Query psy10643
Match_columns 769
No_of_seqs 429 out of 2269
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:46:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0050|consensus 100.0 4E-120 9E-125 983.6 33.7 584 2-746 1-617 (617)
2 PF11831 Myb_Cef: pre-mRNA spl 100.0 3.7E-54 8.1E-59 444.6 21.7 227 392-647 1-231 (231)
3 PLN03091 hypothetical protein; 99.9 1.1E-27 2.4E-32 261.4 13.4 151 7-157 12-164 (459)
4 PLN03212 Transcription repress 99.9 6.2E-27 1.4E-31 240.5 11.3 124 7-132 23-148 (249)
5 COG5147 REB1 Myb superfamily p 99.9 6.3E-25 1.4E-29 246.5 11.1 357 7-386 18-397 (512)
6 KOG0048|consensus 99.9 3.6E-24 7.9E-29 222.7 8.9 107 7-113 7-115 (238)
7 KOG0048|consensus 99.9 3E-23 6.4E-28 215.9 9.7 104 57-191 5-112 (238)
8 PLN03212 Transcription repress 99.9 1.9E-22 4.2E-27 207.5 9.6 120 39-198 10-133 (249)
9 PLN03091 hypothetical protein; 99.8 6.7E-21 1.5E-25 208.5 11.3 113 55-200 8-124 (459)
10 KOG0049|consensus 99.8 1.1E-18 2.3E-23 195.7 12.0 146 7-183 303-455 (939)
11 KOG0049|consensus 99.6 2.5E-16 5.4E-21 176.9 7.2 151 7-189 251-409 (939)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.5 1.1E-14 2.5E-19 120.1 6.5 60 12-72 1-60 (60)
13 PF00249 Myb_DNA-binding: Myb- 99.2 8.5E-12 1.8E-16 99.1 4.2 47 9-55 1-48 (48)
14 PF13921 Myb_DNA-bind_6: Myb-l 99.2 9.9E-12 2.1E-16 102.6 3.7 51 64-114 1-52 (60)
15 KOG0051|consensus 99.2 4.8E-11 1E-15 136.5 7.9 105 8-114 383-517 (607)
16 PF00249 Myb_DNA-binding: Myb- 99.1 8.7E-11 1.9E-15 93.4 3.2 45 61-105 1-48 (48)
17 KOG0051|consensus 99.0 1.1E-09 2.4E-14 125.6 7.8 150 7-189 306-510 (607)
18 KOG0050|consensus 98.9 5.1E-09 1.1E-13 116.9 10.5 140 59-232 5-146 (617)
19 smart00717 SANT SANT SWI3, AD 98.9 2.4E-09 5.3E-14 82.6 4.9 48 9-56 1-48 (49)
20 smart00717 SANT SANT SWI3, AD 98.7 8E-09 1.7E-13 79.7 3.7 46 61-106 1-48 (49)
21 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 2E-08 4.4E-13 76.4 4.5 45 11-55 1-45 (45)
22 COG5147 REB1 Myb superfamily p 98.7 1.4E-08 2.9E-13 115.8 4.6 101 58-189 17-120 (512)
23 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 4.9E-08 1.1E-12 74.3 3.7 43 63-105 1-45 (45)
24 KOG0457|consensus 97.7 0.00012 2.7E-09 81.6 8.8 48 9-56 72-119 (438)
25 TIGR01557 myb_SHAQKYF myb-like 97.1 0.00064 1.4E-08 56.7 4.5 47 9-55 3-54 (57)
26 KOG0457|consensus 96.6 0.0043 9.3E-08 69.7 6.8 48 59-106 70-119 (438)
27 PF13325 MCRS_N: N-terminal re 96.3 0.013 2.9E-07 60.4 8.0 97 11-109 1-130 (199)
28 COG5259 RSC8 RSC chromatin rem 96.3 0.0037 8E-08 70.5 4.2 45 8-53 278-322 (531)
29 TIGR01557 myb_SHAQKYF myb-like 96.0 0.01 2.2E-07 49.6 4.6 46 61-106 3-55 (57)
30 KOG1279|consensus 96.0 0.0056 1.2E-07 70.8 4.1 44 9-53 253-296 (506)
31 TIGR02894 DNA_bind_RsfA transc 95.4 0.011 2.4E-07 58.7 3.0 50 7-57 2-57 (161)
32 TIGR02894 DNA_bind_RsfA transc 95.4 0.0068 1.5E-07 60.3 1.4 53 60-112 3-62 (161)
33 PF13837 Myb_DNA-bind_4: Myb/S 95.0 0.026 5.6E-07 49.8 3.7 45 10-54 2-63 (90)
34 COG5114 Histone acetyltransfer 94.2 0.033 7.2E-07 60.4 3.0 47 10-56 64-110 (432)
35 PF13873 Myb_DNA-bind_5: Myb/S 94.2 0.045 9.7E-07 47.5 3.3 48 8-55 1-69 (78)
36 PF13837 Myb_DNA-bind_4: Myb/S 94.1 0.015 3.3E-07 51.2 0.3 49 62-110 2-69 (90)
37 COG5259 RSC8 RSC chromatin rem 94.0 0.061 1.3E-06 61.1 4.7 55 60-114 278-335 (531)
38 KOG1279|consensus 93.8 0.077 1.7E-06 61.7 5.2 70 61-138 253-325 (506)
39 PRK13923 putative spore coat p 93.4 0.048 1E-06 55.0 2.2 49 7-56 3-57 (170)
40 PF08914 Myb_DNA-bind_2: Rap1 92.4 0.086 1.9E-06 45.3 2.2 48 61-108 2-60 (65)
41 PLN03142 Probable chromatin-re 91.9 0.79 1.7E-05 57.9 10.6 99 11-109 826-988 (1033)
42 PF08914 Myb_DNA-bind_2: Rap1 91.8 0.13 2.7E-06 44.3 2.5 50 10-59 3-61 (65)
43 PRK13923 putative spore coat p 91.5 0.079 1.7E-06 53.5 1.1 51 59-109 3-60 (170)
44 COG5114 Histone acetyltransfer 88.8 0.26 5.6E-06 53.9 2.3 46 62-107 64-111 (432)
45 PF13873 Myb_DNA-bind_5: Myb/S 88.6 0.3 6.5E-06 42.3 2.2 50 61-110 2-74 (78)
46 COG5118 BDP1 Transcription ini 83.0 1.2 2.6E-05 49.8 3.8 42 11-53 367-408 (507)
47 KOG4282|consensus 82.9 0.86 1.9E-05 50.4 2.8 50 61-110 54-118 (345)
48 PF09111 SLIDE: SLIDE; InterP 78.7 3.2 6.9E-05 39.8 4.6 45 7-51 47-106 (118)
49 KOG4282|consensus 72.5 3.9 8.5E-05 45.3 4.1 46 10-55 55-113 (345)
50 KOG4167|consensus 71.0 4.2 9.1E-05 49.1 4.0 50 4-54 614-663 (907)
51 PF11626 Rap1_C: TRF2-interact 69.2 5.6 0.00012 35.8 3.6 26 9-37 47-80 (87)
52 COG5118 BDP1 Transcription ini 67.4 4.3 9.3E-05 45.6 2.9 43 62-104 366-409 (507)
53 PF13325 MCRS_N: N-terminal re 66.8 13 0.00028 38.8 6.1 122 63-197 1-136 (199)
54 PF12776 Myb_DNA-bind_3: Myb/S 61.9 11 0.00024 33.4 4.1 44 11-54 1-61 (96)
55 KOG2656|consensus 57.6 10 0.00022 43.0 3.6 83 30-112 74-188 (445)
56 PF09111 SLIDE: SLIDE; InterP 54.2 7.5 0.00016 37.3 1.7 50 58-107 46-112 (118)
57 TIGR02338 gimC_beta prefoldin, 50.6 77 0.0017 29.6 7.8 39 727-765 70-108 (110)
58 PF13404 HTH_AsnC-type: AsnC-t 48.9 10 0.00022 29.8 1.4 38 67-104 3-41 (42)
59 smart00595 MADF subfamily of S 48.1 13 0.00028 32.7 2.1 23 31-54 29-51 (89)
60 PF13404 HTH_AsnC-type: AsnC-t 47.8 28 0.00061 27.3 3.7 38 15-53 3-40 (42)
61 PF05700 BCAS2: Breast carcino 45.5 1.6E+02 0.0034 31.0 10.0 141 612-756 21-175 (221)
62 KOG1194|consensus 44.5 22 0.00048 41.1 3.7 46 9-55 187-232 (534)
63 KOG1878|consensus 41.0 9 0.0002 49.5 0.0 44 8-52 224-267 (1672)
64 PF12776 Myb_DNA-bind_3: Myb/S 39.8 26 0.00056 31.1 2.7 44 63-106 1-63 (96)
65 PF07106 TBPIP: Tat binding pr 39.3 98 0.0021 30.9 7.1 96 654-756 56-163 (169)
66 KOG4329|consensus 38.7 28 0.00061 39.4 3.3 45 11-56 279-324 (445)
67 COG1579 Zn-ribbon protein, pos 38.6 1.9E+02 0.0042 31.1 9.4 84 673-763 51-135 (239)
68 PRK11179 DNA-binding transcrip 36.3 24 0.00053 34.6 2.2 46 67-112 9-55 (153)
69 PRK09343 prefoldin subunit bet 35.8 2.7E+02 0.0058 26.7 9.1 93 675-767 8-114 (121)
70 TIGR02231 conserved hypothetic 35.6 1.6E+02 0.0036 34.6 9.2 92 672-766 69-173 (525)
71 PF13851 GAS: Growth-arrest sp 34.3 1.8E+02 0.004 30.2 8.3 86 672-765 32-127 (201)
72 COG1382 GimC Prefoldin, chaper 33.6 1E+02 0.0023 29.8 5.9 37 730-766 76-112 (119)
73 KOG2656|consensus 32.3 17 0.00037 41.3 0.4 48 7-55 128-181 (445)
74 PRK11169 leucine-responsive tr 31.8 26 0.00056 34.8 1.6 47 66-112 13-60 (164)
75 PRK11179 DNA-binding transcrip 31.7 45 0.00097 32.7 3.2 45 14-59 8-52 (153)
76 PLN03142 Probable chromatin-re 30.6 59 0.0013 41.7 4.7 33 7-39 924-956 (1033)
77 PF08281 Sigma70_r4_2: Sigma-7 30.1 46 0.001 26.5 2.5 41 66-106 12-52 (54)
78 KOG4468|consensus 29.8 39 0.00085 40.4 2.8 48 7-55 86-143 (782)
79 COG4026 Uncharacterized protei 29.1 3.6E+02 0.0079 29.0 9.3 40 728-767 167-206 (290)
80 cd00632 Prefoldin_beta Prefold 28.5 3.3E+02 0.0072 25.1 8.2 38 728-765 67-104 (105)
81 PF12325 TMF_TATA_bd: TATA ele 28.2 3.1E+02 0.0067 26.6 8.1 39 728-766 65-103 (120)
82 PF01920 Prefoldin_2: Prefoldi 27.7 3.6E+02 0.0079 24.1 8.2 39 727-765 65-103 (106)
83 PF12718 Tropomyosin_1: Tropom 27.6 4.9E+02 0.011 25.7 9.6 65 674-757 42-106 (143)
84 KOG1999|consensus 27.5 1.2E+02 0.0027 38.4 6.4 32 371-402 772-815 (1024)
85 PRK11169 leucine-responsive tr 26.3 54 0.0012 32.6 2.8 45 14-59 13-57 (164)
86 PF09726 Macoilin: Transmembra 24.5 6.3E+02 0.014 31.4 11.7 16 622-637 422-437 (697)
87 PF01388 ARID: ARID/BRIGHT DNA 24.4 82 0.0018 28.0 3.3 38 18-55 39-88 (92)
88 PF11831 Myb_Cef: pre-mRNA spl 24.2 78 0.0017 33.7 3.6 20 555-574 198-217 (231)
89 KOG4167|consensus 24.1 60 0.0013 39.8 3.0 42 62-103 620-662 (907)
90 PF10545 MADF_DNA_bdg: Alcohol 24.1 34 0.00074 29.1 0.8 24 31-54 28-52 (85)
91 cd00890 Prefoldin Prefoldin is 23.8 2.8E+02 0.006 25.8 7.0 37 728-764 91-127 (129)
92 KOG0933|consensus 23.5 1E+03 0.022 31.1 13.0 89 670-766 395-500 (1174)
93 PF09905 DUF2132: Uncharacteri 23.2 49 0.0011 28.7 1.5 44 17-72 12-62 (64)
94 PRK09039 hypothetical protein; 22.6 5.4E+02 0.012 29.0 10.0 43 723-765 143-185 (343)
95 KOG0018|consensus 22.4 9.4E+02 0.02 31.4 12.5 136 614-764 334-477 (1141)
96 KOG2009|consensus 20.6 1.2E+02 0.0026 36.5 4.5 44 60-103 408-452 (584)
No 1
>KOG0050|consensus
Probab=100.00 E-value=4e-120 Score=983.64 Aligned_cols=584 Identities=50% Similarity=0.707 Sum_probs=530.6
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCC
Q psy10643 2 SKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPT 81 (769)
Q Consensus 2 ~ri~~vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~ 81 (769)
+||+ +|+|+|++.||++|+.+|++||.+.|.+|+++++.++++||+.||+.||||.++++.||.+||++||++++.++.
