Query psy1064
Match_columns 107
No_of_seqs 57 out of 59
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vi6_A Homeobox protein nanog; 50.7 34 0.0012 19.8 5.5 38 51-88 22-59 (62)
2 4gt4_A Tyrosine-protein kinase 50.5 3.3 0.00011 31.6 0.0 43 16-58 39-92 (308)
3 2da2_A Alpha-fetoprotein enhan 39.4 58 0.002 19.1 4.7 52 23-83 6-58 (70)
4 4g31_A Eukaryotic translation 36.9 5.9 0.0002 29.9 -0.5 42 17-58 19-66 (299)
5 1yz8_P Pituitary homeobox 2; D 35.9 29 0.00099 20.5 2.7 40 22-70 1-41 (68)
6 3d1n_I POU domain, class 6, tr 35.7 78 0.0027 21.6 5.3 52 23-83 92-144 (151)
7 4aoj_A High affinity nerve gro 34.1 9.9 0.00034 29.1 0.4 42 16-58 54-106 (329)
8 4asz_A BDNF/NT-3 growth factor 33.6 13 0.00045 28.0 1.0 42 16-58 26-78 (299)
9 1luf_A Muscle-specific tyrosin 32.7 13 0.00046 26.8 0.9 44 16-59 60-114 (343)
10 3rkq_A Homeobox protein NKX-2. 32.2 68 0.0023 17.8 4.4 49 24-81 3-51 (58)
11 3poz_A Epidermal growth factor 29.8 23 0.00078 25.9 1.7 43 16-58 28-80 (327)
12 2dmu_A Homeobox protein goosec 29.0 91 0.0031 18.3 5.4 39 23-70 6-45 (70)
13 2h1k_A IPF-1, pancreatic and d 29.0 87 0.003 18.0 5.2 39 23-70 2-41 (63)
14 1iyc_A Scarabaecin; antifungal 28.3 14 0.00048 20.7 0.3 13 11-23 15-27 (36)
15 3omv_A RAF proto-oncogene seri 27.6 16 0.00056 27.9 0.6 43 16-58 49-95 (307)
16 3hyh_A Carbon catabolite-derep 26.7 44 0.0015 25.0 2.9 43 16-58 26-76 (275)
17 1mp8_A Focal adhesion kinase 1 22.3 31 0.001 24.3 1.2 43 16-58 28-79 (281)
18 3cc6_A Protein tyrosine kinase 22.0 47 0.0016 23.2 2.1 43 16-58 25-76 (281)
19 2ecc_A Homeobox and leucine zi 21.7 1.6E+02 0.0054 18.5 4.9 37 25-70 5-41 (76)
20 2l92_A Histone family protein 21.1 39 0.0013 20.4 1.3 15 16-30 12-26 (50)
No 1
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=50.74 E-value=34 Score=19.76 Aligned_cols=38 Identities=11% Similarity=-0.044 Sum_probs=24.5
Q ss_pred HHhcCCCCHHHHhhhhHHHHHHHHHHHHHHHHhhcCCC
Q psy1064 51 LLRHPYLTEEEELVHLKDLERNENFRRERRALKLQKFI 88 (107)
Q Consensus 51 ~Ls~PYlT~EqE~g~~~~l~~r~~~~~~~~~~~~~Kf~ 88 (107)
+...||++.++=...+..++--+.-+.-|.+.+++|.+
T Consensus 22 F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 22 FQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp HHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred HHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 34689999988777777665444555555555544443
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=50.54 E-value=3.3 Score=31.57 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
+|.||.|+++. ++.++........++|..|.+.+.=|.||.+-
T Consensus 39 fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV 92 (308)
T 4gt4_A 39 FGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVV 92 (308)
T ss_dssp SCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBC
T ss_pred CcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCC
Confidence 58999987642 33444444445577899999999999999875
No 3
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=39.37 E-value=58 Score=19.14 Aligned_cols=52 Identities=12% Similarity=-0.076 Sum_probs=28.7
Q ss_pred cccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHHHHHHHHHHHHHHh
Q psy1064 23 KYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALK 83 (107)
Q Consensus 23 K~R~~~-~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~~r~~~~~~~~~~~ 83 (107)
+.|+.+ .+|......|...| ...||.+.++=...+..++--+.-+.-|.+.+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F---------~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFF---------DANAYPKDDEFEQLSNLLNLPTRVIVVWFQNA 58 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH---------HcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhh
Confidence 444444 35666555444333 45899999887766665543333333443333
No 4
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=36.89 E-value=5.9 Score=29.87 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=27.8
Q ss_pred Cceeeeccccc------cccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 17 GNIFRGKYRIV------EPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 17 G~~w~GK~R~~------~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
|.||.++++.. +.|.........+++.+|.+.+.-|.||++-
T Consensus 19 g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV 66 (299)
T 4g31_A 19 GVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIV 66 (299)
T ss_dssp -EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred eEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 77888765532 2232222344567899999999999999874
No 5
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=35.86 E-value=29 Score=20.53 Aligned_cols=40 Identities=13% Similarity=-0.079 Sum_probs=23.3
Q ss_pred ecccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHH
Q psy1064 22 GKYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (107)
Q Consensus 22 GK~R~~~-~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~ 70 (107)
|+.|+.+ .+|......|.. .+...||.+.++=...+..++
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~---------~F~~~~yp~~~~r~~La~~l~ 41 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEA---------TFQRNRYPDMSTREEIAVWTN 41 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHH---------HHTTCSSCCTTTTTHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHH---------HHHccCCCCHHHHHHHHHHHC
Confidence 4555555 345555443333 245699999887666665553
No 6
