BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10640
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EFV|B Chain B, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
pdb|1T9G|S Chain S, Structure Of The Human Mcad:etf Complex
Length = 255
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 111/177 (62%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXX 97
+ETIRTALAMGADRGIHVEV E E L P ++++LAK+A++EKVD+V++G
Sbjct: 72 QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98 XXXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 105 DMGVDTGAHIEIVTVEDPPVRQAG 128
D+GVD + + +++VEDPP R AG
Sbjct: 213 DLGVDLTSKLSVISVEDPPQRTAG 236
>pdb|2A1T|S Chain S, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1U|B Chain B, Crystal Structure Of The Human Etf E165betaa Mutant
Length = 255
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 110/177 (62%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXX 97
+ETIRTALAMGADRGIHVEV E E L P ++++LAK+A++EKVD+V++G
Sbjct: 72 QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98 XXXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V +L V+R IDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVERAIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 105 DMGVDTGAHIEIVTVEDPPVRQAG 128
D+GVD + + +++VEDPP R AG
Sbjct: 213 DLGVDLTSKLSVISVEDPPQRTAG 236
>pdb|1EFP|B Chain B, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|D Chain D, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 252
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 96/176 (54%), Gaps = 46/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXXX 98
ET+RTALAMGADR I V + + ++P ++KILA VA+ E +++I G
Sbjct: 70 ETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------- 122
Query: 99 XXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
AID+D N T QM AA L W Q
Sbjct: 123 ---------------------------------------AIDNDMNATGQMLAAILGWAQ 143
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
ATFASKV+ + V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK++
Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAK 199
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 105 DMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
D GVD +E+V+V +P R+AG V VD L
Sbjct: 210 DYGVDVAPRLEVVSVREPEGRKAGIKVGSVDEL 242
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|A Chain A, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|C Chain C, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|E Chain E, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Q Chain Q, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|C Chain C, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
pdb|3CLR|C Chain C, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
pdb|3CLS|C Chain C, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
pdb|3CLT|C Chain C, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
pdb|3CLU|C Chain C, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 264
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 51/178 (28%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGXXXXXXXXX 98
E++R LA GADR + V E + +IL +V ++E DMV G
Sbjct: 71 ESLRKCLAKGADRAVRVWDDAAEGS--DAIVVGRILTEVIKKEAPDMVFAGVQSS----- 123
Query: 99 XXXXXXDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
D T A++LNWP
Sbjct: 124 -----------------------------------------DQAYASTGISVASYLNWPH 142
Query: 159 ATFASKVDKT--DGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
A + + D + ++RE++GG L+ +++ PAV++ L +N+PRYA+L I ++
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQA 200
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 157 PQATFASKVDKTDGELTVKR-----------EIDGGLETIKVKLP-AVISADLRLNEPRY 204
P +A V K DG + +++ GG+ I V+ P S ++ P
Sbjct: 23 PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 82
Query: 205 ATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLG 239
PN+ S C ILN+ + P+ ++Q+ LG
Sbjct: 83 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLG 117
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 157 PQATFASKVDKTDGELTVKR-----------EIDGGLETIKVKLP-AVISADLRLNEPRY 204
P +A V K DG + +++ GG+ I V+ P S ++ P
Sbjct: 21 PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80
Query: 205 ATLPNIMKSQVFCGQILNQMKVKPPSSVMEQLQLG 239
PN+ S C ILN+ + P+ ++Q+ LG
Sbjct: 81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLG 115
>pdb|3LA8|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159
pdb|3LBA|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus
Mutans Ua159 Bound To Hypoxanthine
Length = 303
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 1 MTGAFPSIWRQRQ--GIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVS 58
+TGA P + G R S++ + + H + + I+ D G+++ VS
Sbjct: 167 LTGANPLMGENLDDFGFRFPDMSNAYTADYREVAHQVADKIGIKL------DEGVYIGVS 220
Query: 59 GPEYET 64
GP YET
Sbjct: 221 GPSYET 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,936,872
Number of Sequences: 62578
Number of extensions: 200761
Number of successful extensions: 462
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 22
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)