Query psy10641
Match_columns 97
No_of_seqs 100 out of 132
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:42:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 69.3 10 0.00034 24.6 5.0 37 57-93 4-40 (106)
2 2zqm_A Prefoldin beta subunit 60.4 28 0.00096 21.7 10.7 82 14-95 14-113 (117)
3 3ghg_A Fibrinogen alpha chain; 54.5 92 0.0032 25.8 10.3 39 56-94 114-152 (562)
4 3oja_B Anopheles plasmodium-re 54.3 75 0.0026 24.7 8.4 27 58-84 515-541 (597)
5 2odv_A Plectin 1, HD1; plakin 52.5 12 0.00042 27.2 3.4 28 16-43 85-112 (235)
6 3s9g_A Protein hexim1; cyclin 50.0 51 0.0017 21.5 7.8 42 51-92 36-77 (104)
7 2yy0_A C-MYC-binding protein; 47.0 38 0.0013 19.2 4.4 27 67-93 20-46 (53)
8 1jnm_A Proto-oncogene C-JUN; B 43.8 45 0.0015 19.1 5.2 35 59-93 22-56 (62)
9 2akf_A Coronin-1A; coiled coil 42.5 33 0.0011 17.8 3.1 25 63-87 3-27 (32)
10 2hh6_A BH3980 protein; 1017660 37.4 49 0.0017 21.8 4.2 40 1-40 2-43 (113)
11 1ic2_A Tropomyosin alpha chain 37.1 67 0.0023 19.2 10.9 60 23-82 9-71 (81)
12 1fxk_C Protein (prefoldin); ar 34.2 91 0.0031 19.9 5.7 38 57-94 93-130 (133)
13 4abx_A DNA repair protein RECN 33.3 1.1E+02 0.0038 20.6 7.5 73 17-93 84-163 (175)
14 2wt7_A Proto-oncogene protein 29.8 83 0.0028 18.0 7.4 34 60-93 24-57 (63)
15 2v66_B Nuclear distribution pr 26.4 1.4E+02 0.0047 19.5 10.6 31 59-89 35-65 (111)
16 2eqb_B RAB guanine nucleotide 25.3 1.4E+02 0.0047 19.1 7.2 32 61-92 28-59 (97)
17 1t2k_D Cyclic-AMP-dependent tr 24.4 1E+02 0.0035 17.4 7.4 34 60-93 23-56 (61)
18 3swy_A Cyclic nucleotide-gated 24.1 1E+02 0.0035 17.1 4.9 28 65-92 4-31 (46)
19 3m91_A Proteasome-associated A 23.0 1.1E+02 0.0038 17.2 6.4 25 16-40 12-36 (51)
20 3vkg_A Dynein heavy chain, cyt 22.6 3.4E+02 0.012 27.2 8.4 39 55-93 2024-2062(3245)
21 3hls_A Guanylate cyclase solub 21.4 1.3E+02 0.0045 17.5 4.9 29 13-41 9-38 (66)
22 1fxk_A Prefoldin; archaeal pro 21.0 1.5E+02 0.005 17.9 10.5 78 15-92 10-105 (107)
23 1a93_A Coiled coil, LZ, MYC pr 20.7 1.1E+02 0.0036 16.1 3.0 24 8-31 9-32 (34)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=69.31 E-value=10 Score=24.65 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 57 IPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 57 i~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
+..|+..|+.|+..+...|+.|...-..+...+..+.
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999998888777766553
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.38 E-value=28 Score=21.67 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH------------------HhhHHHHHHHHHHHHHHHHHHH
Q psy10641 14 LLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQE------------------EASIPRRIASLTEDVNRQKERE 75 (97)
Q Consensus 14 ~lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E------------------~~Ai~rRle~L~eeV~~q~~RE 75 (97)
-+.-++.+...+..++...-.++.....-...+..|.... ...+..|++.+..++.......
