RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10643
(769 letters)
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell
cycle, DNA binding, spliceosome, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 108 bits (272), Expect = 6e-29
Identities = 48/61 (78%), Positives = 53/61 (86%)
Query: 56 DPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGE 115
S KKTEWSREE+EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE YEFLLD+A +++ G
Sbjct: 4 GSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDSGP 63
Query: 116 D 116
Sbjct: 64 S 64
Score = 46.0 bits (109), Expect = 7e-07
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTE 63
+E L QW IA ++ R +A QC + LD + ++
Sbjct: 17 EEKLLHLAKLMP-TQWRTIAPIIGR-TAAQCLEHYEFLLDKAAQRDS 61
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell
cycle, DNA binding, spliceosome, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 98.1 bits (245), Expect = 4e-25
Identities = 48/52 (92%), Positives = 49/52 (94%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREE 68
DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW+EWLDPSIKKTEWS
Sbjct: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68
Score = 54.6 bits (132), Expect = 7e-10
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 57 PSIKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERYEFLLDQAQKKEE 113
S K W EDE L K QW IA ++ ++A QC R+ LD + KK E
Sbjct: 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTE 63
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus
musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Length = 159
Score = 98.1 bits (245), Expect = 4e-24
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHL- 75
DE LK V + G + W IA+ L ++ QC+ RW + L+P + K W++EED++++ L
Sbjct: 14 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLV 73
Query: 76 AKLMPTQWRTIAPII-GRTAAQCLERYEFLLDQAQKKEE 113
K P +W IA + GR QC ER+ L+ KK
Sbjct: 74 QKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 112
Score = 93.5 bits (233), Expect = 2e-22
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 76
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 66 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125
Query: 77 KLMPTQWRTIAPII-GRTAAQCLERY 101
K + +W IA ++ GRT +
Sbjct: 126 KRLGNRWAEIAKLLPGRTDNAIKNHW 151
Score = 51.1 bits (123), Expect = 1e-07
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 59 IKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERYEFLLDQAQKK 111
+ KT W+REEDEKL L + W+ IA + RT QC R++ +L+ K
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIK 58
Score = 43.0 bits (102), Expect = 6e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSI 59
D I+ A + G N+W+ IA LL ++ K W + +
Sbjct: 118 DRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR
{Trichomonas vaginalis} PDB: 2kdz_A
Length = 107
Score = 90.3 bits (225), Expect = 7e-22
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 76
D L+ VM+YG W RI+ L+ ++ +QC+ RW +++P+++ WS EED L
Sbjct: 9 DLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKY 68
Query: 77 KLMPTQWRTIAPII-GRTAAQCLERYEFLLDQAQKKEE 113
+W I+ + R+ R+ + K ++
Sbjct: 69 AEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106
Score = 45.6 bits (109), Expect = 3e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 61 KTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERY 101
K +++ EED KL L + W I+ ++ R QC ER+
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERW 43
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding
PR transcription factor; 2.00A {Trichomonas vaginalis}
PDB: 3osf_A
Length = 126
Score = 86.6 bits (215), Expect = 2e-20
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 76
DE+LK AV ++G + W IA+ ++A+QC+ RW +L PSI T W+ EED L+
Sbjct: 19 DEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKI 77
Query: 77 KLMPTQWRTIAPII-GRT 93
+ QW IA GRT
Sbjct: 78 QEYGRQWAIIAKFFPGRT 95
Score = 50.0 bits (120), Expect = 1e-07
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 57 PSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPII-GRTAAQCLERY 101
+ KK +++ EEDE L + W+ IA R A QC +R+
Sbjct: 7 KAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW 52
Score = 35.3 bits (82), Expect = 0.015
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLH 74
D +L + +YG QW+ IA ++ K RW +I + + L H
Sbjct: 70 DALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWV-----TISNKLGIPQTQQMLEH 121
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A
{Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Length = 128
Score = 83.4 bits (207), Expect = 3e-19
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 76
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 35 DQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 94
Query: 77 KLMPTQWRTIAPII-GRT 93
K + +W IA ++ GRT
Sbjct: 95 KRLGNRWAEIAKLLPGRT 112
Score = 72.2 bits (178), Expect = 2e-15
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 35 IASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GR 92
+ +++ ++ QC+ RW + L+P + K W++EED++++ K P +W IA + GR
Sbjct: 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGR 60
Query: 93 TAAQCLERY 101
QC ER+
Sbjct: 61 IGKQCRERW 69
Score = 33.3 bits (77), Expect = 0.092
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW 51
D I+ A + G N+W+ IA LL ++ K W
Sbjct: 87 DRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHW 120
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding,
ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3
PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Length = 105
Score = 79.9 bits (198), Expect = 3e-18
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 76
D+ + V KYG +WS IA L + KQC+ RW L+P +KKT W+ EED +
Sbjct: 12 DQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 71
Query: 77 KLMPTQWRTIAPII-GRT 93
K + +W IA ++ GRT
Sbjct: 72 KRLGNRWAEIAKLLPGRT 89
Score = 40.2 bits (95), Expect = 2e-04
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 59 IKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLER 100
+ K W++EED++++ L K P +W IA + GR QC ER
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRER 45
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus;
2.90A {Trichomonas vaginalis}
Length = 131
Score = 80.8 bits (200), Expect = 3e-18
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLA 76
D++++ V + G W RI S L +S KQC+ RWF LDP++ K W+ EEDE +
Sbjct: 10 DDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNY 69
Query: 77 KLMPTQWRTIAPII-GRT 93
+ ++W IA +I GRT
Sbjct: 70 LKLGSKWSVIAKLIPGRT 87
Score = 37.7 bits (88), Expect = 0.003
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 61 KTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLER 100
K ++ ED+ + + P W I + R+ QC ER
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRER 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 3e-12
Identities = 109/630 (17%), Positives = 178/630 (28%), Gaps = 213/630 (33%)
Query: 232 ERLRQQHL------------DGELRSEKE--ER-----ERKKDKQKLKQRKENDIPTAML 272
+L++Q D E + E + + K+ Q + + L
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ--VLNLCL 88
Query: 273 QNLEPEKKRSK----LVLPEPQISDMELEQVVKLGRATEVAREVAIESGSGPTSDALLTD 328
E L Q +D L + +L + AR +A ++ AL
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 329 --------YSI--GTGAAM-------KTPRTPAPQTDRILQEAQNMM---ALTHVDTP-- 366
+I G G +T +++ + + T +D
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 367 LKGGLNTP--LLAPDFSGVTPSKDHLAT-----PNTVLTTPFSQRSVHDGGPGSTPGGF- 418
GLN L P TP KD+L + P + + V G TPG
Sbjct: 209 FTQGLNILEWLENPS---NTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELR 264
Query: 419 -STPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRA----GL-- 471
G + T + + D+ +F + + G+
Sbjct: 265 SYLKGA--TGHSQGLVTAV------------AIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 472 ------SSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMR 525
+SLP P ++ ++ E E ML +I+ + +E
Sbjct: 311 YEAYPNTSLP-PS-----ILEDSLENNEGVPS--PML---------SISNLT--QEQ--- 348
Query: 526 LRSQVIQKN--LPRPFDINIVLR--PSN---SDPPLSELQKAEELIKQEMITMLHYDALE 578
++ V + N LP + I L N S PP S L+ L
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS----------------LY--GLN 390
Query: 579 TPLSVDKKAAK----QSNILTDEE----HYNFLK-----HRPYRNFSLEELEAADDLLKR 625
L K A QS I E FL H L A DL+ +
Sbjct: 391 LTL--RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-------LVPASDLINK 441
Query: 626 EMDLVKTGM--GHGDLSLESF-TQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKR 682
DLVK + D+ + + T + L R S+ ++ +
Sbjct: 442 --DLVKNNVSFNAKDIQIPVYDTFDGSD-L----------RVLSGSI------SERIVDC 482
Query: 683 LEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNR 742
+ + + T+ + L F PG S + LT +R
Sbjct: 483 IIRLPVKW----ETTTQFKATHIL-DFGPGGAS----------------GLGVLT---HR 518
Query: 743 QKEREAVLQERF---GALDAQ------LKQ 763
K+ V R G LD KQ
Sbjct: 519 NKDGTGV---RVIVAGTLDINPDDDYGFKQ 545
Score = 49.3 bits (117), Expect = 5e-06
Identities = 40/190 (21%), Positives = 61/190 (32%), Gaps = 45/190 (23%)
Query: 572 LHYDALETPLSVDKK---AAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMD 628
L + +LE L V A Q L ++ F K P E AADD +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQ---LQEQ----FNKILPE---PTEGF-AADDEPTTPAE 59
Query: 629 LVKTGMGH-GDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRAD--SLAKRLEQ 685
LV +G+ L S +++ L+ L + L D +LA +L Q
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCL-----TEFENCYLEGN----DIHALAAKLLQ 110
Query: 686 NRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKE 745
T ++ K + + R RP K S +L V
Sbjct: 111 E--------NDTTLVKTKELIKNYITARIMAKRPFD-KKSNS-------ALFRAVGEGNA 154
Query: 746 REAVLQERFG 755
+ + FG
Sbjct: 155 QLVAI---FG 161
Score = 42.3 bits (99), Expect = 7e-04
Identities = 46/257 (17%), Positives = 78/257 (30%), Gaps = 98/257 (38%)
Query: 134 ETKPARPDPKDMDEDELE--------MLS---------EARARLANTQGKKAKRKAREKQ 176
E P P + ED LE MLS + N+ KQ
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL------PAGKQ 365
Query: 177 LEEA----RR----------LAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKR-- 220
+E + + L L LR + K G+D + IPF +R
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLN--LTLR--------KAKAPSGLD-QSRIPFSERKL 414
Query: 221 -------P--APGF---YDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIP 268
P +P F + + + + + ++ ++ IP
Sbjct: 415 KFSNRFLPVASP-FHSHLLVPASDLINKDLVKNNVSFNAKD---------IQ------IP 458
Query: 269 ---T---AMLQNLEPEKKRSKLVLPEPQISDMEL--EQVVKLGRATEVAREVAIESGSGP 320
T + L+ L +V I + + E + +AT + ++ G G
Sbjct: 459 VYDTFDGSDLRVLSGSISER-IV---DCIIRLPVKWETTTQF-KATHI-----LDFGPGG 508
Query: 321 TSD-ALLTDYSI-GTGA 335
S +LT + GTG
Sbjct: 509 ASGLGVLTHRNKDGTGV 525
Score = 31.6 bits (71), Expect = 1.5
Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 49/166 (29%)
Query: 598 EHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQ----VWEECLS 653
