RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10640
(242 letters)
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
flavoprotein ETFP {Paracoccus denitrificans [TaxId:
266]}
Length = 246
Score = 107 bits (269), Expect = 4e-29
Identities = 77/177 (43%), Positives = 98/177 (55%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
ET+RTALAMGADR I V + + ++P ++KILA VA+ E +++I GKQ
Sbjct: 69 AETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQ------ 122
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AID+D N T QM AA L W
Sbjct: 123 ----------------------------------------AIDNDMNATGQMLAAILGWA 142
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
QATFASKV+ + V RE+DGGL+TI V LPAV++ADLRLNEPRYA+LPNIMK++
Sbjct: 143 QATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAK 199
Score = 55.8 bits (134), Expect = 4e-10
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 84 DMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
+ KAKKKP+ + + D GVD +E+V+V +P R+AG V VD L
Sbjct: 189 YASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVDELV 243
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 107 bits (269), Expect = 5e-29
Identities = 91/177 (51%), Positives = 113/177 (63%), Gaps = 46/177 (25%)
Query: 38 RETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKP 97
+ETIRTALAMGADRGIHVEV E E L P ++++LAK+A++EKVD+V++GKQ
Sbjct: 69 QETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQ------ 122
Query: 98 IKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWP 157
AIDDD NQT QMTA FL+WP
Sbjct: 123 ----------------------------------------AIDDDCNQTGQMTAGFLDWP 142
Query: 158 QATFASKVDKTDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPNIMKSQ 214
Q TFAS+V +L V+REIDGGLET+++KLPAV++ADLRLNEPRYATLPNIMK++
Sbjct: 143 QGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAK 199
Score = 57.3 bits (138), Expect = 1e-10
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 84 DMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
+ KAKKK I+ + P D+GVD + + +++VEDPP R AG V + L
Sbjct: 189 YATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLV 243
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer
flavoprotein ETFP {Methylophilus methylotrophus [TaxId:
17]}
Length = 262
Score = 73.6 bits (180), Expect = 3e-16
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 51/178 (28%)
Query: 39 ETIRTALAMGADRGIHVEVSGPEYETLQPFHISKILAKVAQEEKVDMVIVGKQKAKKKPI 98
E++R LA GADR + V E + +IL +V ++E DMV G Q
Sbjct: 71 ESLRKCLAKGADRAVRVW--DDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQ------- 121
Query: 99 KKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIVPDVDTLAIDDDSNQTAQMTAAFLNWPQ 158
+ D T A++LNWP
Sbjct: 122 ---------------------------------------SSDQAYASTGISVASYLNWPH 142
Query: 159 ATFASKVDKT--DGELTVKREIDGG-LETIKVKLPAVISADLRLNEPRYATLPNIMKS 213
A + + D + ++RE++GG L+ +++ PAV++ L +N+PRYA+L I ++
Sbjct: 143 AAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQA 200
Score = 38.2 bits (88), Expect = 4e-04
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 89 GKQKAKKKPIKKVSPKDMGVDT------GAHIEIVTVEDPPVRQAGSIVPDVDTLA 138
G ++A KPI++VS D+G+ + + + P +A I + A
Sbjct: 196 GIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRATMIEGTISEQA 251
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 27.7 bits (62), Expect = 0.43
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 82 KVDMVIV--GKQKAKKKPIKKVSPKDMGVDTGAHIEIVTV-EDPPVRQAGSIV 131
+ D VIV GK K K+ +K V + G ++ P + Q G IV
Sbjct: 4 RDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIV 56
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 28.2 bits (62), Expect = 0.76
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 7/102 (6%)
Query: 115 EIVTVEDPPVRQAGSIVPDVDTLA--IDD-----DSNQTAQMTAAFLNWPQATFASKVDK 167
I DP +R+ V D + +D + + A + Q F +
Sbjct: 4 PIRLYGDPVLRRKARPVEDFSGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYA 63
Query: 168 TDGELTVKREIDGGLETIKVKLPAVISADLRLNEPRYATLPN 209
+ E +R + + + V VI+ L E L
Sbjct: 64 DEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSL 105
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 24.9 bits (54), Expect = 5.2
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 81 EKVDMVIVGKQKAKKKPIKKVSPKDMGVDTGAHIEIVTVEDPPVRQAGSIV 131
+++M VGK K+ + VD G P ++
Sbjct: 10 ARLEMR-VGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELM 59
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.9 bits (56), Expect = 5.5
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 70 ISKILAKVAQEEKVDMVIVGKQKAKKKPIKKVSPKDMGVDTG-AHIEIVTV---EDPPVR 125
I+K LA + + K D + G K KK K + +G D H+E V + +
Sbjct: 25 INKELANIRSKFKGDKALDGYSK-KKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEK 83
Query: 126 QAGSIV--------PDVDTLAI 139
Q G + ++ L
Sbjct: 84 QIGYLFISVLVNSNSELIRLIN 105
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 24.3 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 82 KVDMVIV--GKQKAKKKPIKKVSPKDMGV 108
K D VIV GK K + + P+D V
Sbjct: 15 KGDTVIVLSGKHKGQTGKVLLALPRDQKV 43
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 24.3 bits (53), Expect = 8.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 82 KVDMVIV--GKQKAKKKPIKKVSPKDMGV 108
K D V+V GK K + +K+V PK V
Sbjct: 8 KGDTVLVASGKYKGRVGKVKEVLPKKYAV 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 824,155
Number of extensions: 35739
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 17
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)