RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10639
(189 letters)
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 40
Score = 53.2 bits (128), Expect = 5e-11
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRPP 83
RYKTELCR+ C+YG +C+FAH + ELR
Sbjct: 6 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39
Score = 44.4 bits (105), Expect = 1e-07
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 88 RYRTRLCRNYHHNGVCNYGTRCSFIH 113
RY+T LCR Y +G C YG +C F H
Sbjct: 6 RYKTELCRTYSESGRCRYGAKCQFAH 31
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 52.4 bits (126), Expect = 9e-11
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEELRP 82
RYKTELCR E C+YGE+C+FAH ELR
Sbjct: 3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35
Score = 44.3 bits (105), Expect = 9e-08
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 88 RYRTRLCRNYHHNGVCNYGTRCSFIH 113
RY+T LCR + +G C YG +C F H
Sbjct: 3 RYKTELCRPFEESGTCKYGEKCQFAH 28
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 47.4 bits (113), Expect = 6e-09
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 85 RHYRYRTRLCRNYHHNGVCNYGTRCSFIH 113
RH +Y+T LCR +H G C YG RC FIH
Sbjct: 2 RHPKYKTELCRTFHTIGFCPYGPRCHFIH 30
Score = 44.7 bits (106), Expect = 8e-08
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 50 RYKTELCRSLEGYRPCQYGERCRFAHSVEE 79
+YKTELCR+ C YG RC F H+ +E
Sbjct: 5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE 34
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 27.1 bits (60), Expect = 0.70
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ G +F +R+ + Y + G
Sbjct: 84 TFESDKFKVKLPDGHELTFPNRLGHSHLS----YLSVRGGFN 121
>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 27.2 bits (60), Expect = 0.72
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 27/118 (22%)
Query: 33 RPIYPYQESDRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSV-----------EELR 81
RP+ + +D ++ + + F V +++
Sbjct: 24 RPLVCFLNEPYLQVD-------FHTEMKEESDIVFHFQVCFGRRVVMNSREYGAWKQQVE 76
Query: 82 PPVRHYRYRTR-----LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
++ + + N + +F HR+ E V ++ DI
Sbjct: 77 SKNMPFQDGQEFELSISVLPDKYQVMVNGQSSYTFDHRIKPEAVK----MVQVWRDIS 130
>d1te1b_ b.29.1.11 (B:) Xylanase II {Penicillium funiculosum [TaxId:
28572]}
Length = 190
Score = 27.3 bits (61), Expect = 0.77
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 152 QSGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
S +W + + GW+ A+++T +
Sbjct: 31 GDNGEYSVTWVDCGDFTSGKGWNPANAQTVTY 62
>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 187
Score = 26.8 bits (59), Expect = 1.4
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 42 DRFLLDPIRYKTELCRSLEGYRPCQYGERCRFAHSVEELRPPV-RHYRYRTRLCRNYHHN 100
DR+L+D Y+ +L EG++ Y + E + + + R +N
Sbjct: 60 DRYLID---YENKL-ELNEGFKAIMYKNQ------FETFDSKLRKIFNNGLRDLQNGRDE 109
Query: 101 GVCNYGTRCSF 111
+ YG C
Sbjct: 110 NLSQYGIVCKM 120
>d1m4wa_ b.29.1.11 (A:) Xylanase II {Nonomuraea flexuosa [TaxId:
103836]}
Length = 197
Score = 26.6 bits (59), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 153 SGSSCSSSWSSASNASYSPGWSTASSKTFEF 183
SG S S+SW + N GWST +T +
Sbjct: 33 SGGSYSTSWRNTGNFVAGKGWSTGGRRTVTY 63
>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster)
[TaxId: 7943]}
Length = 135
Score = 26.0 bits (57), Expect = 2.2
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
G F +R E + + + GD +
Sbjct: 91 SYDINKFYIDILDGPNLEFPNRYSKEFLP----FLSLAGDAR 128
>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster)
[TaxId: 7943]}
Length = 134
Score = 25.2 bits (55), Expect = 3.7
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ + G F +R + + GD +
Sbjct: 90 TFDTHTFYIQLSNGETVEFPNRNKDAAFN----LIYLAGDAR 127
>d2nlra_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
(cellulase) catalytic domain {Streptomyces lividans,
CelB2 [TaxId: 1916]}
Length = 222
Score = 25.6 bits (56), Expect = 4.1
Identities = 3/34 (8%), Positives = 12/34 (35%)
Query: 152 QSGSSCSSSWSSASNASYSPGWSTASSKTFEFPH 185
+ C ++ + + + G + + +P
Sbjct: 26 STAPQCVTATDTGFRVTQADGSAPTNGAPKSYPS 59
>d1bcoa1 b.48.1.1 (A:481-560) mu transposase, C-terminal domain
{Bacteriophage mu [TaxId: 10677]}
Length = 80
Score = 24.4 bits (53), Expect = 4.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 28 PEDIHRPIYPYQESDRFL 45
P+ +H +Y Y RF+
Sbjct: 57 PQQLHSTVYCYTLDGRFI 74
>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 24.9 bits (54), Expect = 4.8
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ + V F HR+P V E+ GD+Q
Sbjct: 89 IASDDGFKAVVGDAQYHHFRHRLPLARVR----LVEVGGDVQ 126
>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 134
Score = 24.5 bits (53), Expect = 5.7
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 93 LCRNYHHNGVCNYGTRCSFIHRVPGEEVDPVKKYREIHGDIQ 134
+ G F +R+ E ++ Y GD +
Sbjct: 90 TFDQANLTVKLPDGYEFKFPNRLNLEAIN----YMAADGDFK 127
>d1xyna_ b.29.1.11 (A:) Xylanase II {Trichoderma reesei, xynI
[TaxId: 51453]}
Length = 178
Score = 24.6 bits (54), Expect = 6.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 158 SSSWSSASNASYSPGWSTASSKTFEF 183
S +W++ + GW+T SS F
Sbjct: 25 SVNWNTQDDFVVGVGWTTGSSAPINF 50
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 22.9 bits (49), Expect = 9.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 94 CRNYHHNGVCNYGTRCSFIH 113
C+ YH G C G C F H
Sbjct: 3 CKLYHTTGNCINGDDCMFSH 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.455
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 792,211
Number of extensions: 37435
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 29
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)