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=35.74 E-value=78 Score=21.62 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=30.6
Q ss_pred ccccccc-cCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHHHHHHHHHHHHHHh
Q psy1064 23 KYRIVEP-VTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRALK 83 (107)
Q Consensus 23 K~R~~~~-vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~~r~~~~~~~~~~~ 83 (107)
+.|+.+. +|......|...|. .+||.+.++=...+..++--+.-+.-|.+.+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~---------~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNr 144 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFE---------KNPLPTGQEITEMAKELNYDREVVRVWFSNR 144 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHH---------HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCcccCHHHHHHHHHHHH---------hcCCCCHHHHHHHHHHHCCCHHHhHHHHHHH
Confidence 4444443 67776665555554 3899999887776766643333344444433
No 7
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=34.13 E-value=9.9 Score=29.15 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
+|.||.|+++. ++.+.. .....+++|.+|.+.|.-|.||.+-
T Consensus 54 fG~Vy~a~~~~~~~~~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV 106 (329)
T 4aoj_A 54 FGKVFLAECHNLLPEQDKMLVAVKALKE-ASESARQDFQREAELLTMLQHQHIV 106 (329)
T ss_dssp SEEEEEEEESSSCC---CEEEEEEEESC-CSHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcccCCCCeEEEEEEECc-CCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 48889887652 222321 1233467899999999999999875
No 8
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=33.55 E-value=13 Score=28.03 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
.|.||.|+++. ++.+... ..+..++|.+|.+.|.=|.||++-
T Consensus 26 fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV 78 (299)
T 4asz_A 26 FGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIV 78 (299)
T ss_dssp CCCEEEEEECSCC----CEEEEEEEECSC-CHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcccCCCCEEEEEEEeCCC-ChHHHHHHHHHHHHHHhCCCCCCc
Confidence 48999997652 1223211 223467899999999999999875
No 9
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=32.73 E-value=13 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCceeeecccc-----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Q psy1064 16 KGNIFRGKYRI-----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTE 59 (107)
Q Consensus 16 ~G~~w~GK~R~-----------~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~ 59 (107)
.|.+|.|++.. ++.+.........+++..|.+.+.-|.||++-.
T Consensus 60 ~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~ 114 (343)
T 1luf_A 60 FGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114 (343)
T ss_dssp SCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCC
T ss_pred CeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 47888887652 122222223345678999999999999998863
No 10
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=32.23 E-value=68 Score=17.81 Aligned_cols=49 Identities=8% Similarity=-0.090 Sum_probs=26.7
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHHHHHHHHHHHHH
Q psy1064 24 YRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLERNENFRRERRA 81 (107)
Q Consensus 24 ~R~~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~~r~~~~~~~~~ 81 (107)
-|.-..+|..-...|... +-..||++.++=..-+..++--+.-+.-|-+
T Consensus 3 rr~Rt~~t~~q~~~Le~~---------F~~~~yp~~~~r~~La~~l~l~~~qV~~WFq 51 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERR---------FKQQRYLSAPERDQLASVLKLTSTQVKIWFQ 51 (58)
T ss_dssp CCCCCCCCHHHHHHHHHH---------HTTCSSCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHH---------HHHcCCCCHHHHHHHHHHhCcCHHHHHHhhH
Confidence 333444666555544333 3478999988766666655433333333433
No 11
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=29.81 E-value=23 Score=25.86 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCceeeecccc----------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRI----------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~----------~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
.|.+|.|++.. ++.+.........+++..|.+.+.-|.||++-
T Consensus 28 ~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 80 (327)
T 3poz_A 28 FGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 80 (327)
T ss_dssp TEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBC
T ss_pred CeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEe
Confidence 47888886532 22333333344567899999999999999764
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=91 Score=18.28 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=24.0
Q ss_pred cccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHH
Q psy1064 23 KYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (107)
Q Consensus 23 K~R~~~-~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~ 70 (107)
+.|+.+ .+|......|...| ...||.+.++=...+..++
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F---------~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLF---------QETKYPDVGTREQLARKVH 45 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHH---------HccCCCCHHHHHHHHHHHC
Confidence 344444 35666555444433 3489999988777666664
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=29.01 E-value=87 Score=18.03 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=22.2
