BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10640
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFK0|ETFB_PONAB Electron transfer flavoprotein subunit beta OS=Pongo abelii GN=ETFB
PE=2 SV=3
Length = 255
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVEV E E L P ++++LAK+A++EKVD+V++GKQ
Sbjct: 72 QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAG 128
KAKKK I+ + P D+GVD + + +++VEDPP R AG
Sbjct: 200 KAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAG 236
>sp|P38117|ETFB_HUMAN Electron transfer flavoprotein subunit beta OS=Homo sapiens GN=ETFB
PE=1 SV=3
Length = 255
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVEV E E L P ++++LAK+A++EKVD+V++GKQ
Sbjct: 72 QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAG 128
KAKKK I+ + P D+GVD + + +++VEDPP R AG
Sbjct: 200 KAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAG 236
>sp|Q68FU3|ETFB_RAT Electron transfer flavoprotein subunit beta OS=Rattus norvegicus
GN=Etfb PE=2 SV=3
Length = 255
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 112/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVEV G E E L P ++++LAK+A++EKVD++ +GKQ
Sbjct: 72 QETIRTALAMGADRGIHVEVPGAEAENLGPLQVARVLAKLAEKEKVDLLFLGKQ------ 125
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA L+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGLLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V ++ V+REIDGGLETI++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKVKVEREIDGGLETIRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
>sp|Q6UAQ8|ETFB_PIG Electron transfer flavoprotein subunit beta OS=Sus scrofa GN=ETFB
PE=2 SV=3
Length = 255
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 112/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVEV E L P ++++LAK+AQ+EKVD+V++GKQ
Sbjct: 72 QETIRTALAMGADRGIHVEVPAAEAHHLGPLQVARVLAKLAQKEKVDLVLLGKQ------ 125
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V ++ V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKVKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAG 128
KAKKK I+ + D+GVD + + +V+VEDPP R AG
Sbjct: 200 KAKKKKIEVIKAGDLGVDLTSKLSVVSVEDPPQRVAG 236
>sp|Q2TBV3|ETFB_BOVIN Electron transfer flavoprotein subunit beta OS=Bos taurus GN=ETFB
PE=2 SV=3
Length = 255
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 112/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVEV E L P ++++LAK+A++EKVD+V++GKQ
Sbjct: 72 QETIRTALAMGADRGIHVEVPAAEANHLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 125
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V ++ V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKIKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAG 128
KAKKK I+ + D+GVD + + +++VEDPP R AG
Sbjct: 200 KAKKKKIEVIKAGDLGVDLTSKLSVISVEDPPQRTAG 236
>sp|Q9DCW4|ETFB_MOUSE Electron transfer flavoprotein subunit beta OS=Mus musculus GN=Etfb
PE=1 SV=3
Length = 255
Score = 173 bits (439), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVE+ G + E+L P ++++LAK+A++EKVD++ +GKQ
Sbjct: 72 QETIRTALAMGADRGIHVEIPGAQAESLGPLQVARVLAKLAEKEKVDLLFLGKQ------ 125
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA L+WP
Sbjct: 126 ----------------------------------------AIDDDCNQTGQMTAGLLDWP 145
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V ++ V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 146 QGTFASQVTLEGDKVKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 202
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAG 128
KAKKK I+ V D+GVD + + +++VE+PP R AG
Sbjct: 200 KAKKKKIEVVKAGDLGVDLTSKVSVISVEEPPQRSAG 236
>sp|Q54YZ4|ETFB_DICDI Electron transfer flavoprotein subunit beta OS=Dictyostelium
discoideum GN=etfb PE=3 SV=1
Length = 250
Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 113/197 (57%), Gaps = 56/197 (28%)
Query: 36 TQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKK 95
T +ETIRTA+AMGAD+GIHVE + LQP ++K+L ++ +EK +++I+GKQ
Sbjct: 69 TSQETIRTAIAMGADKGIHVETTA----ELQPLSVAKLLKELVDKEKPNLIILGKQ---- 120
Query: 96 KPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLN 155
AIDDD NQTAQM A LN
Sbjct: 121 ------------------------------------------AIDDDCNQTAQMLAGLLN 138
Query: 156 WPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQV 215
WPQATFASKVD D + V REIDGGLET+ +KLPA+IS DLRLNEPRYA L NIMKS+
Sbjct: 139 WPQATFASKVDIKDDSVHVTREIDGGLETLSMKLPAIISCDLRLNEPRYAKLQNIMKSKK 198
Query: 216 FCGQILNQMKVKPPSSV 232
++KV+ P S+
Sbjct: 199 A------ELKVETPESL 209
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
K+KK +K +P+ + VDT +++I++VE+PP R G V V+ +
Sbjct: 195 KSKKAELKVETPESLNVDTNCNLKIISVEEPPKRSGGVKVESVENV 240
>sp|P53575|ETFB_BRAJA Electron transfer flavoprotein subunit beta OS=Bradyrhizobium
japonicum (strain USDA 110) GN=etfB PE=3 SV=2
Length = 249
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 103/176 (58%), Gaps = 50/176 (28%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
ETIRT LAMGADRGI V+ G T++P ++KIL KVA+EE+ ++I+GKQ
Sbjct: 70 ETIRTGLAMGADRGILVKAEG----TVEPLAVAKILKKVAEEEQPGLIILGKQ------- 118
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
AIDDDSNQT QM AA L W Q
Sbjct: 119 ---------------------------------------AIDDDSNQTGQMLAALLGWSQ 139
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
ATFASK++ + V RE+DGGL+T+K+K PA+++ DLRLNEPRYA+LPNIMK++
Sbjct: 140 ATFASKLEVEGSDFKVTREVDGGLQTVKLKGPAIVTTDLRLNEPRYASLPNIMKAK 195
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
KAKKKPI + + D GVD A +E++ +P R+AG V DV L
Sbjct: 193 KAKKKPIAEKTVADYGVDVTARLEVLKTTEPAGRKAGVKVKDVAEL 238
>sp|Q9LSW8|ETFB_ARATH Electron transfer flavoprotein subunit beta, mitochondrial
OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1
Length = 251
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 96/178 (53%), Gaps = 52/178 (29%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
+T+RT LAMGADRGIHVE + P I+KIL +A E ++ +GKQ
Sbjct: 70 DTLRTGLAMGADRGIHVETNS----IFLPLTIAKILKSLADVENPGLIFLGKQ------- 118
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
AIDDD NQT QM AA L WPQ
Sbjct: 119 ---------------------------------------AIDDDCNQTGQMVAALLGWPQ 139
Query: 159 ATFASKV--DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
ATFASKV DK TV RE+DGGLET+ V LPAVI+ DLRLN+PRYA+LPNIMK++
Sbjct: 140 ATFASKVVLDKDKNVATVDREVDGGLETLNVDLPAVITTDLRLNQPRYASLPNIMKAK 197
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQ 145
KAK KPIKK++ +D+ VD + IEI+ V +PP R++G +V VD L ID N+
Sbjct: 195 KAKSKPIKKMTVQDLKVDIKSDIEILEVTEPPKRKSGVMVSSVDEL-IDKLKNE 247
>sp|A2XQV4|ETFB_ORYSI Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza
sativa subsp. indica GN=ETFB PE=3 SV=1
Length = 253
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 96/176 (54%), Gaps = 46/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
+T+RTALAMGADR +HV L P ++KIL +A +E +VI+GKQ
Sbjct: 70 DTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQ------- 122
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
AIDDD NQT QM A LNWPQ
Sbjct: 123 ---------------------------------------AIDDDCNQTGQMLAGLLNWPQ 143
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
TFASKV + TV+RE+DGG+ETI + LPAVI+ DLRLN+PRYATLPNIMK++
Sbjct: 144 GTFASKVILNKEKATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAK 199
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQ 145
KAK K IKKV+P+D+ VD + +E+V V +PP R+AG I+ VD L ID N+
Sbjct: 197 KAKSKVIKKVTPEDLDVDIRSDMEVVEVTEPPKRKAGVILSSVDEL-IDRLKNE 249
>sp|Q7F9U3|ETFB_ORYSJ Electron transfer flavoprotein subunit beta, mitochondrial OS=Oryza
