Query psy10644
Match_columns 196
No_of_seqs 256 out of 2272
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:48:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05148 Methyltransf_8: Hypot 100.0 1.2E-43 2.6E-48 278.3 10.5 150 45-196 1-151 (219)
2 KOG3045|consensus 100.0 1.6E-41 3.5E-46 272.0 15.6 152 42-196 106-257 (325)
3 COG2226 UbiE Methylase involve 99.8 1.3E-18 2.7E-23 141.1 11.7 79 118-196 51-149 (238)
4 PF01209 Ubie_methyltran: ubiE 99.7 3.8E-18 8.2E-23 138.7 8.2 80 117-196 46-146 (233)
5 PRK05785 hypothetical protein; 99.7 4.3E-16 9.3E-21 126.1 11.4 89 106-195 40-139 (226)
6 PF08241 Methyltransf_11: Meth 99.7 1.5E-16 3.3E-21 110.0 7.1 74 123-196 1-90 (95)
7 PLN02233 ubiquinone biosynthes 99.7 7.7E-16 1.7E-20 127.1 12.4 80 117-196 72-175 (261)
8 PLN02396 hexaprenyldihydroxybe 99.7 7.3E-16 1.6E-20 130.6 11.0 79 118-196 131-228 (322)
9 PRK10258 biotin biosynthesis p 99.6 3.6E-15 7.8E-20 122.0 13.3 79 118-196 42-133 (251)
10 PRK14103 trans-aconitate 2-met 99.6 1.6E-15 3.4E-20 124.6 10.6 89 104-196 18-119 (255)
11 PLN02244 tocopherol O-methyltr 99.6 3.1E-15 6.6E-20 127.9 12.1 80 117-196 117-216 (340)
12 KOG1540|consensus 99.6 5.3E-15 1.1E-19 119.4 11.6 82 115-196 97-207 (296)
13 TIGR02752 MenG_heptapren 2-hep 99.6 2.8E-14 6.1E-19 115.2 13.6 82 115-196 42-144 (231)
14 PTZ00098 phosphoethanolamine N 99.6 1.5E-14 3.3E-19 119.5 10.5 93 104-196 38-149 (263)
15 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.7E-15 3.7E-20 121.7 4.4 79 118-196 59-154 (243)
16 PRK11036 putative S-adenosyl-L 99.6 2E-14 4.3E-19 118.1 9.7 80 117-196 43-142 (255)
17 PRK01683 trans-aconitate 2-met 99.6 4.1E-14 8.9E-19 116.1 11.3 81 115-196 28-123 (258)
18 PF13847 Methyltransf_31: Meth 99.5 1.7E-14 3.6E-19 109.5 8.0 78 118-196 3-103 (152)
19 PF13489 Methyltransf_23: Meth 99.5 1.4E-14 3.1E-19 109.7 7.4 92 104-196 9-108 (161)
20 KOG4300|consensus 99.5 7E-14 1.5E-18 109.9 9.8 78 119-196 77-175 (252)
21 TIGR02072 BioC biotin biosynth 99.5 5E-14 1.1E-18 113.3 8.4 92 105-196 21-128 (240)
22 PRK11207 tellurite resistance 99.5 1.2E-13 2.5E-18 109.6 9.0 92 101-196 16-127 (197)
23 PRK15068 tRNA mo(5)U34 methylt 99.5 1E-13 2.2E-18 117.7 9.1 79 117-196 121-219 (322)
24 PLN02336 phosphoethanolamine N 99.5 2.8E-13 6E-18 120.5 11.2 81 116-196 264-362 (475)
25 PF07021 MetW: Methionine bios 99.5 1.7E-13 3.7E-18 107.2 7.1 87 104-195 4-104 (193)
26 TIGR03587 Pse_Me-ase pseudamin 99.4 5.2E-13 1.1E-17 106.5 9.4 75 119-194 44-135 (204)
27 TIGR00477 tehB tellurite resis 99.4 5.5E-13 1.2E-17 105.5 9.1 91 102-196 17-126 (195)
28 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.1E-13 6.7E-18 115.2 8.2 79 118-196 113-208 (340)
29 PF12847 Methyltransf_18: Meth 99.4 2.8E-13 6.1E-18 97.0 6.7 78 118-196 1-104 (112)
30 PF13649 Methyltransf_25: Meth 99.4 1.1E-13 2.4E-18 98.0 4.3 75 122-196 1-100 (101)
31 TIGR00452 methyltransferase, p 99.4 5.9E-13 1.3E-17 112.5 9.2 81 115-196 118-218 (314)
32 PF08242 Methyltransf_12: Meth 99.4 2.4E-13 5.3E-18 95.6 5.6 74 123-196 1-96 (99)
33 PRK06922 hypothetical protein; 99.4 1.5E-12 3.2E-17 118.2 11.4 78 119-196 419-530 (677)
34 PRK11873 arsM arsenite S-adeno 99.4 8.2E-13 1.8E-17 109.3 8.7 80 117-196 76-176 (272)
35 PRK11188 rrmJ 23S rRNA methylt 99.4 2.1E-12 4.4E-17 103.4 10.2 80 117-196 50-158 (209)
36 PRK11088 rrmA 23S rRNA methylt 99.4 1.4E-12 2.9E-17 108.3 8.8 85 106-196 73-174 (272)
37 PRK08317 hypothetical protein; 99.4 3.2E-12 6.9E-17 102.6 10.6 82 115-196 16-117 (241)
38 KOG1270|consensus 99.4 5.5E-13 1.2E-17 108.3 5.8 75 119-196 90-188 (282)
39 PRK15451 tRNA cmo(5)U34 methyl 99.4 3E-12 6.6E-17 104.8 9.9 78 117-196 55-157 (247)
40 TIGR00740 methyltransferase, p 99.4 2.4E-12 5.3E-17 104.7 9.2 78 117-196 52-154 (239)
41 PRK06202 hypothetical protein; 99.4 3E-12 6.4E-17 103.7 9.7 78 118-195 60-160 (232)
42 TIGR02081 metW methionine bios 99.4 2.3E-12 5.1E-17 101.6 8.4 77 119-195 14-104 (194)
43 TIGR03840 TMPT_Se_Te thiopurin 99.4 4.3E-12 9.3E-17 101.9 9.4 99 98-196 13-145 (213)