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888887777777776664211 2346789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy10641 76 AVLQERFGALDAQLKQLELG 95 (97)
Q Consensus 76 r~lQ~rY~~L~~e~~~l~~~ 95 (97)
..++..+..+...+..+..+
T Consensus 94 ~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 94 KKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999998887654
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.52 E-value=92 Score=25.84 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10641 56 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLEL 94 (97)
Q Consensus 56 Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~~ 94 (97)
-+.+||..|+++|+.|-.+-+.||..-++++.+...|.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999888777653
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.28 E-value=75 Score=24.74 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 58 PRRIASLTEDVNRQKEREAVLQERFGA 84 (97)
Q Consensus 58 ~rRle~L~eeV~~q~~REr~lQ~rY~~ 84 (97)
..|.+.+..++.+..+...+.++.|..
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 334444444444444444333444443
No 5
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=52.53 E-value=12 Score=27.15 Aligned_cols=28 Identities=4% Similarity=-0.063 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 16 GGYQARAQELLKQYKVLESQIDQCYVDL 43 (97)
Q Consensus 16 gGYq~Ra~~L~kki~e~~~~le~a~~el 43 (97)
|.|.--.......|+..|..|+.+.-++
T Consensus 85 ~~~~ppeg~~~~di~~~W~~Le~ae~eR 112 (235)
T 2odv_A 85 GQLKVPPGYHPLDVEKEWGKLHVAILER 112 (235)
T ss_dssp TSSCCCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444444445668999999999988653
No 6
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.05 E-value=51 Score=21.54 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=22.2
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 51 TQEEASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 51 ~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
++|-.-+.+|++.+.+|-.++....+....+-.+|..|.+.|
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL 77 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRL 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 344455566666666666665554444444444444444433
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.99 E-value=38 Score=19.23 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 67 DVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 67 eV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
||..+..--.+||.+|..|..+.+++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556666666666655553
No 8
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.77 E-value=45 Score=19.09 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 59 RRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 59 rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
.++..|..+|..+...-..|......|..|...|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888888888888888887777653
No 9
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.51 E-value=33 Score=17.75 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 63 SLTEDVNRQKEREAVLQERFGALDA 87 (97)
Q Consensus 63 ~L~eeV~~q~~REr~lQ~rY~~L~~ 87 (97)
.|.++|..+..-=.+||++-..|.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777776654
No 10
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=37.38 E-value=49 Score=21.78 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=30.1
Q ss_pred ChhHHhHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 1 MIFVACLCVQMK--ILLGGYQARAQELLKQYKVLESQIDQCY 40 (97)
Q Consensus 1 ~~~a~KlEKKL~--v~lgGYq~Ra~~L~kki~e~~~~le~a~ 40 (97)
|.|-.++.+-+. .-...|++|++.|-+-...+|++++.--
T Consensus 2 m~~~~~i~~~~~~Kke~k~~~aR~k~LP~dY~~ay~~i~~Yl 43 (113)
T 2hh6_A 2 MSFIEKMIGSLNDKREWKAMEARAKALPKEYHHAYKAIQKYM 43 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 455555555544 4556899999999999999999998754
No 11
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.14 E-value=67 Score=19.25 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 23 QELLKQYKVLESQIDQCYVDLSTFSFL---KTQEEASIPRRIASLTEDVNRQKEREAVLQERF 82 (97)
Q Consensus 23 ~~L~kki~e~~~~le~a~~el~~F~~L---~~~E~~Ai~rRle~L~eeV~~q~~REr~lQ~rY 82 (97)
..|......+.+.++++...+.....- ...|-.++.+||..+.+++.....+=..+|...
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444332 245667888999999999988887766666544
No 12
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.23 E-value=91 Score=19.88 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10641 57 IPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLEL 94 (97)
Q Consensus 57 i~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~~ 94 (97)
+.+|++.+...+.....-...+++.+..+....+++..
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999888887753
No 13
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=33.25 E-value=1.1e+02 Score=20.56 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy10641 17 GYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREA-------VLQERFGALDAQL 89 (97)
Q Consensus 17 GYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E~~Ai~rRle~L~eeV~~q~~REr-------~lQ~rY~~L~~e~ 89 (97)
+|-..-..+...+.++.-+++.+..++..+..=-. .=|.|++.+.+.......--| ++=..+..+..++
T Consensus 84 ~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le----~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL 159 (175)
T 4abx_A 84 KYDETVMQLQNELRAALESVQAIAGELRDVAEGSA----ADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEEL 159 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444455666666666666666666655433211 126666666655554433222 2334444555555
Q ss_pred HHhh
Q psy10641 90 KQLE 93 (97)
Q Consensus 90 ~~l~ 93 (97)
+.|.