sativa subsp. japonica GN=ETFB PE=3 SV=1
Length = 253
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 96/176 (54%), Gaps = 46/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
+T+RTALAMGADR +HV L P ++KIL +A +E +VI+GKQ
Sbjct: 70 DTLRTALAMGADRAVHVLHDPDPSRPLLPLAVAKILRALALQENPGLVILGKQ------- 122
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
AIDDD NQT QM A LNWPQ
Sbjct: 123 ---------------------------------------AIDDDCNQTGQMLAGLLNWPQ 143
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
TFASKV + TV+RE+DGG+ETI + LPAVI+ DLRLN+PRYATLPNIMK++
Sbjct: 144 GTFASKVILNKEKATVEREVDGGIETISLDLPAVITTDLRLNQPRYATLPNIMKAK 199
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
KAK K IKKV+P+D+ VD + +E+V V +PP R+AG I+ VD L
Sbjct: 197 KAKSKVIKKVTPEDLDVDIRSDMEVVEVTEPPKRKAGVILSSVDEL 242
>sp|P38975|ETFB_PARDE Electron transfer flavoprotein subunit beta OS=Paracoccus
denitrificans GN=etfB PE=1 SV=1
Length = 252
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 98/176 (55%), Gaps = 46/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
ET+RTALAMGADR I V + + ++P ++KILA VA+ E +++I GKQ
Sbjct: 70 ETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------- 122
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
AID+D N T QM AA L W Q
Sbjct: 123 ---------------------------------------AIDNDMNATGQMLAAILGWAQ 143
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
ATFASKV+ + V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK++
Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAK 199
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
KAKKKP+ + + D GVD +E+V+V +P R+AG V VD L
Sbjct: 197 KAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDEL 242
>sp|Q9HZP6|ETFB_PSEAE Electron transfer flavoprotein subunit beta OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=etfB PE=3 SV=1
Length = 249
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 50/177 (28%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+E +RTALA+GADR I VE + L ++K+L V +E+ +VI+GKQ
Sbjct: 69 QEQLRTALALGADRAILVE----SNDELNSLAVAKLLKAVVDKEQPQLVILGKQ------ 118
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AID D+NQT QM AA +
Sbjct: 119 ----------------------------------------AIDSDNNQTGQMLAALTGYA 138
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFASKV+ ++ V REIDGGL+T+ + LPA+++ DLRLNEPRYA+LPNIMK++
Sbjct: 139 QGTFASKVEVAGDKVNVTREIDGGLQTVALNLPAIVTTDLRLNEPRYASLPNIMKAK 195
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
KAKKKP+ V+P +GV T + ++ + VE P R AG V V L
Sbjct: 193 KAKKKPLDVVTPDALGVSTASTVKTLKVEAPAARSAGIKVKSVAEL 238
>sp|P42940|ETFB_YEAST Probable electron transfer flavoprotein subunit beta
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CIR1 PE=1 SV=1
Length = 261
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 49/178 (27%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
++ +R LA G D ++ G E ++P I+KIL V +++ ++V++GKQ
Sbjct: 77 QDILRNCLAKGIDTCSLIDSVG--KENIEPLAIAKILKAVVEKKGSNLVLMGKQ------ 128
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD N T QM A LNWP
Sbjct: 129 ----------------------------------------AIDDDCNNTGQMLAGLLNWP 148
Query: 158 QATFASKVDKTD-GELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
QAT A+KV+ D G + V REID G E I+ LP VI+ DLRLN PRY LP +MK++
Sbjct: 149 QATNAAKVEFLDNGRVQVTREIDDGEEVIEASLPMVITTDLRLNTPRYVGLPKLMKAK 206
>sp|Q9UTH2|ETFB_SCHPO Probable electron transfer flavoprotein subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1805.02c PE=3 SV=1
Length = 254
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 83/174 (47%), Gaps = 49/174 (28%)
Query: 41 IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKK 100
+R LA G R + V E L+P ++K+L ++EK ++V++GKQ
