Query psy10640
Match_columns 242
No_of_seqs 166 out of 1417
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 23:40:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2086 FixA Electron transfer 100.0 2.3E-37 4.9E-42 279.6 15.7 150 29-226 60-210 (260)
2 PRK03359 putative electron tra 100.0 1.3E-36 2.8E-41 273.6 16.5 150 29-226 59-211 (256)
3 KOG3180|consensus 100.0 4.4E-37 9.5E-42 270.5 11.8 146 29-222 63-209 (254)
4 PRK12342 hypothetical protein; 100.0 7.5E-36 1.6E-40 268.5 17.1 149 29-225 56-206 (254)
5 cd01714 ETF_beta The electron 99.7 3.2E-16 6.9E-21 135.8 17.5 143 32-222 60-202 (202)
6 PRK03359 putative electron tra 99.7 2.3E-17 4.9E-22 149.0 2.8 127 1-155 126-253 (256)
7 cd01985 ETF The electron trans 99.6 8E-15 1.7E-19 123.1 15.8 137 30-221 41-180 (181)
8 PRK12342 hypothetical protein; 99.6 8.9E-17 1.9E-21 145.1 2.6 126 1-154 123-249 (254)
9 KOG3180|consensus 99.6 1.1E-15 2.3E-20 135.5 3.9 109 5-137 132-244 (254)
10 COG2086 FixA Electron transfer 99.6 9.9E-16 2.2E-20 139.1 2.4 126 1-155 125-254 (260)
11 PF01012 ETF: Electron transfe 99.6 1.9E-14 4.1E-19 118.8 9.5 121 31-202 39-164 (164)
12 cd01715 ETF_alpha The electron 99.1 6.4E-10 1.4E-14 92.9 11.9 117 31-202 35-154 (168)
13 PRK03363 fixB putative electro 97.6 0.0013 2.8E-08 61.8 12.6 108 44-203 44-155 (313)
14 PRK11916 electron transfer fla 97.5 0.0019 4.1E-08 60.6 13.3 108 44-203 44-154 (312)
15 COG2025 FixB Electron transfer 97.2 0.0038 8.3E-08 58.8 11.6 115 39-205 39-157 (313)
16 PLN00022 electron transfer fla 97.0 0.013 2.9E-07 56.0 12.7 101 47-201 84-188 (356)
17 cd01714 ETF_beta The electron 96.8 0.00045 9.8E-09 60.1 1.4 76 3-102 124-202 (202)
18 cd01985 ETF The electron trans 74.4 0.84 1.8E-05 38.3 -0.5 28 2-29 103-130 (181)
19 PF01012 ETF: Electron transfe 46.0 12 0.00025 30.8 1.4 25 5-29 105-129 (164)
20 PF02585 PIG-L: GlcNAc-PI de-N 36.7 66 0.0014 25.0 4.4 54 35-88 53-106 (128)
21 TIGR03457 sulphoacet_xsc sulfo 26.9 1.6E+02 0.0034 29.4 6.0 19 144-162 213-231 (579)
22 COG2120 Uncharacterized protei 26.5 2.7E+02 0.0058 24.8 7.0 80 5-87 27-114 (237)
23 cd01715 ETF_alpha The electron 24.2 46 0.00099 27.6 1.5 24 3-26 96-119 (168)
No 1
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-37 Score=279.59 Aligned_cols=150 Identities=39% Similarity=0.655 Sum_probs=142.8
Q ss_pred ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640 29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV 108 (242)
Q Consensus 29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi 108 (242)
..++|+..+++.||+||+||+||+++| +|+.|++.||+.||++|++++++.++|++|.|.+
T Consensus 60 vlt~Gp~~a~~~lr~aLAmGaDraili--~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~q----------------- 120 (260)
T COG2086 60 VLTMGPPQAEEALREALAMGADRAILI--TDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQ----------------- 120 (260)
T ss_pred EEEecchhhHHHHHHHHhcCCCeEEEE--ecccccCccHHHHHHHHHHHHHhcCCCEEEEecc-----------------
Confidence 359999999999999999999999999 7788999999999999999999999999999999
Q ss_pred CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEE-eCCEEEEEEEeCCeEEEEEE
Q psy10640 109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDK-TDGELTVKREIDGGLETIKV 187 (242)
Q Consensus 109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~-~~~~~~v~r~~~~g~~~~~~ 187 (242)
++|++.+++|.+||++|||||+|+|++|++ ++++++|+|++|+|.|++++
T Consensus 121 -----------------------------a~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~v~v~R~le~g~e~~e~ 171 (260)
T COG2086 121 -----------------------------AIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVTVERELEGGLETVEA 171 (260)
T ss_pred -----------------------------cccCCccchHHHHHHHhCCceeeeEEEEEEcCCCeEEEEEEcCCceEEEEc
Confidence 889999999999999999999999999996 66799999999999999999
Q ss_pred cCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeecccC
Q psy10640 188 KLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKV 226 (242)
Q Consensus 188 ~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~~ 226 (242)
+||||||++.++|+||||||++||+|++++++.|+..++
T Consensus 172 ~LPaVvtv~~~~n~PR~psl~~im~A~kk~v~~~~~~d~ 210 (260)
T COG2086 172 PLPAVVTVDLRINEPRYPSLPGIMAAKKKPVKKWSLADL 210 (260)
T ss_pred cCCEEEEeccccCCCCCCCHHHHHHhccCCceeccHhHh
Confidence 999999999999999999999999999999999964433
No 2
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=100.00 E-value=1.3e-36 Score=273.57 Aligned_cols=150 Identities=25% Similarity=0.353 Sum_probs=141.4
Q ss_pred ccccCcchHH--HHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCC
Q psy10640 29 KSQQHTITQR--ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDM 106 (242)
Q Consensus 29 ~~~~~~~~a~--e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDL 106 (242)
..++|+..++ +.||+||+||||++++| +|+.|++.|++.||++|++++++.+||++|+|.+
T Consensus 59 vvs~Gp~~a~~~~~lr~aLAmGaD~avli--~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~--------------- 121 (256)