E+Y+ + + L+ + ++ + G LS FTQ + E+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAF 1744
Query: 654 QVL---FLANQNR---------YTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKME 701
+ L L + Y A LAS AD MS+E+ ++
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYA-A-LAS---LADV-----------MSIES--LVEVV 1786
Query: 702 NKRELNCFSPGR---ESTPRPITYKADTSSI---PRRI-ASLTEDV 740
R G + PR +++ I P R+ AS +++
Sbjct: 1787 FYR-------GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription
regulation, DNA binding, ION bindi proto-oncogene,
nuclear protein, activator; 1.6A {Mus musculus} SCOP:
a.4.1.3 PDB: 1mbe_A 1mbf_A
Length = 52
Score = 57.6 bits (140), Expect = 5e-11
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDP 57
DE LK V + G + W IA+ L ++ QC+ RW + L+P
Sbjct: 11 DEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
Score = 52.2 bits (126), Expect = 3e-09
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 59 IKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERY 101
+ KT W+REEDEKL L + W+ IA + RT QC R+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics,
unknown function, NPPSFA; NMR {Mus musculus}
Length = 60
Score = 57.6 bits (140), Expect = 5e-11
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWS 65
DE L+A V ++G+ W +AS ++ +QC+ RW L S
Sbjct: 16 DEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG-----PSS 59
Score = 52.2 bits (126), Expect = 4e-09
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 57 PSIKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERYEFLLD 106
S K +W+ EEDE+L L + W+ +A RT QC R+ +L
Sbjct: 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 9e-11
Identities = 106/679 (15%), Positives = 192/679 (28%), Gaps = 215/679 (31%)
Query: 53 EWLDPSIKKTEW-----SREEDEKLLHL-AKLMPTQWRTIAPIIGRTAAQCLERYEFLLD 106
+ + K E S++ L L L+ Q + + Y+FL+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMS 96
Query: 107 QAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGK 166
+ ++ P+ T M E R RL N
Sbjct: 97 PIKTEQ----------------RQPSMMT---------------RMYIEQRDRLYNDNQV 125
Query: 167 KAKRK-AREKQLEEARRLAALQKRRELRAAG----------------IEVAPRQKKKRGI 209
AK +R + + R+ AL ELR A ++V K + +
Sbjct: 126 FAKYNVSRLQPYLKLRQ--ALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 210 DYNAEIPFEKRPAPGFY-----DTSKEERLRQQ-----HLDGELRSEKEERER-KKDKQK 258
D+ F+ S E L +D S + K
Sbjct: 181 DFKI-----------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 259 LKQRKENDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREVAIESGS 318
++ + + LVL + + + L + +
Sbjct: 230 IQAELRRLL-------KSKPYENCLLVLLN--VQNAKAWNAFNLS-----CKILLT---- 271
Query: 319 GPTSDALLTDYSIGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAP 378
T +TD+ T I + + M LT + K LL
Sbjct: 272 --TRFKQVTDFLSAA------------TTTHISLD-HHSMTLTPDEV--KS-----LLL- 308
Query: 379 DFSGVTPSKDHLATPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIR- 437
+ P L P R V P + +S+R G
Sbjct: 309 KYLDCRPQD--L--P----------REVLTTNP------RRLSIIAESIRDG----LATW 344
Query: 438 ---DRLNINPEDNML------LEAGDTPAAFKS---FQ-----TEQLRAGLSSL--PLPK 478
+N + ++ LE + F F L LS + + K
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIK 401
Query: 479 NDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAI----ARMKAQREHEMRLRSQVIQK- 533
+D +VV ++ + + ++E Q +I +K + E+E L ++
Sbjct: 402 SDVMVVV---NKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 534 NLPRPFDINIVLRPSNSDPPLSE---------LQKAEELIKQEMITMLHYDA--LETPLS 582
N+P+ FD + P L + L+ E + + M+ D LE +
Sbjct: 454 NIPKTFDSD-----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 583 VDKKAAKQS----NILTDEEHYN--FLKHRPYRNFSLEELE-----AADDLLK-REMDLV 630
D A S N L + Y + P + + ++L+ + DL+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 631 KTGM--GHGDLSLESFTQV 647
+ + + E+ QV
Sbjct: 569 RIALMAEDEAIFEEAHKQV 587
Score = 51.8 bits (123), Expect = 8e-07
Identities = 87/617 (14%), Positives = 170/617 (27%), Gaps = 177/617 (28%)
Query: 236 QQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRS---KLVLPEPQ-- 290
H+D E + + + + DI L E + K V P+
Sbjct: 4 HHHMDFET-----------GEHQYQYK---DI----LSVFEDAFVDNFDCKDVQDMPKSI 45
Query: 291 ISDMELEQVVKLGRATEVAREVAIESGSGPTS-------DALLTDYSIGTGAAMKTPRTP 343
+S E++ ++ A + S + L +Y R P
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 344 APQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHL--ATPNTVLTTPF 401
+ T +++ + + D + N L P + L P +
Sbjct: 106 SMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQP----YLKLRQALLELRPAKNVL--- 154
Query: 402 SQRSVHDGGPGSTPGGFST---PGVRD--------------SVRGGATPTPIRDRLN--- 441
+ G GS G + +++ +P + + L
Sbjct: 155 ----ID-GVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 442 --INPEDNMLLEAGDTPAAFKSFQTEQLRAGLSSLPLPKNDYE---IVVPENEEMEEKAS 496
I+P + + ++A L L L YE +V+
Sbjct: 207 YQIDPNWTSRSDHSSNI----KLRIHSIQAELRRL-LKSKPYENCLLVL----------- 250
Query: 497 GDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVI----QKNLPRPFDINIVLRPS--NS 550
+++ +A L +++ K + S +
Sbjct: 251 ---LNVQNAKAWNA-------------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 551 DPPLSELQKAEELIK--QEMITMLHYDALET-PLSVDKKAAK-QSNILTDE--EHYNFLK 604
L+ + L+K L + L T P + A + + T + +H N K
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 605 HRPYRNFSLEELEAADDLLKREM--DL------VKTGMGHGDLSLESFTQVWEECLSQ-V 655
SL LE A+ R+M L + + +W + + V
Sbjct: 355 LTTIIESSLNVLEPAEY---RKMFDRLSVFPPSAH-------IPTILLSLIWFDVIKSDV 404
Query: 656 LFLANQNRYTRASLASKKDRADSLAKRLEQNRKH--MSLEAKKATKMENKRELN------ 707
