Query psy10641
Match_columns 97
No_of_seqs 100 out of 132
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:41:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0050|consensus 99.6 8.3E-16 1.8E-20 127.1 7.6 70 4-74 548-617 (617)
2 PF05597 Phasin: Poly(hydroxya 84.8 8.1 0.00018 27.1 7.4 67 7-73 59-130 (132)
3 PF13851 GAS: Growth-arrest sp 81.3 19 0.00042 26.6 12.9 87 6-93 41-127 (201)
4 COG1196 Smc Chromosome segrega 76.7 46 0.001 30.5 11.0 75 18-92 672-749 (1163)
5 PF12128 DUF3584: Protein of u 74.7 71 0.0015 29.5 12.1 85 5-89 298-382 (1201)
6 TIGR00606 rad50 rad50. This fa 73.5 79 0.0017 29.4 11.9 87 3-90 696-782 (1311)
7 COG1382 GimC Prefoldin, chaper 73.1 17 0.00038 25.3 5.9 39 57-95 75-113 (119)
8 PRK06975 bifunctional uroporph 66.7 86 0.0019 27.2 10.4 75 16-90 340-416 (656)
9 TIGR01005 eps_transp_fam exopo 62.2 1E+02 0.0022 26.5 10.7 72 19-90 193-268 (754)
10 KOG4302|consensus 60.0 76 0.0016 28.0 8.5 76 8-90 105-184 (660)
11 PF07125 DUF1378: Protein of u 57.6 21 0.00045 22.0 3.4 25 11-35 18-42 (59)
12 PRK09841 cryptic autophosphory 55.5 1.4E+02 0.003 25.9 10.8 64 19-82 266-334 (726)
13 PRK10884 SH3 domain-containing 54.7 88 0.0019 23.4 10.4 26 17-42 90-115 (206)
14 PF00038 Filament: Intermediat 53.7 96 0.0021 23.5 9.8 73 18-90 52-134 (312)
15 PF12709 Kinetocho_Slk19: Cent 50.0 73 0.0016 21.1 6.1 21 3-23 28-48 (87)
16 PRK09039 hypothetical protein; 49.9 1.3E+02 0.0028 23.9 10.4 45 49-93 141-185 (343)
17 TIGR03007 pepcterm_ChnLen poly 49.6 1.4E+02 0.003 24.2 9.2 68 22-89 163-234 (498)
18 COG4817 DNA-binding ferritin-l 41.2 31 0.00066 23.8 2.6 26 15-40 15-40 (111)
19 TIGR02209 ftsL_broad cell divi 40.1 88 0.0019 19.1 4.9 30 64-93 29-58 (85)
20 PRK10869 recombination and rep 39.6 2.4E+02 0.0051 23.9 8.2 32 16-47 257-288 (553)
21 PF04899 MbeD_MobD: MbeD/MobD 39.0 99 0.0022 19.4 7.7 25 48-72 38-62 (70)
22 PF15619 Lebercilin: Ciliary p 39.0 1.6E+02 0.0034 21.8 11.1 70 21-90 13-92 (194)
23 PF03962 Mnd1: Mnd1 family; I 38.6 1.6E+02 0.0034 21.5 8.7 63 3-70 59-121 (188)
24 cd00632 Prefoldin_beta Prefold 38.0 1.1E+02 0.0024 19.8 10.1 38 56-93 67-104 (105)
25 PF00170 bZIP_1: bZIP transcri 37.7 88 0.0019 18.5 5.8 33 60-92 27-59 (64)
26 PF10205 KLRAQ: Predicted coil 37.4 1.3E+02 0.0029 20.4 7.5 50 17-70 23-72 (102)
27 PF14193 DUF4315: Domain of un 36.9 1.2E+02 0.0026 19.7 5.3 33 60-92 2-34 (83)
28 cd07651 F-BAR_PombeCdc15_like 35.8 1.8E+02 0.0039 21.4 11.9 37 56-92 147-183 (236)
29 COG3879 Uncharacterized protei 34.8 2.2E+02 0.0048 22.2 6.8 10 56-65 93-102 (247)
30 PF12325 TMF_TATA_bd: TATA ele 34.5 1.5E+02 0.0033 20.3 9.9 40 55-94 64-103 (120)
31 COG2433 Uncharacterized conser 34.0 3.4E+02 0.0073 24.1 12.6 79 10-88 426-510 (652)
32 TIGR02338 gimC_beta prefoldin, 33.4 1.4E+02 0.0031 19.6 11.5 79 16-94 13-109 (110)
33 PF04111 APG6: Autophagy prote 33.3 1.4E+02 0.003 23.5 5.6 38 53-90 72-109 (314)
34 PF11101 DUF2884: Protein of u 32.4 1.1E+02 0.0024 22.9 4.8 29 4-32 180-208 (229)
35 PF10234 Cluap1: Clusterin-ass 31.8 2.5E+02 0.0055 22.0 10.3 64 24-91 166-236 (267)
36 PF08287 DASH_Spc19: Spc19; I 31.6 1.8E+02 0.0039 20.7 5.5 32 55-86 64-95 (153)
37 KOG0964|consensus 31.4 4.6E+02 0.01 24.9 9.2 10 10-19 651-660 (1200)