T PRK03359 59 ALSVGGKALTNAKGRKDVLSRGPDELIVV--IDDQFEQALPQQTASALAAAAQKAGFDLILCGDG--------------- 121 (256)
T ss_pred EEEECCcchhhHHHHHHHHHcCCCEEEEE--ecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCc---------------
Confidence 4599999966 78999999999999999 6788999999999999999999999999999998
Q ss_pred CCCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEE-EEeCCEEEEEEEeCCeEEEE
Q psy10640 107 GVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKV-DKTDGELTVKREIDGGLETI 185 (242)
Q Consensus 107 gid~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~-~~~~~~~~v~r~~~~g~~~~ 185 (242)
|+|++.++++++||++||||++|+|+++ +++++.++|+|++++|.|++
T Consensus 122 -------------------------------s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~~~~v~v~r~~e~g~e~v 170 (256)
T PRK03359 122 -------------------------------SSDLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLTVERELEDEVETL 170 (256)
T ss_pred -------------------------------cccCCCCcHHHHHHHHhCCCceeeEEEEEEecCCEEEEEEEcCCeEEEE
Confidence 8999999999999999999999999999 47889999999999999999
Q ss_pred EEcCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeecccC
Q psy10640 186 KVKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMKV 226 (242)
Q Consensus 186 ~~~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~~ 226 (242)
+++||||+|++.++|+||||||++||+|+++++++|+.-++
T Consensus 171 e~~lPavvtV~~~~n~PR~psl~~i~~A~kk~i~~~~~~dl 211 (256)
T PRK03359 171 SIPLPAVIAVSTDINSPQIPSMKAILGAAKKPVQVWSAADI 211 (256)
T ss_pred EEcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHHc
Confidence 99999999999999999999999999999999999975443
No 3
>KOG3180|consensus
Probab=100.00 E-value=4.4e-37 Score=270.47 Aligned_cols=146 Identities=60% Similarity=0.892 Sum_probs=137.2
Q ss_pred ccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640 29 KSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV 108 (242)
Q Consensus 29 ~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi 108 (242)
.++.|+..+.++||+|||||+||++||++.+. +.+.|+++|++|.+.+.+.++|++|-|.+
T Consensus 63 avs~G~aqs~~ilRt~LA~Gadr~~hv~~~~~--~~lepl~vAKiLk~~vekek~~lVllGKQ----------------- 123 (254)
T KOG3180|consen 63 AVSIGPAQSQEILRTALAKGADRGVHVEVVGA--EELEPLHVAKILKKLVEKEKSDLVLLGKQ----------------- 123 (254)
T ss_pred EEecCccchHHHHHHHHhccCCceeEEecCch--hhccchHHHHHHHHHHHhhcCCEEEEccc-----------------
Confidence 35899999999999999999999999987653 56779999999999999999999999998
Q ss_pred CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeC-CEEEEEEEeCCeEEEEEE
Q psy10640 109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTD-GELTVKREIDGGLETIKV 187 (242)
Q Consensus 109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~-~~~~v~r~~~~g~~~~~~ 187 (242)
++|+|.+++++++|.+|||||+||+++|++++ ++++|+||+|||+|++++
T Consensus 124 -----------------------------AIDDD~nqTgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGletl~~ 174 (254)
T KOG3180|consen 124 -----------------------------AIDDDCNQTGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLETLKV 174 (254)
T ss_pred -----------------------------ccccchhhhHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhheee
Confidence 79999999999999999999999999999976 459999999999999999
Q ss_pred cCCeEEEEeCCCCCCCCCChHHHHhhcCccceeee
Q psy10640 188 KLPAVISADLRLNEPRYATLPNIMKSQVFCGQILN 222 (242)
Q Consensus 188 ~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~ 222 (242)
+||+||+.|+|+|+|||+||+|||||+++++..+.
T Consensus 175 ~lPaVittDLRLN~PRya~LpniMKAkkkpl~k~~ 209 (254)
T KOG3180|consen 175 KLPAVITTDLRLNTPRYATLPNIMKAKKKPLKKMT 209 (254)
T ss_pred cCceEEEeecccCCccccccHHHHHhccCCcccCC
Confidence 99999999999999999999999999999998774
No 4
>PRK12342 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=268.50 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=140.3
Q ss_pred ccccCcchHHHH--HHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCC
Q psy10640 29 KSQQHTITQRET--IRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDM 106 (242)
Q Consensus 29 ~~~~~~~~a~e~--Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDL 106 (242)
..++|+..+++. +|+||+||||++++| +|+.|++.|+++||++|++++++.+||++|+|.+
T Consensus 56 vls~Gp~~a~~~~l~r~alamGaD~avli--~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~--------------- 118 (254)
T PRK12342 56 ALTVGGSLLQNSKVRKDVLSRGPHSLYLV--QDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEG--------------- 118 (254)
T ss_pred EEEeCCChHhHHHHHHHHHHcCCCEEEEE--ecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCC---------------
Confidence 458999886555 588999999999999 6789999999999999999999989999999998
Q ss_pred CCCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEE
Q psy10640 107 GVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIK 186 (242)
Q Consensus 107 gid~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~ 186 (242)
|.|++.+++|++||++|||||+|+|.+++++++.++|+|++++|.|+++