T Consensus 1 ~~i~-~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~ 79 (617)
T KOG0050|consen 1 MRIE-IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPT 79 (617)
T ss_pred CceE-EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCC
Confidence 5788 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Q psy10643 82 QWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLA 161 (769)
Q Consensus 82 ~W~~IA~l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arlg 161 (769)
+|..|+.++|||+.||.+||+++|+..+.....+..-+|++ |+||+++|+|+++|++||++||++||.+||++|+++|+
T Consensus 80 qwrtIa~i~gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~r-Lk~gE~ePn~e~~~aRpd~~dmdEde~eMl~eaRarla 158 (617)
T KOG0050|consen 80 QWRTIADIMGRTSQQCLERYNNLLDVYVSYHYHSEPYIDAK-LKEGEIEPNQETNPARPDGFDMDEDEGEMLSEARARLA 158 (617)
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHHHHhhhcccccccccc-cCCCcCCCccccccccCCcccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998887766778888 99999999999999999999999999999999999999
Q ss_pred hhhhHhhcCchhhhhHHHHHHHHHHHhHHHHHHcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcHHHH--------
Q psy10643 162 NTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEER-------- 233 (769)
Q Consensus 162 N~w~kiAkrk~R~~~~~k~r~~a~Lqkrrelk~agi~~~~~~~k~~~~dy~~~ip~e~~p~~g~~~~~~e~~-------- 233 (769)
|++|++|+||.|+++++..|+.+.|||||||++|||.+..+|+++++||||++|||++.|++|||||+.|..
T Consensus 159 Nt~gkka~Rk~reK~l~e~~r~~~lqkrrelraagi~~~~rkr~~~~Idyn~~ipfek~p~~gfydts~e~~~i~~~~f~ 238 (617)
T KOG0050|consen 159 NTQGKKAKRKLREKQLEEPRRGAPLQKRRELRAAGILRTTRKRLSHLIDYNISIPFEKPPWNGFYDTSLEGYVILHNHFC 238 (617)
T ss_pred cccchHHHHHHHHHHHhhccCCccchhHHHHHhhhhhHHhHhhhhccCCcccccccccCCcccccccchhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999888899999999999999999999999999982
Q ss_pred -HHhhhhccCcccHHHHHHhhHHHHHHHHhhcCCchHHHhhcccccccccccCCCCCCCChHHHHHHHHhhhhhHHHHHH
Q psy10643 234 -LRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREV 312 (769)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~kr~kl~lp~pq~~~~el~~ivk~g~~~~~a~~~ 312 (769)
.+++.++|.+..+.|...++.|+++.++.++.+.++++.+... +.||+||+||+||||+.||+.+||+|.|++.++.+
T Consensus 239 ~~~~~~~eg~r~~d~E~~~r~~dk~~~~r~ke~~e~sa~~~~~~-~~Kr~klilpap~Is~~el~~~vK~g~A~~~~R~~ 317 (617)
T KOG0050|consen 239 SVDIKVSEGLRVIDDEGSARTSDKEGVSREREHEEISAFIPDLG-SYKRDKLILPAPDISWRELRLFVKFGSALLRSRFI 317 (617)
T ss_pred HHHHHHhhhhhccccchhhhccccccchhhhhcchhhhhhhhcc-hhccccccCCCCcccHHHHHHHHhcccHHHHHHHH
Confidence 3568899999999999999999999999999999999998876 69999999999999999999999999999999998
Q ss_pred HhhcCCCCcchhhhccCCCCC-CCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10643 313 AIESGSGPTSDALLTDYSIGT-GAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLA 391 (769)
Q Consensus 313 ~~~~~~~~~t~~l~~~y~~~~-~~~~~t~r~p~~~~d~i~~ea~n~~~~~~~~tpl~gg~n~~l~~~~~~g~~p~~~~~~ 391 (769)
+ .++ .....||+||+.++ +++.||||||+..+|+|+.||+|++++++++|||+||.|+|||+++|+
T Consensus 318 ~-~T~--~~~~~ll~dy~~r~~av~~rt~~~~~lk~d~~~ieaqn~~~~~~tk~~l~G~~~~~lh~S~~~---------- 384 (617)
T KOG0050|consen 318 Q-ITK--VYGIRLLKDYIFRNLAVDCRTKVKDRLKDDVNKIEAQNSTRRRSTKELLEGDYGSKLHRSCRG---------- 384 (617)
T ss_pred H-hcc--chhhhHHHhhhhhccccccccccCccccchHHHHHHHHHHhhcCccccccCCCCCCcCcccCC----------
Confidence 8 433 23478999998764 479999999998899999999999999999999999999999988773
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCccccccCCChHHHHHHHHHHHHHhc
Q psy10643 392 TPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRAGL 471 (769)
Q Consensus 392 tpn~~~~tp~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp~rd~~~in~~~~~~~~~~~~p~~~~~~~~~~l~~~l 471 (769)
| |+ +||++.++.. +. ..||.+|
T Consensus 385 -p--------------------------------------------d~-~iN~e~~~~~---------~~---~~Lr~~l 406 (617)
T KOG0050|consen 385 -P--------------------------------------------DE-RINEESGMAL---------KS---RSLRQGL 406 (617)
T ss_pred -C--------------------------------------------cc-cCChhhhhhh---------HH---HHHHHHH
Confidence 1 34 6787766531 11 2499999
Q ss_pred cCCCCCCCcceeecCCcchhhhhccCCcccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhCCCCccccccccCCCCC
Q psy10643 472 SSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSD 551 (769)
Q Consensus 472 ~~LP~p~n~~ei~~p~~~~~e~~~~~~~~~~eD~~d~~~r~~~~~~~~e~~~~~rrSqvvQR~LPRP~~v~~ll~~~~~~ 551 (769)
++||+||||||||+++++.+ +| ++.+++.+.+++|||||||+||||+.||.++++.
T Consensus 407 a~LP~PKNDfEiv~~~dE~E-----------~~----------e~~Ae~~~~~~~RsqviqrdlprP~~~n~~~R~s--- 462 (617)
T KOG0050|consen 407 ASLPSPKNDFEIVLSEDEKE-----------ED----------ERIAEEKEFMKRRSQVIQRDLPRPPSVNDAPRVS--- 462 (617)
T ss_pred hcCCCCCCcceeecCcccch-----------hh----------HHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhH---
Confidence 99999999999999443321 11 3334477788999999999999999988554421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhhcCCCcccchhhccccccchhhhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy10643 552 PPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVK 631 (769)
Q Consensus 552 ~~~~dl~~Ae~lI~~Em~~LL~~Da~k~P~pg~~~~~~~~~~~~~~~~~~~l~~~~~e~fsde~L~~Ar~lI~~E~~~vk 631 (769)
+ |+.||+||+++|| +|++||.++|+.|..+|.+|+.
T Consensus 463 -----------l----mi~ll~~d~~~~P--------------------------~~~d~s~eel~~a~~llk~e~~--- 498 (617)
T KOG0050|consen 463 -----------L----MIVLLAYDTLNYP--------------------------PFKDFSQEELDNAYDLLKQEAE--- 498 (617)
T ss_pred -----------H----HHHHHHhcccCCC--------------------------CCCCCCHHHHHHHHHHHHHHHH---
Confidence 1 9999999999998 5899999999999999999988
Q ss_pred hcCCCCCCChhHHHHHHHHHhhhhhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCc
Q psy10643 632 TGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSP 711 (769)
Q Consensus 632 ~~~~~~~~~~e~~~~vw~~~~~~~~ylp~~~~Y~~~s~as~~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllG 711 (769)
++..++| ++|.+|.++++|| ++.|++.++++.+|+ + +.+|+. |++.|++|+||||||. +++|
T Consensus 499 ------~l~~dd~-q~~~ec~s~~~~l--~~~~~~~~~~~~~d~--a-e~~le~----m~~~ak~~~klekKlk--~~~~ 560 (617)
T KOG0050|consen 499 ------ELVSDDY-QFLKECLSRMQYL--GSTYTRIQVATAEDP--A-EKELEN----MAKKAKRAEKLEKKLK--HLLG 560 (617)
T ss_pred ------hcChHHH-HHHHHHHHHHHHH--HhhhhhhhhhccCCc--H-HHHHHH----HHHHHHHHHHHHHHHH--HHhh
Confidence 3456889 9999999999999 999999999999999 4 888887 9999999999999999 9999
Q ss_pred CcccccCc-------------------cch----hhhhcchHHHHHHHHHHHHHHHHH
Q psy10643 712 GRESTPRP-------------------ITY----KADTSSIPRRIASLTEDVNRQKER 746 (769)
Q Consensus 712 GYQ~Ra~~-------------------~tF----~~E~~AiprRle~L~eeV~~q~~R 746 (769)
|||+| .+ .|| .+|..|+|+|+++|+++|.+|+.+
T Consensus 561 gyq~r-~~l~kq~~~~~~~le~~~~e~~~f~~l~~qE~~Al~~R~~~lq~ev~~q~~~ 617 (617)
T KOG0050|consen 561 GYQQR-EMLIKQIHHTLKALEEGQRELYTFEFLYRQEIRALPGRLERLQEEVNKQQEI 617 (617)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 99999 55 677 999999999999999999998753
No 2
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=100.00 E-value=3.7e-54 Score=444.61 Aligned_cols=227 Identities=52% Similarity=0.794 Sum_probs=196.1
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCccccccCCChHHHHHHH---HHHHH
Q psy10643 392 TPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQ---TEQLR 468 (769)
Q Consensus 392 tpn~~~~tp~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp~rd~~~in~~~~~~~~~~~~p~~~~~~~---~~~l~ 468 (769)
|||||+ ||||++ +++|+||++.. ++|+||.+||+||+|+||+++.+. .+++||+..|.++ +.+||
T Consensus 1 TPN~~~-t~~r~~----~~~g~TP~~~~------~~g~tp~~TP~RD~l~IN~~~~~~-~~~~tp~~~k~~~~~~k~~Lr 68 (231)
T PF11831_consen 1 TPNPLA-TPFRTP----SGVGATPRRNG------GPGQTPLRTPLRDKLNINPEDGMS-SVGDTPRDEKARQKAAKSQLR 68 (231)
T ss_pred CCCCcc-CcccCC----CCCCcCCCCCC------CCCCCCCCCCCCccccCCcccccc-ccccChHHHHHHHHHHHHHHH
Confidence 899996 889997 25677775432 346899999999999999877632 6899999998665 49999
Q ss_pred HhccCCCCCCCcceeecCCcchhhhhccCCcccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhCCCCccccc-cccC
Q psy10643 469 AGLSSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINI-VLRP 547 (769)
Q Consensus 469 ~~l~~LP~p~n~~ei~~p~~~~~e~~~~~~~~~~eD~~d~~~r~~~~~~~~e~~~~~rrSqvvQR~LPRP~~v~~-ll~~ 547 (769)
++|++||+|+|||||+||++++++ ..+.+..+++||+|+|+|++++++++++++|+||||||||+||||+.||. +|++
T Consensus 69 ~~LasLP~P~Nd~EI~lPe~e~~e-~~~~~~~~eeDaad~d~r~~~~~~~~e~~e~~rRSqvvQR~LPRP~~v~~~~L~~ 147 (231)
T PF11831_consen 69 AGLASLPKPKNDYEIVLPEEEEEE-DEEAEEEMEEDAADRDARERAEREEEEEKELKRRSQVVQRGLPRPSEVNESILRP 147 (231)
T ss_pred HHHhcCCCCCCeeeeecCCccccc-ccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCcccHHHHHh
Confidence 999999999999999999987544 33344467999999999999999999999999999999999999999998 6664
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCCcccchhhccccccchhhhhhcccCCCCCCCCHHHHHHHHHHHHHHH
Q psy10643 548 SNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREM 627 (769)
Q Consensus 548 ~~~~~~~~dl~~Ae~lI~~Em~~LL~~Da~k~P~pg~~~~~~~~~~~~~~~~~~~l~~~~~e~fsde~L~~Ar~lI~~E~ 627 (769)
. .....++++.|++||++||+.||+||+++||++|++..+. .++|++|++++|+.|+++|..||
T Consensus 148 ~-~~~~~~~~~~ae~lI~~Em~~Ll~~D~~~~P~~~~~~~~~---------------~~~~e~~~~e~l~~A~~li~~E~ 211 (231)
T PF11831_consen 148 A-ENPALTELDEAEELIKQEMATLLKHDAIKYPVPGGKPKGK---------------APPYEDFSDEDLAEARELIQAEM 211 (231)
T ss_pred h-cccCCcchHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCC---------------CCCcCCCCHHHHHHHHHHHHHHH
Confidence 4 3344678889999999999999999999999999763333 37899999999999999999999
Q ss_pred HHHHhcCCCCCCChhHHHHH
Q psy10643 628 DLVKTGMGHGDLSLESFTQV 647 (769)
Q Consensus 628 ~~vk~~~~~~~~~~e~~~~v 647 (769)
+.|+.+|+|+++++++|.+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~ 231 (231)
T PF11831_consen 212 EVVKGGMGHGDLSLEAYTQV 231 (231)
T ss_pred HHhccccccccccHhhhhcC
Confidence 99999999999999999875
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=261.37 Aligned_cols=151 Identities=23% Similarity=0.444 Sum_probs=132.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhh-hcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCCCccc
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRT 85 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp-~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~~W~~ 85 (769)
+|+|+||+|||++|+.+|.+||.++|..||..++ +|+++||++||.++|+|.+++++||.|||.+|+++++.||++|..