+ + N+ L SL ++ + S+ + K+EN+ L+
Sbjct: 405 MVVVNK-------LHKY-----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 708 -----CFSPGRESTPRP-------ITYKADTSSIPRRIASLTE---DVN--RQK-EREAV 749
F P I + P R+ D QK ++
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 750 LQERFGALDAQLKQLEL 766
G++ L+QL+
Sbjct: 513 AWNASGSILNTLQQLKF 529
Score = 37.1 bits (85), Expect = 0.027
Identities = 50/350 (14%), Positives = 98/350 (28%), Gaps = 103/350 (29%)
Query: 6 ILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWS 65
+L +++ QD L V+ + S IA + A W W + K
Sbjct: 306 LLLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDG-----LATWDNWKHVNCDKLTTI 358
Query: 66 REEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYE--FLLDQAQKKEEGEDVADDPRK 123
E L L P ++R + ++ + P
Sbjct: 359 IESS-----LNVLEPAEYR--------------KMFDRLSVFP--------PSA-HIPTI 390
Query: 124 LKP---GEIDPNPETKPARPDPKDMDEDELEMLSE-ARARLANTQGKKAKRKAREKQLEE 179
L ++ D + ++++ + L Q K++ LE
Sbjct: 391 LLSLIWFDVIK---------------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 180 ARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGF------YDTSKEER 233
+ L+ L + ++ + D + IP + +
Sbjct: 436 KVK---LENEYALHRSIVD---HYNIPKTFDSDDLIP---PYLDQYFYSHIGH------- 479
Query: 234 LRQQHLDGELRSEKEERERKK--D----KQKLKQRKENDIPTAMLQNLEPEKKRSKLVLP 287
HL E+ R D +QK++ + + N +L
Sbjct: 480 ----HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-----LQQLKFY 530
Query: 288 EPQISDME--LEQVVK-LGRATEVAREVAIESGSGPTSD----ALLTDYS 330
+P I D + E++V + E I S +D AL+ +
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICS---KYTDLLRIALMAEDE 577
>1gvd_A MYB proto-oncogene protein; transcription, transcription
regulation, C-MYB, DNA binding, ION binding, nuclear
protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A
1mbg_A 1mbh_A
Length = 52
Score = 51.8 bits (125), Expect = 4e-09
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDP 57
D+ L V KYG +WS IA L + KQC+ RW L+P
Sbjct: 11 DQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 59 IKKTEWSREEDEKLLHL-AKLMPTQWRTIAPII-GRTAAQCLERY 101
+ K W++EED++L+ L K P +W IA + GR QC ER+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle,
SGC, structural genomics consortium, NESG, NOR
structural genomics consortium; NMR {Homo sapiens}
Length = 73
Score = 48.8 bits (116), Expect = 1e-07
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 39 LHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCL 98
+H + +++ EE EKL L W TI +GR+A+
Sbjct: 1 MHHHHHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVK 60
Query: 99 ERYEFLLDQ 107
+R + D
Sbjct: 61 DRCRLMKDT 69
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; SWI/SNF complex 155 kDa subunit,
BRG1-associated factor 155; NMR {Homo sapiens}
Length = 79
Score = 46.0 bits (109), Expect = 1e-06
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 55 LDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLERY 101
+ EW+ +E LL ++ W ++ +G RT +C+ +
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59
Score = 34.9 bits (80), Expect = 0.011
Identities = 5/38 (13%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 16 QDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFE 53
+ +L A+ Y + W++++ + ++ +C +
Sbjct: 25 ETLLLLEALEMYKDD-WNKVSEHVGSRTQDECILHFLR 61
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional
adaptor protein2, transcriptional activation, MYB
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 60
Score = 42.3 bits (100), Expect = 1e-05
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS 58
+ L AVM G W +A+ + K+ ++C+ + ++
Sbjct: 16 EMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57
Score = 42.0 bits (99), Expect = 2e-05
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 58 SIKKTEWSREEDEKLLHLAKLMPTQ-WRTIAPIIG-RTAAQCLERY 101
S W+ +E+ LL W+ +A + +T +C + Y
Sbjct: 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.3
Length = 73
Score = 40.6 bits (95), Expect = 8e-05
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 56 DPSIKKTEWSREEDEKLLH-LAKL---MPTQWRTIAPII-GRTAAQCLERYEFLLDQAQK 110
+ W++ + + L L + W IA + ++ C+ RY+ L+
Sbjct: 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPSS 72
Score = 36.4 bits (84), Expect = 0.003
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 16 QDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARW 51
Q ++L+ A+ +Y + + W +IA + KS + C AR+
Sbjct: 25 QQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens}
SCOP: a.4.1.4 PDB: 1ba5_A
Length = 53
Score = 39.6 bits (93), Expect = 9e-05
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 60 KKTEWSREEDEKLLHL-AKLMPTQWRTIA---PIIGRTAAQCLERY 101
K+ W EED+ L K W I RT+ +R+
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46
Score = 39.2 bits (92), Expect = 1e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 17 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARW 51
D+ L++ V KYG+ WS+I + +++ K RW
Sbjct: 10 DKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 39.0 bits (91), Expect = 2e-04
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 56 DPSIKKTEWSREEDEKLLH-LAKLMPTQWRTIAPIIG--RTAAQCLERY 101
S W +E+ L+ L W IA +G RT +C + Y
Sbjct: 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHY 52
Score = 35.1 bits (81), Expect = 0.005
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 17 DEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWFE 53
+ +L A G W+ IA + + ++ ++C+ + +
