BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10641
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1
Length = 802
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 56/82 (68%)
Query: 4 VACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIAS 63
A + +MKILLGGYQ+RA L+KQ L QI+Q Y++L TF LK E+++IPRR+
Sbjct: 710 AAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAYLELRTFEELKKHEDSAIPRRLEC 769
Query: 64 LTEDVNRQKEREAVLQERFGAL 85
L EDV RQ+ERE LQ R+ L
Sbjct: 770 LKEDVQRQQEREKELQHRYADL 791
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l
PE=1 SV=2
Length = 802
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 57/82 (69%)
Query: 4 VACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIAS 63
A + +MKILLGGYQ+RA LLKQ L QI+Q +++L TF LK E+++IPRR+
Sbjct: 710 AAKMEKKMKILLGGYQSRAMGLLKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLEC 769
Query: 64 LTEDVNRQKEREAVLQERFGAL 85
L EDV RQ+ERE LQ+R+ L
Sbjct: 770 LKEDVQRQQEREKELQQRYADL 791
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1
SV=2
Length = 802
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 4 VACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIAS 63
A + +MKILLGGYQ+RA L+KQ L QI+Q +++L TF LK E+++IPRR+
Sbjct: 710 AAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLEC 769
Query: 64 LTEDVNRQKEREAVLQERFGAL 85
L EDV RQ+ERE LQ+R+ L
Sbjct: 770 LKEDVQRQQEREKELQQRYADL 791
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1
SV=2
Length = 802
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 4 VACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIAS 63
A + +MKILLGGYQ+RA L+KQ L QI+Q +++L TF LK E+++IPRR+
Sbjct: 710 AAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLEC 769
Query: 64 LTEDVNRQKEREAVLQERFGAL 85
L EDV RQ+ERE LQ R+ L
Sbjct: 770 LKEDVQRQQEREKELQHRYADL 791
>sp|A7SD85|CDC5L_NEMVE Cell division cycle 5-related protein OS=Nematostella vectensis
GN=cdc5l PE=3 SV=1
Length = 805
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%)
Query: 13 ILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQK 72
+LLGGYQ RA L KQ L Q++Q V+++TF L+ QE +IP+R+ +L EDV RQ
Sbjct: 720 VLLGGYQTRAVGLTKQLSDLHEQLEQSQVEMTTFQALRNQELQAIPKRLEALKEDVQRQT 779
Query: 73 EREAVLQERFGAL 85
ERE LQ ++ L
Sbjct: 780 EREKQLQAQYSEL 792
>sp|P0CO94|CEF1_CRYNJ Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CEF1 PE=3 SV=1
Length = 838
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 15 LGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKER 74
LGGYQ ++ K + +I Q D+ TF LK EEA+ P R+ + E+V K+R
Sbjct: 724 LGGYQTLNEKAKKAIVDVMEEIHQTKRDMETFLMLKGIEEAAAPARLEKIREEVAVLKKR 783
Query: 75 EAVLQERFGALD-------AQLKQLE 93
E LQ R+ L+ A ++QLE
Sbjct: 784 ERDLQARYAELNDRRRENLAAIEQLE 809
>sp|P0CO95|CEF1_CRYNB Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CEF1 PE=3 SV=1
Length = 833
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 15 LGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKER 74
LGGYQ ++ K + +I Q D+ TF LK EEA+ P R+ + E+V ++R
Sbjct: 719 LGGYQTLNEKAKKAIVDVMEEIHQTKRDMETFLMLKGIEEAAAPARLEKIREEVAVLEKR 778
Query: 75 EAVLQERFGALD-------AQLKQLE 93
E LQ R+ L+ A ++QLE
Sbjct: 779 ERDLQARYAELNDRRRENLAAIEQLE 804
>sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5
PE=1 SV=2
Length = 844
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVN 69