38 PF06657 Cep57_MT_bd: Centroso 31.1 1.4E+02 0.0031 18.9 4.5 31 55-85 13-43 (79)
39 KOG2180|consensus 26.0 4.6E+02 0.0099 23.8 7.9 58 9-66 127-186 (793)
40 PF15369 KIAA1328: Uncharacter 25.9 3.6E+02 0.0079 21.9 8.8 57 29-85 10-66 (328)
41 PF10212 TTKRSYEDQ: Predicted 25.8 4.4E+02 0.0094 22.8 9.9 61 27-91 420-480 (518)
42 KOG0994|consensus 24.8 6.7E+02 0.015 24.6 9.6 85 12-96 1193-1297(1758)
43 KOG4011|consensus 24.8 3.1E+02 0.0068 22.3 6.2 58 14-77 258-315 (330)
44 PF14257 DUF4349: Domain of un 24.8 3E+02 0.0065 20.5 7.4 53 19-80 138-190 (262)
45 PF02996 Prefoldin: Prefoldin 24.7 2E+02 0.0043 18.5 5.3 36 57-92 82-117 (120)
46 COG1256 FlgK Flagellar hook-as 24.5 4E+02 0.0087 22.9 7.2 53 19-71 137-189 (552)
47 PF04120 Iron_permease: Low af 23.7 2.7E+02 0.0058 19.6 5.7 55 13-67 58-113 (132)
48 KOG1150|consensus 23.6 3.5E+02 0.0077 21.0 7.6 56 24-88 158-215 (250)
49 PF12128 DUF3584: Protein of u 23.4 6.1E+02 0.013 23.6 11.7 72 7-78 261-332 (1201)
50 PRK11519 tyrosine kinase; Prov 23.3 5E+02 0.011 22.6 10.7 61 22-82 269-334 (719)
51 TIGR00634 recN DNA repair prot 22.6 4.7E+02 0.01 22.0 10.3 31 18-48 264-294 (563)
52 PF04999 FtsL: Cell division p 22.4 2.1E+02 0.0046 18.0 4.4 32 63-94 39-70 (97)
53 KOG1937|consensus 22.2 5.1E+02 0.011 22.3 10.8 72 19-92 306-378 (521)
54 PF05546 She9_MDM33: She9 / Md 22.1 3.6E+02 0.0078 20.5 10.1 25 8-32 4-28 (207)
55 cd00890 Prefoldin Prefoldin is 22.1 2.3E+02 0.005 18.3 5.9 37 56-92 91-127 (129)
56 PF01763 Herpes_UL6: Herpesvir 22.0 3.7E+02 0.008 23.4 6.5 43 21-74 364-406 (557)
57 PF06005 DUF904: Protein of un 21.9 2.2E+02 0.0047 17.8 8.8 19 24-42 8-26 (72)
58 KOG3067|consensus 21.2 3.9E+02 0.0084 20.5 9.1 63 10-72 6-68 (226)
59 KOG4098|consensus 20.7 3.1E+02 0.0067 19.7 4.9 42 7-48 73-114 (140)
60 smart00338 BRLZ basic region l 20.4 2E+02 0.0043 16.9 5.4 32 61-92 28-59 (65)
61 PF04977 DivIC: Septum formati 20.1 2E+02 0.0044 16.9 5.0 14 25-38 22-35 (80)
No 1
>KOG0050|consensus
Probab=99.62 E-value=8.3e-16 Score=127.13 Aligned_cols=70 Identities=39% Similarity=0.550 Sum_probs=67.9
Q ss_pred HHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy10641 4 VACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKER 74 (97)
Q Consensus 4 a~KlEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~R 74 (97)
|+|+||||++++||||+| .+|+++|+++|++|+.+.+++.||..|..+|..|+|+|+++|+++|.+|+.+
T Consensus 548 ~~klekKlk~~~~gyq~r-~~l~kq~~~~~~~le~~~~e~~~f~~l~~qE~~Al~~R~~~lq~ev~~q~~~ 617 (617)
T KOG0050|consen 548 AEKLEKKLKHLLGGYQQR-EMLIKQIHHTLKALEEGQRELYTFEFLYRQEIRALPGRLERLQEEVNKQQEI 617 (617)
T ss_pred HHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 789999999999999999 9999999999999999999999999999999999999999999999998753
No 2
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=84.83 E-value=8.1 Score=27.13 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=45.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy10641 7 LCVQMKILLGGYQARAQELLKQYKVLESQIDQC-----YVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKE 73 (97)
Q Consensus 7 lEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a-----~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~ 73 (97)
++.++.-....-..++..+..++...|+.++++ ...|+.+-.-...|-.++..||..|...|..+..