Sbjct: 17 ELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4
PDB: 1iv6_A
Length = 69
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 60 KKTEWSREEDEKLLHL-AKLMPTQWRTIA---PIIGRTAAQCLERYEFLLDQAQKKEEGE 115
K+ W EED+ L K W I RT+ +R+ + + E
Sbjct: 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68
Query: 116 D 116
D
Sbjct: 69 D 69
Score = 37.8 bits (88), Expect = 7e-04
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 17 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARW 51
D+ L++ V KYG+ WS+I + +++ K RW
Sbjct: 18 DKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 54
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding,
regulation of transcription, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Length = 72
Score = 39.0 bits (91), Expect = 3e-04
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 57 PSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLERYEFLLDQAQKKEEGE 115
S +W+ EE E +W I+ +IG RT Q K +
Sbjct: 5 SSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDK 64
Query: 116 DVAD 119
+ +
Sbjct: 65 ETPN 68
Score = 29.4 bits (66), Expect = 0.84
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW 51
E+ + + K+G+ W++I+ L+ ++ Q K+
Sbjct: 17 KELFEQGLAKFGRR-WTKISKLIGSRTVLQVKSYA 50
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere,
DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4
PDB: 1xg1_A 1vfc_A
Length = 64
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 60 KKTEWSREEDEKLLH-LAKLMPTQWRTIA---PIIGRTAAQCLERY 101
KK +W+ EE E + + K W I+ P + RTA +R+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
Score = 37.8 bits (88), Expect = 6e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 17 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARW 51
E +KA V KYG+ W+ I+ ++A K RW
Sbjct: 19 SEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle, nuclear protein; 1.8A
{Homo sapiens} SCOP: a.4.1.4
Length = 55
Score = 38.1 bits (89), Expect = 3e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 60 KKTEWSREEDEKLLH-LAKLMPTQWRTIA---PIIGRTAAQCLERY 101
KK +W+ EE E + + K W I+ P + RTA +R+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
Score = 38.1 bits (89), Expect = 4e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 17 DEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARW 51
E +KA V KYG+ W+ I+ ++A K RW
Sbjct: 10 SEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural
genomics consortium, NESG, north structural genomics
consortium; NMR {Homo sapiens}
Length = 89
Score = 39.2 bits (91), Expect = 3e-04
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW-----LDPSIKKTEWSREEDEK 71
K ++++G+N WS IA ++ K+ QCK +F + LD +++ + E++
Sbjct: 24 MGTAKKGLLEHGRN-WSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEKERN 82
Score = 36.1 bits (83), Expect = 0.005
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 57 PSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLERYEFLLDQAQKKEEGE 115
++ W+ EE W IA ++G +T +QC Y KK +
Sbjct: 12 ENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY-----FNYKKRQNL 66
Query: 116 DVADDPRKLKPGEIDPNPETK 136
D KLK + K
Sbjct: 67 DEILQQHKLKMEKERNARRKK 87
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription
FA DNA-binding, nuclear protein, floral asymmetry; 1.9A
{Antirrhinum majus} SCOP: a.4.1.3
Length = 93
Score = 38.3 bits (89), Expect = 8e-04
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 62 TEWSREEDEKLLHLA-----KLMPTQWRTIAPII-GRTAAQCLERYEFLLDQAQKKEEGE 115
WS +E+ K A K P +W +A + GRT + + YE L++ + E G+
Sbjct: 9 RPWSAKEN-KAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGK 67
Score = 31.0 bits (70), Expect = 0.35
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 16 QDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTE 63
+++ + A+ Y K ++W+ +A + ++ ++ K + +E L IK E
Sbjct: 15 ENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVK-KHYEILVEDIKYIE 64
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding
protein/DNA complex; HET: DNA; 2.25A {Saccharomyces
cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Length = 246
Score = 38.4 bits (88), Expect = 0.005
Identities = 38/244 (15%), Positives = 77/244 (31%), Gaps = 23/244 (9%)
Query: 57 PSIKKTEWSREEDEKLLHLAKLMPTQ------WRTIAPII-GRTAAQCLERYEFLLDQ-- 107
PS K ++ EEDE +L + + PT+ + I+ + T R+ L +
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63
Query: 108 ---AQKKEEGEDVADD-PRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANT 163
+ + G+ V DD +K + P+ + K + + + + ++
Sbjct: 64 EYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPD 123
Query: 164 QGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAP 223
G+ R + Q ++ I F +
Sbjct: 124 TGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEE-HA 182
Query: 224 GFYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRSK 283
+ + +R R+ L + E ++ +N P M +NL KR
Sbjct: 183 AHTENAWRDRFRKFLLAYGIDDYISYYEA--------EKAQNREPEPM-KNLTNRPKRPG 233
Query: 284 LVLP 287
+ P
Sbjct: 234 VPTP 237
Score = 32.3 bits (72), Expect = 0.53
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 17 DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLH 74
D + K + + I+ + + + R+ +L ++ + ++ KL+
Sbjct: 21 DVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVR 77
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 61
Score = 35.1 bits (81), Expect = 0.005
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 18 EILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTE 63