+ K G++ RA+ + Q + Q + ++ F LK QEE + R +L E+V
Sbjct: 717 KYKTYTKGHERRAETVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNLQEEVI 776
Query: 70 RQKEREAVLQERFGALDAQLKQLE 93
+QKE E+ LQ R+G + A +++ E
Sbjct: 777 KQKETESKLQTRYGNMLAMVEKAE 800
>sp|Q4WHG0|CEF1_ASPFU Pre-mRNA-splicing factor cef1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cef1 PE=3
SV=1
Length = 792
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVN 69
++ + GGYQ RA+ L + S ++ +L+ F L+ EE++I RR+ L +DV
Sbjct: 698 KLALHYGGYQNRAKTLRTKIVEASSALENSKYELNAFQTLQISEESAISRRLEKLRDDVA 757
Query: 70 RQKEREAVLQERFGALDAQLKQLELG 95
+RE QE + +L +L G
Sbjct: 758 FVLKREREAQETYRIRKEELDELVAG 783
>sp|C8VBH3|CEF1_EMENI Pre-mRNA-splicing factor cef1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cef1
PE=3 SV=1
Length = 791
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVN 69
++ + GGYQ RA+ L + + +++ +L F L+ EEA+I RR+ L E+V
Sbjct: 697 KLALHYGGYQNRAKMLRAKITEAHTALEKSKHELDAFRTLQISEEAAISRRLEKLREEVA 756
Query: 70 RQKEREAVLQERFGALDAQLKQL 92
RE QE++ +L L
Sbjct: 757 FVMRREREAQEQYRCRKDELDDL 779
>sp|Q7SAF6|CEF1_NEUCR Pre-mRNA-splicing factor cef-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=cef-1 PE=3 SV=1
Length = 779
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVN 69
++ + LGGY+ RA+ L K+ +++ L F L++ E+A+I R+A+L E+V
Sbjct: 686 KLNLHLGGYKNRAEMLRKKISEAHEALEKANNALGAFKVLQSSEQAAIRNRLAALREEVG 745
Query: 70 --RQKEREA 76
+EREA
Sbjct: 746 FVSTREREA 754
>sp|Q52G60|CEF1_MAGO7 Pre-mRNA-splicing factor CEF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CEF1 PE=3 SV=1
Length = 773
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVN 69
++ + GGY+ RA+ L K+ + + LS F L EE +I RR+ +L E+V
Sbjct: 683 KLNLHHGGYKQRAEMLRKKIGEASEALSKANDALSAFKTLAVSEEITITRRLEALREEVA 742
Query: 70 --RQKEREA 76
++EREA
Sbjct: 743 YVSRREREA 751
>sp|Q4P652|CEF1_USTMA Pre-mRNA-splicing factor CEF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CEF1 PE=3 SV=1
Length = 820
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 14 LLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKE 73
+LGGYQAR+ LL K + + + TF +L E+ R+ SL ++V
Sbjct: 716 VLGGYQARSVALLNSTKEQFKALQEAAISRETFEYLGRGEQCGKADRLDSLRKEVESLAR 775
Query: 74 REAVLQERF 82
RE++ Q +
Sbjct: 776 RESMAQTAY 784
>sp|Q6C8F5|CEF1_YARLI Pre-mRNA-splicing factor CEF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CEF1 PE=3 SV=1
Length = 719
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 17 GYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREA 76
Y R L K+ SQ++ V+++ FS L EE +I +R A+L E+V+ ++E
Sbjct: 640 AYAKRQATLSKKLTSRWSQLESVEVEIAVFSELARMEEIAIEQRSAALQEEVDWLVKKER 699
Query: 77 VLQERF 82
Q+++
Sbjct: 700 AAQDKY 705
>sp|P62135|RAD50_NANEQ DNA double-strand break repair Rad50 ATPase OS=Nanoarchaeum
equitans (strain Kin4-M) GN=rad50 PE=3 SV=1
Length = 786
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 52 QEEASIPRRIASLTEDVNRQKEREAV------LQERFGALDAQLKQLE 93
+E+ S+ + IA L +N+ KE E + +QER G + A+LK LE
Sbjct: 358 KEKESLEKEIAELQNKINQIKELEKMEQELLEIQERIGVIKAKLKLLE 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,248,398
Number of Sequences: 539616
Number of extensions: 898817
Number of successful extensions: 4272
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4238
Number of HSP's gapped (non-prelim): 59
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)