T Consensus 119 -------------------------------s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~~~~~~~~v~r~~e~g~e~v~ 167 (254)
T PRK12342 119 -------------------------------SGDLYAQQVGLLLGELLQLPVINAVSKIQRQGNKLIVERTLEDDVEVLE 167 (254)
T ss_pred -------------------------------cccCCCCCHHHHHHHHhCCCcEeeEEEEEEeCCEEEEEEEcCCeEEEEE
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred EcCCeEEEEeCCCCCCCCCChHHHHhhcCccceeeeccc
Q psy10640 187 VKLPAVISADLRLNEPRYATLPNIMKSQVFCGQILNQMK 225 (242)
Q Consensus 187 ~~lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~~~~~ 225 (242)
++||||||++.++|+||||||++||+|+++++++|+..+
T Consensus 168 ~~lPavvtv~~~~n~PR~psl~~i~~A~kk~i~~~~~~d 206 (254)
T PRK12342 168 LSLPAVLCVTSDINVPRIPSMKAILGAGKKPVTQWQASD 206 (254)
T ss_pred EcCCEEEEEeCCCCCCCCCCHHHHHHhcCCCceEeCHHH
Confidence 999999999999999999999999999999999997443
No 5
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.72 E-value=3.2e-16 Score=135.80 Aligned_cols=143 Identities=43% Similarity=0.708 Sum_probs=124.9
Q ss_pred cCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCc
Q psy10640 32 QHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTG 111 (242)
Q Consensus 32 ~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s 111 (242)
.|+..+.+..+.+.++|+|+.+++ .+..++..++...+++|++++++.+||++|-+--
T Consensus 60 ~G~~~~~~~~~~l~~~G~d~V~~~--~~~~~~~~~~e~~a~al~~~i~~~~p~lVL~~~t-------------------- 117 (202)
T cd01714 60 MGPPQAEEALREALAMGADRAILV--SDRAFAGADTLATAKALAAAIKKIGVDLILTGKQ-------------------- 117 (202)
T ss_pred ECCHHHHHHHHHHHHcCCCEEEEE--ecccccCCChHHHHHHHHHHHHHhCCCEEEEcCC--------------------
Confidence 444435677777888999999998 4566777889999999999998888998887764
Q ss_pred CceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEcCCe
Q psy10640 112 AHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVKLPA 191 (242)
Q Consensus 112 ~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~lPa 191 (242)
+.+....+++++||..||||+++.+++++.+++.++++|...+|..+++++.|+
T Consensus 118 --------------------------~~~~~grdlaprlAarLga~lvsdv~~l~~~~~~~~~~r~~~gG~~~~~~~~p~ 171 (202)
T cd01714 118 --------------------------SIDGDTGQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGGVETVEVKLPA 171 (202)
T ss_pred --------------------------cccCCcCcHHHHHHHHhCCCccceEEEEEEeCCEEEEEEEcCCcEEEEEecCCE
Confidence 334445799999999999999999999999999999999999999888888999
Q ss_pred EEEEeCCCCCCCCCChHHHHhhcCccceeee
Q psy10640 192 VISADLRLNEPRYATLPNIMKSQVFCGQILN 222 (242)
Q Consensus 192 vis~~~~~~~pr~~~l~~i~~a~~~~~~~~~ 222 (242)
|+++..+..+|+.|+|++||+|.+++++.|+
T Consensus 172 VitVr~g~f~~~~~~~~~~~~a~~~~~~~~~ 202 (202)
T cd01714 172 VITVDLGINEPRYPSLPGIMKAKKKPIEVVS 202 (202)
T ss_pred EEEEECCCCCCCCCCHHHHHHhcCCCCEeeC
Confidence 9999999999999999999999999999874
No 6
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=99.66 E-value=2.3e-17 Score=149.03 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=99.9
Q ss_pred CCCchhHHHHHHhCCccccccccee-eccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHH
Q psy10640 1 MTGAFPSIWRQRQGIRQFTTSSSLS-EAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQ 79 (242)
Q Consensus 1 ~t~~~~~~~~~~~~~~~~t~~~~l~-~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~ 79 (242)
.||++|+++|++||||++|.+.++. .+++. ..++ +...++...++++.+. .++ +... ++
T Consensus 126 ~tgqvg~~lAe~Lg~P~vt~v~~l~~~~~~~----v~v~-------r~~e~g~e~ve~~lPa-------vvt-V~~~-~n 185 (256)
T PRK03359 126 YAQQVGLLVGEILNIPAINGVSKIISLTDDT----LTVE-------RELEDEVETLSIPLPA-------VIA-VSTD-IN 185 (256)
T ss_pred CCCcHHHHHHHHhCCCceeeEEEEEEecCCE----EEEE-------EEcCCeEEEEEEcCCE-------EEE-EeCC-CC
Confidence 4899999999999999999999994 44433 4444 5555666666666533 333 2222 67
Q ss_pred hcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhC
Q psy10640 80 EEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLN 155 (242)
Q Consensus 80 ~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~ 155 (242)
++|| |+|++||+||||||++|+++|||++..+.+++.+.+.|++++.|.++ ++++.++.+.+|+++|.
T Consensus 186 ~PR~-psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~~~~~~~i-------~~g~~~e~a~~lv~~L~ 253 (256)
T PRK03359 186 SPQI-PSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQVAAPKQRERQRIV-------IEGDGEEQIAAFAENLR 253 (256)
T ss_pred CCCC-CCHHHHHHhcCCCceEeCHHHcCCCcCCCcEEEEEecCCCCcCcEEE-------ecCCcHHHHHHHHHHHH
Confidence 7899 99999999999999999999999987778888999999999999886 24455788889988873
No 7
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.64 E-value=8e-15 Score=123.06 Aligned_cols=137 Identities=34% Similarity=0.443 Sum_probs=118.3
Q ss_pred cccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCC
Q psy10640 30 SQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVD 109 (242)
Q Consensus 30 ~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid 109 (242)
...|+...+..++.++++|+|+.+++ .++.++..+|..++++|++++++.+||++|.+-.