T Consensus 59 ~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 59 AEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555567777777777777777764 3334445555677888899999999998887654
No 3
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.26 E-value=19 Score=26.56 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=71.9
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 6 CLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFGAL 85 (97)
Q Consensus 6 KlEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L 85 (97)
+-+................|...+..+-.+++...-.+..|..-.. --..+-.|+..+..++..+.---..|.++|..+
T Consensus 41 k~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 41 KKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677778888888999999999999999988888876544 344567889999999999999999999999999
Q ss_pred HHHHHHhh
Q psy10641 86 DAQLKQLE 93 (97)
Q Consensus 86 ~~e~~~l~ 93 (97)
..|+++|.
T Consensus 120 e~ErdeL~ 127 (201)
T PF13851_consen 120 EQERDELY 127 (201)
T ss_pred HHHHHHHH
Confidence 99999875
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.72 E-value=46 Score=30.48 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 18 YQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQ---EEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 18 Yq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~---E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
+..+...+...+..+..++.....++..+...... ....+.++++.+..++.........++.+...+..++..+
T Consensus 672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 749 (1163)
T COG1196 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEEL 749 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433322 2345667778888888877888888888888777665553
No 5
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.75 E-value=71 Score=29.50 Aligned_cols=85 Identities=9% Similarity=0.137 Sum_probs=59.1
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 5 ACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFGA 84 (97)
Q Consensus 5 ~KlEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~ 84 (97)
.+++...+-....|..+-..+...+...-..|.........|......+-.+--.++..+++++..+..+-..|...|.+
T Consensus 298 ~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~d 377 (1201)
T PF12128_consen 298 EKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQD 377 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777778888888888888888888888888888987766666666666666666666665555555555544
Q ss_pred HHHHH
Q psy10641 85 LDAQL 89 (97)
Q Consensus 85 L~~e~ 89 (97)
...+.
T Consensus 378 i~~ky 382 (1201)
T PF12128_consen 378 IESKY 382 (1201)
T ss_pred HHHHH
Confidence 44443
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.45 E-value=79 Score=29.41 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=67.6
Q ss_pred hHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 3 FVACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERF 82 (97)
Q Consensus 3 ~a~KlEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY 82 (97)
|..+|+.++.. ++........-.+.+...++.+........++..+...+-..+...+..+..++......-..+....
T Consensus 696 f~~~L~~~~~~-~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l 774 (1311)
T TIGR00606 696 FISDLQSKLRL-APDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL 774 (1311)
T ss_pred HHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667766666 46788888888889999999999999999999999888888888888888888877776655666666
Q ss_pred HHHHHHHH
Q psy10641 83 GALDAQLK 90 (97)
Q Consensus 83 ~~L~~e~~ 90 (97)
..+..+++
T Consensus 775 ~~~~~~~~ 782 (1311)
T TIGR00606 775 GTIMPEEE 782 (1311)
T ss_pred HHHHHhHH
Confidence 66655554
No 7
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=73.14 E-value=17 Score=25.26 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10641 57 IPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLELG 95 (97)
Q Consensus 57 i~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~~~ 95 (97)
+..|++.|.-.|....+-|+.+|.+|..|..+...+..+
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 568999999999999999999999999999998876443
No 8
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=66.73 E-value=86 Score=27.16 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=49.0
Q ss_pred hhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 16 GGYQ--ARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLK 90 (97)
Q Consensus 16 gGYq--~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~ 90 (97)
|||- .+...+..+|.....+.+....|...-..-...-...+..|+..|...+......-..||+.|..|...++
T Consensus 340 ~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~ 416 (656)
T PRK06975 340 GGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5673 44555666666666666666655533221122223567789999999888888888889999988754443
No 9
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.20 E-value=1e+02 Score=26.54 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---HHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 19 QARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQ---EEAS-IPRRIASLTEDVNRQKEREAVLQERFGALDAQLK 90 (97)
Q Consensus 19 q~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~---E~~A-i~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~ 90 (97)
..-..-|..+|.++-++++.+..++..|+.=... +... ...+|..+...+.........++.+|..+.....
T Consensus 193 ~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 193 TAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345678999999999999999999999873221 2222 3378888888888877777778888887766554
No 10
>KOG4302|consensus
Probab=59.98 E-value=76 Score=28.02 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=57.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 8 CVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTF----SFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFG 83 (97)
Q Consensus 8 EKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F----~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~ 83 (97)
..+|...++|+.++=..-.+.|.++..+++.-..++.+- ..+-.-|..-.-+.++.++..+. +||+.|.