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWsk 91 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHH
Confidence 7899999999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy10643 86 IAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEAR 157 (769)
Q Consensus 86 IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~ 157 (769)
||. |+|||+.+|++||+.+|++.+...........+........+..|.+.++.++..++.++|..||..+.
T Consensus 92 IAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d~~p~~~~~~~~~s~~~~~el~~~~~~~ 164 (459)
T PLN03091 92 IAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADN 164 (459)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccccCCccccccccchhhhhhhhhhhhhhc
Confidence 999 999999999999999999887765443222333333334445668888888999999999999987754
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.94 E-value=6.2e-27 Score=240.46 Aligned_cols=124 Identities=26% Similarity=0.478 Sum_probs=110.2
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhh-hcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCCCccc
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRT 85 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp-~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~~W~~ 85 (769)
+|+|+||+|||++|+.+|.+||.++|..||+.++ +|+++||++||.++|+|.+++++||.|||++|++++..||++|..
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~ 102 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSL 102 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHH
Confidence 8899999999999999999999989999999985 999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCC
Q psy10643 86 IAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPN 132 (769)
Q Consensus 86 IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~ 132 (769)
||. |+|||..+|++||+.+|++.+.+.... ......+.++.+++.
T Consensus 103 IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~--p~~~kp~~~~~~~~~ 148 (249)
T PLN03212 103 IAGRIPGRTDNEIKNYWNTHLRKKLLRQGID--PQTHKPLDANNIHKP 148 (249)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhHHHHhcCCC--CCCCCCCCccccCCc
Confidence 999 999999999999999999987766542 222344445555443
No 5
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.91 E-value=6.3e-25 Score=246.53 Aligned_cols=357 Identities=29% Similarity=0.267 Sum_probs=266.5
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCCCcccc
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTI 86 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~~W~~I 86 (769)
+++|.|+..||+.|+.+|++||+++|..||+.|..+++.||+.||+++++|.+++..|+.+||..|+++...+|..|..|
T Consensus 18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wsti 97 (512)
T COG5147 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTI 97 (512)
T ss_pred ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhhh
Q psy10643 87 AP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQG 165 (769)
Q Consensus 87 A~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arlgN~w~ 165 (769)
+. ++|||+.+|.+||.+.+..... ..|+ ...+...-+.++|.-++-+..|+-.++...+..++..+..++.++.+
T Consensus 98 a~~~d~rt~~~~~ery~~~~~~~~s-~~~s---~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~rv 173 (512)
T COG5147 98 ADYKDRRTAQQCVERYVNTLEDLSS-THDS---KLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRV 173 (512)
T ss_pred ccccCccchHHHHHHHHHHhhhhhc-cccc---cccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHcccc
Confidence 99 6779999999999999988766 3332 34566778899999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhHHHHHHHHHHHhHHHHHHcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcHHHHHHhhhhccCccc
Q psy10643 166 KKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGELRS 245 (769)
Q Consensus 166 kiAkrk~R~~~~~k~r~~a~Lqkrrelk~agi~~~~~~~k~~~~dy~~~ip~e~~p~~g~~~~~~e~~~~~~~~~~~~~~ 245 (769)
..+..+-|......+.+.+.+|.++++++++|...-...+.. +|+ +.+.+|+|++.+++.....++.|-.+.
T Consensus 174 ~~~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~~~~~------~~~--k~f~~~~~~~~e~~i~~~~~~~~~sr~ 245 (512)
T COG5147 174 SKADVKPREKGEENNPDIEDLQEMKELKSASITRHLILPSKS------EIN--KAFKKGETLALEQEINEYKEKKGLSRK 245 (512)
T ss_pred hHhhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhhhhhh------hhc--cccchhHHHHHHHHHHHHHHHhcccHH
Confidence 999999999999999999999999999999998663222222 666 889999999998884322222222222
Q ss_pred HHHHHH----hhHHHHH---HH---HhhcCCchHHHh------hcccccccccccCCCCCCCChHHHHHHHHhhhhhHHH
Q psy10643 246 EKEERE----RKKDKQK---LK---QRKENDIPTAML------QNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVA 309 (769)
Q Consensus 246 ~~~~~~----~~~~~~~---~k---~~~~~~~~~~~~------~~~~~~~kr~kl~lp~pq~~~~el~~ivk~g~~~~~a 309 (769)
...+.. +.+++-. .+ -+..+.+-..+. .....-.++.++.|+.|+++-...--.|+.+.+.-..
T Consensus 246 q~~~~Iws~~~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~~~wt~e~~~eL~~~~~~~~~~w~~ig~~~~rmp~ 325 (512)
T COG5147 246 QFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIGKLLGRMPN 325 (512)
T ss_pred HHHhhccccccccccccchhhcccccccccchHHHHHHhhhHHhhhccCccccccccccccccccchhhHhhhhhccCcH
Confidence 221111 0000000 00 000111111111 1113457899999999999998888888776654333
Q ss_pred HHHHhhcCCCCcchhhhccCCCCCCCCCCCCCCCC--CchhHHHHHHHHHHHhhcCCCCCCCCCCCC--C--CCCCCCCC
Q psy10643 310 REVAIESGSGPTSDALLTDYSIGTGAAMKTPRTPA--PQTDRILQEAQNMMALTHVDTPLKGGLNTP--L--LAPDFSGV 383 (769)
Q Consensus 310 ~~~~~~~~~~~~t~~l~~~y~~~~~~~~~t~r~p~--~~~d~i~~ea~n~~~~~~~~tpl~gg~n~~--l--~~~~~~g~ 383 (769)
.-+-. -.+|...+.++.|+|=++. +.-|.|..|.++-..+..-+--+++-++-+ + |..+|-|+
T Consensus 326 ~crd~-----------wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 394 (512)
T COG5147 326 DCRDR-----------WRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQQSSRILWLLIAQNIRNRLQHHCRDKYGV 394 (512)
T ss_pred HHHHH-----------HhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHhhhccccCCCCCcccc
Confidence 22111 1223333335666776662 223888898888877776666666666555 2 33467777
Q ss_pred CCC
Q psy10643 384 TPS 386 (769)
Q Consensus 384 ~p~ 386 (769)
++.
T Consensus 395 ~~~ 397 (512)
T COG5147 395 LIS 397 (512)
T ss_pred ccc
Confidence 765
No 6
>KOG0048|consensus
Probab=99.90 E-value=3.6e-24 Score=222.66 Aligned_cols=107 Identities=24% Similarity=0.448 Sum_probs=102.3
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhh-hcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCCCccc
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRT 85 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp-~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~~W~~ 85 (769)
+.+|+||+|||++|+.+|.+||.++|..|++.++ +|+.++||.||.+||+|++++|.||+|||.+|++++..+|++|+.
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 3469999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCCCHHHHHHHHHHhhhHHhhhcc
Q psy10643 86 IAP-IIGRTAAQCLERYEFLLDQAQKKEE 113 (769)
Q Consensus 86 IA~-l~GRT~~QCreRw~~lL~p~ikk~~ 113 (769)
||. |||||++.++++|+..|+..+....
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 999 9999999999999999988776653
No 7
>KOG0048|consensus
Probab=99.89 E-value=3e-23 Score=215.87 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=98.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CCcccccc-CC-CCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCC
Q psy10643 57 PSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-II-GRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNP 133 (769)
Q Consensus 57 p~ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~-GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~p 133 (769)
+.+.+|+||+|||++|+.+|+.|| .+|..|++ +. ||++++||.||.|||+|.++++.|
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f------------------- 65 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF------------------- 65 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC-------------------
Confidence 345579999999999999999999 68999999 76 999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHhhcC-chhhhhHHHHHHHHHHHhHHH
Q psy10643 134 ETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKR-KAREKQLEEARRLAALQKRRE 191 (769)
Q Consensus 134 etkpa~Pd~~d~~edE~emL~ea~arlgN~w~kiAkr-k~R~~~~~k~r~~a~Lqkrre 191 (769)
|++|+.+|.++|+.+||+|++||++ +||++|.+||.|++.|+||..
T Consensus 66 ------------T~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 66 ------------SDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred ------------CHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999988754
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.87 E-value=1.9e-22 Score=207.51 Aligned_cols=120 Identities=24% Similarity=0.359 Sum_probs=106.6
Q ss_pred hhhcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCC-CCcccccc-C-CCCCHHHHHHHHHHhhhHHhhhccCC
Q psy10643 39 LHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-I-IGRTAAQCLERYEFLLDQAQKKEEGE 115 (769)
Q Consensus 39 Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l-~GRT~~QCreRw~~lL~p~ikk~~~~ 115 (769)
+++|++.-| ..+++++++||+|||++|+.+|++|| .+|..||. + +|||++|||+||.++|+|.+++++|
T Consensus 10 ~~~~~~pcc-------~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW- 81 (249)
T PLN03212 10 VSKKTTPCC-------TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI- 81 (249)
T ss_pred CCCCCCCCc-------ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC-
Confidence 456666555 34578899999999999999999999 69999999 6 6999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHhhcC-chhhhhHHHHHHHHHHHhHHHHHH
Q psy10643 116 DVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKR-KAREKQLEEARRLAALQKRRELRA 194 (769)
Q Consensus 116 ~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arlgN~w~kiAkr-k~R~~~~~k~r~~a~Lqkrrelk~ 194 (769)
|++|+++|.+++..+||+|++||+. +||+++.++|||+..|+|+ ++.
T Consensus 82 ------------------------------T~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~--l~r 129 (249)
T PLN03212 82 ------------------------------TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK--LLR 129 (249)
T ss_pred ------------------------------ChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHH--HHh
Confidence 9999999999999999999999999 9999999999999998766 344
Q ss_pred cCCC
Q psy10643 195 AGIE 198 (769)
Q Consensus 195 agi~ 198 (769)
.||.
T Consensus 130 ~~i~ 133 (249)
T PLN03212 130 QGID 133 (249)
T ss_pred cCCC
Confidence 4443
No 9
>PLN03091 hypothetical protein; Provisional
Probab=99.84 E-value=6.7e-21 Score=208.53 Aligned_cols=113 Identities=26% Similarity=0.355 Sum_probs=103.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhCC-CCcccccc-C-CCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCC
Q psy10643 55 LDPSIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-I-IGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDP 131 (769)
Q Consensus 55 L~p~ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l-~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p 131 (769)
..+.+++++||+|||++|+.+|.+|| .+|..||. + +|||++|||+||.++|+|.+++++|
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpW----------------- 70 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF----------------- 70 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCC-----------------
Confidence 34678999999999999999999999 58999999 5 5899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHhhcC-chhhhhHHHHHHHHHHHhHHHHHHcCCCcc
Q psy10643 132 NPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKR-KAREKQLEEARRLAALQKRRELRAAGIEVA 200 (769)
Q Consensus 132 ~petkpa~Pd~~d~~edE~emL~ea~arlgN~w~kiAkr-k~R~~~~~k~r~~a~Lqkrrelk~agi~~~ 200 (769)
+.+|+++|.++++.+|++|.+||+. +||+++.+||||+..|+|+ ++..||+..
