BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10644
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54CP1|RRP8_DICDI Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum
GN=rrp8 PE=3 SV=1
Length = 390
Score = 173 bits (438), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 42 KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPI 101
K T L+ ++ KLK +RFR+LNE LYT+ S+E+ F+EDR F+ YH GFK QV WPI
Sbjct: 154 KTTDLQNEMSEKLKGSRFRWLNETLYTTHSKEAFKEFSEDRSLFDQYHSGFKSQVESWPI 213
Query: 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT-QHKVHSLDLVALNERVTSCDMTR 160
NP+D+II + + + R IADLGCGEAKLA L +H + S DLVA+NERVT+CD++
Sbjct: 214 NPLDLIIDDLSSIKQRKR--IADLGCGEAKLAERLQHKHTIQSFDLVAVNERVTACDISN 271
Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
PLK S+D+AVFCLSLMGT+ I EA R+L G
Sbjct: 272 LPLKNESIDIAVFCLSLMGTNFIDFIIEAERVLVKG 307
>sp|Q10257|RRP8_SCHPO Ribosomal RNA-processing protein 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1
Length = 318
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 23/203 (11%)
Query: 12 AHSTSTSNS---------NVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYL 62
A S +T+NS +VP+I + G K ++K T L++K+ +KL A FR++
Sbjct: 51 AKSVTTNNSLKSEIKKEKSVPSIKEKNKGDAK-----HTKLTSLQQKMKDKLDGANFRWI 105
Query: 63 NEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQER------ES 116
NEQLYT++S+++ F E+ + F+ YH GF+ QV WP NPVDI I+ ++ R +
Sbjct: 106 NEQLYTTESDKAVQMFKENPDLFDIYHAGFRYQVEGWPENPVDIFIQHLKIRFEHSNAKK 165
Query: 117 KGRLVIADLGCGEAKLAAELTQHK---VHSLDLVALNERVTSCDMTRTPLKPYSVDVAVF 173
K +VIADLGCGEAK+A+ + + VHS DLVA NE V +CD+ P+ +VD+AVF
Sbjct: 166 KNNIVIADLGCGEAKIASTFRKSRSLQVHSFDLVAPNEHVVACDIANVPMADETVDIAVF 225
Query: 174 CLSLMGTDLAACIKEANRILKLG 196
CLSLMGT+ + +KEA RILK+G
Sbjct: 226 CLSLMGTNWQSFLKEAYRILKVG 248
>sp|Q9DB85|RRP8_MOUSE Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1
SV=1
Length = 457
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 109/156 (69%), Gaps = 3/156 (1%)
Query: 41 SKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWP 100
S+ LR ++ +L ARFRYLNEQLY+ S ++ F ED E+F YH GF++QV +WP
Sbjct: 234 SRAGALRARMTQRLDGARFRYLNEQLYSGPSSAARRLFQEDPEAFLLYHRGFQRQVKKWP 293
Query: 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTR 160
++PVD I K + R+ LV+AD GCG+ +LA+ + ++ VH DL +L+ RVT CDM +
Sbjct: 294 LHPVDRIAKDL--RQKPASLVVADFGCGDCRLASSV-RNPVHCFDLASLDPRVTVCDMAQ 350
Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
PL+ SVDVAVFCLSLMGT++ ++EANR+LK G
Sbjct: 351 VPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKTG 386
>sp|Q5U4F0|RRP8_RAT Ribosomal RNA-processing protein 8 OS=Rattus norvegicus GN=Rrp8
PE=2 SV=1
Length = 457
Score = 167 bits (423), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 107/151 (70%), Gaps = 3/151 (1%)
Query: 46 LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
LR ++ +L ARFRYLNEQLY+ S ++ F ED E+F YH GF++QV +WP++PVD
Sbjct: 239 LRARMTQRLDGARFRYLNEQLYSGPSSAAQCLFQEDPEAFLLYHRGFQRQVKKWPLHPVD 298
Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
I K + R+ LV+AD GCG+ +LA+ + ++ VH DL AL+ RVT CDM + PL+