EI K +++ KN + IAS L RKS C ++ KK E
Sbjct: 21 EIFKDKFIQHPKN-FGLIASYLERKSVPDCVLYYYLT-----KKNE 60
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin,
fusion of virus membrane with membrane, membrane fusion,
sialic acid, virion; HET: NAG BMA; 2.70A {Artificial
gene}
Length = 74
Score = 34.5 bits (79), Expect = 0.011
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 53 EWLDPSIKKTEWSREEDEKLLHLA-----KLMPTQWRTIAPII-GRTAAQCLERYEFLL 105
W E+ +A K P +W+ +A + GRT + + YE
Sbjct: 12 HMASTRGSGRPWKFSEN-IAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYELEH 69
Score = 29.8 bits (67), Expect = 0.53
Identities = 5/39 (12%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 16 QDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARW 51
++ + A+ K ++W ++A + ++ ++ K +
Sbjct: 27 ENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET:
I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Length = 94
Score = 34.5 bits (79), Expect = 0.021
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 16 QDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTE 63
+ E + M++ KN + IAS L RK+ +C ++ KK E
Sbjct: 50 EKETFREKFMQHPKN-FGLIASFLERKTVAECVLYYYLT-----KKNE 91
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 53 EWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLERY 101
+ WS +E E P + IA + +T A+C+ Y
Sbjct: 35 KVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.3
Length = 72
Score = 33.1 bits (75), Expect = 0.038
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 58 SIKKTEWSREEDEKLLHLAKLMPT----QWRTIAPIIGRTAAQCLERYEFLLDQAQKK 111
S EW+ E+ +L P +W IA +GR+ + + L D
Sbjct: 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDSVTCS 62
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding
protein; NMR {Oryza sativa}
Length = 122
Score = 34.0 bits (77), Expect = 0.049
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 17 DEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWFEWLDPSIKKTEWSR 66
E+L AV G +W + +H ++ K +W + + + R
Sbjct: 39 VELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRR 92
Score = 30.1 bits (67), Expect = 1.1
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 60 KKTEWSREEDEKLLH-LAKLMPTQWRTI-----APIIGRTAAQCLERYEFLLDQAQKKEE 113
+ ++ E E L+ + L +WR + + RT ++++ L+ A +
Sbjct: 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89
Query: 114 GEDVADDPRKLK 125
A P++L
Sbjct: 90 QRRGAPVPQELL 101
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A
{Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Length = 83
Score = 32.3 bits (73), Expect = 0.076
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 17 DEILKAAVMKYGKNQWSRIA----SLLHRKSAKQCKARW 51
E L AV G +W + ++ K +W
Sbjct: 8 VEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKW 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.076
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 33/106 (31%)
Query: 163 TQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPA 222
TQ ++ RK RE+Q + + L A K E R+K K+ ++
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEW-------REKAKKDLE------------ 121
Query: 223 PGFYDTSKEERLRQQHLDGELRSEKEERE-RKKDKQKLKQRKENDI 267
+ + + + + EK + R DK +Q + I
Sbjct: 122 -EWN------QRQSEQV------EKNKINNRIADKAFYQQPDADII 154
Score = 34.4 bits (78), Expect = 0.082
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 33/109 (30%)
Query: 172 AREKQL-EEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSK 230
A+ +L +E +++K RE + ++ K
Sbjct: 75 AQADRLTQEPE---SIRKWREEQRKRLQELDAASKV-----------------------M 108
Query: 231 EERLRQQHLDGELRSEKEERERKKDKQKLKQRKEN-DIPTAMLQNLEPE 278
E+ R++ + + EE +++ +Q K + N A Q + +
Sbjct: 109 EQEWREKA-----KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 29.7 bits (66), Expect = 2.2
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 22/89 (24%)
Query: 109 QKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKD--MDEDELEMLSEARARL----AN 162
+ +E E + RK + E + R D E E +A+ L
Sbjct: 79 RLTQEPESI----RKWR--------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Query: 163 TQGKKAKRKAREKQLEEARRLAALQKRRE 191
+ K K + ++A Q+
Sbjct: 127 QSEQVEKNKINNRIADKAF----YQQPDA 151
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
a.4.1.3
Length = 105
Score = 32.7 bits (74), Expect = 0.092
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 17 DEILKAAVMKYGKNQWSRI----ASLLHRKSAKQCKARWFEWLDPSIKKTEWSR 66
E L AV K G +W + ++ K +W + + + R
Sbjct: 21 VEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRR 74
Score = 29.7 bits (66), Expect = 1.1
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 60 KKTEWSREEDEKLLH-LAKLMPTQWRTI-----APIIGRTAAQCLERYEFLLDQAQKKEE 113
+ +S E E L+ + KL +WR + RT ++++ L+ A+ +
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71
Query: 114 GEDVADDPRKLKP 126
P++L
Sbjct: 72 QRRGEPVPQELLN 84
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.1 bits (81), Expect = 0.11
Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 30/162 (18%)
Query: 147 EDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKR----------RELRAAG 196
+++ + ++ N + + + + E R++ + + E+
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Query: 197 IEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGELRSEKEERERKKDK 256
E+ Q +K+ I+ A+ + L++Q+ L++EKEE R+
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHET-------EQLVSELKEQNT--LLKTEKEELNRRIH- 1047
Query: 257 QKLKQRKENDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQ 298
