RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10641
(97 letters)
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 32.9 bits (74), Expect = 0.009
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 24 ELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERFG 83
E+L+ + D Y +S + RI L V + + +LQ+
Sbjct: 92 EILRGDFSSANNRDNTYNRVSE----------DLRSRIEVLKRKVIEKVQHIQLLQKNVR 141
Query: 84 ALDAQLKQLE 93
A +K+LE
Sbjct: 142 AQLVDMKRLE 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.013
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 29 YKVLESQIDQ-CYVDLSTFSFLKTQEEASIP-RRIASLTEDVNRQKEREAVLQE--RFGA 84
VLE + + LS F A IP ++ + DV + + V+ + ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKS-DVMVVVNKLHKYSL 416
Query: 85 LDAQLKQ 91
++ Q K+
Sbjct: 417 VEKQPKE 423
Score = 31.7 bits (71), Expect = 0.023
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 17 GYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNR 70
+ +L+ + L QID + S S ++I RI S+ ++ R
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-------SNIKLRIHSIQAELRR 236
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 31.8 bits (72), Expect = 0.020
Identities = 9/84 (10%), Positives = 28/84 (33%)
Query: 10 QMKILLGGYQARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVN 69
++ +L + + E+ + K ++ + T + + I +
Sbjct: 42 SLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASIL 101
Query: 70 RQKEREAVLQERFGALDAQLKQLE 93
LQE + + + ++ L+
Sbjct: 102 THDSSIRYLQEIYNSNNQKIVNLK 125
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.0 bits (69), Expect = 0.036
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 23 QELLKQYKVLESQIDQCYVDLSTFSFLK-------------TQEEASIPRRIASLTEDVN 69
++ L Y+ + + ++ Q + RI L V
Sbjct: 73 RDSLFNYQKNSKDSNTLTKN--IVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130
Query: 70 RQKEREAVLQERFGALDAQLKQLEL 94
Q +R +LQ+ +K+LE+
Sbjct: 131 EQVQRINLLQKNVRDQLVDMKRLEV 155
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 26.1 bits (56), Expect = 2.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 59 RRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 93
RRI +L + V Q R LQ ++K+LE
Sbjct: 118 RRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 3.2
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 20/48 (41%)
Query: 27 KQ-YKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKE 73
KQ K L++ LK + S P +L + E
Sbjct: 19 KQALKKLQAS-------------LKLYADDSAP----ALA--IKATME 47
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding,
nucleotide-binding, RNA-bindin transferase,
nucleotidyltransferase, ATP binding, A-phospho; 3.00A
{Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Length = 415
Score = 25.4 bits (56), Expect = 4.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 11 MKILLGGYQARAQELLKQYKVLE 33
+K+L GY +LL +Y + +
Sbjct: 224 LKLLQAGYGYETYKLLCEYHLFQ 246
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation,
transferase; HET: ATP; 3.00A {Geobacillus
stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB:
1miv_A* 1miy_A*
Length = 404
Score = 25.0 bits (55), Expect = 4.2
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 11 MKILLGGYQARAQELLKQYKVLE--SQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDV 68
K+L G + ARA LL + + + L + + A+ R A L +
Sbjct: 200 EKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQLRLAAAYRWPWLAAREERWALLCHAL 259
Query: 69 NRQKERE 75
Q+ R
Sbjct: 260 GVQESRP 266
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 24.9 bits (54), Expect = 5.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 59 RRIASLTEDVNRQKEREAVLQERFGALDAQL 89
R +A +D K E V+ E A+ L
Sbjct: 296 RDMAKCFDDPELTKRTEEVIAEEIAAIQDDL 326
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.3 bits (52), Expect = 8.2
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 28/63 (44%)
Query: 19 QARAQELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVL 78
+A+ ++L + + Q++ K + NR + +A
Sbjct: 115 KAK-KDLEEWNQRQSEQVE------------KNKIN--------------NRIAD-KAFY 146
Query: 79 QER 81
Q+
Sbjct: 147 QQP 149
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI
transcription regulator, PSI-2; 1.85A {Listeria
monocytogenes str}
Length = 142
Score = 23.8 bits (52), Expect = 8.7
Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 59 RRIASLTEDVNRQ-KEREAVLQERFGALDAQLKQLE 93
+L + + R +L+++ L ++ ++
Sbjct: 66 IDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQ 101
>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint,
cell cycle, cell division, mitosis, nucleus,
phosphorylation; 2.30A {Homo sapiens}
Length = 240
Score = 24.3 bits (52), Expect = 8.7
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 23 QELLKQYKVLESQIDQCYVDLSTFSFLKTQEEASIPRRIASLTEDVNRQKEREAVLQERF 82
ELLK Q+ Y L F + + + ++ T +V+ +K Q+
Sbjct: 40 CELLKHIMYQRQQLPLPYEQLKHFYRKPSPQAEEMLKKKPRATTEVSSRK-----CQQAL 94
Query: 83 GALDAQLKQLE 93
L++ L LE
Sbjct: 95 AELESVLSHLE 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.366
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,366,042
Number of extensions: 66495
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 39
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)