Sbjct: 299 RIAKDL--RQKPASLVVADFGCGDCRLASSV-RNPVHCFDLAALDPRVTVCDMAQVPLED 355
Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
SVDVAVFCLSLMGT++ ++EANR+LK G
Sbjct: 356 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPG 386
>sp|O43159|RRP8_HUMAN Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1
SV=2
Length = 456
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 107/151 (70%), Gaps = 3/151 (1%)
Query: 46 LREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVD 105
LR ++ +L ARFRYLNEQLY+ S ++ F ED E+F YH GF+ QV +WP+ PVD
Sbjct: 238 LRARMAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVD 297
Query: 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKP 165
I + +++R + LV+AD GCG+ +LA+ + ++ VH DL +L+ RVT CDM + PL+
Sbjct: 298 RIARDLRQRPAS--LVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLED 354
Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
SVDVAVFCLSLMGT++ ++EANR+LK G
Sbjct: 355 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPG 385
>sp|A8XI07|RRP8_CAEBR Ribosomal RNA-processing protein 8 OS=Caenorhabditis briggsae
GN=CBG13492 PE=3 SV=1
Length = 332
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 42 KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPI 101
K P+ E +L + RFR LNE+LYT E+ DFF EDR +F+ YH GF QV +WP
Sbjct: 112 KENPIAE-AKKRLDAGRFRMLNEKLYTCTGSEAFDFFKEDRTAFDLYHRGFADQVKKWPN 170
Query: 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVALNERVTSCDMTR 160
+P+ II+ +Q + K + DLGCGEAK+A + + H + S DLVA+N+RV SCDM++
Sbjct: 171 HPLREIIRWLQAKPDKQ--AVFDLGCGEAKIAEAVGEKHTIRSFDLVAVNDRVESCDMSK 228
Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
P + S DV +FCLSLMGT+L IKEA R+L+ G
Sbjct: 229 LPAEDGSADVVIFCLSLMGTNLYDFIKEARRVLRTG 264
>sp|O44410|RRP8_CAEEL Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans
GN=T07A9.8 PE=3 SV=1
Length = 343
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 102/145 (70%), Gaps = 3/145 (2%)
Query: 53 KLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQ 112
+L + RFR+LNE+LYT E+ DFF ED +F+ YH+GF QV +WP +P+ II+ +Q
Sbjct: 133 RLDAGRFRFLNEKLYTCTGSEAFDFFKEDPTAFDLYHKGFADQVKKWPNHPLREIIRWLQ 192
Query: 113 ERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDLVALNERVTSCDMTRTPLKPYSVDVA 171
+ + + DLGCGEAK+A + + HK+ S DLVA+N+RV SCDM++ P + S D+
Sbjct: 193 SKPDQQSVF--DLGCGEAKIAEAVGEKHKIRSFDLVAVNDRVESCDMSKLPAEDSSADIV 250
Query: 172 VFCLSLMGTDLAACIKEANRILKLG 196
++CLSLMGT+L I+EA R+LK+G
Sbjct: 251 IYCLSLMGTNLYDFIREARRVLKIG 275
>sp|Q7K2B0|RRP8_DROME Ribosomal RNA-processing protein 8 OS=Drosophila melanogaster
GN=CG7137 PE=1 SV=1
Length = 358
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 110/159 (69%), Gaps = 7/159 (4%)
Query: 41 SKHTPLREKLLNKLKS----ARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQV 96
S TP L +KL+S RFRY+NEQLY++ S +++ F +D +FEAYH G+++QV
Sbjct: 133 SSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQV 192
Query: 97 TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSC 156
+WPINP++ IIK+I++ +I D GCGE KLA + +KV+S+DLVA + +C
Sbjct: 193 EKWPINPLNRIIKTIKKIPKTA--IIGDFGCGEGKLAQSVP-NKVYSMDLVAARSDIIAC 249
Query: 157 DMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKL 195