+ K+ E M + L E K+ +L ++D L
Sbjct: 1048 DQAKEITE-----TMEKKLVEETKQLEL-----DLNDERLRY 1079
Score = 33.9 bits (78), Expect = 0.26
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 15/143 (10%)
Query: 155 EARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAE 214
R R + +A + + Q + I QK RG
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKY---QMMLREHKSIII----QKHVRGWLARVH 882
Query: 215 IPFEKRPAPGFYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQN 274
+ + R+ EL+ K E + +KL EN I + +
Sbjct: 883 YHRTLK-----AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI-MQLQRK 936
Query: 275 LEPEKKRSKLVLPEPQISDMELE 297
++ + K K + +++++E+
Sbjct: 937 IDEQNKEYKSL--LEKMNNLEIT 957
Score = 31.6 bits (72), Expect = 1.3
Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 31/197 (15%)
Query: 109 QKKEEGEDVADDPRKLKPGE----IDPNPETKPARPDPKDMDEDELEMLSEARARLANTQ 164
Q G V + + + I + AR + + + R +A +
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905
Query: 165 GKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPG 224
KK K +AR + + + K +L +++ + N E
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQL------------QRKIDEQNKEY--------- 944
Query: 225 FYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRSKL 284
K + +L+ +E E+ ++ +E T + +L+ E + +
Sbjct: 945 -----KSLLEKMNNLEITYSTETEKLR-SDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 285 VLPEPQISDMELEQVVK 301
L + Q +E+
Sbjct: 999 ELHQTQTEKKTIEEWAD 1015
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast
structural genomics consortiu PSI-biology, apoptosis;
NMR {Homo sapiens}
Length = 70
Score = 31.6 bits (71), Expect = 0.11
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 64 WSREEDEKLLHLAKLMPTQWRT---IAPIIGRTAAQCLERYEFLLDQAQKKE 112
W+R +D +L + +T +A + + Q ER++ L+ +K +
Sbjct: 17 WTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFEKSK 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 34.0 bits (76), Expect = 0.13
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 61 KTEWSREEDEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLE---RYEFLLDQAQKKEEGED 116
W+ EE + + ++ I+ +IG ++ Q Y + + +E E
Sbjct: 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEA 192
Query: 117 VADDPRKLKPGEIDPNPETKPARPDPKDMDE 147
P P + P++ DE
Sbjct: 193 EHGKEETNGPSNQKPVKSPDNSIKMPEEEDE 223
Score = 29.3 bits (64), Expect = 3.6
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 18 EILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW 54
+ A+ KYG++ + I+ ++ KS Q K + +
Sbjct: 142 LLAVQAIRKYGRD-FQAISDVIGNKSVVQVKNFFVNY 177
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3;
transcription, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 75
Score = 31.5 bits (71), Expect = 0.13
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 57 PSIKKTEWSREEDEKLLHLAKLMPTQ------WRTIAPIIG-RTAAQCLERYEFLLDQAQ 109
S W+ EE +KL L P + W+ IA +G RTA Q + + +
Sbjct: 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63
Query: 110 K 110
K
Sbjct: 64 K 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: a.4.1.3
Length = 73
Score = 31.4 bits (70), Expect = 0.14
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 55 LDPSIKKTEWSREEDEKL----LHLAKLMPTQWRTIAPIIG-RTAAQCLERY 101
S EW+ +E +KL L K P W +A +G R+ +C +Y
Sbjct: 2 SSGSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKY 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein;
NMR {Nicotiana glutinosa}
Length = 121
Score = 30.9 bits (69), Expect = 0.62
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 17 DEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWFEWLDPS 58
E L AV G +W + ++ K +W + +
Sbjct: 25 VEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA
binding domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
a.4.1.3
Length = 95
Score = 30.1 bits (67), Expect = 0.66
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 64 WSREEDEKLLHLAKLMPTQWRTIAPI----IGRTAAQCLERYEFLLDQAQKKEEG 114
W+RE D +L + + Q T + I +T + R+ L+ E
Sbjct: 36 WTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACES 90
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 31.9 bits (73), Expect = 0.86
Identities = 16/152 (10%), Positives = 40/152 (26%), Gaps = 12/152 (7%)
Query: 170 RKAREKQLEEARRLAALQK-------RRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPA 222
++A + + + ++Q ++ + + ++ KR
Sbjct: 777 KQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREP 836
Query: 223 PGFYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTA---MLQNLEPEK 279
+ L ++E + +Q+K + +L+ LE
Sbjct: 837 FVAPAGLTPNEIDSTWS--ALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 894
Query: 280 KRSKLVLPEPQISDMELEQVVKLGRATEVARE 311
+ L + D KL E
Sbjct: 895 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 926
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone
inhibitor binding, methylation, nucleosome core,
oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB:
2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Length = 482
Score = 31.4 bits (69), Expect = 1.2
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 18 EILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEW-----LDPSIKKTEWSREEDEK 71
+ A+ KYG++ + I+ ++ KS Q K + + +D +++ E ++E
Sbjct: 389 LLAVQAIRKYGRD-FQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEET 446
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 693 EAKKATKMENKRELNCFSPGRESTPRPITYKA 724
E + K++ L ++ +S P + KA
Sbjct: 18 EKQALKKLQAS--LKLYAD--DSAP-ALAIKA 44