T Consensus 41 v~~G~~~~~~~~~~~~~~Gad~v~~~--~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t------------------ 100 (181)
T cd01985 41 LVIGPPAAEVALREALAMGADKVLLV--EDPALAGYDPEATAKALAALIKKEKPDLILAGAT------------------ 100 (181)
T ss_pred EEECChHHHHHHHHHHHhCCCEEEEE--ecCcccCCChHHHHHHHHHHHHHhCCCEEEECCc------------------
Confidence 35677777777899999999999999 4567788899999999999999988999998875
Q ss_pred CcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEe--CCeEEEEEE
Q psy10640 110 TGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREI--DGGLETIKV 187 (242)
Q Consensus 110 ~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~--~~g~~~~~~ 187 (242)
+ . ..+++++||..||||+++.+++++.+++.++++|.. +++.+++++
T Consensus 101 ----------------------------~-~--g~~la~rlA~~L~~~~vsdv~~l~~~~~~~~~~r~~~~g~~~~~~~~ 149 (181)
T cd01985 101 ----------------------------S-I--GKQLAPRVAALLGVPQISDVTKLEIDGGDLTVTRPIYAGNGLETVES 149 (181)
T ss_pred ----------------------------c-c--ccCHHHHHHHHhCCCcceeEEEEEEeCCEEEEEEEccCCCeEEEEEE
Confidence 1 2 379999999999999999999999999999999999 555789999
Q ss_pred c-CCeEEEEeCCCCCCCCCChHHHHhhcCccceee
Q psy10640 188 K-LPAVISADLRLNEPRYATLPNIMKSQVFCGQIL 221 (242)
Q Consensus 188 ~-lPavis~~~~~~~pr~~~l~~i~~a~~~~~~~~ 221 (242)
+ .|+|+++..+.++|++++.++ +++++..+
T Consensus 150 ~~~p~v~tv~~~~~~~~~~~~~~----~~~~i~~~ 180 (181)
T cd01985 150 PDLPAVITVRPGAFEPRYPSGPG----KKKPVEKV 180 (181)
T ss_pred CCCCEEEEecCCCCCCCCCCCCC----CCCCCEec
Confidence 7 999999999999999999887 55555543
No 8
>PRK12342 hypothetical protein; Provisional
Probab=99.63 E-value=8.9e-17 Score=145.14 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=98.3
Q ss_pred CCCchhHHHHHHhCCcccccccceeeccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHh
Q psy10640 1 MTGAFPSIWRQRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQE 80 (242)
Q Consensus 1 ~t~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~ 80 (242)
.||++|+++|++||||++|.+.+++.+++. ..++ +...++...+++..+.. ++ +.. -+++
T Consensus 123 ~tgqvg~~lA~~Lg~P~vt~v~~~~~~~~~----~~v~-------r~~e~g~e~v~~~lPav-------vt-v~~-~~n~ 182 (254)
T PRK12342 123 YAQQVGLLLGELLQLPVINAVSKIQRQGNK----LIVE-------RTLEDDVEVLELSLPAV-------LC-VTS-DINV 182 (254)
T ss_pred CCCCHHHHHHHHhCCCcEeeEEEEEEeCCE----EEEE-------EEcCCeEEEEEEcCCEE-------EE-EeC-CCCC
Confidence 489999999999999999999999887654 4444 44455555666655333 22 211 2577
Q ss_pred cCCCcchhhhhhhcCCCcceeCCCCCCCCC-cCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHh
Q psy10640 81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDT-GAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFL 154 (242)
Q Consensus 81 ~~yd~iL~gImkAKKKpIe~vslaDLgid~-s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L 154 (242)
+|| |.|++||+||||||++|+.+|||++. .+.+++.+.+.|++++.|.++ ++++..+.+.+|+++|
T Consensus 183 PR~-psl~~i~~A~kk~i~~~~~~dlg~~~~~~~~~v~~~~~p~~~~~~~~~-------~~g~~~e~a~~l~~~L 249 (254)
T PRK12342 183 PRI-PSMKAILGAGKKPVTQWQASDIGWSQSAPLAELVGIRVPPQTERKHII-------LDNDSPEAIAELAEHL 249 (254)
T ss_pred CCC-CCHHHHHHhcCCCceEeCHHHcCCCCCCCceEEEEEeCCCcccCccEE-------ecCChHHHHHHHHHHH
Confidence 899 99999999999999999999999986 589999999999998888554 3455577888888876
No 9
>KOG3180|consensus
Probab=99.57 E-value=1.1e-15 Score=135.53 Aligned_cols=109 Identities=31% Similarity=0.383 Sum_probs=89.4
Q ss_pred hhHHHHHHhCCcccccccceeecccc----ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHh
Q psy10640 5 FPSIWRQRQGIRQFTTSSSLSEAEKS----QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQE 80 (242)
Q Consensus 5 ~~~~~~~~~~~~~~t~~~~l~~~~~~----~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~ 80 (242)
-+.|+|..|||||.|+++.++.+++- +|--....|+|+.-| +..|..+. -++.