44 PRK00216 ubiE ubiquinone/menaq 99.4 2.2E-11 4.8E-16 98.0 13.6 79 118-196 51-151 (239)
45 PF02353 CMAS: Mycolic acid cy 99.3 2.9E-12 6.4E-17 106.4 8.4 81 113-196 57-159 (273)
46 KOG3010|consensus 99.3 1.6E-12 3.4E-17 104.4 6.3 95 100-196 17-129 (261)
47 PRK12335 tellurite resistance 99.3 3.8E-12 8.3E-17 106.4 8.6 77 119-196 121-216 (287)
48 smart00828 PKS_MT Methyltransf 99.3 3.6E-12 7.7E-17 102.4 7.4 75 121-196 2-97 (224)
49 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.7E-11 1E-15 95.1 12.6 79 118-196 39-136 (223)
50 PRK13255 thiopurine S-methyltr 99.3 2.1E-11 4.6E-16 98.2 10.2 99 98-196 16-148 (218)
51 PRK00107 gidB 16S rRNA methylt 99.3 1.1E-11 2.3E-16 97.7 8.2 74 119-196 46-138 (187)
52 PLN02336 phosphoethanolamine N 99.3 1.2E-11 2.6E-16 110.0 9.5 90 104-196 26-135 (475)
53 COG2230 Cfa Cyclopropane fatty 99.3 1.5E-11 3.1E-16 101.9 9.1 82 112-196 66-169 (283)
54 TIGR02021 BchM-ChlM magnesium 99.3 1.8E-11 4E-16 98.2 8.9 88 105-196 43-151 (219)
55 PRK00121 trmB tRNA (guanine-N( 99.3 8.9E-12 1.9E-16 99.2 6.7 79 118-196 40-149 (202)
56 TIGR00138 gidB 16S rRNA methyl 99.3 2.6E-11 5.5E-16 95.0 9.0 74 119-196 43-135 (181)
57 smart00138 MeTrc Methyltransfe 99.3 5.8E-12 1.2E-16 104.3 5.5 79 118-196 99-235 (264)
58 PF03848 TehB: Tellurite resis 99.3 2.8E-11 6E-16 95.4 8.7 77 119-196 31-126 (192)
59 PRK11705 cyclopropane fatty ac 99.2 5E-11 1.1E-15 103.5 9.3 79 115-196 164-260 (383)
60 COG4106 Tam Trans-aconitate me 99.2 3E-11 6.5E-16 95.8 7.1 91 102-196 17-122 (257)
61 PF08003 Methyltransf_9: Prote 99.2 5.9E-11 1.3E-15 98.8 8.6 88 105-196 105-212 (315)
62 KOG1541|consensus 99.2 5.4E-11 1.2E-15 94.6 7.6 79 118-196 50-153 (270)
63 PRK07580 Mg-protoporphyrin IX 99.2 1.6E-10 3.5E-15 92.9 10.4 87 106-195 51-158 (230)
64 TIGR02469 CbiT precorrin-6Y C5 99.2 2.2E-10 4.7E-15 83.0 9.5 78 117-196 18-115 (124)
65 TIGR00091 tRNA (guanine-N(7)-) 99.2 4.6E-11 9.9E-16 94.4 5.9 78 119-196 17-125 (194)
66 PRK05134 bifunctional 3-demeth 99.1 3.4E-10 7.4E-15 91.5 10.2 80 117-196 47-144 (233)
67 PLN03075 nicotianamine synthas 99.1 4E-10 8.7E-15 94.2 9.9 78 118-196 123-226 (296)
68 TIGR00438 rrmJ cell division p 99.1 5E-10 1.1E-14 87.9 9.4 80 117-196 31-139 (188)
69 COG4976 Predicted methyltransf 99.1 2.9E-11 6.3E-16 96.6 1.9 113 84-196 90-218 (287)
70 PF05175 MTS: Methyltransferas 99.1 5.8E-10 1.2E-14 86.4 9.1 87 106-196 22-133 (170)
71 PRK14967 putative methyltransf 99.1 1E-09 2.3E-14 88.4 9.9 92 104-196 22-152 (223)
72 PLN02585 magnesium protoporphy 99.1 6.8E-10 1.5E-14 94.0 9.1 85 105-192 131-240 (315)
73 TIGR01983 UbiG ubiquinone bios 99.1 3.8E-10 8.2E-15 90.5 7.0 79 118-196 45-142 (224)
74 PRK13944 protein-L-isoaspartat 99.1 1.1E-09 2.4E-14 87.2 9.5 77 115-196 69-166 (205)
75 PRK13256 thiopurine S-methyltr 99.1 1.5E-09 3.3E-14 87.7 10.2 107 90-196 14-156 (226)
76 PRK14121 tRNA (guanine-N(7)-)- 99.0 7.4E-10 1.6E-14 95.8 8.4 80 117-196 121-228 (390)
77 PF05401 NodS: Nodulation prot 99.0 6.2E-10 1.3E-14 87.5 7.1 81 115-196 40-139 (201)
78 TIGR00537 hemK_rel_arch HemK-r 99.0 1.7E-09 3.7E-14 84.2 9.6 76 119-196 20-133 (179)
79 TIGR02716 C20_methyl_CrtF C-20 99.0 1.8E-09 3.9E-14 90.9 10.1 78 117-196 148-247 (306)
80 PRK15001 SAM-dependent 23S rib 99.0 1.3E-09 2.9E-14 94.3 9.2 77 119-196 229-333 (378)
81 PRK13942 protein-L-isoaspartat 99.0 1.6E-09 3.6E-14 86.8 9.0 77 115-196 73-169 (212)
82 TIGR03534 RF_mod_PrmC protein- 99.0 2.8E-09 6.2E-14 86.6 10.0 78 118-196 87-210 (251)
83 PRK04266 fibrillarin; Provisio 99.0 2.3E-09 5.1E-14 86.8 9.3 80 114-196 68-169 (226)
84 TIGR03438 probable methyltrans 99.0 4.8E-09 1E-13 88.4 11.3 79 118-196 63-170 (301)
85 PF13659 Methyltransf_26: Meth 99.0 5.1E-10 1.1E-14 80.6 4.4 78 119-196 1-108 (117)
86 PRK08287 cobalt-precorrin-6Y C 99.0 5.2E-09 1.1E-13 82.0 10.3 76 117-196 30-124 (187)
87 PRK09489 rsmC 16S ribosomal RN 99.0 2.4E-09 5.2E-14 91.7 8.6 76 119-196 197-296 (342)
88 PTZ00146 fibrillarin; Provisio 98.9 3.3E-09 7.1E-14 88.6 8.1 87 109-196 123-230 (293)
