RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10641
         (97 letters)



>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
          {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 23.4 bits (50), Expect = 5.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 19 QARAQELLKQYKVLESQIDQ 38
            RAQ L K+   LE+ +D 
Sbjct: 47 PERAQALGKERSSLEAVVDT 66


>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68
          [TaxId: 33708]}
          Length = 106

 Score = 23.1 bits (49), Expect = 6.5
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 1  MIFVACLCVQMKILLGGYQARAQELLKQYKVLESQIDQC--YVDLSTFSF 48
          +I +AC+ + M      Y+ R   + K   + + ++ QC   VD++  SF
Sbjct: 48 LITLACMHLTMNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSF 97


>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
          protein 28, VPS28 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 22.8 bits (49), Expect = 7.6
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 18 YQARAQELLKQYKVLESQIDQ-----CYVDLSTF 46
          Y     +LLKQ+KV  +  ++      +  +  F
Sbjct: 53 YTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAF 86


>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
           ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 223

 Score = 22.9 bits (49), Expect = 8.7
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 15  LGGYQARAQELLKQYKVLESQIDQCY-VDLSTFSFLKTQEEASIP 58
           L    A++QE    +  L   I  C  V +  FSF   QEE  IP
Sbjct: 147 LSKKVAQSQEFFSDHGTL-FIIKTCLGVYIKEFSFRPDQEEVLIP 190


>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 274

 Score = 23.0 bits (49), Expect = 9.1
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 65  TEDVNRQKEREAVLQERFG 83
             +V        +LQ++FG
Sbjct: 234 QVNVPDVPSLYQLLQQQFG 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.366 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 318,115
Number of extensions: 11903
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 13
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)