T Consensus 132 TgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGletl~~~l------PaVittDL-----------------RLN~ 188 (254)
T KOG3180|consen 132 TGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLETLKVKL------PAVITTDL-----------------RLNT 188 (254)
T ss_pred hHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhheeecC------ceEEEeec-----------------ccCC
Confidence 35789999999999999999998752 444444555665333 44443222 1567
Q ss_pred cCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCCCceeecCcccc
Q psy10640 81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTL 137 (242)
Q Consensus 81 ~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~aG~ileda~~L 137 (242)
+|| -+|+||||||||||+++++.|||++..++++++++.+|+.|++|.++.++++|
T Consensus 189 PRy-a~LpniMKAkkkpl~k~~~~dl~Vdi~~~l~~vsv~ePp~r~~gv~v~svdel 244 (254)
T KOG3180|consen 189 PRY-ATLPNIMKAKKKPLKKMTIKDLGVDITPQLETVSVEEPPQRQAGVMVKSVDEL 244 (254)
T ss_pred ccc-cccHHHHHhccCCcccCCHHHcCcccccceEEEEecCCCcccCCceeeeHHHH
Confidence 899 99999999999999999999999999999999999999999999999988877
No 10
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=99.56 E-value=9.9e-16 Score=139.05 Aligned_cols=126 Identities=27% Similarity=0.296 Sum_probs=96.4
Q ss_pred CCCchhHHHHHHhCCcccccccceee-ccccccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHH
Q psy10640 1 MTGAFPSIWRQRQGIRQFTTSSSLSE-AEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQ 79 (242)
Q Consensus 1 ~t~~~~~~~~~~~~~~~~t~~~~l~~-~~~~~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~ 79 (242)
.||++|.++|++||||++|.++++.. +++. ..++ +...++.-.++++. |+.++ +.-. ++
T Consensus 125 ~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~----v~v~-------R~le~g~e~~e~~L-------PaVvt-v~~~-~n 184 (260)
T COG2086 125 DTGQVGPLLAELLGWPQVTYVSKIEIVDGGK----VTVE-------RELEGGLETVEAPL-------PAVVT-VDLR-IN 184 (260)
T ss_pred CccchHHHHHHHhCCceeeeEEEEEEcCCCe----EEEE-------EEcCCceEEEEccC-------CEEEE-eccc-cC
Confidence 48999999999999999999999996 5533 3333 33444445555554 33333 3333 78
Q ss_pred hcCCCcchhhhhhhcCCCcceeCCCCCCC---CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhC
Q psy10640 80 EEKVDMVIVGKQKAKKKPIKKVSPKDMGV---DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLN 155 (242)
Q Consensus 80 ~~~yd~iL~gImkAKKKpIe~vslaDLgi---d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~ 155 (242)
+||| +.|++||+|||||+++|+++|+|+ ...+++++.+.++|+.|+.|.++.| + ..+.+..|+++|.
T Consensus 185 ~PR~-psl~~im~A~kk~v~~~~~~d~g~~~~~~~s~~~v~~~~~~~~r~~~~~v~~-------~-~~e~a~~lv~~L~ 254 (260)
T COG2086 185 EPRY-PSLPGIMAAKKKPVKKWSLADLGLNVGLAGSPLKVVKVTPPPERKAGVKVKD-------G-PEEIAAELVEKLK 254 (260)
T ss_pred CCCC-CCHHHHHHhccCCceeccHhHhcccccccCCcceeeeccCCccccCceEecC-------c-HHHHHHHHHHHHH
Confidence 8999 999999999999999999999994 4669999999999999999998742 2 4666777777763
No 11
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=99.55 E-value=1.9e-14 Score=118.85 Aligned_cols=121 Identities=31% Similarity=0.431 Sum_probs=101.7
Q ss_pred ccCc-chHHHHHHHHHH-cCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCC
Q psy10640 31 QQHT-ITQRETIRTALA-MGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGV 108 (242)
Q Consensus 31 ~~~~-~~a~e~Lr~aLa-~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgi 108 (242)
..|+ ..+.+.||++++ +|+|+.+++ +++.+...+|..++++|++++++.+||++|.+-.
T Consensus 39 ~~G~~~~~~~~l~~~l~~~G~d~v~~~--~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t----------------- 99 (164)
T PF01012_consen 39 VLGPAEEAAEALRKALAKYGADKVYHI--DDPALAEYDPEAYADALAELIKEEGPDLVLFGST----------------- 99 (164)
T ss_dssp EEETCCCHHHHHHHHHHSTTESEEEEE--E-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESS-----------------
T ss_pred EEecchhhHHHHhhhhhhcCCcEEEEe--cCccccccCHHHHHHHHHHHHHhcCCCEEEEcCc-----------------
Confidence 4555 678999999999 999999999 4566777899999999999999999999998864
Q ss_pred CCcCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEc
Q psy10640 109 DTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVK 188 (242)
Q Consensus 109 d~s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~ 188 (242)
+.+ .+++++||..||||+++.+++++.+|+.++++|...+|....+++
T Consensus 100 -----------------------------~~g---~~la~~lA~~L~~~~v~~v~~l~~~~~~~~~~r~~~gG~~~~~~~ 147 (164)
T PF01012_consen 100 -----------------------------SFG---RDLAPRLAARLGAPLVTDVTDLEVEDGGLVVTRPVYGGKVVATVR 147 (164)
T ss_dssp -----------------------------HHH---HHHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred -----------------------------CCC---CcHHHHHHHHhCCCccceEEEEEECCCeEEEEEECCCCEEEEEEE
Confidence 222 459999999999999999999999999999999999999888888
Q ss_pred CC---eEEEEeCCCCCC
Q psy10640 189 LP---AVISADLRLNEP 202 (242)
Q Consensus 189 lP---avis~~~~~~~p 202 (242)
+| +|+++..+.++|
T Consensus 148 ~~~~~~v~tv~~g~f~P 164 (164)
T PF01012_consen 148 LPSPPAVVTVRPGAFEP 164 (164)
T ss_dssp CSSSSEEEEE-TTSS--
T ss_pred CCCCCEEEEEeCCCcCc
Confidence 88 999999998877
No 12
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=99.14 E-value=6.4e-10 Score=92.88 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=94.8
Q ss_pred ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCC
Q psy10640 31 QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDT 110 (242)
Q Consensus 31 ~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~ 110 (242)
..|+.... ..++++++|+|+.+++ +++.+...+|...+++|++++++.+||++|.+--
T Consensus 35 ~~G~~~~~-~~~~~~~~Gad~v~~~--~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t------------------- 92 (168)
T cd01715 35 VIGSGAEA-VAAALKAYGADKVLVA--EDPALAHYLAEPYAPALVALAKKEKPSHILAGAT------------------- 92 (168)
T ss_pred EECCChHH-HHHHHHhcCCCEEEEe--cChhhcccChHHHHHHHHHHHHhcCCCEEEECCC-------------------
Confidence 44544433 4888899999999999 4556777889999999999999888999998874
Q ss_pred cCceEEEEeeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeEEEEEEc--
Q psy10640 111 GAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGLETIKVK-- 188 (242)
Q Consensus 111 s~~vkv~~~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~~~~~~~-- 188 (242)
..+ .+++++||..||+|+++.+++++. .++++|...+|....++.
