RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10640
         (242 letters)



>1efv_B Electron transfer flavoprotein; electron transport, glutaric
           acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
           SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
          Length = 255

 Score =  204 bits (522), Expect = 3e-66
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 46/174 (26%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           ETIRTALAMGADRGIHVEV   E E L P  ++++LAK+A++EKVD+V++GKQ       
Sbjct: 73  ETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------- 125

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AIDDD NQT QMTA FL+WPQ
Sbjct: 126 ---------------------------------------AIDDDCNQTGQMTAGFLDWPQ 146

Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
            TFAS+V     +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK
Sbjct: 147 GTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMK 200



 Score = 65.3 bits (160), Expect = 6e-13
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 92  KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           KAKKK I+ + P D+GVD  + + +++VEDPP R AG  V   + L 
Sbjct: 200 KAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLV 246


>1efp_B ETF, protein (electron transfer flavoprotein); electron transport,
           glutaric acidemia type II; HET: FAD AMP; 2.60A
           {Paracoccus denitrificans} SCOP: c.26.2.3
          Length = 252

 Score =  202 bits (516), Expect = 2e-65
 Identities = 77/174 (44%), Positives = 96/174 (55%), Gaps = 46/174 (26%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           ET+RTALAMGADR I V  +    + ++P  ++KILA VA+ E  +++I GKQ       
Sbjct: 70  ETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------- 122

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  AID+D N T QM AA L W Q
Sbjct: 123 ---------------------------------------AIDNDMNATGQMLAAILGWAQ 143

Query: 159 ATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMK 212
           ATFASKV+    +  V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK
Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMK 197



 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 92  KAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           KAKKKP+ + +  D GVD    +E+V+V +P  R+AG  V  VD L 
Sbjct: 197 KAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDELV 243


>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET:
           AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
           c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C*
           3clt_C* 3clu_C*
          Length = 264

 Score =  195 bits (498), Expect = 1e-62
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 51/177 (28%)

Query: 39  ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           E++R  LA GADR + V       E      + +IL +V ++E  DMV  G Q       
Sbjct: 71  ESLRKCLAKGADRAVRVWD--DAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ------- 121

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
                                                  + D     T    A++LNWP 
Sbjct: 122 ---------------------------------------SSDQAYASTGISVASYLNWPH 142

Query: 159 ATFASKV--DKTDGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNIMK 212
           A   + +     D +  ++RE++GG L+ +++  PAV++  L +N+PRYA+L  I +
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQ 199



 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 92  KAKKKPIKKVSPKDMGVD------TGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
           +A  KPI++VS  D+G+         +   +  +  P   +A  I   +   A
Sbjct: 199 QAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQA 251


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 43/239 (17%), Positives = 68/239 (28%), Gaps = 94/239 (39%)

Query: 14  GIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQ------- 66
            I   T         K+  H +   + +  +L  GA     V VSGP  ++L        
Sbjct: 340 SISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKN--LV-VSGP-PQSLYGLNLTLR 394

Query: 67  -------------------------------PFHISKILAKVAQEEKVDMVIVGKQKAKK 95
                                          PFH S +L   +     D+         K
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDL--------VK 445

Query: 96  KPIKKVSPKDMGV---DTGAHIEIVTVEDPPVRQ-AGSIVPDVDTLAIDDDSNQTAQMTA 151
             +   + KD+ +   DT          D  +R  +GSI   +    +D        +  
Sbjct: 446 NNVS-FNAKDIQIPVYDT------FDGSD--LRVLSGSISERI----VD-------CIIR 485

Query: 152 AFLNWPQATFASK---VD------KTDGELTVKREIDG-GLETIKVKLPAVISADLRLN 200
             + W   T       +D         G LT  R  DG G+  I       ++  L +N
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLT-HRNKDGTGVRVI-------VAGTLDIN 536



 Score = 29.2 bits (65), Expect = 1.3
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 44/130 (33%)

Query: 129 SIVPDV-DTLAIDDDSNQTAQMTAAFLNWPQATF-ASKVDKTDGEL-------------- 172
            I+P+  +  A DD+    A++   FL      + +S V+ +                  
Sbjct: 39  KILPEPTEGFAADDEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFEN 93

Query: 173 ---------TVKREIDGGLETIKVKLPAVI----SADLRLNEPRY-----ATLPNIMKSQ 214
                     +  ++    +T  VK   +I    +A +    P       A    + +  
Sbjct: 94  CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153

Query: 215 -----VFCGQ 219
                +F GQ
Sbjct: 154 AQLVAIFGGQ 163


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.2 bits (80), Expect = 0.016
 Identities = 28/208 (13%), Positives = 58/208 (27%), Gaps = 65/208 (31%)

Query: 65  LQPF-------HISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIV 117
              F        +  +   +  +E++D +I+             S       +G      
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-------------SKDA---VSGTLRLFW 69