T Consensus 71 --------------T~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk--lr~~~I~p~ 124 (459)
T PLN03091 71 --------------SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK--LRQRGIDPN 124 (459)
T ss_pred --------------CHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHcCCCCC
Confidence 9999999999999999999999999 9999999999999998876 455566543
No 10
>KOG0049|consensus
Probab=99.77 E-value=1.1e-18 Score=195.71 Aligned_cols=146 Identities=26% Similarity=0.319 Sum_probs=131.2
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCC---chhHHHHHhhhcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCC-CC
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMP-TQ 82 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~---~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G-~~ 82 (769)
++...||.|||.+|+++|.....+ +|.+|-.+|+||+..|...||+..|+|++++|+||.+||.+|+.+|.+|| ..
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kd 382 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKD 382 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccc
Confidence 566889999999999999887543 89999999999999999999999999999999999999999999999999 58
Q ss_pred cccccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Q psy10643 83 WRTIAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLA 161 (769)
Q Consensus 83 W~~IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arlg 161 (769)
|..|-. +|||+..|||+||.+.|....+.+.| +-.|++.|.++...+|
T Consensus 383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW-------------------------------~l~edeqL~~~V~~YG 431 (939)
T KOG0049|consen 383 WAKVRQAVPNRSDSQCRERYTNVLNRSAKVERW-------------------------------TLVEDEQLLYAVKVYG 431 (939)
T ss_pred hhhHHHhcCCccHHHHHHHHHHHHHHhhccCce-------------------------------eecchHHHHHHHHHHc
Confidence 999999 99999999999999999999999999 6777788999999998
Q ss_pred -hhhhHhhcC-chhhhhHHHHHHH
Q psy10643 162 -NTQGKKAKR-KAREKQLEEARRL 183 (769)
Q Consensus 162 -N~w~kiAkr-k~R~~~~~k~r~~ 183 (769)
-.|.|+|-. +.|+..+--.||.
T Consensus 432 ~g~WakcA~~Lp~~t~~q~~rrR~ 455 (939)
T KOG0049|consen 432 KGNWAKCAMLLPKKTSRQLRRRRL 455 (939)
T ss_pred cchHHHHHHHccccchhHHHHHHH
Confidence 579999998 6666644444443
No 11
>KOG0049|consensus
Probab=99.63 E-value=2.5e-16 Score=176.94 Aligned_cols=151 Identities=26% Similarity=0.318 Sum_probs=139.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhh-cChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCC----C
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMP----T 81 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~-Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G----~ 81 (769)
+++..|++|||+.|+.+...+|..+|..||..|++ |+..||..||+..+.. +....||+|||.+|..+|+... .
T Consensus 251 ~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~-L~ekeWsEEed~kL~alV~~~~~nShI 329 (939)
T KOG0049|consen 251 WNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQ-LSEKEWSEEEDTKLIALVKITSINSHI 329 (939)
T ss_pred cchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHH-HHhhhcchhhhHHHHHHHHHhhccCcc
Confidence 56789999999999999999999999999999996 9999999999987664 5568999999999999999865 3
Q ss_pred Ccccccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHh
Q psy10643 82 QWRTIAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARL 160 (769)
Q Consensus 82 ~W~~IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arl 160 (769)
+|..|-. |+||+..|..-||.+.|+|.++++.| +.+||-||..|++++
T Consensus 330 ~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~w-------------------------------t~~ED~~L~~AV~~Y 378 (939)
T KOG0049|consen 330 QWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRW-------------------------------TDQEDVLLVCAVSRY 378 (939)
T ss_pred chHHHHHhcCCcchhhhhhhheeccCccccCCCC-------------------------------CCHHHHHHHHHHHHh
Confidence 8999999 99999999999999999999999999 999999999999999
Q ss_pred hhh-hhHhhcC-chhhhhHHHHHHHHHHHhH
Q psy10643 161 ANT-QGKKAKR-KAREKQLEEARRLAALQKR 189 (769)
Q Consensus 161 gN~-w~kiAkr-k~R~~~~~k~r~~a~Lqkr 189 (769)
|-+ |.|+..- ++|++.+..-|+...|-.+
T Consensus 379 g~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 379 GAKDWAKVRQAVPNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred CccchhhHHHhcCCccHHHHHHHHHHHHHHh
Confidence 966 9998888 9999999999999887655
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.53 E-value=1.1e-14 Score=120.13 Aligned_cols=60 Identities=42% Similarity=0.823 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCCCCCCCCHHHHHHH
Q psy10643 12 IFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKL 72 (769)
Q Consensus 12 WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~L 72 (769)
||++||++|+.+|..|| ++|..||..|+.||+.||+.||.++|.|.+++++||.+||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 5999999999889999999999999999999999999999987
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.22 E-value=8.5e-12 Score=99.13 Aligned_cols=47 Identities=40% Similarity=0.619 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCchhHHHHHhh-hcChhhhhhhhcccc
Q psy10643 9 RWVIFVFQDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWFEWL 55 (769)
Q Consensus 9 kG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp-~Rs~~QCr~RW~~~L 55 (769)
+|+||.+||++|+.+|.+||.++|..||..|| +||+.||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999877999999999 999999999999875
No 14
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.20 E-value=9.9e-12 Score=102.64 Aligned_cols=51 Identities=35% Similarity=0.586 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhCCCCcccccc-CCCCCHHHHHHHHHHhhhHHhhhccC
Q psy10643 64 WSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLDQAQKKEEG 114 (769)
Q Consensus 64 WT~EEDe~Ll~lvk~~G~~W~~IA~-l~GRT~~QCreRw~~lL~p~ikk~~~ 114 (769)
||.+||.+|+.+|..||.+|..||. |+.||+.+|+.||.++|.+.+++++|
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~w 52 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPW 52 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSS
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCc
Confidence 9999999999999999999999999 64499999999999999999999988
No 15
>KOG0051|consensus
Probab=99.16 E-value=4.8e-11 Score=136.50 Aligned_cols=105 Identities=27% Similarity=0.461 Sum_probs=92.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCC--CCCCCCHHHHHHHHHHHH-------h
Q psy10643 8 KRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSI--KKTEWSREEDEKLLHLAK-------L 78 (769)
Q Consensus 8 KkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~i--kkg~WT~EEDe~Ll~lvk-------~ 78 (769)
++|.||++|++.|..+|..+| ++|..|+..|+ |.+..|+.||.++..++- +++.||.+|.++|+.+|. .
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg-r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q 460 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG-RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ 460 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc-cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999 69999999998 999999999999999874 899999999999999995 2
Q ss_pred C-------------------CCCcccccc-CCCCCHHHHHHHHHHhhhHH-hhhccC
Q psy10643 79 M-------------------PTQWRTIAP-IIGRTAAQCLERYEFLLDQA-QKKEEG 114 (769)
Q Consensus 79 ~-------------------G~~W~~IA~-l~GRT~~QCreRw~~lL~p~-ikk~~~ 114 (769)
+ +-+|..|+. +..|+..||+-+|+.++... .+...|
T Consensus 461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~ 517 (607)
T KOG0051|consen 461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQE 517 (607)
T ss_pred ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccc
Confidence 2 237999999 56699999999999888544 444455
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.06 E-value=8.7e-11 Score=93.36 Aligned_cols=45 Identities=49% Similarity=0.839 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC-cccccc-CC-CCCHHHHHHHHHHhh
Q psy10643 61 KTEWSREEDEKLLHLAKLMPTQ-WRTIAP-II-GRTAAQCLERYEFLL 105 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G~~-W~~IA~-l~-GRT~~QCreRw~~lL 105 (769)
+++||.+||++|+++|.+||.. |..||. ++ |||+.||++||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999987 999999 88 999999999999985
No 17
>KOG0051|consensus
Probab=98.95 E-value=1.1e-09 Score=125.60 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=120.5
Q ss_pred cccCCCCHHHHHHHHHHHHHhCC-----------------------CchhHHHHHhhhcChhhhhh---hhccccCCCCC
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGK-----------------------NQWSRIASLLHRKSAKQCKA---RWFEWLDPSIK 60 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~-----------------------~~W~~IA~~Lp~Rs~~QCr~---RW~~~L~p~ik 60 (769)
++.+.|+.+||..|...|..|-. +.|+.|...||.|+....+. |=++.|.+ .
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~--~ 383 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFEN--K 383 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccc--c
Confidence 56689999999999999988711 25899999999999999888 44445554 8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCccccccCCCCCHHHHHHHHHHhhhHHh--hhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10643 61 KTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQ--KKEEGEDVADDPRKLKPGEIDPNPETKPA 138 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G~~W~~IA~l~GRT~~QCreRw~~lL~p~i--kk~~~~~~~dd~r~l~pg~~~p~petkpa 138 (769)
+|.||++|++.|..+|.++|+.|..|+.++||.+..|+.||.++....- +++.|
T Consensus 384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~~~r~~W------------------------ 439 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVKCGSKRNRGAW------------------------ 439 (607)
T ss_pred cCCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhccccccccCcc------------------------
Confidence 9999999999999999999999999999999999999999999999884 78888
Q ss_pred CCCCCCCCHHHHHHHHHHHH-------Hh--hh-----------------hhhHhhcC-chhhhhHHHHHHHHHHHhH
Q psy10643 139 RPDPKDMDEDELEMLSEARA-------RL--AN-----------------TQGKKAKR-KAREKQLEEARRLAALQKR 189 (769)
Q Consensus 139 ~Pd~~d~~edE~emL~ea~a-------rl--gN-----------------~w~kiAkr-k~R~~~~~k~r~~a~Lqkr 189 (769)
+-+|.+.|..++. .+ .| .|.-+++. -.|.+...+..|+-.+-+.
T Consensus 440 -------s~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 440 -------SIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred -------hHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhH
Confidence 5555555555442 11 11 38888886 6777888888888765444
No 18
>KOG0050|consensus
Probab=98.90 E-value=5.1e-09 Score=116.91 Aligned_cols=140 Identities=26% Similarity=0.230 Sum_probs=112.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-CCcccccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q psy10643 59 IKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETK 136 (769)
Q Consensus 59 ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petk 136 (769)
++.|.|+.-||+.|...|.+|| ++|+.|++ ++-.|+.||+.||+.+|+|.+++..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tew---------------------- 62 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEW---------------------- 62 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhh----------------------
Confidence 4678999999999999999999 69999999 77899999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhhhhhHhhcCchhhhhHHHHHHHHHHHhHHHHHHcCCCccccccccCCCCCCCCCC
Q psy10643 137 PARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIP 216 (769)
Q Consensus 137 pa~Pd~~d~~edE~emL~ea~arlgN~w~kiAkrk~R~~~~~k~r~~a~Lqkrrelk~agi~~~~~~~k~~~~dy~~~ip 216 (769)
+-+|++.|.++-..+-+.|.-||---||+.++..-|+...|-..-..-...-.+.-.+-+-..++.| |
T Consensus 63 ---------s~eederlLhlakl~p~qwrtIa~i~gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn---~ 130 (617)
T KOG0050|consen 63 ---------SREEDERLLHLAKLEPTQWRTIADIMGRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPN---Q 130 (617)
T ss_pred ---------hhhHHHHHHHHHHhcCCccchHHHHhhhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCc---c
Confidence 8899999999999999999999999999999999999877755432222211111112344555544 5
Q ss_pred CCCCCCCCCCCCcHHH
Q psy10643 217 FEKRPAPGFYDTSKEE 232 (769)
Q Consensus 217 ~e~~p~~g~~~~~~e~ 232 (769)
.-....|..||..+++
T Consensus 131 e~~~aRpd~~dmdEde 146 (617)
T KOG0050|consen 131 ETNPARPDGFDMDEDE 146 (617)
T ss_pred ccccccCCcccchHHH
Confidence 5555667788888877
No 19
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.87 E-value=2.4e-09 Score=82.63 Aligned_cols=48 Identities=40% Similarity=0.665 Sum_probs=44.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccC
Q psy10643 9 RWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLD 56 (769)
Q Consensus 9 kG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~ 56 (769)
++.||.+||..|..++..||..+|..||..|++||+.+|+.||..++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 478999999999999999997799999999999999999999998764
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.74 E-value=8e-09 Score=79.74 Aligned_cols=46 Identities=50% Similarity=0.830 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CCcccccc-CCCCCHHHHHHHHHHhhh
Q psy10643 61 KTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLD 106 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~GRT~~QCreRw~~lL~ 106 (769)
+++||.+||.+|+.++..|| .+|..||. +++||+.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 99999999 899999999999998874
No 21
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.68 E-value=2e-08 Score=76.38 Aligned_cols=45 Identities=44% Similarity=0.741 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhcccc
Q psy10643 11 VIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 55 (769)
Q Consensus 11 ~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L 55 (769)
.||.+||..|..++..||..+|..||..|++||+.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999779999999999999999999998753
No 22
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.67 E-value=1.4e-08 Score=115.77 Aligned_cols=101 Identities=29% Similarity=0.364 Sum_probs=93.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCC-CCcccccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCC
Q psy10643 58 SIKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPET 135 (769)
Q Consensus 58 ~ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~pet 135 (769)
..+.|.|+..||+.|+.+|+.+| ++|+.||. |.-++++||+.||+++++|.+++..|
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~--------------------- 75 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNW--------------------- 75 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccc---------------------
Confidence 45678999999999999999999 69999999 77799999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhhhhHhhcCch-hhhhHHHHHHHHHHHhH
Q psy10643 136 KPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKA-REKQLEEARRLAALQKR 189 (769)
Q Consensus 136 kpa~Pd~~d~~edE~emL~ea~arlgN~w~kiAkrk~-R~~~~~k~r~~a~Lqkr 189 (769)
+.+|++.|..+...+++.|.-||..++ |+.+....||+..|.-.