Score = 28.4 bits (62), Expect = 6.5
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 12/32 (37%)
Query: 107 QAQKKEEGEDVADDPRKLKPGEIDPNPETKPA 138
QA KK + LK ++ PA
Sbjct: 20 QALKKLQA--------SLKLYA----DDSAPA 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.3 bits (71), Expect = 1.5
Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 24/156 (15%)
Query: 147 EDELEMLSEARARLANTQGKKAKRKAREKQL-----EEARRLAALQ-KRRELRAAGIEVA 200
+ E E+ +EA KK + + ++ EE R LQ ++++++ +++
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL- 960
Query: 201 PRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGELRSEK------------- 247
++ + ++ EK A G +++ L + + +L E+
Sbjct: 961 -EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Query: 248 --EERERKKDKQKLKQRKENDIPTAMLQNLEPEKKR 281
EE E+ K+ KLK + E+ I + + L+ E+K
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMI-SELEVRLKKEEKS 1054
Score = 30.2 bits (68), Expect = 3.3
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 147 EDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKK 206
D L+E + N K K ++ +LE RL +K R+ +E R+ +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEV--RLKKEEKSRQE----LEKIKRKLEG 1067
Query: 207 RGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKEND 266
D + +I + + +L ++ + + + E E + LK+ +E +
Sbjct: 1068 ESSDLHEQIAELQAQI-----AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122
Query: 267 IPTAMLQN-LEPEKK-RSKLVLPEPQISDMELE 297
+ LQ LE EK R+K E Q D+ E
Sbjct: 1123 SHISDLQEDLESEKAARNKA---EKQKRDLSEE 1152
>2oug_A Transcriptional activator RFAH; transcription factor, virulence,
transcription pausing, transcription elongation; 2.10A
{Escherichia coli}
Length = 162
Score = 29.8 bits (68), Expect = 1.9
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 419 STPGVRDSVRGGATPTPIRD--------RLNINPEDNMLLEAGDT 455
+T GV VR GA+P + + D GD
Sbjct: 71 ATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDK 115
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation;
HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Length = 86
Score = 28.2 bits (63), Expect = 2.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 21 KAAVMKYGKNQWSRIASLLHRK----SAKQCKARW 51
K K+ W +I+S + K S C +W
Sbjct: 25 LFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKW 59
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 30.1 bits (67), Expect = 3.2
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
Query: 112 EEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGK---KA 168
+ G ++A + +D +L A++ + A
Sbjct: 847 KNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAA 906
Query: 169 KRKAREKQLEEARRLAALQKRR-ELRAAGIEVAPRQKKKR 207
+ +A EK E RL AL+ +R + +++
Sbjct: 907 RNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQV 946
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 29.1 bits (65), Expect = 5.6
Identities = 12/109 (11%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 657 FLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGREST 716
FL+ L S +D + + + ++ + E+ + + +S
Sbjct: 28 FLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKS- 86
Query: 717 PRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLE 765
+ I + LQE + + + ++ L+
Sbjct: 87 ----------RKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLK 125
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 29.2 bits (66), Expect = 6.0
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 28/162 (17%)
Query: 166 KKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGF 225
K +++ K A +A + R L A + P K + G N + R
Sbjct: 109 KLVRQQEIAKNRARAEDVA---EERILDA----LLPPAKNQWGEVENHDSHSSTR----- 156
Query: 226 YDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLE--------P 277
+ R++ +G+L ++ E + + M L+
Sbjct: 157 ------QAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSD 210
Query: 278 EKKRSKLVLPE--PQISDMELEQVVKLGRATEVAREVAIESG 317
+ K+ K+ + + + D E +++ + A + ++G
Sbjct: 211 KTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNG 252
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 29.2 bits (66), Expect = 6.3
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 159 RLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAA 195
+L +A++KA EK + A L + +R +
Sbjct: 547 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 583
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 7.1
Identities = 20/135 (14%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 150 LEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGI 209
L ++ +G+ K + + E +A ++K E+ ++K ++
Sbjct: 295 LAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLK 354
Query: 210 DYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPT 269
D AE+ + E++++ E++ R+ + +K + ++
Sbjct: 355 DSEAEL------------QRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402
Query: 270 AMLQNLEPEKKRSKL 284
+ LE KK+ K+
Sbjct: 403 NSSRTLEKNKKKGKI 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.364
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,791,123
Number of extensions: 744209
Number of successful extensions: 1809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1727
Number of HSP's successfully gapped: 155
Length of query: 769
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 668
Effective length of database: 3,881,772
Effective search space: 2593023696
Effective search space used: 2593023696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.7 bits)