Q ss_pred cccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHH
Q psy1064 23 KYRIVE-PVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (107)
Q Consensus 23 K~R~~~-~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~ 70 (107)
+.|+.+ .+|......|...| ...||++.++=...|..++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F---------~~~~yp~~~~r~~LA~~l~ 41 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEF---------LFNKYISRPRRVELAVMLN 41 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHH---------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCcCHHHHHHHHHHH---------hcCCCcCHHHHHHHHHHhC
Confidence 344444 35665555444333 4689999988776666554
No 14
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=28.33 E-value=14 Score=20.69 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=10.6
Q ss_pred cCCCCCCceeeec
Q psy1064 11 ARKYPKGNIFRGK 23 (107)
Q Consensus 11 ~~~ip~G~~w~GK 23 (107)
..+-|.|++|-|-
T Consensus 15 rsncpkgkvwngf 27 (36)
T 1iyc_A 15 RSNCPKGKVWNGF 27 (36)
T ss_dssp TSCCCSSCEEETT
T ss_pred ccCCCCcceecCc
Confidence 4588899999984
No 15
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=27.55 E-value=16 Score=27.87 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=29.3
Q ss_pred CCceeeecccccccc---C-HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRIVEPV---T-HLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~~~~v---s-~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
.|.||.|+++....| . ........++|..|.+.+.=|.||++-
T Consensus 49 fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV 95 (307)
T 3omv_A 49 FGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNIL 95 (307)
T ss_dssp SSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred CcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEe
Confidence 589999987653222 1 111122367899999999999999765
No 16
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=26.73 E-value=44 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCceeeeccccc------ccc--CHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRIV------EPV--THLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~~------~~v--s~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
.|.||.++++.. +.| +.........++.+|.+.+.-|.||++-
T Consensus 26 fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv 76 (275)
T 3hyh_A 26 FGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHII 76 (275)
T ss_dssp -CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBC
T ss_pred CeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCC
Confidence 377888866532 112 2333445678899999999999999875
No 17
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=22.29 E-value=31 Score=24.27 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCceeeeccccc---------cccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRIV---------EPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~~---------~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
.|.+|.|.+... +.+.........+++..|.+.+.-|.||++-
T Consensus 28 ~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv 79 (281)
T 1mp8_A 28 FGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIV 79 (281)
T ss_dssp SSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBC
T ss_pred CeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccc
Confidence 378888866421 1111222234567888999999999999875
No 18
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=21.99 E-value=47 Score=23.20 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=27.4
Q ss_pred CCceeeecccc---------ccccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1064 16 KGNIFRGKYRI---------VEPVTHLRKAIKIEEFKIEERNMFLLRHPYLT 58 (107)
Q Consensus 16 ~G~~w~GK~R~---------~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT 58 (107)
.|.+|.|++.. ++.+.........+++..|.+.+.-|.||++.
T Consensus 25 ~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~ 76 (281)
T 3cc6_A 25 FGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 76 (281)
T ss_dssp SSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBC
T ss_pred CeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcc
Confidence 47888875322 12222221223357888999999999999876
No 19
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.68 E-value=1.6e+02 Score=18.49 Aligned_cols=37 Identities=14% Similarity=-0.081 Sum_probs=24.1
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhHHHH
Q psy1064 25 RIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVHLKDLE 70 (107)
Q Consensus 25 R~~~~vs~~~k~~~~~~l~~E~en~~~Ls~PYlT~EqE~g~~~~l~ 70 (107)
....+.|..-...|.+.|+ .+||+|.++=..-++.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~---------~~~YPs~~er~~LA~~tg 41 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFL---------QCQWARREDYQKLEQITG 41 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHH---------HCSSCCHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHHC
Confidence 4445577766666655554 779999887665555443
No 20
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=21.13 E-value=39 Score=20.35 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.8
Q ss_pred CCceeeecccccccc
Q psy1064 16 KGNIFRGKYRIVEPV 30 (107)
Q Consensus 16 ~G~~w~GK~R~~~~v 30 (107)
+|..|-|.+|.|.-|
T Consensus 12 ~G~TWsGRGR~P~Wi 26 (50)
T 2l92_A 12 TGKTWSGRGRQPAWL 26 (50)
T ss_dssp TCCEECSCSSCCSTT
T ss_pred CCCeecCCCCCCccc
Confidence 599999999999887
Done!