89 TIGR00080 pimt protein-L-isoas 98.9 5.4E-09 1.2E-13 83.8 8.7 77 115-196 74-170 (215)
90 cd02440 AdoMet_MTases S-adenos 98.9 4.9E-09 1.1E-13 71.9 7.3 76 121-196 1-97 (107)
91 PRK00377 cbiT cobalt-precorrin 98.9 1.1E-08 2.4E-13 81.0 9.7 82 113-196 35-138 (198)
92 KOG2361|consensus 98.9 4.8E-09 1E-13 84.5 7.5 76 121-196 74-176 (264)
93 TIGR00406 prmA ribosomal prote 98.9 9.5E-09 2.1E-13 86.1 9.5 84 108-196 150-252 (288)
94 TIGR01177 conserved hypothetic 98.9 9E-09 2E-13 87.7 9.0 80 117-196 181-287 (329)
95 PRK14968 putative methyltransf 98.9 1.8E-08 3.9E-13 78.3 9.2 78 118-196 23-141 (188)
96 PF05724 TPMT: Thiopurine S-me 98.9 9.9E-09 2.1E-13 82.7 7.9 107 90-196 8-148 (218)
97 PRK00312 pcm protein-L-isoaspa 98.8 2.6E-08 5.6E-13 79.5 9.3 77 115-196 75-168 (212)
98 KOG1331|consensus 98.8 8.7E-09 1.9E-13 84.9 6.6 92 103-196 32-136 (293)
99 PRK07402 precorrin-6B methylas 98.8 3.8E-08 8.3E-13 77.7 9.7 79 115-196 37-135 (196)
100 TIGR00536 hemK_fam HemK family 98.8 4.3E-08 9.3E-13 81.9 9.3 76 120-196 116-237 (284)
101 PF00891 Methyltransf_2: O-met 98.8 1.5E-07 3.2E-12 76.6 12.1 77 117-196 99-190 (241)
102 smart00650 rADc Ribosomal RNA 98.8 3.1E-08 6.7E-13 76.5 7.6 64 116-179 11-89 (169)
103 PRK09328 N5-glutamine S-adenos 98.8 6.7E-08 1.4E-12 79.8 10.0 91 105-196 94-231 (275)
104 PRK11805 N5-glutamine S-adenos 98.8 5.3E-08 1.2E-12 82.3 9.5 76 120-196 135-256 (307)
105 TIGR03533 L3_gln_methyl protei 98.7 7.1E-08 1.5E-12 80.7 9.8 78 118-196 121-244 (284)
106 PF03141 Methyltransf_29: Puta 98.7 7.6E-09 1.7E-13 91.1 3.5 77 120-196 119-212 (506)
107 PLN02232 ubiquinone biosynthes 98.7 1.7E-08 3.8E-13 77.4 5.0 47 150-196 27-74 (160)
108 PRK14966 unknown domain/N5-glu 98.7 1.6E-07 3.5E-12 82.0 9.9 74 101-175 235-327 (423)
109 PRK00517 prmA ribosomal protei 98.7 4.5E-08 9.7E-13 80.3 6.0 87 107-196 109-206 (250)
110 KOG2940|consensus 98.7 5.1E-08 1.1E-12 78.3 5.9 78 119-196 73-167 (325)
111 COG4123 Predicted O-methyltran 98.7 6.1E-08 1.3E-12 79.1 6.5 78 119-196 45-163 (248)
112 COG2242 CobL Precorrin-6B meth 98.7 1.6E-07 3.4E-12 73.3 8.6 82 111-196 27-128 (187)
113 PRK13943 protein-L-isoaspartat 98.6 1.8E-07 3.8E-12 79.6 9.4 77 115-196 77-173 (322)
114 COG2813 RsmC 16S RNA G1207 met 98.6 1.4E-07 3.1E-12 78.6 8.3 80 115-196 155-259 (300)
115 PF05219 DREV: DREV methyltran 98.6 1.1E-07 2.3E-12 77.8 7.4 79 118-196 94-181 (265)
116 PRK00811 spermidine synthase; 98.6 1.5E-07 3.2E-12 78.7 8.4 78 119-196 77-184 (283)
117 PHA03411 putative methyltransf 98.6 1.6E-07 3.4E-12 77.9 8.2 59 119-178 65-137 (279)
118 TIGR03704 PrmC_rel_meth putati 98.6 4.3E-07 9.3E-12 74.7 10.4 78 119-196 87-209 (251)
119 COG2264 PrmA Ribosomal protein 98.6 1.3E-07 2.9E-12 79.1 7.2 85 108-196 153-256 (300)
120 PHA03412 putative methyltransf 98.6 1.6E-07 3.5E-12 76.2 6.4 77 119-196 50-156 (241)
121 PRK14901 16S rRNA methyltransf 98.5 2.9E-07 6.4E-12 81.3 8.0 82 115-196 249-377 (434)
122 PRK10901 16S rRNA methyltransf 98.5 4.8E-07 1E-11 79.8 9.2 82 115-196 241-365 (427)
123 PRK01544 bifunctional N5-gluta 98.5 4.8E-07 1E-11 81.4 9.4 77 119-196 139-262 (506)
124 PF03291 Pox_MCEL: mRNA cappin 98.5 2E-07 4.4E-12 79.5 6.4 79 118-196 62-179 (331)
125 PF06325 PrmA: Ribosomal prote 98.5 5.3E-07 1.2E-11 75.7 8.7 86 106-196 150-252 (295)
126 PRK14904 16S rRNA methyltransf 98.5 5.2E-07 1.1E-11 80.0 9.0 80 116-196 248-370 (445)
127 PRK04457 spermidine synthase; 98.5 3.2E-07 7E-12 75.9 7.1 77 119-196 67-170 (262)
128 PF05185 PRMT5: PRMT5 arginine 98.5 1.3E-06 2.8E-11 77.4 11.1 114 71-196 149-290 (448)
129 PRK14903 16S rRNA methyltransf 98.5 7.5E-07 1.6E-11 78.7 8.7 82 115-196 234-359 (431)
130 PF02390 Methyltransf_4: Putat 98.4 6.5E-07 1.4E-11 71.0 6.9 78 119-196 18-126 (195)
131 KOG1975|consensus 98.4 6.7E-07 1.5E-11 75.0 7.2 80 117-196 116-230 (389)
132 PF10294 Methyltransf_16: Puta 98.4 1.5E-06 3.2E-11 67.5 8.8 80 117-196 44-149 (173)
133 PRK14896 ksgA 16S ribosomal RN 98.4 9E-07 2E-11 73.0 7.9 61 117-179 28-103 (258)
134 PF11968 DUF3321: Putative met 98.4 1.4E-06 3.1E-11 69.5 8.6 95 102-196 30-137 (219)
