
Score = 26.1 bits (57), Expect = 5.2
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ + N + +F HR+ E V V ++ DI
Sbjct: 94 SVLPDKYQVMVNGQSSYTFDHRIKPEAVKMV----QVWRDIS 131
>2vgd_A Enxyn11A; glycoside hydrolase, xylanase, beta jelly roll,
hydrolase; HET: XYP FX3; 1.8A {Escherichia coli} PDB:
2vuj_A 2vul_A*
Length = 218
Score = 26.0 bits (57), Expect = 6.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 153 SGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
SG +S+WS +N GW T S + +
Sbjct: 56 SGGRYTSNWSGINNWVGGKGWQTGSRRNITY 86
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 164
Score = 26.1 bits (57), Expect = 6.5
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRV-PGEEVDPVKKYREIHGDIQ 134
C N F HR+ + VD + EI GD+
Sbjct: 114 RCGLDRFKVYANGQHLFDFAHRLSAFQRVDTL----EIQGDVT 152
>1te1_B GH11, endo-1,4-xylanase; beta/alpha barrel (XIP-I) and beta jelly
roll (GH11), hydrol inhibitor-hydrolase complex; HET:
NAG; 2.50A {Penicillium funiculosum} SCOP: b.29.1.11
Length = 190
Score = 25.9 bits (57), Expect = 6.7
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 153 SGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
S +W + + GW+ A+++T +
Sbjct: 32 DNGEYSVTWVDCGDFTSGKGWNPANAQTVTY 62
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 25.8 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 142 AATRGDRSRIQSGSSCSSSWSSASNASYSPG 172
AA DR R GS+CS W S + G
Sbjct: 3 AARSEDRYRNPKGSACSRIWQSPRFIARKRG 33
>2dck_A Xylanase J; family 11, xylan binding domain (XBM), beta-jelly roll,
ALKA xylanase, hydrolase; 2.10A {Bacillus SP} PDB:
2dcj_A
Length = 354
Score = 25.9 bits (56), Expect = 8.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 153 SGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
SG + S+ WS+ +N + G ++T +
Sbjct: 58 SGGTFSAQWSNVNNILFRKGKKFDETQTHQQ 88
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
fusion of virus membrane with membrane, membrane fusion,
sialic acid, virion; HET: NAG BMA; 2.70A {Artificial
gene}
Length = 74
Score = 24.4 bits (53), Expect = 9.1
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 155 SSCSSSWSSASNASYSPGWSTASSKTFE 182
AS W + + FE
Sbjct: 5 DDDDKGSHMASTRGSGRPWKFSENIAFE 32
>2z79_A Endo-1,4-beta-xylanase A; glycoside hydrolase, glycosidase, xylan
degradatio hydrolase; 1.30A {Bacillus subtilis} PDB:
2qz3_A 2dcy_A* 1xxn_A* 1bcx_A* 1xnb_A 1bvv_A 2b42_B
3hd8_B 1hv0_A 2bvv_A 1c5h_A 1c5i_A 1hv1_A 1xnc_A 2dcz_A
3exu_A* 2b46_X* 2b45_X*
Length = 185
Score = 25.6 bits (56), Expect = 9.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 152 QSGSSCSSSWSSASNASYSPGWSTASSKT 180
SG + S +WS+ N GW+T S
Sbjct: 21 GSGGNYSVNWSNTGNFVVGKGWTTGSPFR 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.455
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,095,133
Number of extensions: 171912
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 59
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)