T Consensus 93 ----------------------------~~g--~~la~rlAa~L~~~~vtdv~~l~~---~~~~~r~~~gG~~~~~~~~~ 139 (168)
T cd01715 93 ----------------------------SFG--KDLAPRVAAKLDVGLISDVTALED---DLTFTRPIYAGNALATVKSP 139 (168)
T ss_pred ----------------------------ccc--cchHHHHHHHhCCCceeeEEEEcc---CcEEEccccCceEEEEEEeC
Confidence 122 699999999999999999999966 568999999997544443
Q ss_pred -CCeEEEEeCCCCCC
Q psy10640 189 -LPAVISADLRLNEP 202 (242)
Q Consensus 189 -lPavis~~~~~~~p 202 (242)
-|+|+++..+..+|
T Consensus 140 ~~p~v~tv~~g~f~~ 154 (168)
T cd01715 140 DRPKVATVRPGAFPA 154 (168)
T ss_pred CCCeEEEEcCCcccC
Confidence 49999998887664
No 13
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=97.57 E-value=0.0013 Score=61.77 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=83.1
Q ss_pred HHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCC-CcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCC
Q psy10640 44 ALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKV-DMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDP 122 (242)
Q Consensus 44 aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~y-d~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P 122 (242)
+.+.|+|+.++++. +.++ .++-..+++|++++++.++ +.+|-+--
T Consensus 44 ~~~~Gad~V~~~~~--~~~~-~~~e~~~~al~~~i~~~~p~~~vl~~~T------------------------------- 89 (313)
T PRK03363 44 AIQLGANHVWKLSG--KPDD-RMIEDYAGVMADTIRQHGADGLVLLPNT------------------------------- 89 (313)
T ss_pred HHhcCCCEEEEecC--cccc-cChHHHHHHHHHHHHhhCCCcEEEEcCC-------------------------------
Confidence 45789999999854 3233 6677888899998888776 56654432
Q ss_pred CCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEcC-CeEEEEeCCC
Q psy10640 123 PVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVKL-PAVISADLRL 199 (242)
Q Consensus 123 ~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~l-Pavis~~~~~ 199 (242)
..+ .+.+++||..|+.++++.+++++++++.+.+.|..-+|. .++++.. |.++++..+.
T Consensus 90 ----------------~~G--r~laprlAa~l~~gl~~D~~~l~~~~~~l~~~rp~~gG~~~a~~~~~~~~~v~tvrpg~ 151 (313)
T PRK03363 90 ----------------RRG--KLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGT 151 (313)
T ss_pred ----------------ccH--HHHHHHHHHHhCCCcccceEEEEecCCCcEEEEeccCCcEEEEEEECCCCeEEEECCCC
Confidence 223 689999999999999999999998888888899999995 4556544 7899998876
Q ss_pred CCCC
Q psy10640 200 NEPR 203 (242)
Q Consensus 200 ~~pr 203 (242)
.+|.
T Consensus 152 f~~~ 155 (313)
T PRK03363 152 FDAA 155 (313)
T ss_pred ccCC
Confidence 6543
No 14
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=97.54 E-value=0.0019 Score=60.64 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=82.4
Q ss_pred HHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCC
Q psy10640 44 ALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPP 123 (242)
Q Consensus 44 aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~ 123 (242)
..+.|+|+.++++.++ .. .++-..+.++++++++.+|+.+|-+--
T Consensus 44 l~~~Gad~V~~~~~~~-~~--~~~e~~~~al~~~i~~~~P~~vL~~~T-------------------------------- 88 (312)
T PRK11916 44 VMPYGPKCIYVLEQND-AL--QRTENYAESIAALLKDKHPAMLLLAAT-------------------------------- 88 (312)
T ss_pred HHhcCCCEEEEeCCcc-cc--cChHHHHHHHHHHHHhcCCCEEEECCC--------------------------------
Confidence 3467999999985432 22 236677889999888877766665431
Q ss_pred CCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEc-CCeEEEEeCCCC
Q psy10640 124 VRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVK-LPAVISADLRLN 200 (242)
Q Consensus 124 ~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~-lPavis~~~~~~ 200 (242)
..+ .+.+++||..|+.++++.+++++.+++.+.+.|..-+|. .++.++ -|+++++..+..
T Consensus 89 ---------------~~G--rdla~rlAarL~~gl~~d~~~l~~~~~~~~~~rp~~gG~~~a~i~~~~~p~v~tvrpg~f 151 (312)
T PRK11916 89 ---------------KRG--KALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQ 151 (312)
T ss_pred ---------------cch--HHHHHHHHHHhCCCcccceEEEEecCCCeEEEEEcCCCcEEEEEEECCCCeEEEECCCCc
Confidence 223 589999999999999999999999888888899888884 566664 489999998876
Q ss_pred CCC
Q psy10640 201 EPR 203 (242)
Q Consensus 201 ~pr 203 (242)
+|.