T Consensus 76 ----------~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~~~~ 120 (512)
T COG5147 76 ----------SEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDL 120 (512)
T ss_pred ----------cHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHhhhh
Confidence 999999999999999999999999955 99999999999776544
No 23
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.57 E-value=4.9e-08 Score=74.27 Aligned_cols=43 Identities=47% Similarity=0.782 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhCC-CCcccccc-CCCCCHHHHHHHHHHhh
Q psy10643 63 EWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLL 105 (769)
Q Consensus 63 ~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~GRT~~QCreRw~~lL 105 (769)
+||.+||..|+.++..+| .+|..||. +++||+.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999 88999999999998864
No 24
>KOG0457|consensus
Probab=97.68 E-value=0.00012 Score=81.59 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=45.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccC
Q psy10643 9 RWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLD 56 (769)
Q Consensus 9 kG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~ 56 (769)
...||.+|+-.|++++..||.+||..||.+++.|+..+|+.+|.+++-
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999998754
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.12 E-value=0.00064 Score=56.72 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=41.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCch---hHHHHHhh-hc-Chhhhhhhhcccc
Q psy10643 9 RWVIFVFQDEILKAAVMKYGKNQW---SRIASLLH-RK-SAKQCKARWFEWL 55 (769)
Q Consensus 9 kG~WT~EEDe~L~~~V~kyG~~~W---~~IA~~Lp-~R-s~~QCr~RW~~~L 55 (769)
+-.||+||...++.+|..||.++| ..|++.|. .+ |..||+.+.+.|.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345999999999999999998899 99999986 56 9999999988764
No 26
>KOG0457|consensus
Probab=96.57 E-value=0.0043 Score=69.66 Aligned_cols=48 Identities=29% Similarity=0.474 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-CCcccccc-CCCCCHHHHHHHHHHhhh
Q psy10643 59 IKKTEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLD 106 (769)
Q Consensus 59 ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~GRT~~QCreRw~~lL~ 106 (769)
+-...||.+|+-.|++++..|| +||..||. +-.||...|+++|.+++-
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 4456799999999999999999 89999999 556999999999997764
No 27
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.30 E-value=0.013 Score=60.35 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhHHHHHhh---hcChhhhhhhhcccc-CCC--------------------CCCCCCCH
Q psy10643 11 VIFVFQDEILKAAVMKYGKNQWSRIASLLH---RKSAKQCKARWFEWL-DPS--------------------IKKTEWSR 66 (769)
Q Consensus 11 ~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp---~Rs~~QCr~RW~~~L-~p~--------------------ikkg~WT~ 66 (769)
+|++++|-.|+.+|..-. +-..|+..+. .-|...+..||+..| +|. ..+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999997544 6777777665 567788899999765 332 23678999
Q ss_pred HHHHHHHHHHHhCCC---Ccccccc-----C-CCCCHHHHHHHHHHhhhHHh
Q psy10643 67 EEDEKLLHLAKLMPT---QWRTIAP-----I-IGRTAAQCLERYEFLLDQAQ 109 (769)
Q Consensus 67 EEDe~Ll~lvk~~G~---~W~~IA~-----l-~GRT~~QCreRw~~lL~p~i 109 (769)
+|++.|......... .|..|=. | ++||+++...+|..+..-.+
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L 130 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL 130 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence 999999997755432 4555443 2 57999999999997654443
No 28
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.28 E-value=0.0037 Score=70.53 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=42.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhcc
Q psy10643 8 KRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFE 53 (769)
Q Consensus 8 KkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~ 53 (769)
....||.+|--+|.+.|+.|| .+|.+||.++++||..||..|+.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~ 322 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQ 322 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHc
Confidence 556899999999999999999 499999999999999999999876
No 29
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.01 E-value=0.01 Score=49.56 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCC-Cc---ccccc-CC-CC-CHHHHHHHHHHhhh
Q psy10643 61 KTEWSREEDEKLLHLAKLMPT-QW---RTIAP-II-GR-TAAQCLERYEFLLD 106 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G~-~W---~~IA~-l~-GR-T~~QCreRw~~lL~ 106 (769)
+-.||.||..+.++++..+|. +| ..|+. +. .+ |..||+.+++.|..
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999995 99 99998 53 35 99999999998753
No 30
>KOG1279|consensus
Probab=96.01 E-value=0.0056 Score=70.82 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=41.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhcc
Q psy10643 9 RWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFE 53 (769)
Q Consensus 9 kG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~ 53 (769)
++.||.+|.-+|+++|+.|| .+|.+||.++++||..||..++.+
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred CCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHh
Confidence 57899999999999999999 499999999999999999999866
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.40 E-value=0.011 Score=58.74 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=42.9
Q ss_pred cccCCCCHHHHHHHHHHHHHh---CC---CchhHHHHHhhhcChhhhhhhhccccCC
Q psy10643 7 LKRWVIFVFQDEILKAAVMKY---GK---NQWSRIASLLHRKSAKQCKARWFEWLDP 57 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~ky---G~---~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p 57 (769)
+|...||.+||.+|-..|-+| |. ..+..|+..|+ ||+.-|..||+.++..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~-RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN-RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-ccHHHhcchHHHHHHH
Confidence 467899999999999999998 31 36888898888 9999999999998753
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.37 E-value=0.0068 Score=60.25 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhC----CC---CccccccCCCCCHHHHHHHHHHhhhHHhhhc
Q psy10643 60 KKTEWSREEDEKLLHLAKLM----PT---QWRTIAPIIGRTAAQCLERYEFLLDQAQKKE 112 (769)
Q Consensus 60 kkg~WT~EEDe~Ll~lvk~~----G~---~W~~IA~l~GRT~~QCreRw~~lL~p~ikk~ 112 (769)
+...||.|||.+|-+.|-.| ++ -+..|+.-.|||+..|.-||+.+++......
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHHHHHHH
Confidence 46789999999998887654 33 4778888889999999999999999776543
No 33
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.97 E-value=0.026 Score=49.79 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHH--h----C--C-----CchhHHHHHhh----hcChhhhhhhhccc
Q psy10643 10 WVIFVFQDEILKAAVMK--Y----G--K-----NQWSRIASLLH----RKSAKQCKARWFEW 54 (769)
Q Consensus 10 G~WT~EEDe~L~~~V~k--y----G--~-----~~W~~IA~~Lp----~Rs~~QCr~RW~~~ 54 (769)
..||.+|...|+.++.. + + . .-|..||..|. .||+.||+.+|.+.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46999999999999977 2 1 1 15999999996 69999999999873
No 34
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.21 E-value=0.033 Score=60.45 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccC
Q psy10643 10 WVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLD 56 (769)
Q Consensus 10 G~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~ 56 (769)
--|+..|+-.|+.+....|.+||..||.+++.|+...|+.+|..++.
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999998876
No 35
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.15 E-value=0.045 Score=47.49 Aligned_cols=48 Identities=29% Similarity=0.353 Sum_probs=40.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----------------CchhHHHHHhh-----hcChhhhhhhhcccc
Q psy10643 8 KRWVIFVFQDEILKAAVMKYGK----------------NQWSRIASLLH-----RKSAKQCKARWFEWL 55 (769)
Q Consensus 8 KkG~WT~EEDe~L~~~V~kyG~----------------~~W~~IA~~Lp-----~Rs~~QCr~RW~~~L 55 (769)
|+..||.+|.++|+.+|.+|.. ..|..|+..|. .||..||+.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998821 26999999884 699999999998853
No 36
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.10 E-value=0.015 Score=51.20 Aligned_cols=49 Identities=31% Similarity=0.588 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHh------C---C---C--Ccccccc-C----CCCCHHHHHHHHHHhhhHHhh
Q psy10643 62 TEWSREEDEKLLHLAKL------M---P---T--QWRTIAP-I----IGRTAAQCLERYEFLLDQAQK 110 (769)
Q Consensus 62 g~WT~EEDe~Ll~lvk~------~---G---~--~W~~IA~-l----~GRT~~QCreRw~~lL~p~ik 110 (769)
..||.+|...|+.++.. + + + -|..||. | ..||+.||+.+|.++...-.+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999998865 1 1 1 4999999 5 359999999999997765544
No 37
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=94.01 E-value=0.061 Score=61.12 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcccccc-CCCCCHHHHHHHHHHhh--hHHhhhccC
Q psy10643 60 KKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLL--DQAQKKEEG 114 (769)
Q Consensus 60 kkg~WT~EEDe~Ll~lvk~~G~~W~~IA~-l~GRT~~QCreRw~~lL--~p~ikk~~~ 114 (769)
....||.+|-.+|++.+..||..|.+||. +-.+|..||..||.++- ++.+.+..+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~~ 335 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGDG 335 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhcccC
Confidence 34589999999999999999999999999 67799999999998763 455555544
No 38
>KOG1279|consensus
Probab=93.81 E-value=0.077 Score=61.68 Aligned_cols=70 Identities=21% Similarity=0.409 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcccccc-CCCCCHHHHHHHHHHhhh--HHhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10643 61 KTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFLLD--QAQKKEEGEDVADDPRKLKPGEIDPNPETKP 137 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G~~W~~IA~-l~GRT~~QCreRw~~lL~--p~ikk~~~~~~~dd~r~l~pg~~~p~petkp 137 (769)
+..||.+|..+|++.+..||.+|.+||. +-+||..||-.+|.++-- +.+..... + +.|....|.+.+..