T Consensus 105 l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~-------~L~~ek~ 177 (660)
T KOG4302|consen 105 LESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLN-------ELQKEKS 177 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHH-------HHHHHHH
Confidence 467888899999999999999999999999999999887 44444454444588888887775 3566665
Q ss_pred HHHHHHH
Q psy10641 84 ALDAQLK 90 (97)
Q Consensus 84 ~L~~e~~ 90 (97)
....+..
T Consensus 178 ~Rlekv~ 184 (660)
T KOG4302|consen 178 DRLEKVL 184 (660)
T ss_pred HHHHHHH
Confidence 5554443
No 11
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=57.63 E-value=21 Score=21.99 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=21.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH
Q psy10641 11 MKILLGGYQARAQELLKQYKVLESQ 35 (97)
Q Consensus 11 L~v~lgGYq~Ra~~L~kki~e~~~~ 35 (97)
|-++.|||...-.-.+++|+++..+
T Consensus 18 LYLvsGGyk~IRnY~r~Kid~aAae 42 (59)
T PF07125_consen 18 LYLVSGGYKVIRNYFRRKIDDAAAE 42 (59)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 5567799999999999999988643
No 12
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.47 E-value=1.4e+02 Score=25.94 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 19 QARAQELLKQYKVLESQIDQCYVDLSTFSFLK-----TQEEASIPRRIASLTEDVNRQKEREAVLQERF 82 (97)
Q Consensus 19 q~Ra~~L~kki~e~~~~le~a~~el~~F~~L~-----~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY 82 (97)
..-..-|.+++.++-++++.+...++.|+.=. ..|..+.-.++..++..+.....++.++..+|
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~ 334 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY 334 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455688999999999999999999999844 33555666677777777777776677766665
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.69 E-value=88 Score=23.36 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 17 GYQARAQELLKQYKVLESQIDQCYVD 42 (97)
Q Consensus 17 GYq~Ra~~L~kki~e~~~~le~a~~e 42 (97)
+-..|-..+.+++.++-+++.....+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555566666665555555433
No 14
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=53.65 E-value=96 Score=23.49 Aligned_cols=73 Identities=16% Similarity=0.301 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHhH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 18 YQARAQELLKQYKVLESQIDQCYVDLS-------TFSFLKTQE---EASIPRRIASLTEDVNRQKEREAVLQERFGALDA 87 (97)
Q Consensus 18 Yq~Ra~~L~kki~e~~~~le~a~~el~-------~F~~L~~~E---~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~ 87 (97)
|..--..++..|.++..+-.+..++.+ -|+.--..+ ...+..=+..|+.++....-.--.|+.....|..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 655555666666666555444444443 332211111 1223333445555665555555556666666655
Q ss_pred HHH
Q psy10641 88 QLK 90 (97)
Q Consensus 88 e~~ 90 (97)
+++
T Consensus 132 El~ 134 (312)
T PF00038_consen 132 ELE 134 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 15
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.02 E-value=73 Score=21.05 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=16.6
Q ss_pred hHHhHHHHHHhhhhhHHHHHH
Q psy10641 3 FVACLCVQMKILLGGYQARAQ 23 (97)
Q Consensus 3 ~a~KlEKKL~v~lgGYq~Ra~ 23 (97)
...|-|.|++.+=.||.+|-.
T Consensus 28 YssKHE~KV~~LKksYe~rwe 48 (87)
T PF12709_consen 28 YSSKHETKVKALKKSYEARWE 48 (87)
T ss_pred HhhHHHHHHHHHHhhHHHHHH
Confidence 357889999999988887744
No 16
>PRK09039 hypothetical protein; Validated
Probab=49.94 E-value=1.3e+02 Score=23.94 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=37.6
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 49 LKTQEEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 49 L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
+-.++-.|+...+.+|..++...+.+.++.|..+..|..+++...
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677778999999999999999999999999988887654
No 17
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.64 E-value=1.4e+02 Score=24.21 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 22 AQELLKQYKVLESQIDQCYVDLSTFSFLKT----QEEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQL 89 (97)
Q Consensus 22 a~~L~kki~e~~~~le~a~~el~~F~~L~~----~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~ 89 (97)
..-|.+++.++-++++.+..++..|+.=.. .....+..++..+..++...+..-..++.++..+....
