BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1064
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQF8|RT63_MOUSE Ribosomal protein 63, mitochondrial OS=Mus musculus GN=Mrp63 PE=2
SV=1
Length = 102
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
M LT +LLRG + P G + GK+R V+ K I ++E N + L PY+T E
Sbjct: 1 MFLTAVLLRG--RIP-GRQWIGKHRRPRTVSFQAKESMIRRLEVEAENHYWLSMPYMTAE 57
Query: 61 EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWE 107
+E H ER +A KF KH + D L L KW
Sbjct: 58 QECGHAA--ERRAQAFEAIKAAATSKFPKHRYIADQLDHLNISKKWS 102
>sp|Q6PBR7|RT63_DANRE Ribosomal protein 63, mitochondrial OS=Danio rerio GN=mrp63 PE=2
SV=1
Length = 103
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
M LT LLR K G + GKYR PVT K I+ + E N + + P++T E
Sbjct: 1 MFLTLALLR---KGIPGKQWIGKYRRPRPVTWQIKRNVIKRLEQEAENEYWISRPFMTLE 57
Query: 61 EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKW 106
+E H +R E ++ +A + KF +H + D L+ LR W
Sbjct: 58 QERGH--AAQRREWMWQQIKAERQAKFPEHKYIADQLNHLRVTKTW 101
>sp|Q3ZC04|RT63_BOVIN Ribosomal protein 63, mitochondrial OS=Bos taurus GN=MRP63 PE=1
SV=1
Length = 102
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
M LT +L RG + P G + GK+R V+ L K I +IE N + L P+LT E
Sbjct: 1 MFLTALLCRG--RIP-GRQWIGKHRRPRTVSALAKQNMIRRLEIEAENHYWLSRPFLTAE 57
Query: 61 EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWE 107
+E H +A + KF H +L D L L KW
Sbjct: 58 QERGHAAARRAAAF--EALKAAQAAKFPAHRRLEDQLDHLNVTRKWS 102
>sp|Q9BQC6|RT63_HUMAN Ribosomal protein 63, mitochondrial OS=Homo sapiens GN=MRP63 PE=1
SV=1
Length = 102
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 1 MHLTQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEE 60
M LT +L RG + P G + GK+R V+ K I +IE N + L PY+T E
Sbjct: 1 MFLTALLWRG--RIP-GRQWIGKHRRPRFVSLRAKQNMIRRLEIEAENHYWLSMPYMTRE 57
Query: 61 EELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWE 107
+E H + R E F +A KF H + D L L KW
Sbjct: 58 QERGH-AAVRRREAF-EAIKAAATSKFPPHRFIADQLDHLNVTKKWS 102
>sp|Q929A9|ADDA_LISIN ATP-dependent helicase/nuclease subunit A OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=addA PE=3 SV=1
Length = 1235
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 4 TQILLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEEL 63
T +LL KGN+F V ++++I F++ E +F+ ++ ++ E
Sbjct: 419 TILLLVTNSNDTKGNLFM--------VGDVKQSIY--RFRLAEPTLFMAKYQEYQQDGEG 468
Query: 64 VHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQDKWE 107
++ ++ ++NFR + L FI H + H++++ Y + E
Sbjct: 469 SGIR-IDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAE 511
>sp|Q7VQW6|HIS4_BLOFL 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Blochmannia
floridanus GN=hisA PE=3 SV=1
Length = 251
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 48 NMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHL 97
N + + Y+ + ++HL DL+ N + R L L K + HT +T HL
Sbjct: 29 NPYSILSTYVQQGATMIHLVDLDGARN--PKNRQLSLIKELTHTAITSHL 76
>sp|B7GM51|ADDA_ANOFW ATP-dependent helicase/nuclease subunit A OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=addA PE=3 SV=1
Length = 1209
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 38 KIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHL 97
I F++ E ++FL ++ T++ + DL +N FR + L FI +T+ +
Sbjct: 444 SIYGFRLAEPSLFLQKYNRFTKDGDGGLRIDLAKN--FRSRKEILDGTNFIFRQLMTETV 501
Query: 98 SDLRYQD 104
D+RY D
Sbjct: 502 GDMRYDD 508
>sp|Q9C5P6|CNBL6_ARATH Calcineurin B-like protein 6 OS=Arabidopsis thaliana GN=CBL6 PE=2
SV=2
Length = 226
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 45 EERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLSDL 100
EE +LRHP L + L HLKD+ + F+ HT +TD S+L
Sbjct: 180 EEWRSLVLRHPSLLQNMSLQHLKDVTKT-----------FPNFVFHTIVTDTPSEL 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,202,134
Number of Sequences: 539616
Number of extensions: 1549834
Number of successful extensions: 4414
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4388
Number of HSP's gapped (non-prelim): 44
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)