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~~~~-----~---~~~~~~~~~~~sq~ 324 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIEDPYLAKSEA-----S---LGPLSYGPVPFSQD 324 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCccchhhhhccc-----c---cCccccCCCccccC
Confidence 5679999999999999999999999999 778999999999987643 22222111 1 56666666654444
Q ss_pred C
Q psy10643 138 A 138 (769)
Q Consensus 138 a 138 (769)
-
T Consensus 325 g 325 (506)
T KOG1279|consen 325 G 325 (506)
T ss_pred C
Confidence 4
No 39
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.35 E-value=0.048 Score=55.01 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=40.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCC------chhHHHHHhhhcChhhhhhhhccccC
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKN------QWSRIASLLHRKSAKQCKARWFEWLD 56 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~------~W~~IA~~Lp~Rs~~QCr~RW~~~L~ 56 (769)
.|...||.|+|.+|-..|-.|+.. ....++..|. |++..|..||+.++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~-rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK-RTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-hhHHHHHhHHHHHHH
Confidence 678899999999999999998643 3555666666 999999999977665
No 40
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=92.45 E-value=0.086 Score=45.27 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHhCC--------C-Ccccccc-CC-CCCHHHHHHHHHHhhhHH
Q psy10643 61 KTEWSREEDEKLLHLAKLMP--------T-QWRTIAP-II-GRTAAQCLERYEFLLDQA 108 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G--------~-~W~~IA~-l~-GRT~~QCreRw~~lL~p~ 108 (769)
+.+||.+||..|+..|..+. + -|..++. .+ .+|..+.|+||...|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 46899999999999996542 1 3888888 56 899999999999988764
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=91.94 E-value=0.79 Score=57.86 Aligned_cols=99 Identities=21% Similarity=0.327 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhh----hhccc--c-----------------------------
Q psy10643 11 VIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKA----RWFEW--L----------------------------- 55 (769)
Q Consensus 11 ~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~----RW~~~--L----------------------------- 55 (769)
.||.-+=..++.+..+||..+...||..|.++|...++. -|.++ |
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999998888887753 12111 0
Q ss_pred ------C---------CCCCCCCCCHHHHHHHHHHHHhCC-CCccccc------c-------CCCCCHHHHHHHHHHhhh
Q psy10643 56 ------D---------PSIKKTEWSREEDEKLLHLAKLMP-TQWRTIA------P-------IIGRTAAQCLERYEFLLD 106 (769)
Q Consensus 56 ------~---------p~ikkg~WT~EEDe~Ll~lvk~~G-~~W~~IA------~-------l~GRT~~QCreRw~~lL~ 106 (769)
+ +..++..||.+||.-|+-.+.+|| .+|..|- . +..||+..+..|...++.
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 0 122345699999999999999999 7899883 2 136999999999999887
Q ss_pred HHh
Q psy10643 107 QAQ 109 (769)
Q Consensus 107 p~i 109 (769)
-..
T Consensus 986 ~~~ 988 (1033)
T PLN03142 986 LIE 988 (1033)
T ss_pred HHH
Confidence 543
No 42
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=91.85 E-value=0.13 Score=44.29 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHhC--------CCchhHHHHHhh-hcChhhhhhhhccccCCCC
Q psy10643 10 WVIFVFQDEILKAAVMKYG--------KNQWSRIASLLH-RKSAKQCKARWFEWLDPSI 59 (769)
Q Consensus 10 G~WT~EEDe~L~~~V~kyG--------~~~W~~IA~~Lp-~Rs~~QCr~RW~~~L~p~i 59 (769)
-+||.+||.+|...|..+. ..-|..++..-+ ++|-.+-++||...|.+..
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4699999999999997652 125999999888 8999999999999887653
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.48 E-value=0.079 Score=53.46 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC----CC---ccccccCCCCCHHHHHHHHHHhhhHHh
Q psy10643 59 IKKTEWSREEDEKLLHLAKLMP----TQ---WRTIAPIIGRTAAQCLERYEFLLDQAQ 109 (769)
Q Consensus 59 ikkg~WT~EEDe~Ll~lvk~~G----~~---W~~IA~l~GRT~~QCreRw~~lL~p~i 109 (769)
.+...||.|+|.+|-+.|-.|+ .+ +..++...+||+.+|..||+.+++...
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 3567899999999977665554 33 444445678999999999999988543
No 44
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=88.79 E-value=0.26 Score=53.86 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCcccccc-CCCCCHHHHHHHHHHhhhH
Q psy10643 62 TEWSREEDEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLERYEFLLDQ 107 (769)
Q Consensus 62 g~WT~EEDe~Ll~lvk~~G-~~W~~IA~-l~GRT~~QCreRw~~lL~p 107 (769)
..|+.+|+.+|++.....| ++|..||. +-.|+...|+++|..+...
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 4599999999999999999 89999999 5559999999999988864
No 45
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=88.63 E-value=0.3 Score=42.32 Aligned_cols=50 Identities=30% Similarity=0.433 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCC-----------------Ccccccc-C----C-CCCHHHHHHHHHHhhhHHhh
Q psy10643 61 KTEWSREEDEKLLHLAKLMPT-----------------QWRTIAP-I----I-GRTAAQCLERYEFLLDQAQK 110 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~G~-----------------~W~~IA~-l----~-GRT~~QCreRw~~lL~p~ik 110 (769)
+..||.+|...|+.++..|.. -|..|+. | + .||..+|+.+|.++.....+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999987621 3999998 4 2 49999999999998865543
No 46
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=82.97 E-value=1.2 Score=49.81 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhcc
Q psy10643 11 VIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFE 53 (769)
Q Consensus 11 ~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~ 53 (769)
+||..|-+++..+...+|+ +++.||+++|+|+.+|++.+|.+
T Consensus 367 ~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 367 RWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred cccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHH
Confidence 7999999999999999997 99999999999999999999865
No 47
>KOG4282|consensus
Probab=82.93 E-value=0.86 Score=50.45 Aligned_cols=50 Identities=30% Similarity=0.586 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhC----------CCCcccccc-C--CC--CCHHHHHHHHHHhhhHHhh
Q psy10643 61 KTEWSREEDEKLLHLAKLM----------PTQWRTIAP-I--IG--RTAAQCLERYEFLLDQAQK 110 (769)
Q Consensus 61 kg~WT~EEDe~Ll~lvk~~----------G~~W~~IA~-l--~G--RT~~QCreRw~~lL~p~ik 110 (769)
...|+.+|-..|+++...+ +.-|..||. + .| ||+.||+.+|.++...-.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999987632 346999999 5 34 9999999999998876543
No 48
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=78.71 E-value=3.2 Score=39.80 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=35.1
Q ss_pred cccCCCCHHHHHHHHHHHHHhCC---CchhHHHHHhh------------hcChhhhhhhh
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGK---NQWSRIASLLH------------RKSAKQCKARW 51 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~---~~W~~IA~~Lp------------~Rs~~QCr~RW 51 (769)
-++..||.+||.-|+-.+.+||. +.|..|-..+- .||+..+..|-
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~ 106 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRC 106 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHH
Confidence 56789999999999999999999 89999977664 47777776664
No 49
>KOG4282|consensus
Probab=72.46 E-value=3.9 Score=45.31 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------CCCchhHHHHHhh----hcChhhhhhhhcccc
Q psy10643 10 WVIFVFQDEILKAAVMKY---------GKNQWSRIASLLH----RKSAKQCKARWFEWL 55 (769)
Q Consensus 10 G~WT~EEDe~L~~~V~ky---------G~~~W~~IA~~Lp----~Rs~~QCr~RW~~~L 55 (769)
..|+.+|-..|+.+..+. ...-|..||..+. .||+.||+.+|.+..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 579999999999998643 1136999999664 699999999998843
No 50
>KOG4167|consensus
Probab=70.97 E-value=4.2 Score=49.07 Aligned_cols=50 Identities=14% Similarity=0.397 Sum_probs=43.7
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccc
Q psy10643 4 YMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 54 (769)
Q Consensus 4 i~~vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~ 54 (769)
++|--.-+||+.|-.++..++-.|. .++-.|+..++++|..||-+-|+.|
T Consensus 614 Y~Y~gSd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 614 YHYAGSDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred eeecCcccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHHH
Confidence 3444456899999999999999999 5999999999999999999888775
No 51
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=69.21 E-value=5.6 Score=35.80 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=14.5
Q ss_pred cCCCCHHHHHHH--------HHHHHHhCCCchhHHHH
Q psy10643 9 RWVIFVFQDEIL--------KAAVMKYGKNQWSRIAS 37 (769)
Q Consensus 9 kG~WT~EEDe~L--------~~~V~kyG~~~W~~IA~ 37 (769)
.|.||+++|+.| ..++.+|| |..|+.
T Consensus 47 ~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 47 PGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 589999999999 34445555 455544
No 52
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=67.38 E-value=4.3 Score=45.65 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccc-CCCCCHHHHHHHHHHh
Q psy10643 62 TEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEFL 104 (769)
Q Consensus 62 g~WT~EEDe~Ll~lvk~~G~~W~~IA~-l~GRT~~QCreRw~~l 104 (769)
.+||..|-++...+...+|..+..|+. +|.|..+|++-.|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHH
Confidence 469999999999999999999999999 8999999999999754
No 53
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=66.77 E-value=13 Score=38.78 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCcccccc---CC-CCCHHHHHHHHHHhh-hHHhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10643 63 EWSREEDEKLLHLAKLMPTQWRTIAP---II-GRTAAQCLERYEFLL-DQAQKKEEGEDVADDPRKLKPGEIDPNPETKP 137 (769)
Q Consensus 63 ~WT~EEDe~Ll~lvk~~G~~W~~IA~---l~-GRT~~QCreRw~~lL-~p~ikk~~~~~~~dd~r~l~pg~~~p~petkp 137 (769)
.|++.+|-.|+..|. ++++-..|+. |. .-|-..+.+||+.+| +|.+.+..+. .-+ .-.|+...
T Consensus 1 rW~~~DDl~Li~av~-~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~----~m~-------~l~p~~~~ 68 (199)
T PF13325_consen 1 RWKPEDDLLLINAVE-QTNDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVA----AMR-------NLHPELIA 68 (199)
T ss_pred CCCchhhHHHHHHHH-HhcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHH----HHH-------hCCcchhh
Confidence 499999999998875 3445555555 33 478899999999887 6666655431 011 12344444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhh---hhHhh------cCchhhhhHHHHHHHHHHHhHHHHHHcCC
Q psy10643 138 ARPDPKDMDEDELEMLSEARARLANT---QGKKA------KRKAREKQLEEARRLAALQKRRELRAAGI 197 (769)
Q Consensus 138 a~Pd~~d~~edE~emL~ea~arlgN~---w~kiA------krk~R~~~~~k~r~~a~Lqkrrelk~agi 197 (769)
+.....-|+..|.++|........++ +.++= =+.+|+...-...|. .|.+.+-|....+
T Consensus 69 ~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~-lmkqy~LL~DQ~v 136 (199)
T PF13325_consen 69 AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWR-LMKQYHLLPDQSV 136 (199)
T ss_pred cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHH-HHHHhchhhcccc
Confidence 55556678999999998876554333 22221 127899999999888 3444444443333
No 54
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=61.89 E-value=11 Score=33.44 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHh---C----C-----CchhHHHHHhh-----hcChhhhhhhhccc
Q psy10643 11 VIFVFQDEILKAAVMKY---G----K-----NQWSRIASLLH-----RKSAKQCKARWFEW 54 (769)
Q Consensus 11 ~WT~EEDe~L~~~V~ky---G----~-----~~W~~IA~~Lp-----~Rs~~QCr~RW~~~ 54 (769)
.||++.++.|+.++... | . ..|..|+..|. ..+..||+.||...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 59999999999998654 1 1 15999999886 45788999998763
No 55
>KOG2656|consensus
Probab=57.59 E-value=10 Score=43.02 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=62.2
Q ss_pred CchhHHHHHhhhcChhhhhhhhccccCC-------------------------CCCCCCCCHHHHHHHHHHHHhCCCCcc
Q psy10643 30 NQWSRIASLLHRKSAKQCKARWFEWLDP-------------------------SIKKTEWSREEDEKLLHLAKLMPTQWR 84 (769)
Q Consensus 30 ~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p-------------------------~ikkg~WT~EEDe~Ll~lvk~~G~~W~ 84 (769)
..|..+.=..+.|...-...+|...-++ .++...||.+|-+-|..|++.|.-.|-
T Consensus 74 ~~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 74 RPWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CCceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 3677776555666666666777765322 123456999999999999999999999
Q ss_pred cccc-C-----CC-CCHHHHHHHHHHhhhHHhhhc
Q psy10643 85 TIAP-I-----IG-RTAAQCLERYEFLLDQAQKKE 112 (769)
Q Consensus 85 ~IA~-l-----~G-RT~~QCreRw~~lL~p~ikk~ 112 (769)
.|+. . .. ||-...++||+.....-.+-.