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455788999999999999999999975221 23345778888888888888888788888887776543
No 18
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=41.24 E-value=31 Score=23.84 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 15 LGGYQARAQELLKQYKVLESQIDQCY 40 (97)
Q Consensus 15 lgGYq~Ra~~L~kki~e~~~~le~a~ 40 (97)
..+|++|++.|=+....++++|+.--
T Consensus 15 ~k~~e~RakkLPkdY~~aykeIqkYl 40 (111)
T COG4817 15 WKEFENRAKKLPKDYYTAYKEIQKYL 40 (111)
T ss_pred HHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 19
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.09 E-value=88 Score=19.15 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 64 LTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 64 L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
+..++......-..+|..+..|..|...|.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444555555555555555443
No 20
>PRK10869 recombination and repair protein; Provisional
Probab=39.57 E-value=2.4e+02 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy10641 16 GGYQARAQELLKQYKVLESQIDQCYVDLSTFS 47 (97)
Q Consensus 16 gGYq~Ra~~L~kki~e~~~~le~a~~el~~F~ 47 (97)
.+|...-..+...+.++...++.+..++..+.
T Consensus 257 ~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 288 (553)
T PRK10869 257 IGMDSKLSGVLDMLEEALIQIQEASDELRHYL 288 (553)
T ss_pred hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777777777775544
No 21
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=39.03 E-value=99 Score=19.44 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHH
Q psy10641 48 FLKTQEEASIPRRIASLTEDVNRQK 72 (97)
Q Consensus 48 ~L~~~E~~Ai~rRle~L~eeV~~q~ 72 (97)
....++..+++.++..|-..|..+.
T Consensus 38 ~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 38 EQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666543
No 22
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.00 E-value=1.6e+02 Score=21.76 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 21 RAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEE----------ASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLK 90 (97)
Q Consensus 21 Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~----------~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~ 90 (97)
+-..|...|.++...++....|-.+-+.++..=. .-+|.-|..-.+||.....+=+..|..+..+.....
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999998888876644 456999999999999999999999999988866544
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.55 E-value=1.6e+02 Score=21.55 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=38.5
Q ss_pred hHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy10641 3 FVACLCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNR 70 (97)
Q Consensus 3 ~a~KlEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~ 70 (97)
|.+..=+++...+..+++.-..+..+|.++-..++.+.....-. .|....-.+++.|+.++..
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKE 121 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHH
Confidence 33444455666667777777778888888887777776655444 3444444555555554443
No 24
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.01 E-value=1.1e+02 Score=19.80 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 56 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 56 Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
.+..|++.+..++.........+++...++..++.+++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999888764
No 25
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.73 E-value=88 Score=18.48 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 60 RIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 60 Rle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
.++.|...|..+...-..|...+..|..+...|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666555
No 26
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.35 E-value=1.3e+02 Score=20.38 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy10641 17 GYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNR 70 (97)
Q Consensus 17 GYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~ 70 (97)
-+|+....|...+..--..|-++..|.+++.+-..+= .+|++.|++|...
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL----~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQL----TKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4677777788888777777777777777777665543 5778877777763
No 27
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.89 E-value=1.2e+02 Score=19.69 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 60 RIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 60 Rle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
.|+.+..|+.+...+=.++|.+.+.|...+.++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888889999988887765543
No 28
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=35.77 E-value=1.8e+02 Score=21.42 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 56 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 56 Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
+.|+-++.+...+.+...-=......|.....+.+..
T Consensus 147 ~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~ 183 (236)
T cd07651 147 TWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL 183 (236)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444556677776665543
No 29
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.84 E-value=2.2e+02 Score=22.20 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q psy10641 56 SIPRRIASLT 65 (97)
Q Consensus 56 Ai~rRle~L~ 65 (97)
++.+|++.|+
T Consensus 93 ~ie~~l~~l~ 102 (247)
T COG3879 93 ALEDRLEKLR 102 (247)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.52 E-value=1.5e+02 Score=20.32 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10641 55 ASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLEL 94 (97)
Q Consensus 55 ~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~~ 94 (97)
.+...++..|+.++.....|...+=..|++-.++.++|+.
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3666788888888888888888888888888888887754
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.98 E-value=3.4e+02 Score=24.11 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=55.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSF------LKTQEEASIPRRIASLTEDVNRQKEREAVLQERFG 83 (97)
Q Consensus 10 KL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~------L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~ 83 (97)
++.-.+--|+.....|.-.+.+.-..++....+|+.|+. ....|-.+..+||+.|+-++.....+=-+|-.+..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777777777788888888888888877765 55566667778888888888777777666666666
Q ss_pred HHHHH
Q psy10641 84 ALDAQ 88 (97)
Q Consensus 84 ~L~~e 88 (97)
.+..-
T Consensus 506 ~l~k~ 510 (652)
T COG2433 506 ELRKM 510 (652)
T ss_pred HHHHH
Confidence 66543
No 32
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.40 E-value=1.4e+02 Score=19.57 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HH-------hH-HhhHHHHHHHHHHHHHHHHHHHHH
Q psy10641 16 GGYQARAQELLKQYKVLESQIDQCYVDLSTFSFL----------KT-------QE-EASIPRRIASLTEDVNRQKEREAV 77 (97)
Q Consensus 16 gGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L----------~~-------~E-~~Ai~rRle~L~eeV~~q~~REr~ 77 (97)
-.|+.....+..++...-.++..+..-+..|..| .. .| ...+..|++.+...+.........