Sbjct: 77 LRQCLAKGIGRAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLLGKQ--------- 124
Query: 101 VSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQAT 160
AIDDD++QT M AA L WPQ T
Sbjct: 125 -------------------------------------AIDDDAHQTGGMLAAMLGWPQFT 147
Query: 161 FASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
ASKV ++ V REIDGG ET+ LPA+I+ DLRLN PR+A L +MK++
Sbjct: 148 SASKVRIEGDKVIVTREIDGGEETLSSTLPAIITTDLRLNVPRFANLAKVMKAR 201
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 92 KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137
KA+K P+ K+SP+D+GV ++ V+V +P ++ +V VD +
Sbjct: 199 KARKAPLGKMSPEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSVDEM 244
>sp|P94550|ETFB_BACSU Electron transfer flavoprotein subunit beta OS=Bacillus subtilis
(strain 168) GN=etfB PE=3 SV=1
Length = 257
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 47/174 (27%)
Query: 41 IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKK 100
+RTALAMG D+ + + + E Q + IS++L ++++ D+++ G
Sbjct: 69 LRTALAMGCDQAVLINIEDDLDEPDQ-YSISQVLYHYMKDQEFDLILGG----------- 116
Query: 101 VSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQAT 160
+AID S Q A A L+ P T
Sbjct: 117 -----------------------------------NVAIDGGSGQVAPRLAELLDIPCIT 141
Query: 161 FASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
+K++ + +R+++G +E IK LP +++A LNEPRY +LP IMK++
Sbjct: 142 TITKLEINGTDAEAERDVEGDVEKIKTTLPLLVTAQQGLNEPRYPSLPGIMKAK 195
>sp|P64097|ETFB_MYCTU Electron transfer flavoprotein subunit beta OS=Mycobacterium
tuberculosis GN=etfB PE=3 SV=1
Length = 266
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
E IR AL+MGAD+ +H++ G H S D++ G A+
Sbjct: 75 EAIRKALSMGADKAVHLKDDG--------MHGS------------DVIQTGWALARA--- 111
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
+G G E+V + G VP + A +L PQ
Sbjct: 112 -------LGTIEGT--ELVIAGNESTDGVGGAVP---------------AIIAEYLGLPQ 147
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
T KV G++T +RE D G+ T++ LPAVIS + ++NEPR+ + IM ++
Sbjct: 148 LTHLRKVSIEGGKITGERETDEGVFTLEATLPAVISVNEKINEPRFPSFKGIMAAK 203
>sp|P64098|ETFB_MYCBO Electron transfer flavoprotein subunit beta OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=etfB PE=1 SV=1
Length = 266
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
E IR AL+MGAD+ +H++ G H S D++ G A+
Sbjct: 75 EAIRKALSMGADKAVHLKDDG--------MHGS------------DVIQTGWALARA--- 111
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
+G G E+V + G VP + A +L PQ
Sbjct: 112 -------LGTIEGT--ELVIAGNESTDGVGGAVP---------------AIIAEYLGLPQ 147
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
T KV G++T +RE D G+ T++ LPAVIS + ++NEPR+ + IM ++
Sbjct: 148 LTHLRKVSIEGGKITGERETDEGVFTLEATLPAVISVNEKINEPRFPSFKGIMAAK 203
>sp|P53570|ETFB_METME Electron transfer flavoprotein subunit beta OS=Methylophilus
methylotrophus GN=etfB PE=1 SV=1
Length = 264
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 51/175 (29%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
E++R LA GADR + V E + +IL +V ++E DMV G Q +
Sbjct: 71 ESLRKCLAKGADRAVRVWDDAAEGS--DAIVVGRILTEVIKKEAPDMVFAGVQSS----- 123
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
D T A++LNWP
Sbjct: 124 -----------------------------------------DQAYASTGISVASYLNWPH 142
Query: 159 ATFASKVDKT--DGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNI 210
A + + D + ++RE++GG L+ +++ PAV++ L +N+PRYA+L I
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGI 197
>sp|O33095|ETFB_MYCLE Electron transfer flavoprotein subunit beta OS=Mycobacterium leprae
(strain TN) GN=etfB PE=3 SV=1
Length = 266
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 47/176 (26%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
E IR AL+MGAD+ +H++ G H S D++ G A+