T Consensus 152 ~~~ 154 (312)
T PRK11916 152 EPC 154 (312)
T ss_pred CCC
Confidence 544
No 15
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=97.24 E-value=0.0038 Score=58.80 Aligned_cols=115 Identities=29% Similarity=0.303 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEE
Q psy10640 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVT 118 (242)
Q Consensus 39 e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~ 118 (242)
..-.++...|+|..+.++. ..++...+-..+.+|.+.+++..+|.+|-+=-
T Consensus 39 ~~~~~~~~~Gad~v~~~~~--~~~~~~~~e~~~~~l~~l~~~~~p~~il~~aT--------------------------- 89 (313)
T COG2025 39 GAAAAAKAYGADKVLVAEG--PELANYLPEPYADALVDLAKKYKPDVVLLPAT--------------------------- 89 (313)
T ss_pred HHHHHHhhcCCCEEEEEcc--cchhccchhHHHHHHHHHHHhcCCCEEEEcCC---------------------------
Confidence 4456677899999999953 45555567778889999888876666654431
Q ss_pred eeCCCCCCCceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEE--cCCeEEE
Q psy10640 119 VEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKV--KLPAVIS 194 (242)
Q Consensus 119 ~~~P~~R~aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~--~lPavis 194 (242)
..+ .+.++++|..|+.++++.+++++..++ ++.+|.+-+|. .+++. +-|.|++
T Consensus 90 --------------------~~G--k~la~rvAa~l~~~~~~D~~~l~~~~~-l~~~Rp~ygG~~i~~~~~~~~~~~v~T 146 (313)
T COG2025 90 --------------------TNG--KELAPRVAARLDVGLIADVTSLDVGDG-LTFTRPIYGGNAIATVISPSGRPAVIT 146 (313)
T ss_pred --------------------Cch--HHHHHHHHHHcCCCceEEEEEEEcCCc-cEEEeeccccceeEEEecCCCCceEEE
Confidence 122 489999999999999999999999999 99999999996 45553 4599999
Q ss_pred EeCCCCCCCCC
Q psy10640 195 ADLRLNEPRYA 205 (242)
Q Consensus 195 ~~~~~~~pr~~ 205 (242)
+..+.-++.-+
T Consensus 147 vr~g~~~~~~~ 157 (313)
T COG2025 147 VRPGVFAAAAA 157 (313)
T ss_pred EcccccCCCCC
Confidence 99887665333
No 16
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=96.99 E-value=0.013 Score=56.00 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=78.3
Q ss_pred cCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchhhhhhhcCCCcceeCCCCCCCCCcCceEEEEeeCCCCCC
Q psy10640 47 MGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQ 126 (242)
Q Consensus 47 ~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~gImkAKKKpIe~vslaDLgid~s~~vkv~~~~~P~~R~ 126 (242)
.|+|+.+++ .++.++..++-..++++++++++.+++.+|-+--
T Consensus 84 ~Gad~V~~~--~~~~l~~y~~e~~a~al~~li~~~~P~~vL~~~T----------------------------------- 126 (356)
T PLN00022 84 PSVSEVLVA--DSDKLTHPLAEPWAKLVVLAQQKGGYSHILAAST----------------------------------- 126 (356)
T ss_pred CCCCEEEEe--cCchhcccChHHHHHHHHHHHHhcCCCEEEECCC-----------------------------------
Confidence 499999998 4556666678888999999999888877665442
Q ss_pred CceeecCccccccCCCCCchHHHHHHHhCCCcccceeEEEEeCCEEEEEEEeCCeE--EEEEEc--CCeEEEEeCCCCC
Q psy10640 127 AGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQATFASKVDKTDGELTVKREIDGGL--ETIKVK--LPAVISADLRLNE 201 (242)
Q Consensus 127 aG~ileda~~Lsld~~~~~~~~~LA~~L~~p~~t~~~~~~~~~~~~~v~r~~~~g~--~~~~~~--lPavis~~~~~~~ 201 (242)
..+ .+.+++||..|+.++++.++.++ +++ . ..|..-+|. .++.++ .|+++++..+.-+
T Consensus 127 ------------~~G--rdlApRlAarL~~gl~aD~~~l~-~~~-~-~~rp~~gG~~~a~i~~~~~~p~~~Tvrpg~f~ 188 (356)
T PLN00022 127 ------------SFG--KNVLPRAAALLDVSPITDVVRIL-DSN-T-FVRPIYAGNALATVRYKGSGPCMLSIRPTSFP 188 (356)
T ss_pred ------------Cch--hHHHHHHHHHhCCCeecCEEEEc-CCC-e-EEEEecCCcEEEEEEeCCCCcEEEEECCCccc
Confidence 223 68999999999999999999996 333 3 778888884 566663 4899999877654
No 17
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=96.85 E-value=0.00045 Score=60.12 Aligned_cols=76 Identities=25% Similarity=0.197 Sum_probs=46.3
Q ss_pred CchhHHHHHHhCCcccccccceeecccc---ccCcchHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHH
Q psy10640 3 GAFPSIWRQRQGIRQFTTSSSLSEAEKS---QQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQ 79 (242)
Q Consensus 3 ~~~~~~~~~~~~~~~~t~~~~l~~~~~~---~~~~~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~ 79 (242)
..+++.+|.+||+|.+|.|.+++.+++. ++........ .... ....+.+....|+
T Consensus 124 rdlaprlAarLga~lvsdv~~l~~~~~~~~~~r~~~gG~~~----~~~~--~p~VitVr~g~f~---------------- 181 (202)
T cd01714 124 GQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGGVET----VEVK--LPAVITVDLGINE---------------- 181 (202)
T ss_pred CcHHHHHHHHhCCCccceEEEEEEeCCEEEEEEEcCCcEEE----EEec--CCEEEEEECCCCC----------------