135 PRK00274 ksgA 16S ribosomal RN 98.4 6.3E-07 1.4E-11 74.5 6.8 63 116-178 40-116 (272)
136 TIGR00446 nop2p NOL1/NOP2/sun 98.4 9.3E-07 2E-11 73.2 7.8 82 115-196 68-192 (264)
137 KOG1271|consensus 98.4 6.4E-07 1.4E-11 69.7 6.1 76 121-196 70-174 (227)
138 KOG1499|consensus 98.4 1.1E-06 2.3E-11 74.5 7.9 59 119-177 61-137 (346)
139 PF01739 CheR: CheR methyltran 98.4 7.6E-07 1.7E-11 70.6 6.5 79 118-196 31-168 (196)
140 TIGR00563 rsmB ribosomal RNA s 98.4 1.1E-06 2.4E-11 77.5 8.1 82 115-196 235-361 (426)
141 COG2263 Predicted RNA methylas 98.4 1.3E-06 2.8E-11 68.3 7.3 57 118-177 45-118 (198)
142 TIGR00417 speE spermidine synt 98.4 1.4E-06 2.9E-11 72.4 8.0 78 119-196 73-179 (270)
143 PLN02781 Probable caffeoyl-CoA 98.4 1.6E-06 3.6E-11 70.5 8.2 88 105-196 57-171 (234)
144 PRK14902 16S rRNA methyltransf 98.4 1.7E-06 3.6E-11 76.7 8.8 80 116-196 248-372 (444)
145 PF06080 DUF938: Protein of un 98.4 1.5E-06 3.3E-11 69.0 7.3 92 105-196 12-134 (204)
146 PRK04148 hypothetical protein; 98.3 1.4E-06 3E-11 64.9 6.4 73 118-192 16-100 (134)
147 COG2890 HemK Methylase of poly 98.3 1.5E-06 3.3E-11 72.6 7.3 72 100-174 92-183 (280)
148 PLN02366 spermidine synthase 98.3 3.2E-06 6.9E-11 71.5 8.6 78 119-196 92-199 (308)
149 PRK01581 speE spermidine synth 98.3 2.7E-06 5.8E-11 73.2 7.9 78 119-196 151-261 (374)
150 PF01135 PCMT: Protein-L-isoas 98.3 1.6E-06 3.4E-11 69.5 6.2 64 114-177 68-151 (209)
151 PF07942 N2227: N2227-like pro 98.3 8.8E-06 1.9E-10 67.4 10.4 93 104-196 37-195 (270)
152 TIGR00755 ksgA dimethyladenosi 98.3 2.6E-06 5.5E-11 70.0 7.2 63 115-179 26-106 (253)
153 KOG1269|consensus 98.3 7.6E-07 1.7E-11 76.8 4.1 79 118-196 110-208 (364)
154 PRK03522 rumB 23S rRNA methylu 98.3 1.3E-06 2.9E-11 74.0 5.4 56 119-174 174-247 (315)
155 PRK10611 chemotaxis methyltran 98.3 1.6E-06 3.5E-11 72.6 5.7 78 119-196 116-255 (287)
156 PRK13168 rumA 23S rRNA m(5)U19 98.3 1.9E-06 4.2E-11 76.3 6.4 58 117-174 296-374 (443)
157 TIGR00478 tly hemolysin TlyA f 98.2 9.8E-07 2.1E-11 71.6 4.1 69 118-186 75-162 (228)
158 PRK10909 rsmD 16S rRNA m(2)G96 98.2 5E-06 1.1E-10 66.1 7.9 59 119-177 54-131 (199)
159 PF05891 Methyltransf_PK: AdoM 98.2 3E-06 6.5E-11 67.8 6.1 79 118-196 55-154 (218)
160 COG2518 Pcm Protein-L-isoaspar 98.2 4.5E-06 9.7E-11 66.5 7.1 64 114-177 68-148 (209)
161 KOG2904|consensus 98.2 4.1E-06 9E-11 69.0 7.0 72 104-175 134-230 (328)
162 PTZ00338 dimethyladenosine tra 98.2 4.6E-06 1E-10 70.1 7.3 64 115-180 33-114 (294)
163 PRK03612 spermidine synthase; 98.2 5.7E-06 1.2E-10 74.8 7.7 78 119-196 298-408 (521)
164 KOG3420|consensus 98.2 1.7E-06 3.7E-11 65.0 3.4 60 118-177 48-124 (185)
165 COG2521 Predicted archaeal met 98.1 8.8E-06 1.9E-10 65.7 7.3 96 101-196 117-238 (287)
166 COG1352 CheR Methylase of chem 98.1 6E-05 1.3E-09 62.5 12.2 79 118-196 96-234 (268)
167 PRK11783 rlmL 23S rRNA m(2)G24 98.1 4.1E-06 8.9E-11 78.2 5.9 78 119-196 539-649 (702)
168 PRK11760 putative 23S rRNA C24 98.0 5.3E-05 1.2E-09 64.6 10.4 60 117-176 210-279 (357)
169 COG2519 GCD14 tRNA(1-methylade 98.0 2.7E-05 5.9E-10 63.6 8.1 77 115-196 91-188 (256)
170 COG0500 SmtA SAM-dependent met 98.0 3.4E-05 7.4E-10 55.2 7.8 74 122-196 52-148 (257)
171 PRK15128 23S rRNA m(5)C1962 me 98.0 2.1E-05 4.5E-10 68.8 7.3 79 118-196 220-332 (396)
172 KOG2899|consensus 98.0 2.1E-05 4.6E-10 63.8 6.6 31 118-148 58-92 (288)
173 COG0220 Predicted S-adenosylme 98.0 1.3E-05 2.8E-10 65.0 5.3 77 120-196 50-157 (227)
174 PLN02672 methionine S-methyltr 97.9 2.5E-05 5.3E-10 75.5 7.2 75 100-174 98-210 (1082)
175 PF08123 DOT1: Histone methyla 97.9 9E-06 2E-10 64.9 3.5 87 110-196 34-151 (205)
176 PLN02476 O-methyltransferase 97.9 5.8E-05 1.2E-09 63.0 8.2 89 104-196 106-221 (278)
177 PRK11727 23S rRNA mA1618 methy 97.9 6.2E-05 1.4E-09 64.0 8.5 63 118-180 114-202 (321)
178 COG3963 Phospholipid N-methylt 97.9 3.7E-05 8E-10 59.1 6.3 82 115-196 45-149 (194)
179 TIGR00479 rumA 23S rRNA (uraci 97.9 1.8E-05 4E-10 69.8 5.4 58 117-174 291-369 (431)
180 PF01596 Methyltransf_3: O-met 97.9 4.2E-05 9.2E-10 61.1 6.7 87 106-196 35-148 (205)