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 9997 3 33 999999999998877655533
No 56
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=54.23 E-value=7.5 Score=37.26 Aligned_cols=50 Identities=30% Similarity=0.367 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCC----Ccccccc-C------------CCCCHHHHHHHHHHhhhH
Q psy10643 58 SIKKTEWSREEDEKLLHLAKLMPT----QWRTIAP-I------------IGRTAAQCLERYEFLLDQ 107 (769)
Q Consensus 58 ~ikkg~WT~EEDe~Ll~lvk~~G~----~W~~IA~-l------------~GRT~~QCreRw~~lL~p 107 (769)
+.++..||.+||.-|+-.+.+||- .|..|-. + ..||+..+..|...++.-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 556788999999999999999885 8988764 2 259999999999998864
No 57
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=50.65 E-value=77 Score=29.61 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10643 727 SSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 765 (769)
Q Consensus 727 ~AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~ 765 (769)
..+..|++.+...+..+......++..+.++..++.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999988774
No 58
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=48.95 E-value=10 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCC-CCccccccCCCCCHHHHHHHHHHh
Q psy10643 67 EEDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFL 104 (769)
Q Consensus 67 EEDe~Ll~lvk~~G-~~W~~IA~l~GRT~~QCreRw~~l 104 (769)
+=|.+|+.+....+ ..|..||...|=|...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 34788899888887 699999999999999999999865
No 59
>smart00595 MADF subfamily of SANT domain.
Probab=48.11 E-value=13 Score=32.74 Aligned_cols=23 Identities=39% Similarity=0.784 Sum_probs=20.8
Q ss_pred chhHHHHHhhhcChhhhhhhhccc
Q psy10643 31 QWSRIASLLHRKSAKQCKARWFEW 54 (769)
Q Consensus 31 ~W~~IA~~Lp~Rs~~QCr~RW~~~ 54 (769)
.|..||..|+. +..+|+.+|.+.
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHH
Confidence 69999999986 999999999873
No 60
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=47.78 E-value=28 Score=27.31 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhcc
Q psy10643 15 FQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFE 53 (769)
Q Consensus 15 EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~ 53 (769)
+=|..|+.++...|...|..||..++ =|...|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg-lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG-LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC-cCHHHHHHHHHH
Confidence 34778888888889889999999988 899999999864
No 61
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.52 E-value=1.6e+02 Score=31.00 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHHHHHH------hcCCC---CCCC---hhHHHHHHHHHhhhh-hhccccccccccc-ccChHHHHH
Q psy10643 612 SLEELEAADDLLKREMDLVK------TGMGH---GDLS---LESFTQVWEECLSQV-LFLANQNRYTRAS-LASKKDRAD 677 (769)
Q Consensus 612 sde~L~~Ar~lI~~E~~~vk------~~~~~---~~~~---~e~~~~vw~~~~~~~-~ylp~~~~Y~~~s-~as~~drie 677 (769)
+.+..++|..+|..||...+ ..+.. ...+ ...+..-|+.+.+.- +--....+|.... ..+...-++
T Consensus 21 ~~~~~~~a~~lI~eE~~~~~~~~~~l~~lp~~~~~~~~~~~t~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~~d~~ 100 (221)
T PF05700_consen 21 TPEERQAAEALIEEEMRRYRPTKNYLPHLPPPPEPPFSAFETPLLQAELERVASGEPMQGLDMSRYELPPPPSGKSNDVE 100 (221)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCchhHHhCCCCCCCCcccccchhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCcccHH
Confidence 56779999999999999111 11111 1110 123344466655541 2233357786654 223334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10643 678 SLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGA 756 (769)
Q Consensus 678 sl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~~tF~~E~~AiprRle~L~eeV~~q~~REreLQ~rY~~ 756 (769)
+.+..++...-.+.-.+-+...|| |- .-+|.=+=+.....+.+....+.+-|..++.+|+.+...-+..|...+.
T Consensus 101 ~w~~al~na~a~lehq~~R~~NLe--Ll--~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~ 175 (221)
T PF05700_consen 101 AWKEALDNAYAQLEHQRLRLENLE--LL--SKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE 175 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 788888888887777777777766 22 1111100000002225556666777778888887777666666665543
No 62
>KOG1194|consensus
Probab=44.49 E-value=22 Score=41.13 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhcccc
Q psy10643 9 RWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWL 55 (769)
Q Consensus 9 kG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L 55 (769)
...||.||--+|-.+..-||. ++.+|-+.||.|+-.++..-|+.|-
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~LP~rsLaSlvqyYy~~K 232 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIRQALPHRSLASLVQYYYSWK 232 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHHHHccCccHHHHHHHHHHHH
Confidence 468999999999999999994 9999999999999999988887753
No 63
>KOG1878|consensus
Probab=41.00 E-value=9 Score=49.51 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=36.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhc
Q psy10643 8 KRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWF 52 (769)
Q Consensus 8 KkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~ 52 (769)
+...|+++|.+..+.=...|. ++...|+++|-.+|..+|..-|+
T Consensus 224 ~~n~Ws~~Ek~~fk~rf~~H~-knf~~~as~~erkSv~d~vlfyy 267 (1672)
T KOG1878|consen 224 RMNEWSPEEKELFKSRFAQHV-KNFGLIASFFERKSVSDCVLFYY 267 (1672)
T ss_pred HhhhccccccccccchhhhcC-cchhhhhhhhcccchhhceeeee
Confidence 446899999888777777776 58889999999999999988775
No 64
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=39.76 E-value=26 Score=31.13 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhC--------CC-----Ccccccc-C---CC--CCHHHHHHHHHHhhh
Q psy10643 63 EWSREEDEKLLHLAKLM--------PT-----QWRTIAP-I---IG--RTAAQCLERYEFLLD 106 (769)
Q Consensus 63 ~WT~EEDe~Ll~lvk~~--------G~-----~W~~IA~-l---~G--RT~~QCreRw~~lL~ 106 (769)
.||++.+..|++++... ++ .|..|+. | .| .|..||++||..+-.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 49999999999976421 11 3888887 4 33 688999999976644
No 65
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.27 E-value=98 Score=30.91 Aligned_cols=96 Identities=11% Similarity=0.235 Sum_probs=60.9
Q ss_pred hhhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccCc----cchhhhhcch
Q psy10643 654 QVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRP----ITYKADTSSI 729 (769)
Q Consensus 654 ~~~ylp~~~~Y~~~s~as~~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~----~tF~~E~~Ai 729 (769)
+.+|++.|..+...+ .+.+..+..++..++..+.........|+..|+ .+.. .-+-... ..+..|-..+
T Consensus 56 qkiY~~~Q~~~~~~s----~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~--~L~~-~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 56 QKIYFANQDELEVPS----PEELAELDAEIKELREELAELKKEVKSLEAELA--SLSS-EPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred eEEEeeCccccCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc-CCCHHHHHHHHHHHHHHHHHH
Confidence 478999888876432 455778888888888888888888888888888 2221 1111111 2336667777
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q psy10643 730 PRRIASLTE--------DVNRQKEREAVLQERFGA 756 (769)
Q Consensus 730 prRle~L~e--------eV~~q~~REreLQ~rY~~ 756 (769)
..||+.|+. |+..+...-..++..|+.
T Consensus 129 ~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 129 EEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777775 444444444444444443
No 66
>KOG4329|consensus
Probab=38.67 E-value=28 Score=39.40 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCchhHH-HHHhhhcChhhhhhhhccccC
Q psy10643 11 VIFVFQDEILKAAVMKYGKNQWSRI-ASLLHRKSAKQCKARWFEWLD 56 (769)
Q Consensus 11 ~WT~EEDe~L~~~V~kyG~~~W~~I-A~~Lp~Rs~~QCr~RW~~~L~ 56 (769)
.|+.+|-..+-..+..||. ++..| +..+++|+...|-.-|+-|..
T Consensus 279 ~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVeyYYlWKk 324 (445)
T KOG4329|consen 279 GWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEYYYLWKK 324 (445)
T ss_pred cCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHHHHHhhc
Confidence 6999999999999999995 88777 567889999999998887754
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.61 E-value=1.9e+02 Score=31.14 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccCc-cchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q psy10643 673 KDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRP-ITYKADTSSIPRRIASLTEDVNRQKEREAVLQ 751 (769)
Q Consensus 673 ~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~-~tF~~E~~AiprRle~L~eeV~~q~~REreLQ 751 (769)
+..++.++...-.+...+.+.-+|-++.|.||+ ..+- ... ..+..|...+.+|+.+|..++..+..+...|+
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~--~v~~-----~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLS--AVKD-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666667777788877 1100 000 22277888888999999999998888888888
Q ss_pred HHHHHHHHHHHH
Q psy10643 752 ERFGALDAQLKQ 763 (769)
Q Consensus 752 ~rY~~L~~e~~~ 763 (769)
..-..|...+..
T Consensus 124 ~~i~~l~~~~~~ 135 (239)
T COG1579 124 KEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
No 68
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=36.33 E-value=24 Score=34.56 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCC-CCccccccCCCCCHHHHHHHHHHhhhHHhhhc
Q psy10643 67 EEDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFLLDQAQKKE 112 (769)
Q Consensus 67 EEDe~Ll~lvk~~G-~~W~~IA~l~GRT~~QCreRw~~lL~p~ikk~ 112 (769)
+-|.+|+.+....| ..|+.||+..|-|...|+.|+..+.+..+-++
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 56889999888888 69999999999999999999999998876653
No 69
>PRK09343 prefoldin subunit beta; Provisional
Probab=35.81 E-value=2.7e+02 Score=26.67 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-cCCcCcccccC-c-------cch----hhhh-cchHHHHHHHHHHH
Q psy10643 675 RADSLAKRLEQNRKHMSLEAKKATKMENKRELN-CFSPGRESTPR-P-------ITY----KADT-SSIPRRIASLTEDV 740 (769)
Q Consensus 675 riesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~-vllGGYQ~Ra~-~-------~tF----~~E~-~AiprRle~L~eeV 740 (769)
.+......|..++..+.........+|--+..+ ..+.-...... + ..| ..|. .-+..|++.+..++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666555555555444400 00111111111 1 334 2222 34679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10643 741 NRQKEREAVLQERFGALDAQLKQLELG 767 (769)
Q Consensus 741 ~~q~~REreLQ~rY~~L~~e~~~l~~~ 767 (769)
..+...+..+++.+.++...+.++..+
T Consensus 88 k~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887543
No 70
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.60 E-value=1.6e+02 Score=34.59 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccC----------c---cchhhhhcchHHHHHHHHH
Q psy10643 672 KKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPR----------P---ITYKADTSSIPRRIASLTE 738 (769)
Q Consensus 672 ~~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~----------~---~tF~~E~~AiprRle~L~e 738 (769)
..+++..++.+++.+++.+.....+.+-++..++ ++.++..... . .....=...+..++..|..
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAK---FLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLT 145 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777777777777777667777777776 4444442110 0 1112223345677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10643 739 DVNRQKEREAVLQERFGALDAQLKQLEL 766 (769)
Q Consensus 739 eV~~q~~REreLQ~rY~~L~~e~~~l~~ 766 (769)
+...+.+..++++++...|..++..|..
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 146 EDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8899999999999999999999988754
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.28 E-value=1.8e+02 Score=30.23 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccCc-------cch---hhhhcchHHHHHHHHHHHH
Q psy10643 672 KKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRP-------ITY---KADTSSIPRRIASLTEDVN 741 (769)
Q Consensus 672 ~~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~-------~tF---~~E~~AiprRle~L~eeV~ 741 (769)
-++.|+.+.+..+.+...|...+..-.+|-..|. +++... ..| ..-...+-.|+..+..++.
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~--------~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK--------KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777667776667666655444444443 111111 134 3334456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy10643 742 RQKEREAVLQERFGALDAQLKQLE 765 (769)
Q Consensus 742 ~q~~REreLQ~rY~~L~~e~~~l~ 765 (769)
.+.---..|..+|..+..|+++|.
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988999999999999999885
No 72
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=1e+02 Score=29.80 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10643 730 PRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLEL 766 (769)
Q Consensus 730 prRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~~ 766 (769)
..|++.|.-.|..+.+-|+.+|++|.+|..++..+..
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999887644
No 73
>KOG2656|consensus
Probab=32.25 E-value=17 Score=41.33 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHH-----hhh-cChhhhhhhhcccc
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASL-----LHR-KSAKQCKARWFEWL 55 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~-----Lp~-Rs~~QCr~RW~~~L 55 (769)
+....||.+|-+-|..++.+|.. .|--|+.. ++. ||....++||+.+.