++T TPL+ ++DVAV+CLSLMGTDL EANR+LKL
Sbjct: 250 NITDTPLQARTLDVAVYCLSLMGTDLNEFFLEANRVLKL 288
>sp|P38961|RRP8_YEAST Ribosomal RNA-processing protein 8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP8 PE=1 SV=2
Length = 392
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 105/188 (55%), Gaps = 30/188 (15%)
Query: 36 EKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQ 95
EK + TPL++K++ KL +RFR++NEQLYT S+E+ E + F+ YH+GF+ Q
Sbjct: 103 EKPTKKQLTPLQQKMMAKLTGSRFRWINEQLYTISSDEALKLIKEQPQLFDEYHDGFRSQ 162
Query: 96 VTQWPINPVDIIIKSIQER--------------ESKGRLVIADLGCGEAKLAAELT---- 137
V WP NPVD+ + I+ R + +VIAD+GCGEA+LA E+
Sbjct: 163 VQAWPENPVDVFVDQIRYRCMKPVNAPGGLPGLKDSKEIVIADMGCGEAQLALEINNFFK 222
Query: 138 ------------QHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAAC 185
+HKVHS DL NER+T D+ PL S + VFCL+LMGT+
Sbjct: 223 NYNKKAKKYLKRRHKVHSFDLKKANERITVADIRNVPLPDESCTIVVFCLALMGTNFLDF 282
Query: 186 IKEANRIL 193
IKEA RIL
Sbjct: 283 IKEAYRIL 290
>sp|Q84JC0|RRP8_ARATH Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana
GN=At5g40530 PE=2 SV=1
Length = 287
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 102/147 (69%), Gaps = 3/147 (2%)
Query: 48 EKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDII 107
+ L +L +FR LNE+LYT +E+ D+F ED + F+ YH G+++Q++ WP PV+ I
Sbjct: 66 DALRERLSGGQFRMLNEKLYTCSGKEALDYFKEDPQMFDMYHTGYQQQMSNWPELPVNSI 125
Query: 108 IKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYS 167
I + S LV+AD GCG+A++A + ++KV S DLV+ N V +CDM+ T L+ S
Sbjct: 126 INWLLSNSSS--LVVADFGCGDARIAKSV-KNKVFSFDLVSKNPSVIACDMSNTSLESSS 182
Query: 168 VDVAVFCLSLMGTDLAACIKEANRILK 194
VDVAVFCLSLMGT+ ++ IKEA+R+L+
Sbjct: 183 VDVAVFCLSLMGTNYSSYIKEAHRVLR 209
>sp|Q47C02|BIOC_DECAR Malonyl-CoA O-methyltransferase BioC OS=Dechloromonas aromatica
(strain RCB) GN=bioC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 124 DLGCGEAKLAAELT-----QHKVHSLDLVA--LNERVTSC-----DMTRTPLKPYSVDVA 171
D GCG A L H+V +LDL L T C D+ PL S+D+
Sbjct: 57 DAGCGTGYAQANLQTRFPDAHRV-ALDLSPGMLQRVATPCCRVAGDLEHLPLADSSLDLY 115
Query: 172 VFCLSLMGTDLAACIKEANRILKLG 196
L++ DLA ++EA+R L+ G
Sbjct: 116 WSSLAVQWCDLAVALREAHRTLRPG 140
>sp|Q28H76|TRMBA_XENTR tRNA (guanine-N(7)-)-methyltransferase A OS=Xenopus tropicalis
GN=mettl1-A PE=2 SV=2
Length = 273
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 109 KSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLK 164
K +QER+ + ++ AD+GCG L EL+ ++L ++ L RV D + +K
Sbjct: 69 KDLQERKEQHQVEFADIGCGYGGLLVELSPLFPNTL-MLGLEIRVKVSDYVQDRIK 123
>sp|P80463|PHS1_PHALU Phaseolin OS=Phaseolus lunatus GN=PHA PE=1 SV=2
Length = 428
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 68 TSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPIN-PVDIIIKSIQERESKGRLVIADLG 126
T + + +DFF E+ ++Y GF+K + N P++ I + + E + VI ++G
Sbjct: 155 TVNNPQIQDFFLSSTEAQQSYLYGFRKDILDASFNSPIEEINRLLFAEEGRQEGVIVNIG 214
Query: 127 CGEAKLAAELTQH 139
+ L EL++H
Sbjct: 215 ---SDLIQELSRH 224
>sp|Q43617|PHS2_PHALU Phaseolin (Fragment) OS=Phaseolus lunatus GN=PHS PE=2 SV=1
Length = 423