181 PF08704 GCD14: tRNA methyltra 97.8 5.7E-05 1.2E-09 62.0 7.2 78 115-196 37-139 (247)
182 PF01728 FtsJ: FtsJ-like methy 97.8 2.6E-05 5.7E-10 60.6 5.0 60 118-177 23-101 (181)
183 PRK01544 bifunctional N5-gluta 97.8 2.9E-05 6.2E-10 70.0 5.3 79 118-196 347-455 (506)
184 KOG1500|consensus 97.8 5.4E-05 1.2E-09 64.2 6.4 78 118-196 177-275 (517)
185 KOG0820|consensus 97.8 8.5E-05 1.8E-09 61.3 7.4 60 114-175 54-131 (315)
186 COG0030 KsgA Dimethyladenosine 97.8 7.8E-05 1.7E-09 61.5 7.1 64 115-178 27-106 (259)
187 KOG3191|consensus 97.8 7.6E-05 1.6E-09 58.2 6.1 56 119-175 44-118 (209)
188 TIGR02085 meth_trns_rumB 23S r 97.7 2.4E-05 5.3E-10 67.9 3.7 57 119-175 234-308 (374)
189 COG0293 FtsJ 23S rRNA methylas 97.6 0.0011 2.4E-08 52.8 11.3 60 117-176 44-120 (205)
190 PF02527 GidB: rRNA small subu 97.6 0.00011 2.4E-09 57.7 5.6 72 121-196 51-141 (184)
191 COG4122 Predicted O-methyltran 97.6 0.00018 3.9E-09 58.0 6.7 88 104-196 47-159 (219)
192 PLN02823 spermine synthase 97.6 0.00032 7E-09 60.1 8.3 78 119-196 104-213 (336)
193 TIGR00095 RNA methyltransferas 97.6 0.00043 9.3E-09 54.6 8.2 71 119-189 50-143 (189)
194 PF02475 Met_10: Met-10+ like- 97.5 0.00015 3.2E-09 57.7 4.7 76 117-196 100-195 (200)
195 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00031 6.7E-09 57.7 6.4 89 104-196 67-183 (247)
196 COG1041 Predicted DNA modifica 97.4 0.00064 1.4E-08 58.1 7.9 80 117-196 196-303 (347)
197 PF01170 UPF0020: Putative RNA 97.4 0.00027 5.9E-09 55.2 5.3 79 117-195 27-143 (179)
198 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00028 6E-09 59.4 5.1 71 104-177 8-100 (296)
199 KOG1661|consensus 97.3 0.00048 1E-08 54.9 5.6 72 104-176 69-171 (237)
200 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00028 6.1E-09 61.1 4.4 41 120-160 208-265 (362)
201 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00098 2.1E-08 55.1 7.3 71 104-177 19-107 (262)
202 PF03141 Methyltransf_29: Puta 97.3 0.0005 1.1E-08 61.2 5.8 77 120-196 367-460 (506)
203 TIGR02143 trmA_only tRNA (urac 97.3 0.00032 6.9E-09 60.5 4.5 41 120-160 199-256 (353)
204 KOG3987|consensus 97.3 4.5E-05 9.8E-10 60.7 -0.7 77 119-195 113-198 (288)
205 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.0011 2.4E-08 54.7 7.1 78 118-196 56-192 (256)
206 TIGR03439 methyl_EasF probable 97.2 0.0069 1.5E-07 51.6 11.8 79 118-196 76-190 (319)
207 KOG4589|consensus 97.2 0.00097 2.1E-08 52.4 6.0 61 117-177 68-146 (232)
208 KOG2352|consensus 97.2 0.00092 2E-08 59.2 6.0 77 120-196 50-154 (482)
209 COG4627 Uncharacterized protei 97.1 0.00017 3.8E-09 54.8 1.3 72 121-196 5-79 (185)
210 PRK04338 N(2),N(2)-dimethylgua 97.1 0.0012 2.5E-08 57.7 6.2 75 119-196 58-151 (382)
211 KOG3178|consensus 97.0 0.0037 8.1E-08 53.3 8.5 75 119-196 178-268 (342)
212 COG0357 GidB Predicted S-adeno 97.0 0.0079 1.7E-07 48.4 9.9 58 119-176 68-144 (215)
213 PRK11933 yebU rRNA (cytosine-C 97.0 0.0043 9.4E-08 55.5 9.3 82 115-196 110-235 (470)
214 PRK00536 speE spermidine synth 97.0 0.0047 1E-07 51.2 8.8 72 118-196 72-164 (262)
215 KOG1709|consensus 97.0 0.0028 6E-08 50.9 6.9 96 97-196 84-199 (271)
216 COG0421 SpeE Spermidine syntha 97.0 0.003 6.6E-08 52.8 7.5 77 120-196 78-183 (282)
217 PF07757 AdoMet_MTase: Predict 96.9 0.0033 7.2E-08 44.9 6.1 65 84-148 10-90 (112)
218 COG4076 Predicted RNA methylas 96.9 0.0037 8E-08 49.2 6.9 74 119-194 33-126 (252)
219 PF09243 Rsm22: Mitochondrial 96.9 0.0041 8.9E-08 51.8 7.3 89 104-194 18-132 (274)
220 PF01564 Spermine_synth: Sperm 96.8 0.0031 6.7E-08 51.7 5.9 79 118-196 76-184 (246)
221 KOG2798|consensus 96.8 0.0039 8.4E-08 52.6 6.2 93 104-196 131-289 (369)
222 PF13679 Methyltransf_32: Meth 96.8 0.0051 1.1E-07 45.9 6.4 32 117-148 24-63 (141)
223 PF09445 Methyltransf_15: RNA 96.6 0.00083 1.8E-08 51.7 1.2 54 121-174 2-76 (163)
224 PF05958 tRNA_U5-meth_tr: tRNA 96.6 0.0052 1.1E-07 53.0 6.1 40 121-160 199-255 (352)
225 PF03059 NAS: Nicotianamine sy 96.6 0.015 3.2E-07 48.6 8.5 77 120-196 122-223 (276)