Sbjct: 75 EAIRKALSMGADKAVHLKDDG--------MHGS------------DVIQTGWALARA--- 111
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
+G G E+V + G +VP + A +L PQ
Sbjct: 112 -------LGTIEGT--ELVIAGNESTDGVGGVVP---------------AIIAEYLGLPQ 147
Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
T + G++T +RE D G+ T++ LPAV+S + ++NEPR+ + IM ++
Sbjct: 148 LTHLRTISVEGGKITGERETDEGVFTLEAVLPAVVSVNEKINEPRFPSFKGIMAAK 203
>sp|P97089|ETFB_THETC Electron transfer flavoprotein subunit beta
OS=Thermoanaerobacterium thermosaccharolyticum (strain
ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=etfB PE=3
SV=1
Length = 260
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 49/179 (27%)
Query: 36 TQRET-IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAK 94
TQ E +R ALAMGAD + + + + +K L+K ++ + D+V G+Q
Sbjct: 64 TQAEVALREALAMGADEAYLL--TDRAFAGADTYATAKALSKAIEKFQYDIVFCGRQ--- 118
Query: 95 KKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFL 154
AID D+ Q A L
Sbjct: 119 -------------------------------------------AIDGDTAQVGPQIAEQL 135
Query: 155 NWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
+ PQ T+ KV+ +L V+R ++ G E I+VK P +++A LN PRY ++ I +
Sbjct: 136 DIPQVTYVRKVEIEGDKLIVERALEDGYEIIEVKTPVLLTAIKELNVPRYPSIKGIFNA 194
>sp|P52040|ETFB_CLOAB Electron transfer flavoprotein subunit beta OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=etfB PE=3 SV=2
Length = 259
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADL 197
AID D+ Q A L PQ T+ KV+ L +++ + G E ++VK P +++A
Sbjct: 119 AIDGDTAQVGPEIAEHLGIPQVTYVEKVEVDGDTLKIRKAWEDGYEVVEVKTPVLLTAIK 178
Query: 198 RLNEPRYATLPNIM 211
LN PRY ++ I
Sbjct: 179 ELNVPRYMSVEKIF 192
>sp|O85691|ETFB_MEGEL Electron transfer flavoprotein subunit beta OS=Megasphaera elsdenii
GN=etfB PE=3 SV=1
Length = 270
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 138 AIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADL 197
AID D+ Q A L PQ T+A + ++TV++E + G + + P +I+A
Sbjct: 127 AIDGDTAQVGPQIACELGIPQITYARDIKVEGDKVTVQQENEEGYIVTEAQFPVLITAVK 186
Query: 198 RLNEPRYATLPNIMKSQ 214
LNEPR+ T+ MK++
Sbjct: 187 DLNEPRFPTIRGTMKAK 203
>sp|Q8ZRX0|FIXA_SALTY Protein FixA OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=fixA PE=3 SV=1
Length = 256
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|A9MYK3|FIXA_SALPB Protein FixA OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=fixA PE=3 SV=1
Length = 256
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|Q8Z9L0|FIXA_SALTI Protein FixA OS=Salmonella typhi GN=fixA PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B5BL59|FIXA_SALPK Protein FixA OS=Salmonella paratyphi A (strain AKU_12601) GN=fixA
PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|Q5PIN4|FIXA_SALPA Protein FixA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=fixA PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B5RGA8|FIXA_SALG2 Protein FixA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=fixA PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B5FHH0|FIXA_SALDC Protein FixA OS=Salmonella dublin (strain CT_02021853) GN=fixA PE=3
SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B4T6K2|FIXA_SALNS Protein FixA OS=Salmonella newport (strain SL254) GN=fixA PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B5F756|FIXA_SALA4 Protein FixA OS=Salmonella agona (strain SL483) GN=fixA PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ TD LTV+RE++ +ET+ + LPAVI+ +N
Sbjct: 127 AQQVGLLVGEALNIPAINGVSKILSLTDSTLTVERELEDEVETLSIPLPAVIAVSTDINT 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|Q05559|FIXA_RHILP Protein FixA OS=Rhizobium leguminosarum bv. phaseoli GN=fixA PE=3
SV=1
Length = 279