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 68 TSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPIN-PVDIIIKSIQERESKGRLVIADLG 126
T + + +DFF E+ ++Y GF K + N P++ I + + E + VI ++G
Sbjct: 152 TVNNPQIQDFFLSSTEAQQSYLYGFSKHILDASFNSPIEKINRLLFAEEGRQEGVIVNIG 211
Query: 127 CGEAKLAAELTQH 139
+ L EL++H
Sbjct: 212 ---SDLIQELSRH 221
>sp|Q8EPS9|SYA_OCEIH Alanine--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM 14371
/ JCM 11309 / KCTC 3954 / HTE831) GN=alaS PE=3 SV=1
Length = 879
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 10 ETAHSTSTSNSNVPN----ILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQ 65
E +HS S S VP+ +L +SG +KY++ + P +++N KS R +
Sbjct: 19 EKSHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPDNPRIVNAQKSIRTNDIENV 78
Query: 66 LYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQW 99
YT++ F E +F + + FKK+ +W
Sbjct: 79 GYTARHHT----FFEMLGNF-SIGDYFKKEAMEW 107
>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia coli (strain
K12) GN=mfd PE=1 SV=2
Length = 1148
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 47 REKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDI 106
R+K K++ L+ +Y ++ + F DRE ++ + + F + T ++
Sbjct: 554 RQKAAEKVRDVAAELLD--IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611
Query: 107 IIKSIQERESKGRLVIADLGCGEAKLA 133
++ + + + RLV D+G G+ ++A
Sbjct: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVA 638
>sp|Q8CX09|MIAA_STRA5 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
V (strain ATCC BAA-611 / 2603 V/R) GN=miaA PE=3 SV=1
Length = 296
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 NVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTE 80
N P++ A+ G+K+ Y SK PL E+ ++KLK R+ QL ++ + +F
Sbjct: 218 NYPSVQASKGIGYKELFPYFSKQIPL-EEAVDKLKQNTRRFAKRQLTWFRNRMNVEFIMV 276
Query: 81 DRESFEAYHEGFKKQVTQW 99
E+ Y + K++V+ +
Sbjct: 277 GEEN---YQQKIKRKVSDF 292
>sp|Q3K0P1|MIAA_STRA1 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
Ia (strain ATCC 27591 / A909 / CDC SS700) GN=miaA PE=3
SV=1
Length = 296
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 NVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTE 80
N P++ A+ G+K+ Y SK PL E+ ++KLK R+ QL ++ + +F
Sbjct: 218 NYPSVQASRGIGYKELFPYFSKQIPL-EEAVDKLKQNTRRFAKRQLTWFRNRMNVEFIMV 276
Query: 81 DRESFEAYHEGFKKQVTQW 99
E+ Y + K++V+ +
Sbjct: 277 GEEN---YQQKIKRKVSDF 292
>sp|Q8E4V8|MIAA_STRA3 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=miaA PE=3 SV=1
Length = 296
Score = 30.0 bits (66), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 21 NVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTE 80
N P++ A+ G+K+ Y SK PL E+ ++KLK R+ QL ++ + +F
Sbjct: 218 NYPSVQASRGIGYKELFPYFSKQIPL-EEAVDKLKQNTRRFAKRQLTWFRNRMNVEFIMV 276
Query: 81 DRESFEAYHEGFKKQVTQW 99
E+ Y + K++V+ +
Sbjct: 277 GEEN---YQQKIKRKVSDF 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,036,573
Number of Sequences: 539616
Number of extensions: 2689990
Number of successful extensions: 6894
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6858
Number of HSP's gapped (non-prelim): 36
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)