226 PF02384 N6_Mtase: N-6 DNA Met 96.5 0.0032 6.9E-08 53.0 3.9 63 115-177 43-135 (311)
227 PF03602 Cons_hypoth95: Conser 96.3 0.0035 7.6E-08 49.2 3.3 77 119-195 43-145 (183)
228 COG2265 TrmA SAM-dependent met 96.2 0.0086 1.9E-07 53.1 5.5 57 117-173 292-368 (432)
229 KOG1663|consensus 96.1 0.029 6.3E-07 45.4 7.4 75 119-196 74-176 (237)
230 COG1092 Predicted SAM-dependen 96.0 0.016 3.6E-07 50.6 6.1 78 119-196 218-329 (393)
231 PRK11783 rlmL 23S rRNA m(2)G24 96.0 0.034 7.4E-07 52.3 8.4 55 140-194 258-335 (702)
232 KOG2730|consensus 95.9 0.0076 1.7E-07 48.5 3.3 58 119-176 95-174 (263)
233 PF07091 FmrO: Ribosomal RNA m 95.9 0.027 5.8E-07 46.2 6.4 75 104-180 92-184 (251)
234 TIGR01444 fkbM_fam methyltrans 95.9 0.0072 1.6E-07 44.7 2.8 28 121-148 1-32 (143)
235 COG4798 Predicted methyltransf 95.8 0.023 5E-07 45.0 5.4 79 117-196 47-159 (238)
236 KOG2915|consensus 95.8 0.066 1.4E-06 44.5 8.3 68 104-174 94-184 (314)
237 PF12147 Methyltransf_20: Puta 95.8 0.079 1.7E-06 44.5 8.8 79 118-196 135-242 (311)
238 COG1189 Predicted rRNA methyla 95.7 0.076 1.7E-06 43.3 8.2 76 118-196 79-171 (245)
239 COG3897 Predicted methyltransf 95.7 0.02 4.2E-07 45.4 4.7 58 118-178 79-153 (218)
240 PF04816 DUF633: Family of unk 95.5 0.022 4.8E-07 45.5 4.5 53 122-175 1-74 (205)
241 TIGR02987 met_A_Alw26 type II 95.5 0.021 4.6E-07 51.7 4.9 30 119-148 32-73 (524)
242 KOG0822|consensus 95.4 0.067 1.5E-06 48.2 7.6 78 119-196 368-471 (649)
243 PF01269 Fibrillarin: Fibrilla 95.4 0.062 1.3E-06 43.4 6.6 85 111-196 66-171 (229)
244 COG2520 Predicted methyltransf 95.3 0.037 8.1E-07 47.5 5.6 75 118-195 188-281 (341)
245 PF04672 Methyltransf_19: S-ad 94.9 0.34 7.3E-06 40.3 9.8 78 119-196 69-183 (267)
246 TIGR00308 TRM1 tRNA(guanine-26 94.8 0.034 7.4E-07 48.4 4.1 75 119-196 45-140 (374)
247 PF03492 Methyltransf_7: SAM d 94.8 0.11 2.4E-06 44.5 7.2 65 116-180 14-120 (334)
248 KOG2187|consensus 94.6 0.045 9.8E-07 49.1 4.3 43 118-160 383-442 (534)
249 PF10672 Methyltrans_SAM: S-ad 94.5 0.04 8.6E-07 46.3 3.6 78 119-196 124-231 (286)
250 KOG3201|consensus 94.2 0.015 3.2E-07 44.8 0.3 78 119-196 30-133 (201)
251 PF05971 Methyltransf_10: Prot 94.0 0.34 7.3E-06 41.0 8.0 62 119-180 103-190 (299)
252 PLN02668 indole-3-acetate carb 93.5 0.12 2.7E-06 45.1 4.8 18 163-180 158-175 (386)
253 KOG2920|consensus 93.4 0.17 3.8E-06 42.2 5.2 31 118-148 116-149 (282)
254 PF13578 Methyltransf_24: Meth 93.1 0.024 5.3E-07 39.8 -0.1 73 123-196 1-98 (106)
255 COG0144 Sun tRNA and rRNA cyto 93.1 0.52 1.1E-05 40.7 8.0 82 115-196 153-281 (355)
256 COG2384 Predicted SAM-dependen 93.0 0.21 4.5E-06 40.3 5.0 56 119-175 17-93 (226)
257 KOG1099|consensus 92.9 0.16 3.5E-06 41.4 4.2 77 120-196 43-156 (294)
258 TIGR00006 S-adenosyl-methyltra 92.9 0.25 5.4E-06 41.9 5.6 71 104-177 9-102 (305)
259 KOG4058|consensus 92.8 0.23 5E-06 37.8 4.6 64 115-178 69-151 (199)
260 PTZ00357 methyltransferase; Pr 92.5 0.53 1.2E-05 44.2 7.5 125 71-195 638-823 (1072)
261 PF04445 SAM_MT: Putative SAM- 92.4 0.15 3.2E-06 41.6 3.4 58 120-177 77-161 (234)
262 COG0742 N6-adenine-specific me 92.1 0.44 9.5E-06 37.5 5.6 78 119-196 44-147 (187)
263 PRK10742 putative methyltransf 91.9 0.39 8.5E-06 39.5 5.3 28 121-148 91-120 (250)
264 PF03686 UPF0146: Uncharacteri 91.8 0.68 1.5E-05 34.1 6.0 81 107-191 4-92 (127)
265 KOG2793|consensus 91.8 0.67 1.4E-05 38.1 6.6 75 119-193 87-189 (248)
266 PF04989 CmcI: Cephalosporin h 91.3 0.96 2.1E-05 36.2 6.8 78 119-196 33-140 (206)
267 COG0116 Predicted N6-adenine-s 91.0 0.86 1.9E-05 39.8 6.8 37 141-177 257-309 (381)
268 COG1889 NOP1 Fibrillarin-like 90.7 1.1 2.3E-05 36.0 6.5 44 105-148 63-110 (231)
269 KOG3115|consensus 90.3 0.22 4.8E-06 39.9 2.4 30 119-148 61-94 (249)
270 COG5459 Predicted rRNA methyla 89.1 0.47 1E-05 41.1 3.6 78 119-196 114-218 (484)
271 COG4262 Predicted spermidine s 88.4 1.2 2.6E-05 38.8 5.6 78 119-196 290-400 (508)
272 cd00315 Cyt_C5_DNA_methylase C 87.5 0.9 1.9E-05 37.8 4.3 55 121-175 2-70 (275)
273 KOG2651|consensus 87.1 1.2 2.5E-05 39.1 4.8 30 119-148 154-186 (476)