T Consensus 13 q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~ 92 (110)
T TIGR02338 13 QQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEER 92 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665555554444444444443 21 11 246789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy10641 78 LQERFGALDAQLKQLEL 94 (97)
Q Consensus 78 lQ~rY~~L~~e~~~l~~ 94 (97)
++..+.++.....++..
T Consensus 93 l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 93 LREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998887743
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.34 E-value=1.4e+02 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 53 EEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLK 90 (97)
Q Consensus 53 E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~ 90 (97)
|...+..-+..++.+...+.+.|......|..+..+..
T Consensus 72 e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 72 EREELDQELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666655555443
No 34
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=32.40 E-value=1.1e+02 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=15.2
Q ss_pred HHhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy10641 4 VACLCVQMKILLGGYQARAQELLKQYKVL 32 (97)
Q Consensus 4 a~KlEKKL~v~lgGYq~Ra~~L~kki~e~ 32 (97)
..++|.++.-.-...+.++..+|.++..+
T Consensus 180 ~~~ie~~~~~q~~~le~~a~~lC~~l~~L 208 (229)
T PF11101_consen 180 QQQIEQEMEAQAQELEQKAQALCDSLQQL 208 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 35
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.84 E-value=2.5e+02 Score=21.99 Aligned_cols=64 Identities=22% Similarity=0.443 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy10641 24 ELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQ-------ERFGALDAQLKQ 91 (97)
Q Consensus 24 ~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ-------~rY~~L~~e~~~ 91 (97)
.+...|..+-.++++....++.. ..++.++...|+.-+.|+++.+.|=..|| +.|..+..|+..
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l----~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNL----ASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34455555555665555554443 24566777788888888888888877777 455555555543
No 36
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=31.61 E-value=1.8e+02 Score=20.70 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 55 ASIPRRIASLTEDVNRQKEREAVLQERFGALD 86 (97)
Q Consensus 55 ~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~ 86 (97)
..|..=+..+...+.++.+|+..||.+|.-..
T Consensus 64 P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~ 95 (153)
T PF08287_consen 64 PQINHLLDKAEKHLEKLQRREETLKAKCELQQ 95 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999999999997443
No 37
>KOG0964|consensus
Probab=31.41 E-value=4.6e+02 Score=24.88 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=8.0
Q ss_pred HHHhhhhhHH
Q psy10641 10 QMKILLGGYQ 19 (97)
Q Consensus 10 KL~v~lgGYq 19 (97)
|-++++|||.
T Consensus 651 kkG~lTgGy~ 660 (1200)
T KOG0964|consen 651 KKGVLTGGYE 660 (1200)
T ss_pred ccCCccccch
Confidence 3478999997
No 38
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=31.12 E-value=1.4e+02 Score=18.89 Aligned_cols=31 Identities=13% Similarity=0.346 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 55 ASIPRRIASLTEDVNRQKEREAVLQERFGAL 85 (97)
Q Consensus 55 ~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L 85 (97)
.++..-|..|++|+.-+.-.-.+||+.|..+
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~ 43 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQM 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556778888888888888888888888654
No 39
>KOG2180|consensus
Probab=25.98 E-value=4.6e+02 Score=23.85 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHhHHhh-HHHHHHHHHH
Q psy10641 9 VQMKILLGGYQARAQEL-LKQYKVLESQIDQCYVDLSTFSFLKTQEEAS-IPRRIASLTE 66 (97)
Q Consensus 9 KKL~v~lgGYq~Ra~~L-~kki~e~~~~le~a~~el~~F~~L~~~E~~A-i~rRle~L~e 66 (97)
+.|.+++|||.+=...+ ..+.+++...++--..=++.|..-...++.+ +.++|..++.
T Consensus 127 ~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~ 186 (793)
T KOG2180|consen 127 HRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKLKK 186 (793)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 67999999999877775 5679999999999988899999988777432 3333444433
No 40
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=25.89 E-value=3.6e+02 Score=21.91 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 29 YKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFGAL 85 (97)
Q Consensus 29 i~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L 85 (97)
|..+.+++....-|.+.-..--..|......+|..|.+.-.-.-.-.-.+|..|++-
T Consensus 10 i~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrec 66 (328)
T PF15369_consen 10 IANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYREC 66 (328)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444556777777888888766554333333466777654
No 41
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=25.82 E-value=4.4e+02 Score=22.79 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 27 KQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQ 91 (97)
Q Consensus 27 kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~ 91 (97)
++|.++..+++.+......|.. |-.+...|++....+......-=+.+...+..|.+|+..