Query: 118 TVEDPPVRQAGSIVPDVDTL-------AIDDDSNQTAQMTAAFLNWPQATFASKVDK--T 168
           T+           V +V  +        I  +  Q + MT          +  + D+   
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR--------MYIEQRDRLYN 121

Query: 169 DGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIM----KS----------- 213
           D ++  K  +     +       +  A L L   +   + + +    K+           
Sbjct: 122 DNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYK 175

Query: 214 --QVFCGQI--LNQMKVKPPSSVMEQLQ 237
                  +I  LN      P +V+E LQ
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQ 203


>3dlo_A Universal stress protein; unknown function, structural genomics,
           PSI-2, protein struct initiative, midwest center for
           structural genomics; HET: MSE; 1.97A {Archaeoglobus
           fulgidus} PDB: 3qtb_A*
          Length = 155

 Score = 29.2 bits (66), Expect = 0.62
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVG 89
           +ET+  A+++    G   E                 +   A E     +++G
Sbjct: 77  KETLSWAVSIIRKEGAEGEEHLLVRGK----EPPDDIVDFADEVDAIAIVIG 124


>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
           genomics, unknown function; HET: MSE; 2.95A {Bacillus
           subtilis} SCOP: c.77.1.4
          Length = 345

 Score = 29.8 bits (68), Expect = 0.71
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 40  TIRTAL-AMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
           ++R A+ AMG D      + G             ++  +   + + + +VG +   +  +
Sbjct: 2   SLRIAVDAMGGDHAPKAVIDG-------------VIKGIEAFDDLHITLVGDKTTIESHL 48

Query: 99  KKVSPKDMGVDTGAHIEIVTVEDPPVR 125
              S +   +      E++   D PVR
Sbjct: 49  TTTSDRITVLHAD---EVIEPTDEPVR 72


>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein;
           HET: ATP; 1.90A {Halomonas elongata}
          Length = 147

 Score = 28.7 bits (65), Expect = 0.85
 Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPF-HISKILAKVAQEEKVDMVIVG 89
           ++           R   + V   +          S+ + + A++ + D+V++G
Sbjct: 65  KDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIG 117


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 1.1
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 16/46 (34%)

Query: 11 QRQGIRQFTTSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVE 56
          ++Q +++   S  L   + +             ALA+ A     +E
Sbjct: 18 EKQALKKLQASLKLYADDSA------------PALAIKAT----ME 47



 Score = 28.4 bits (62), Expect = 1.4
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 94  KKKPIKKV--SPKDMGVDTGAHIEI-VTVE 120
           +K+ +KK+  S K    D+   + I  T+E
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATME 47


>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; NMR {Homo sapiens}
          Length = 119

 Score = 27.4 bits (62), Expect = 1.8
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 117 VTV-EDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQA---TFASKVDKTDGEL 172
             + E+      G+ +  +   A D D     Q+   F    ++        +D+T G L
Sbjct: 21  ADLAENSAP---GTPILQLR--AADLDVGVNGQIEYVFGAATESVRRLLR--LDETSGWL 73

Query: 173 TVKREID 179
           +V   ID
Sbjct: 74  SVLHRID 80


>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
          emerald biostructures, ALS collaborative
          crystallography; 2.15A {Ehrlichia chaffeensis}
          Length = 442

 Score = 27.8 bits (63), Expect = 3.2
 Identities = 5/16 (31%), Positives = 14/16 (87%)

Query: 74 LAKVAQEEKVDMVIVG 89
          + +V ++EK+++V++G
Sbjct: 75 VIQVCKKEKIELVVIG 90


>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical
           protein, structural genomics, functional assignment;
           HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP:
           c.26.2.4
          Length = 162

 Score = 26.9 bits (60), Expect = 3.9
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVG 89
           +  +        D G  V+      + +      + + K+A++E VD++I+G
Sbjct: 82  KNKMENIKKELEDVGFKVK------DIIVVGIPHEEIVKIAEDEGVDIIIMG 127


>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
          synthetase, GAR synthetase, ATP B purine nucleotide
          biosynthetic pathway; HET: ATP; 1.80A {Aquifex
          aeolicus} PDB: 2yya_A
          Length = 424

 Score = 27.4 bits (62), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 74 LAKVAQEEKVDMVIVG 89
          LA+ A+ E VD  IVG
Sbjct: 54 LAEFAKNEGVDFTIVG 69


>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN
          structural genomics of infectious diseases, csgid; HET:
          MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
          Length = 431

 Score = 27.4 bits (62), Expect = 4.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 74 LAKVAQEEKVDMVIVG 89
          L   AQ   + + IVG
Sbjct: 59 LLAFAQSHDIGLTIVG 74


>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein,
           USP domain, nucleotide binding domain, AMP; HET: MSE
           AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
          Length = 175