274 PF02636 Methyltransf_28: Puta 87.0 1.4 3E-05 36.0 5.2 30 119-148 19-60 (252)
275 PHA01634 hypothetical protein 87.0 1.9 4.1E-05 32.1 5.2 55 118-172 28-97 (156)
276 KOG1098|consensus 86.3 0.49 1.1E-05 43.7 2.2 42 118-159 44-94 (780)
277 PF01555 N6_N4_Mtase: DNA meth 85.2 1.3 2.9E-05 34.6 4.1 44 104-148 178-223 (231)
278 PF01189 Nol1_Nop2_Fmu: NOL1/N 84.5 0.78 1.7E-05 38.4 2.5 59 115-173 82-162 (283)
279 COG2933 Predicted SAM-dependen 84.4 5.4 0.00012 33.4 7.2 32 117-148 210-243 (358)
280 COG1255 Uncharacterized protei 82.6 7.7 0.00017 28.3 6.5 72 119-193 14-94 (129)
281 PF01795 Methyltransf_5: MraW 81.5 3.9 8.5E-05 34.8 5.6 71 104-177 9-103 (310)
282 COG1565 Uncharacterized conser 81.4 3.2 7E-05 36.0 5.1 42 107-148 66-119 (370)
283 COG1064 AdhP Zn-dependent alco 80.7 7.4 0.00016 33.5 7.0 65 111-176 159-238 (339)
284 COG3129 Predicted SAM-dependen 80.2 6.3 0.00014 32.4 6.0 64 117-180 77-166 (292)
285 KOG1501|consensus 80.1 3.1 6.6E-05 37.2 4.5 75 119-193 67-164 (636)
286 PF06962 rRNA_methylase: Putat 79.9 3 6.5E-05 31.3 3.9 57 140-196 1-85 (140)
287 PF01861 DUF43: Protein of unk 79.5 12 0.00026 30.7 7.5 76 118-194 44-139 (243)
288 PF05206 TRM13: Methyltransfer 78.1 5.4 0.00012 33.1 5.2 32 117-148 17-57 (259)
289 PRK11524 putative methyltransf 74.6 6.7 0.00014 32.7 5.0 43 106-148 196-240 (284)
290 PRK13699 putative methylase; P 74.3 6.8 0.00015 31.6 4.8 45 103-148 149-195 (227)
291 PF12692 Methyltransf_17: S-ad 73.6 10 0.00022 28.9 5.2 62 119-180 29-106 (160)
292 PRK09424 pntA NAD(P) transhydr 70.7 18 0.00039 33.0 7.1 79 118-196 164-278 (509)
293 PF06016 Reovirus_L2: Reovirus 70.3 23 0.00049 35.7 8.0 77 119-195 823-917 (1289)
294 cd08283 FDH_like_1 Glutathione 70.2 16 0.00034 31.5 6.5 80 117-196 183-299 (386)
295 COG4301 Uncharacterized conser 69.9 32 0.00069 28.7 7.7 78 119-196 79-186 (321)
296 KOG3924|consensus 69.6 7.1 0.00015 34.3 4.1 93 104-196 178-301 (419)
297 KOG1596|consensus 68.3 17 0.00038 30.1 5.8 36 113-148 151-191 (317)
298 COG3189 Uncharacterized conser 67.2 16 0.00034 26.4 4.8 29 69-97 46-74 (117)
299 cd08254 hydroxyacyl_CoA_DH 6-h 66.1 29 0.00063 28.6 7.2 75 117-196 164-256 (338)
300 COG0275 Predicted S-adenosylme 65.4 21 0.00045 30.4 5.9 64 114-177 19-106 (314)
301 PF07101 DUF1363: Protein of u 64.5 2.5 5.4E-05 29.6 0.3 11 123-133 7-17 (124)
302 PF11899 DUF3419: Protein of u 61.3 14 0.00029 32.5 4.3 34 115-148 32-67 (380)
303 PF11312 DUF3115: Protein of u 60.8 7.7 0.00017 33.0 2.6 47 150-196 176-235 (315)
304 COG3510 CmcI Cephalosporin hyd 60.3 38 0.00082 27.1 6.2 42 119-160 70-129 (237)
305 PF03514 GRAS: GRAS domain fam 59.4 24 0.00053 30.7 5.6 39 105-146 100-149 (374)
306 COG0286 HsdM Type I restrictio 56.9 20 0.00042 32.5 4.7 32 117-148 185-224 (489)
307 PF06460 NSP13: Coronavirus NS 56.9 28 0.00061 29.1 5.2 58 118-176 61-130 (299)
308 PRK01747 mnmC bifunctional tRN 56.5 17 0.00037 34.0 4.4 31 166-196 165-199 (662)
309 TIGR00561 pntA NAD(P) transhyd 55.9 17 0.00038 33.1 4.2 79 118-196 163-277 (511)
310 PF00145 DNA_methylase: C-5 cy 51.6 12 0.00025 31.0 2.3 53 121-174 2-68 (335)
311 KOG2872|consensus 51.3 77 0.0017 27.0 6.9 28 121-148 253-282 (359)
312 KOG1122|consensus 51.0 28 0.00061 31.0 4.5 58 115-173 238-318 (460)
313 PRK09880 L-idonate 5-dehydroge 50.7 53 0.0011 27.6 6.2 74 118-196 169-259 (343)
314 PRK15181 Vi polysaccharide bio 50.1 48 0.001 28.1 5.9 58 119-177 15-100 (348)
315 COG4017 Uncharacterized protei 49.6 26 0.00057 28.0 3.7 62 118-183 44-115 (254)
316 PF02254 TrkA_N: TrkA-N domain 49.3 21 0.00044 24.9 3.0 49 127-175 4-70 (116)
317 TIGR00675 dcm DNA-methyltransf 49.3 16 0.00034 31.0 2.7 52 122-174 1-66 (315)
318 KOG2811|consensus 47.0 47 0.001 29.2 5.2 18 119-136 183-200 (420)
319 TIGR00027 mthyl_TIGR00027 meth 46.7 1.4E+02 0.003 24.5 7.9 78 119-196 82-190 (260)
320 COG5379 BtaA S-adenosylmethion 45.9 35 0.00076 29.2 4.1 31 118-148 63-95 (414)
321 PLN00016 RNA-binding protein; 44.6 32 0.00069 29.5 4.0 58 119-176 52-139 (378)
322 COG1086 Predicted nucleoside-d 44.4 57 0.0012 30.2 5.6 68 119-187 250-350 (588)