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~----Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYA----ECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766666654 666777888877666666666666677777777777664
No 42
>KOG0994|consensus
Probab=24.83 E-value=6.7e+02 Score=24.62 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=48.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHh-----HH-hhHHHHHHHHHH-------HHHHH
Q psy10641 12 KILLGGYQARAQELLKQYKVLESQIDQCYVDLSTF-------SFLKTQ-----EE-ASIPRRIASLTE-------DVNRQ 71 (97)
Q Consensus 12 ~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F-------~~L~~~-----E~-~Ai~rRle~L~e-------eV~~q 71 (97)
.=.+|+|.++-..+.++|.++-+-|...++....- ..|+.+ |. ..+..+|..+.+ ++.-+
T Consensus 1193 tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesL 1272 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESL 1272 (1758)
T ss_pred ccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHH
Confidence 34568999999888888888777664333332222 222111 11 122333333322 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Q psy10641 72 KEREAVLQERFGALDAQLKQLELGD 96 (97)
Q Consensus 72 ~~REr~lQ~rY~~L~~e~~~l~~~~ 96 (97)
++--..++..|++|.+..+.++.+|
T Consensus 1273 q~~~~~l~~~~keL~e~~~~ik~sd 1297 (1758)
T KOG0994|consen 1273 QREFNGLLTTYKELREQLEKIKESD 1297 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4444567888999999888887766
No 43
>KOG4011|consensus
Probab=24.80 E-value=3.1e+02 Score=22.29 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy10641 14 LLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAV 77 (97)
Q Consensus 14 ~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~ 77 (97)
+.-|.+++...+-+.+.++.+. +...-..|.. .|..|.++|..+..++...+...+.+
T Consensus 258 ~~~~~~sql~~~e~~l~~~~~~---~krq~dli~k---~en~~~k~r~~~~~ee~e~~e~~~~~ 315 (330)
T KOG4011|consen 258 LVMGEESQLNELEKELEDTQDT---AKRQIDLIMK---SENLALKNRFDNVLEELEEEEDEEEE 315 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHhhhccccHHHHHHHHHhhhcc
Confidence 4556666666666666666332 4555555554 89999999999999888888877654
No 44
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.76 E-value=3e+02 Score=20.51 Aligned_cols=53 Identities=13% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 19 QARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQE 80 (97)
Q Consensus 19 q~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~ 80 (97)
++|-+.+.+....+.+-++++. ...+-.+|.++|...+.+.+....+-+.|.+
T Consensus 138 ~arl~~l~~~~~rl~~ll~ka~---------~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 138 EARLKNLEAEEERLLELLEKAK---------TVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 2345567778888888888877776666554
No 45
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.71 E-value=2e+02 Score=18.51 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 57 IPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 57 i~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
+.+|+..+.+........=..++..+..+....+.+
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888777777887777777666654
No 46
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=24.47 E-value=4e+02 Score=22.89 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q psy10641 19 QARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQ 71 (97)
Q Consensus 19 q~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q 71 (97)
..+++.|..+|...+..|.........=-.....+--.+-..|..|-..+.+.
T Consensus 137 l~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 137 LSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777788888888887777766654433333333333444444444444444
No 47
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=23.71 E-value=2.7e+02 Score=19.56 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=41.4
Q ss_pred hhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q psy10641 13 ILLGGYQARA-QELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTED 67 (97)
Q Consensus 13 v~lgGYq~Ra-~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~ee 67 (97)
+++.+-|.|. +.+.-|+.++...+..+.+++-.-+.|...|-..+..+.+.+...
T Consensus 58 fLIQn~q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~ 113 (132)
T PF04120_consen 58 FLIQNTQNRDTKALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQ 113 (132)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3445555554 458899999999999999998888888888877777776665443
No 48
>KOG1150|consensus
Probab=23.61 E-value=3.5e+02 Score=20.97 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q psy10641 24 ELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQ--KEREAVLQERFGALDAQ 88 (97)
Q Consensus 24 ~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q--~~REr~lQ~rY~~L~~e 88 (97)
+++.+..-+|.+++.-. +..|..|-..|-.+=.++++.+ ..|+++-|+-|.+-++.