 Score = 26.7 bits (59), Expect = 4.9
 Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 38  RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVG 89
              +   +    + G+  E        ++      ++ +  +  + D ++VG
Sbjct: 86  LHLLEFFVNKCHEIGVGCEA------WIKTGDPKDVICQEVKRVRPDFLVVG 131


>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
          synthetase, GAR synthetase; HET: AMP; 1.90A
          {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
          Length = 451

 Score = 27.5 bits (62), Expect = 5.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 74 LAKVAQEEKVDMVIVG 89
          L + A+++ +D+ IVG
Sbjct: 75 LVQFAKQQAIDLTIVG 90


>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus
           influenzae} SCOP: c.26.2.4
          Length = 141

 Score = 26.5 bits (59), Expect = 5.3
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 20  TSSSLSEAEKSQQHTITQRETIRTALAMGADRGIHVEVSGPEYETLQPF-HISKILAKVA 78
             S L         +  Q            D    V+   P  E L     + ++L+   
Sbjct: 41  NFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDY--PISEKLSGSGDLGQVLSDAI 98

Query: 79  QEEKVDMVIVG 89
           ++  VD+++ G
Sbjct: 99  EQYDVDLLVTG 109


>3loq_A Universal stress protein; structural genomics, PSI-2, protein
           structure initiative, MI center for structural genomics,
           MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
          Length = 294

 Score = 27.0 bits (60), Expect = 6.0
 Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 16/59 (27%)

Query: 38  RETIRTALAMGADRGIHVEVS-----GPEYETLQPFHISKILAKVAQEEKVDMVIVGKQ 91
            E +          GI  EV      G     +           +   E    + +G +
Sbjct: 85  EEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI-----------IKASENYSFIAMGSR 132


>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target,
           NYSGXRC, PSI, protein structure initiative; 2.40A
           {Mycobacterium tuberculosis} SCOP: c.26.2.4
          Length = 163

 Score = 26.5 bits (59), Expect = 6.4
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 38  RETIRTALAMGADRGI-HVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVG 89
            E +  A     + G  +VE      E          L  +A EEK D+++VG
Sbjct: 80  YEILHDAKERAHNAGAKNVE------ERPIVGAPVDALVNLADEEKADLLVVG 126


>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
          nucleotid structural genomics, NPPSFA; 2.80A {Thermus
          thermophilus}
          Length = 417

 Score = 27.0 bits (61), Expect = 6.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 74 LAKVAQEEKVDMVIVG 89
          LA  A  E +D+ +VG
Sbjct: 53 LADWALAEGIDLTLVG 68


>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO
          JCSG, protein structure initiative, PSI, joint center
          for S genomics; 2.30A {Thermotoga maritima} SCOP:
          b.84.2.1 c.30.1.1 d.142.1.2
          Length = 412

 Score = 27.1 bits (61), Expect = 6.7
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 74 LAKVAQEEKVDMVIVG 89
             +    + D+VI G
Sbjct: 62 EKTLKAIPEEDIVIPG 77


>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
           hydrolas binding complex; 2.40A {Helicobacter pylori}
           SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
          Length = 330

 Score = 27.0 bits (60), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 35  ITQRETIRTALAMGADRGIHVEVSGPE-YETLQ 66
           IT  + +++ L M  DR I  E+   E Y+   
Sbjct: 227 ITSADCLKSCLRMRPDRIILGELRSSEAYDFYN 259


>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
          synthesis, enzyme, protein-ATP complex, structural GE
          structural genomics consortium, SGC; HET: ATP; 2.45A
          {Homo sapiens}
          Length = 452

 Score = 26.7 bits (60), Expect = 7.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 74 LAKVAQEEKVDMVIVG 89
          LA+  +E+K++ V+VG
Sbjct: 80 LAQFCKEKKIEFVVVG 95


>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
          binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
          2xd4_A*
          Length = 422

 Score = 26.7 bits (60), Expect = 8.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 74 LAKVAQEEKVDMVIVG 89
          L   A++ +V + IVG
Sbjct: 54 LVSFAKQNQVGLTIVG 69


>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
           adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
           musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
          Length = 880

 Score = 26.8 bits (59), Expect = 9.6
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 17/80 (21%)

Query: 113 HIEIVTVEDPPV-------------RQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQA 159
            + +  V + P                 G  +  +  +A D D  Q  +++    N P  
Sbjct: 475 TVTVEDVNEAPFFVPAVSRVDVSEDLSRGEKIISL--VAQDPDKQQIQKLSYFIGNDPAR 532

Query: 160 TFASKVDKTDGELTVKREID 179
                V+K +G +T    +D
Sbjct: 533 WL--TVNKDNGIVTGNGNLD 550


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,509,841
Number of extensions: 206741
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 55
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)