T Consensus 160 ~~l~ 163 (175)
T 4abx_A 160 AGLE 163 (175)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 14
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.78 E-value=83 Score=18.03 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 60 RIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 60 Rle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
++..|..+|..+...-..|+.....|..+...|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888888888777653
No 15
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.39 E-value=1.4e+02 Score=19.50 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 59 RRIASLTEDVNRQKEREAVLQERFGALDAQL 89 (97)
Q Consensus 59 rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~ 89 (97)
.-+..|+.++.........++..-++|...-
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N 65 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 65 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666665556665555554433
No 16
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.27 E-value=1.4e+02 Score=19.14 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 61 IASLTEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 61 le~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
+..|..++.....+-..+...-..+..|++.|
T Consensus 28 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 28 VKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.40 E-value=1e+02 Score=17.35 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 60 RIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 60 Rle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
+++.|..+|..++..-..|+.....|..|...|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888888888888887776653
No 18
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.06 E-value=1e+02 Score=17.15 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10641 65 TEDVNRQKEREAVLQERFGALDAQLKQL 92 (97)
Q Consensus 65 ~eeV~~q~~REr~lQ~rY~~L~~e~~~l 92 (97)
.+-|.+...-=-.||.+|+.|..|....
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ss 31 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNAT 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455778888887776543
No 19
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.99 E-value=1.1e+02 Score=17.25 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10641 16 GGYQARAQELLKQYKVLESQIDQCY 40 (97)
Q Consensus 16 gGYq~Ra~~L~kki~e~~~~le~a~ 40 (97)
...+.....|.++-..+.+.+..|.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR 36 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEAR 36 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666566666666665
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.61 E-value=3.4e+02 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10641 55 ASIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93 (97)
Q Consensus 55 ~Ai~rRle~L~eeV~~q~~REr~lQ~rY~~L~~e~~~l~ 93 (97)
.+....+...++++..+.++=..||..|.....|.+.|+
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888888888888889999999888887664
No 21
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=21.41 E-value=1.3e+02 Score=17.51 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy10641 13 ILLGGYQARAQE-LLKQYKVLESQIDQCYV 41 (97)
Q Consensus 13 v~lgGYq~Ra~~-L~kki~e~~~~le~a~~ 41 (97)
+++.|.|..+.. |..++....++++....
T Consensus 9 lvl~~~q~~ae~~L~~~lE~~~~~Lee~t~ 38 (66)
T 3hls_A 9 LVLLGEQFREEYKLTQELEMLTDRLQLTLR 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666654 77777666666664443
No 22
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.99 E-value=1.5e+02 Score=17.89 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH------------------HhhHHHHHHHHHHHHHHHHHHHH
Q psy10641 15 LGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQE------------------EASIPRRIASLTEDVNRQKEREA 76 (97)
Q Consensus 15 lgGYq~Ra~~L~kki~e~~~~le~a~~el~~F~~L~~~E------------------~~Ai~rRle~L~eeV~~q~~REr 76 (97)
+.-++.+...+..++...-.++.....-+..+..|-... ...+..|++.+..++........
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888777777777666666653211 23567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10641 77 VLQERFGALDAQLKQL 92 (97)
Q Consensus 77 ~lQ~rY~~L~~e~~~l 92 (97)
.++.....+...+..+
T Consensus 90 ~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 90 RVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888776543
No 23
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=20.68 E-value=1.1e+02 Score=16.11 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=19.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH
Q psy10641 8 CVQMKILLGGYQARAQELLKQYKV 31 (97)
Q Consensus 8 EKKL~v~lgGYq~Ra~~L~kki~e 31 (97)
|.||...--+-+.|...|.++|..
T Consensus 9 E~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 9 EQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777778888888888888764
Done!