T Consensus 128 l~dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 128 LNDNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred hccccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 55678999999999999999996 78888776 554 99999999998764
No 74
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.76 E-value=26 Score=34.85 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCC-CCccccccCCCCCHHHHHHHHHHhhhHHhhhc
Q psy10643 66 REEDEKLLHLAKLMP-TQWRTIAPIIGRTAAQCLERYEFLLDQAQKKE 112 (769)
Q Consensus 66 ~EEDe~Ll~lvk~~G-~~W~~IA~l~GRT~~QCreRw~~lL~p~ikk~ 112 (769)
.+-|.+|+.+....| ..|+.||+..|=|...|+.|+..+.+..+-++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 456888998888887 69999999999999999999999998887553
No 75
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=31.65 E-value=45 Score=32.71 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCC
Q psy10643 14 VFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSI 59 (769)
Q Consensus 14 ~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~i 59 (769)
.+-|..|+.+..+.|.-.|..||..++ -|...|+.||.+..+.++
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg-lS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG-VSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCC
Confidence 457888999999999889999999998 999999999998766553
No 76
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=30.59 E-value=59 Score=41.75 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHh
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLL 39 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~L 39 (769)
-++..||.+||.-|+-.+.+||.++|..|-..+
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i 956 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAF 956 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356679999999999999999999999996655
No 77
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=30.06 E-value=46 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCccccccCCCCCHHHHHHHHHHhhh
Q psy10643 66 REEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLD 106 (769)
Q Consensus 66 ~EEDe~Ll~lvk~~G~~W~~IA~l~GRT~~QCreRw~~lL~ 106 (769)
++.+..++.++-..|-.|.+||...|.|...++.+...-+.
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEILGISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 35667788888888999999999999999999998876543
No 78
>KOG4468|consensus
Probab=29.75 E-value=39 Score=40.39 Aligned_cols=48 Identities=10% Similarity=0.238 Sum_probs=37.3
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCchhHHHH----------HhhhcChhhhhhhhcccc
Q psy10643 7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIAS----------LLHRKSAKQCKARWFEWL 55 (769)
Q Consensus 7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~----------~Lp~Rs~~QCr~RW~~~L 55 (769)
.++..||..|.+.+..++..+| .++..|-. ...-+|..|++.+|++.+
T Consensus 86 ~~ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 86 WAKTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 3456899999999999999999 48888722 223467788999988754
No 79
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.14 E-value=3.6e+02 Score=29.02 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10643 728 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLELG 767 (769)
Q Consensus 728 AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~~~ 767 (769)
+...||++|+-|..++.+.=+.|-..|..|....++|..+
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 5567777777777777776666666666676666666443
No 80
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.47 E-value=3.3e+02 Score=25.06 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10643 728 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 765 (769)
Q Consensus 728 AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~ 765 (769)
.+..|++.+..++..+......++....++..++.+++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999988874
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.15 E-value=3.1e+02 Score=26.55 Aligned_cols=39 Identities=15% Similarity=0.385 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10643 728 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLEL 766 (769)
Q Consensus 728 AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~~ 766 (769)
+...++..|+.++..+..|...+=+.|++-.++.++|++
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 345578888888888888888888888888888887764
No 82
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.66 E-value=3.6e+02 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10643 727 SSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 765 (769)
Q Consensus 727 ~AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~ 765 (769)
..+..+++.+..++..+......++..+.++...+..+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999999988764
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.57 E-value=4.9e+02 Score=25.72 Aligned_cols=65 Identities=17% Similarity=0.346 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10643 674 DRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQER 753 (769)
Q Consensus 674 driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~~tF~~E~~AiprRle~L~eeV~~q~~REreLQ~r 753 (769)
.++..++..++.+...|...-.+..-.++... .+| ++.|||.-|.+++..-..+=+++...
T Consensus 42 ~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~-----------------~~E--~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 42 KKNQQLEEELDKLEEQLKEAKEKLEESEKRKS-----------------NAE--QLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------hHH--HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666555555555555555 444 66677777777777666665555555
Q ss_pred HHHH
Q psy10643 754 FGAL 757 (769)
Q Consensus 754 Y~~L 757 (769)
.++.
T Consensus 103 l~e~ 106 (143)
T PF12718_consen 103 LREA 106 (143)
T ss_pred HHHH
Confidence 5544
No 84
>KOG1999|consensus
Probab=27.47 E-value=1.2e+02 Score=38.37 Aligned_cols=32 Identities=44% Similarity=0.501 Sum_probs=19.9
Q ss_pred CCCCCCC-C----CCCCCCCCCCCCCCC------Ccc-ccCCCC
Q psy10643 371 LNTPLLA-P----DFSGVTPSKDHLATP------NTV-LTTPFS 402 (769)
Q Consensus 371 ~n~~l~~-~----~~~g~~p~~~~~~tp------n~~-~~tp~~ 402 (769)
-|||||. + ..+|.||.+....|| |+. -.||-+
T Consensus 772 s~tpl~~~s~tp~~~~~~Tp~~dG~rTP~r~~aW~~~~~~tPa~ 815 (1024)
T KOG1999|consen 772 SNTPLWGGSRTPARDGGATPSHDGSRTPARGRAWNPYNGKTPAR 815 (1024)
T ss_pred CCCCCCCcccCccccCCCCcCCCCCcCCCCCCCcCCCCCCCCcc
Confidence 4555554 1 257888888888888 333 137777
No 85
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=26.33 E-value=54 Score=32.56 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCC
Q psy10643 14 VFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSI 59 (769)
Q Consensus 14 ~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~i 59 (769)
.+-|..|+.+..+.|.-.|..||..++ =|...|+.||.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg-lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG-LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCC
Confidence 456888888999998889999999998 999999999998766654
No 86
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.51 E-value=6.3e+02 Score=31.43 Aligned_cols=16 Identities=6% Similarity=0.239 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhcCCCC
Q psy10643 622 LLKREMDLVKTGMGHG 637 (769)
Q Consensus 622 lI~~E~~~vk~~~~~~ 637 (769)
-|..|++.+|..+.+.
T Consensus 422 rLE~dvkkLraeLq~~ 437 (697)
T PF09726_consen 422 RLEADVKKLRAELQSS 437 (697)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4566666666555544
No 87
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=24.42 E-value=82 Score=28.00 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCC-------CchhHHHHHhhhcC-----hhhhhhhhcccc
Q psy10643 18 EILKAAVMKYGK-------NQWSRIASLLHRKS-----AKQCKARWFEWL 55 (769)
Q Consensus 18 e~L~~~V~kyG~-------~~W~~IA~~Lp~Rs-----~~QCr~RW~~~L 55 (769)
-.|..+|.++|. +.|..||..|+--+ +.+++..|.++|
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L 88 (92)
T PF01388_consen 39 YKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYL 88 (92)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Confidence 357788888774 47999999997322 345666666665
No 88
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=24.16 E-value=78 Score=33.70 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHHHHHh
Q psy10643 555 SELQKAEELIKQEMITMLHY 574 (769)
Q Consensus 555 ~dl~~Ae~lI~~Em~~LL~~ 574 (769)
.+|..|.+||..||..|...
T Consensus 198 e~l~~A~~li~~E~~~~~~~ 217 (231)
T PF11831_consen 198 EDLAEARELIQAEMEVVKGG 217 (231)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 56778999999999998744
No 89
>KOG4167|consensus
Probab=24.09 E-value=60 Score=39.81 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCcccccc-CCCCCHHHHHHHHHH
Q psy10643 62 TEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEF 103 (769)
Q Consensus 62 g~WT~EEDe~Ll~lvk~~G~~W~~IA~-l~GRT~~QCreRw~~ 103 (769)
..||+.|-.+.-.++-.|..++-.|++ ++++|-.||-+-|+.
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHH
Confidence 469999999999999999999999999 899999999998865
No 90
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=24.09 E-value=34 Score=29.15 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=20.4
Q ss_pred chhHHHHHhhh-cChhhhhhhhccc
Q psy10643 31 QWSRIASLLHR-KSAKQCKARWFEW 54 (769)
Q Consensus 31 ~W~~IA~~Lp~-Rs~~QCr~RW~~~ 54 (769)
.|..||..|+. -+..+|+.||.+.
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~L 52 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNL 52 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHH
Confidence 69999999983 5788999999874
No 91
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.82 E-value=2.8e+02 Score=25.83 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10643 728 SIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 764 (769)
Q Consensus 728 AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l 764 (769)
-+.+|++.|...+..+...-..++..+..+....+.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999998887765
No 92
>KOG0933|consensus
Probab=23.47 E-value=1e+03 Score=31.06 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=60.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCcCcccccCccchhhhhcchHHHHHHHHHHHHHHH-----
Q psy10643 670 ASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQK----- 744 (769)
Q Consensus 670 as~~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~~tF~~E~~AiprRle~L~eeV~~q~----- 744 (769)
.+-++++..++..|...+..+.....+-.-+.+-|+ ..- +...+|..|-..--+++..++++|+.+.
T Consensus 395 ~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk--~~e------~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~ 466 (1174)
T KOG0933|consen 395 KTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELK--LRE------GELATASAEYVKDIEELDALQNEVEKLKKRLQS 466 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh------hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888888888888888888888888887 221 1224554445555566666666666544
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHhhc
Q psy10643 745 ------------EREAVLQERFGALDAQLKQLEL 766 (769)
Q Consensus 745 ------------~REreLQ~rY~~L~~e~~~l~~ 766 (769)
+|...|-+.|..|.++.+.|.+
T Consensus 467 l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 467 LGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666677778888888887754
No 93
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=23.17 E-value=49 Score=28.68 Aligned_cols=44 Identities=39% Similarity=0.760 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCC-------CCCCCCHHHHHHH
Q psy10643 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSI-------KKTEWSREEDEKL 72 (769)
Q Consensus 17 De~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~i-------kkg~WT~EEDe~L 72 (769)
+.+|..+|..|| |...+..+.-| |. .-+|++ ++++|..+.-+.|
T Consensus 12 e~il~~Lv~~yG---W~~L~~~i~i~----CF-----~~~PsikSSLkFLRkTpWAR~KVE~l 62 (64)
T PF09905_consen 12 ETILTELVEHYG---WEELGERININ----CF-----KNNPSIKSSLKFLRKTPWAREKVENL 62 (64)
T ss_dssp HHHHHHHHHHT----HHHHHHHTTSS----ST-----TSS--HHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccc----cC-----CCCCchHHHHHHHhcCHhHHHHHHHh
Confidence 568999999999 99999988733 21 124443 4788988776654
No 94
>PRK09039 hypothetical protein; Validated
Probab=22.59 E-value=5.4e+02 Score=28.99 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=36.9
Q ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10643 723 KADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 765 (769)
Q Consensus 723 ~~E~~AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l~ 765 (769)
.+|..|+.+.|.+|..+++..+++.+++|.++..|..+++.+.
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688888999999999999999999999999988887664
No 95
>KOG0018|consensus
Probab=22.41 E-value=9.4e+02 Score=31.42 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC----CCCCChhHHHHHHHH-Hhhhhhhcccccccccc--c-ccChHHHHHHHHHHHHH
Q psy10643 614 EELEAADDLLKREMDLVKTGMG----HGDLSLESFTQVWEE-CLSQVLFLANQNRYTRA--S-LASKKDRADSLAKRLEQ 685 (769)
Q Consensus 614 e~L~~Ar~lI~~E~~~vk~~~~----~~~~~~e~~~~vw~~-~~~~~~ylp~~~~Y~~~--s-~as~~driesl~~~fe~ 685 (769)
.++..++.+...|+....+.-+ -.+.....|....++ |....--|-..++-.+. . +-....+...++.++..
T Consensus 334 ~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~ 413 (1141)
T KOG0018|consen 334 KAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQ 413 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677888999999887655222 222234455554433 22111111112222222 1 11112445566777777
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCCcCcccccCccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10643 686 NRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL 764 (769)
Q Consensus 686 ~r~~m~~~AkkaaKlEKKL~~~vllGGYQ~Ra~~~tF~~E~~AiprRle~L~eeV~~q~~REreLQ~rY~~L~~e~~~l 764 (769)
....+....++-++|.-+++ +...+..-+..++..|+.+|.-....+.+++........++-.+
T Consensus 414 l~~sver~~~~~~~L~~~i~---------------s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 414 LKESVERLDKRRNKLAAKIT---------------SLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 77777777777777777777 33444455667888888888888888888888888777776554
No 96
>KOG2009|consensus
Probab=20.65 E-value=1.2e+02 Score=36.50 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCcccccc-CCCCCHHHHHHHHHH
Q psy10643 60 KKTEWSREEDEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLERYEF 103 (769)
Q Consensus 60 kkg~WT~EEDe~Ll~lvk~~G~~W~~IA~-l~GRT~~QCreRw~~ 103 (769)
..+.|+.+|-++.......+|.+.+.|+. +++|+.+|++..|..
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 35779999999999999999999999999 899999999998854
Done!