Confidence 3689999999999999999999876542 1111111100 0001 1222222222221
Q ss_pred hcCCCcchhhhhhhcCCCcceeC
Q psy10640 80 EEKVDMVIVGKQKAKKKPIKKVS 102 (242)
Q Consensus 80 ~~~yd~iL~gImkAKKKpIe~vs 102 (242)
++. |.+++||+|+||||++|+
T Consensus 182 -~~~-~~~~~~~~a~~~~~~~~~ 202 (202)
T cd01714 182 -PRY-PSLPGIMKAKKKPIEVVS 202 (202)
T ss_pred -CCC-CCHHHHHHhcCCCCEeeC
Confidence 233 779999999999999985
No 18
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=74.42 E-value=0.84 Score=38.30 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=24.4
Q ss_pred CCchhHHHHHHhCCcccccccceeeccc
Q psy10640 2 TGAFPSIWRQRQGIRQFTTSSSLSEAEK 29 (242)
Q Consensus 2 t~~~~~~~~~~~~~~~~t~~~~l~~~~~ 29 (242)
+..+++.+|.+||+|.+|.|.+++.+++
T Consensus 103 g~~la~rlA~~L~~~~vsdv~~l~~~~~ 130 (181)
T cd01985 103 GKQLAPRVAALLGVPQISDVTKLEIDGG 130 (181)
T ss_pred ccCHHHHHHHHhCCCcceeEEEEEEeCC
Confidence 3578999999999999999999987653
No 19
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=45.97 E-value=12 Score=30.78 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.0
Q ss_pred hhHHHHHHhCCcccccccceeeccc
Q psy10640 5 FPSIWRQRQGIRQFTTSSSLSEAEK 29 (242)
Q Consensus 5 ~~~~~~~~~~~~~~t~~~~l~~~~~ 29 (242)
+++.+|.+||+|.+|.+.+++.+++
T Consensus 105 la~~lA~~L~~~~v~~v~~l~~~~~ 129 (164)
T PF01012_consen 105 LAPRLAARLGAPLVTDVTDLEVEDG 129 (164)
T ss_dssp HHHHHHHHHT-EEEEEEEEEEEETT
T ss_pred HHHHHHHHhCCCccceEEEEEECCC
Confidence 6899999999999999999999764
No 20
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=36.68 E-value=66 Score=25.05 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHHHHHhcCCCcchh
Q psy10640 35 ITQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIV 88 (242)
Q Consensus 35 ~~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~~i~~~~yd~iL~ 88 (242)
.+-.|..+.+-.+|+++.+.+...|..+...+...+...|.+.+++.++|.++.
T Consensus 53 ~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t 106 (128)
T PF02585_consen 53 IRRAEARAAAEILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFT 106 (128)
T ss_dssp HHHHHHHHHHHHCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEE
T ss_pred HHHHHHHHHHHHcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEE
Confidence 456677777777999888888888766655345667778888888888877653
No 21
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=26.89 E-value=1.6e+02 Score=29.44 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=15.3
Q ss_pred CchHHHHHHHhCCCcccce
Q psy10640 144 NQTAQMTAAFLNWPQATFA 162 (242)
Q Consensus 144 ~~~~~~LA~~L~~p~~t~~ 162 (242)
.+.-.++|+.||+|++|.-
T Consensus 213 ~~~l~~lae~~~~PV~tt~ 231 (579)
T TIGR03457 213 VEECKALAERLGAPVVNSY 231 (579)
T ss_pred HHHHHHHHHHhCCCEEEcc
Confidence 4556799999999999753
No 22
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=26.54 E-value=2.7e+02 Score=24.84 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=49.2
Q ss_pred hhHHHHHH--hCCcccccccceeeccccccCcc------hHHHHHHHHHHcCCCeEEEEeecCCCcCCCCHHHHHHHHHH
Q psy10640 5 FPSIWRQR--QGIRQFTTSSSLSEAEKSQQHTI------TQRETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAK 76 (242)
Q Consensus 5 ~~~~~~~~--~~~~~~t~~~~l~~~~~~~~~~~------~a~e~Lr~aLa~GaD~~~~v~~~~~~~~~~~p~~~A~vLa~ 76 (242)
+.+.++.+ +|.+..-.|-+.-+.+. .+.. +..|..+.+-.+|++..+.+...+ .++..++-.+...|.+
T Consensus 27 ~ggtla~~~~~G~~V~v~~lT~Ge~g~--~~~~~~l~~~R~~E~~~a~~~LGv~~~~~l~~~~-~~~~~~~~~~~~~L~~ 103 (237)
T COG2120 27 CGGTLAKLAARGVEVTVVCLTLGEAGE--NGGELELGAVRRAEARAAARVLGVRETIFLGFPD-TGADADPEEITGALVA 103 (237)
T ss_pred cHHHHHHHHHCCCeEEEEEccCCcccc--cCCccchHHHHHHHHHHHHHhcCCCcceecCCCc-cccccChHHHHHHHHH
Confidence 34555655 34555533333333332 2333 667777777779999877774432 4455677777878999
Q ss_pred HHHhcCCCcch
Q psy10640 77 VAQEEKVDMVI 87 (242)
Q Consensus 77 ~i~~~~yd~iL 87 (242)
++++.++|.+|
T Consensus 104 ii~~~~P~~V~ 114 (237)
T COG2120 104 IIRRLRPDVVF 114 (237)
T ss_pred HHHHhCCCEEE
Confidence 88888877544
No 23
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=24.21 E-value=46 Score=27.64 Aligned_cols=24 Identities=4% Similarity=0.116 Sum_probs=21.8
Q ss_pred CchhHHHHHHhCCcccccccceee
Q psy10640 3 GAFPSIWRQRQGIRQFTTSSSLSE 26 (242)
Q Consensus 3 ~~~~~~~~~~~~~~~~t~~~~l~~ 26 (242)
.-+++.+|.+||+|.+|.|.+++.
T Consensus 96 ~~la~rlAa~L~~~~vtdv~~l~~ 119 (168)
T cd01715 96 KDLAPRVAAKLDVGLISDVTALED 119 (168)
T ss_pred cchHHHHHHHhCCCceeeEEEEcc
Confidence 468899999999999999999976
Done!