RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1064
(107 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.002
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 26/89 (29%)
Query: 30 VTHLRKA---IKIEEFKIE--ER-----NMFLLR-----H-PYLTEEEELVHLKDLERNE 73
LRKA +++ +I ER N FL H L +L+ KDL +N
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVASPFHSHLLVPASDLI-NKDLVKNN 447
Query: 74 -NFRRERRALKLQKFIKHTKLTDHLSDLR 101
+F + +++ + T D SDLR
Sbjct: 448 VSFNAK--DIQIP--VYDTF--DG-SDLR 469
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium}
SCOP: c.56.1.2
Length = 371
Score = 29.4 bits (66), Expect = 0.17
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 27 VEPVTHLRKAIKIEEFKIEERNMFLLRHP---YLTEEEELVHLKDLERNENFRRERRALK 83
V + +KI +I E + Y+T E + +D E+ E E A +
Sbjct: 40 VIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVTLESVGIREQDTEKQEEAMEEVFAKE 99
Query: 84 LQKFIKHTKLTDHLSDL 100
L FIK + D S L
Sbjct: 100 LNFFIKSLNIPDDASCL 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.21
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 65 HLKDLERNENFRRERRALK----LQKFIKHTK--------LTDHLSDLR-YQD 104
HLK++E E R L++ I+H + + L L+ Y+
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Score = 27.9 bits (61), Expect = 0.62
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 35/111 (31%)
Query: 7 LLRGARKYPKGNIFRGKYRIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYLTEEEELVH- 65
L + + K N+ R ++P LR+A+ L + +
Sbjct: 119 LYNDNQVFAKYNVSR-----LQPYLKLRQALLE-----------LRPAKNVL-----IDG 157
Query: 66 -------------LKDLERNENFRRERRALKLQKFIKHTKLTDHLSDLRYQ 103
+ + L L+ + + L L YQ
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 28.8 bits (65), Expect = 0.32
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 17 GNIFRGKYR-------IVEPVTHLRKAIKIEEFKIEERNMFLLRHP 55
G ++R + + IE + E + +L+HP
Sbjct: 21 GKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66
>2eva_A TAK1 kinase - TAB1 chimera fusion protein;
transferase/transferase activator complex; HET: ADN;
2.00A {Homo sapiens}
Length = 307
Score = 28.5 bits (64), Expect = 0.33
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 13/48 (27%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI-------EEFKIEERNMFLLRHPYL 57
G + + K+R + V AIK + F +E R + + HP +
Sbjct: 22 GVVCKAKWRA-KDV-----AIKQIESESERKAFIVELRQLSRVNHPNI 63
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 27.8 bits (62), Expect = 0.59
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 51 LLRHPYLTEEEELVHLKDL-ERNENFRRERRALKLQKFIK 89
LL+H ++ E + DL +R ++ RE L+ +K K
Sbjct: 303 LLKHRFVLRERPPTVIMDLIQRTKDAVRELDNLQYRKMKK 342
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 26.9 bits (60), Expect = 1.1
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 18/50 (36%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI-----------EEFKIEERNMFLLRHP 55
G ++ G++ V AI++ + FK E RH
Sbjct: 47 GQVYHGRWH--GEV-----AIRLIDIERDNEDQLKAFKREVMAYRQTRHE 89
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 26.5 bits (59), Expect = 1.5
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 17/50 (34%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI-----------EEFKIEERNMFLLRHP 55
G + R ++ V A+KI EF E M LRHP
Sbjct: 51 GTVHRAEWH-GSDV-----AVKILMEQDFHAERVNEFLREVAIMKRLRHP 94
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 25.8 bits (57), Expect = 3.6
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 18/50 (36%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI-----------EEFKIEERNMFLLRHP 55
G +++GK+ V A+KI + F+ E + RH
Sbjct: 50 GTVYKGKWH--GDV-----AVKILKVVDPTPEQFQAFRNEVAVLRKTRHV 92
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide-
binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 25.3 bits (56), Expect = 4.3
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 17/50 (34%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI-----------EEFKIEERNMFLLRHP 55
G +++G+++ + +K+ +F E + + HP
Sbjct: 24 GELWKGRWQ-GNDI-----VVKVLKVRDWSTRKSRDFNEECPRLRIFSHP 67
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 25.4 bits (56), Expect = 4.4
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 51 LLRHPYLTEEEELVHLKDL-ERNENFRRERRALKLQK 86
LL+HP++ + + L+DL + + +R+ + ++
Sbjct: 276 LLQHPFVRSAKGVSILRDLINEAMDVKLKRQESQQRE 312
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 25.2 bits (55), Expect = 4.9
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 13/49 (26%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI--------EEFKIEERNMFLLRHPYL 57
G ++ G + V AIK E F E + M LRH L
Sbjct: 281 GEVWMGTWNGTTRV-----AIKTLKPGTMSPEAFLQEAQVMKKLRHEKL 324
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase,
transferase, signaling Pro; HET: ACP; 1.80A
{Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A*
4f1o_A*
Length = 287
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 17 GNIFRGKY------------RIVEPVTHLRKAIKIEEFKIEERNMFLLRHPYL 57
G + +G+ + + K +EF+ E M L HP +
Sbjct: 33 GLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNI 85
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB:
3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A*
3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A*
3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 24.9 bits (55), Expect = 6.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 18/50 (36%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI-----------EEFKIEERNMFLLRHP 55
G +++GK+ V A+K+ + FK E + RH
Sbjct: 38 GTVYKGKWH--GDV-----AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHV 80
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 24.5 bits (54), Expect = 7.7
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 13/49 (26%)
Query: 17 GNIFRGKYRIVEPVTHLRKAIKI--------EEFKIEERNMFLLRHPYL 57
G + G + + V AIK E+F E M L HP L
Sbjct: 22 GLVHLGYWLNKDKV-----AIKTIREGAMSEEDFIEEAEVMMKLSHPKL 65
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 24.3 bits (53), Expect = 9.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 17 GNIFRGKYRIVEPV---THLRKAIKIEEFKIEERNMFLLRHPYL 57
G ++ G + V T + E F E + M LRH L
Sbjct: 198 GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL 241
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 24.2 bits (53), Expect = 10.0
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 52 LRHPYLTEEE---ELVHLKDLERNENFRRERRALKLQKFIKHTKLTDHLS 98
LRHP++T + +V + + ENF+++ + + L +HL+
Sbjct: 271 LRHPWITPVDTQQAMVRRESVVNLENFKKQYVRRRWKLSFSIVSLCNHLT 320
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.410
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,730,172
Number of extensions: 99852
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 44
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)