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 139 IDDDSNQTAQMTAAFLNWPQATFASK---VDKTDGELTVKREIDGGLETIKVKLPAVISA 195
ID D+ Q A L+ Q T+ +K VD E+TV+R +GG +T+ KLP +I+
Sbjct: 123 IDGDTAQVGPGIAKRLDLLQLTYVAKIVSVDINGREITVERRSEGGTQTLMSKLPCLITM 182
Query: 196 DLRLNEPRYATLPNIMKS 213
NE R +L + +++
Sbjct: 183 LEGTNEIRRGSLDDALRA 200
>sp|P53576|FIXA_AZOVI Protein FixA OS=Azotobacter vinelandii GN=fixA PE=3 SV=1
Length = 281
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 51/178 (28%)
Query: 41 IRTALAMGADRGIHV-EVSGPEYETLQ-PFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
+R L+ GAD I V + + +TL + +S ++ K+ ++ VD++ GKQ
Sbjct: 70 LRKCLSFGADDAILVSDRAFAGSDTLATSYALSAVIRKIMEDMPVDLIFTGKQ------- 122
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
ID D+ Q A L++
Sbjct: 123 ---------------------------------------TIDGDTAQVGPGIAKRLDYQL 143
Query: 159 ATFASK---VDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
T+ S+ VD E+ V+R +GG++ ++ LP +I+ NE R+ L ++ ++
Sbjct: 144 LTYVSRIVDVDTAKKEIQVERRAEGGVQLLETSLPCLITMLEGTNEMRFGDLDDLFRA 201
>sp|Q0TLU8|FIXA_ECOL5 Protein FixA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B7MNP8|FIXA_ECO81 Protein FixA OS=Escherichia coli O81 (strain ED1a) GN=fixA PE=3
SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|P59673|FIXA_SHIFL Protein FixA OS=Shigella flexneri GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|Q0T8F3|FIXA_SHIF8 Protein FixA OS=Shigella flexneri serotype 5b (strain 8401) GN=fixA
PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B1LFX5|FIXA_ECOSM Protein FixA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fixA
PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B6HYZ2|FIXA_ECOSE Protein FixA OS=Escherichia coli (strain SE11) GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B7M0D8|FIXA_ECO8A Protein FixA OS=Escherichia coli O8 (strain IAI1) GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B7NHE5|FIXA_ECO7I Protein FixA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC)
GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B7L4G4|FIXA_ECO55 Protein FixA OS=Escherichia coli (strain 55989 / EAEC) GN=fixA PE=3
SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|Q8FLA3|FIXA_ECOL6 Protein FixA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=fixA PE=3 SV=2
Length = 256
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B7MAG4|FIXA_ECO45 Protein FixA OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B7UI87|FIXA_ECO27 Protein FixA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)
GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|P60566|FIXA_ECOLI Protein FixA OS=Escherichia coli (strain K12) GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B1IRD5|FIXA_ECOLC Protein FixA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
Crooks) GN=fixA PE=3 SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|A7ZVZ3|FIXA_ECOHS Protein FixA OS=Escherichia coli O9:H4 (strain HS) GN=fixA PE=3
SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
>sp|B1XBG6|FIXA_ECODH Protein FixA OS=Escherichia coli (strain K12 / DH10B) GN=fixA PE=3
SV=1
Length = 256
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 143 SNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETIKVKLPAVISADLRLNE 201
+ Q + LN P SK+ T LTV+RE++ ET+ + LPAV++ +N
Sbjct: 127 AQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINS 186
Query: 202 PRYATLPNIM 211
P+ ++ I+
Sbjct: 187 PQIPSMKAIL 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,872,925
Number of Sequences: 539616
Number of extensions: 3243284
Number of successful extensions: 8052
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 7914
Number of HSP's gapped (non-prelim): 154
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)