T Consensus 158 av~~~~mklfae~erkR---------k~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEEsRd~ 215 (250)
T KOG1150|consen 158 AVYKQVMKLFAELERKR---------KELEARANEERKRQREEEIEAEEKRKREREWQKNFEESRDG 215 (250)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45666666777776655 4567777778888888999988 77888999988776554
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.45 E-value=6.1e+02 Score=23.63 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 7 LCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVL 78 (97)
Q Consensus 7 lEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr~l 78 (97)
+++.|..+.++|..-...+...+..+-..+.....++..-..........+..++..+..++......=..+
T Consensus 261 ~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i 332 (1201)
T PF12128_consen 261 LEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEI 332 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544444444444444444444444444444444333333
No 50
>PRK11519 tyrosine kinase; Provisional
Probab=23.28 E-value=5e+02 Score=22.58 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 22 AQELLKQYKVLESQIDQCYVDLSTFSFLK-----TQEEASIPRRIASLTEDVNRQKEREAVLQERF 82 (97)
Q Consensus 22 a~~L~kki~e~~~~le~a~~el~~F~~L~-----~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY 82 (97)
..-|.+++.++-++++.+...+..|+.=. ..|..+.-..+..++.+.......+.++..+|
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y 334 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY 334 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688899999999999999999998732 12334444455555555555555555555554
No 51
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.56 E-value=4.7e+02 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10641 18 YQARAQELLKQYKVLESQIDQCYVDLSTFSF 48 (97)
Q Consensus 18 Yq~Ra~~L~kki~e~~~~le~a~~el~~F~~ 48 (97)
|......+...+.++...++.+..++..+..
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~ 294 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLD 294 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777777766544
No 52
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=22.39 E-value=2.1e+02 Score=18.00 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10641 63 SLTEDVNRQKEREAVLQERFGALDAQLKQLEL 94 (97)
Q Consensus 63 ~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~~ 94 (97)
.+..+++........++..+..|.-|...+..
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33456777788888888888888888877644
No 53
>KOG1937|consensus
Probab=22.15 E-value=5.1e+02 Score=22.31 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 19 QARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIP-RRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 19 q~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~-rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
+.+-..|.+++.+.-..+.+...-+ -..++..|..++. +||..+..+|....++-+.--+.|..|+.+++.+
T Consensus 306 ~~~~~~ltqqwed~R~pll~kkl~L--r~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 306 NKQMEELTQQWEDTRQPLLQKKLQL--REELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH--HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 4444445555555444444443332 3345566666777 8999999999998888777778889998888766
No 54
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.14 E-value=3.6e+02 Score=20.49 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=11.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Q psy10641 8 CVQMKILLGGYQARAQELLKQYKVL 32 (97)
Q Consensus 8 EKKL~v~lgGYq~Ra~~L~kki~e~ 32 (97)
-+|+.-.+.-.|.+.-...+.++++
T Consensus 4 ~~~~~~~~d~lq~~i~~as~~lNd~ 28 (207)
T PF05546_consen 4 SKKLSFYMDSLQETIFTASQALNDV 28 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444
No 55
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.11 E-value=2.3e+02 Score=18.30 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 56 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 56 Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
-+.+|++.+...+......-..++..+..+....+.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568888888888888888888888888887776654
No 56
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=21.99 E-value=3.7e+02 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy10641 21 RAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKER 74 (97)
Q Consensus 21 Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~R 74 (97)
.-+.|-.+|++.|++|+....+-..| .+|+..++.++.+..++
T Consensus 364 I~kcLe~qIn~qf~tIe~Lk~~n~~~-----------~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 364 INKCLEGQINNQFDTIEDLKEENQDL-----------EKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHh
Confidence 34568888999999999988665544 47788888888777665
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.86 E-value=2.2e+02 Score=17.84 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10641 24 ELLKQYKVLESQIDQCYVD 42 (97)
Q Consensus 24 ~L~kki~e~~~~le~a~~e 42 (97)
.|-.+|..+.+.|.....+
T Consensus 8 ~LE~ki~~aveti~~Lq~e 26 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQME 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666555555533
No 58
>KOG3067|consensus
Probab=21.19 E-value=3.9e+02 Score=20.51 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy10641 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQK 72 (97)
Q Consensus 10 KL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~ 72 (97)
-+-+-+.||-.-...++.+|....+.|+.+..+...--..=-+-..-||.+..-.++++...+
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~k 68 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIK 68 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 344667889999999999999999999999988877655555555679999999999887643
No 59
>KOG4098|consensus
Probab=20.67 E-value=3.1e+02 Score=19.66 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy10641 7 LCVQMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSF 48 (97)
Q Consensus 7 lEKKL~v~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~ 48 (97)
.|--.+-+++-.+.--..+.+-|..+.+++.+..-||+.|+.
T Consensus 73 VErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~ 114 (140)
T KOG4098|consen 73 VERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKK 114 (140)
T ss_pred hhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566777888888889999999999999999999999986
No 60
>smart00338 BRLZ basic region leucin zipper.
Probab=20.36 E-value=2e+02 Score=16.89 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 61 IASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 61 le~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
+..|..+|..+..--..|+.....|..+...|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666666665554
No 61
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.14 E-value=2e+02 Score=16.92 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy10641 25 LLKQYKVLESQIDQ 38 (97)
Q Consensus 25 L~kki~e~~~~le~ 38 (97)
+..++.++-.++++
T Consensus 22 ~~~ei~~l~~~i~~ 35 (80)
T PF04977_consen 22 LNQEIAELQKEIEE 35 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444333333
Done!