323 PLN02657 3,8-divinyl protochlo 44.0 46 0.001 28.9 4.9 58 118-176 59-145 (390)
324 PLN02166 dTDP-glucose 4,6-dehy 43.4 85 0.0018 27.8 6.6 57 118-177 119-194 (436)
325 cd01492 Aos1_SUMO Ubiquitin ac 43.4 62 0.0013 25.4 5.2 48 91-148 3-55 (197)
326 KOG2671|consensus 42.8 46 0.00099 29.1 4.5 32 117-148 207-240 (421)
327 PF13460 NAD_binding_10: NADH( 42.4 71 0.0015 23.8 5.3 55 123-178 2-71 (183)
328 KOG1562|consensus 41.2 49 0.0011 28.3 4.3 79 118-196 121-229 (337)
329 COG2910 Putative NADH-flavin r 40.5 64 0.0014 25.7 4.6 56 122-178 3-73 (211)
330 KOG3790|consensus 39.9 47 0.001 29.8 4.2 30 119-148 212-243 (529)
331 PLN02206 UDP-glucuronate decar 39.1 98 0.0021 27.5 6.3 57 118-177 118-193 (442)
332 PF11899 DUF3419: Protein of u 38.7 25 0.00054 30.8 2.4 47 150-196 276-327 (380)
333 PLN02427 UDP-apiose/xylose syn 38.0 51 0.0011 28.3 4.2 58 119-177 14-96 (386)
334 cd08232 idonate-5-DH L-idonate 37.1 2.4E+02 0.0052 23.3 8.2 31 118-148 165-200 (339)
335 PRK08223 hypothetical protein; 37.1 1.5E+02 0.0033 24.9 6.7 30 119-148 27-61 (287)
336 TIGR02622 CDP_4_6_dhtase CDP-g 37.0 79 0.0017 26.6 5.2 58 119-177 4-85 (349)
337 COG0686 Ald Alanine dehydrogen 36.8 43 0.00093 28.9 3.4 78 119-196 168-261 (371)
338 PF03269 DUF268: Caenorhabditi 35.8 21 0.00045 27.7 1.2 78 119-196 2-104 (177)
339 PF10354 DUF2431: Domain of un 35.5 1.1E+02 0.0023 23.4 5.2 33 163-195 71-117 (166)
340 PRK15469 ghrA bifunctional gly 34.9 87 0.0019 26.5 5.1 78 119-196 136-219 (312)
341 COG0451 WcaG Nucleoside-diphos 34.6 71 0.0015 25.9 4.5 56 122-178 3-75 (314)
342 COG1063 Tdh Threonine dehydrog 34.2 2.1E+02 0.0045 24.4 7.4 73 119-196 169-262 (350)
343 COG0031 CysK Cysteine synthase 33.5 2.3E+02 0.0049 24.1 7.2 29 120-148 170-206 (300)
344 PF05050 Methyltransf_21: Meth 32.4 34 0.00074 25.0 2.0 25 124-148 1-33 (167)
345 PLN02653 GDP-mannose 4,6-dehyd 31.1 88 0.0019 26.1 4.5 58 119-177 6-93 (340)
346 PF02719 Polysacc_synt_2: Poly 31.0 55 0.0012 27.7 3.2 60 128-187 6-102 (293)
347 PF04072 LCM: Leucine carboxyl 31.0 2.4E+02 0.0052 21.5 7.2 65 120-184 80-174 (183)
348 COG1748 LYS9 Saccharopine dehy 30.9 1E+02 0.0022 27.2 4.9 56 120-177 2-78 (389)
349 COG0569 TrkA K+ transport syst 30.7 1E+02 0.0023 24.6 4.7 54 121-174 2-73 (225)
350 PRK07417 arogenate dehydrogena 30.5 74 0.0016 26.2 3.9 73 121-196 2-84 (279)
351 TIGR01472 gmd GDP-mannose 4,6- 30.4 97 0.0021 25.9 4.7 56 121-177 2-88 (343)
352 KOG0024|consensus 30.4 69 0.0015 27.7 3.6 40 109-148 160-204 (354)
353 cd01842 SGNH_hydrolase_like_5 29.5 67 0.0015 25.2 3.2 33 163-195 46-91 (183)
354 COG1087 GalE UDP-glucose 4-epi 29.4 83 0.0018 26.9 3.9 56 121-177 2-77 (329)
355 PF05711 TylF: Macrocin-O-meth 29.2 1.3E+02 0.0028 24.7 5.0 30 119-148 75-113 (248)
356 PF02086 MethyltransfD12: D12 28.5 77 0.0017 25.3 3.6 42 104-148 9-52 (260)
357 PLN02214 cinnamoyl-CoA reducta 28.4 1.8E+02 0.0038 24.6 5.9 58 119-177 10-91 (342)
358 KOG1227|consensus 28.1 34 0.00075 29.2 1.4 30 119-148 195-228 (351)
359 cd01065 NAD_bind_Shikimate_DH 27.9 1.4E+02 0.003 21.7 4.6 31 118-148 18-53 (155)
360 PRK12320 hypothetical protein; 27.9 95 0.0021 29.6 4.5 56 121-177 2-70 (699)
361 PRK09496 trkA potassium transp 27.8 86 0.0019 27.5 4.0 54 119-174 231-304 (453)
362 KOG2014|consensus 27.8 1.7E+02 0.0037 25.0 5.5 39 88-136 10-50 (331)
363 PRK08818 prephenate dehydrogen 27.7 96 0.0021 27.1 4.2 69 119-196 4-81 (370)
364 PRK09548 PTS system ascorbate- 27.5 72 0.0016 29.8 3.5 18 118-136 505-522 (602)
365 KOG2782|consensus 27.4 24 0.00052 28.8 0.4 42 104-148 32-77 (303)
366 PF07279 DUF1442: Protein of u 27.2 3.1E+02 0.0067 22.2 6.6 46 101-148 26-79 (218)
367 PRK12480 D-lactate dehydrogena 26.9 70 0.0015 27.3 3.2 77 119-196 146-227 (330)
368 PRK14851 hypothetical protein; 26.9 1.7E+02 0.0037 27.8 5.9 30 119-148 43-77 (679)
369 cd08230 glucose_DH Glucose deh 26.9 1.2E+02 0.0025 25.6 4.6 72 118-196 172-262 (355)
370 PRK03659 glutathione-regulated 26.8 77 0.0017 29.4 3.6 52 121-174 402-471 (601)
371 KOG2078|consensus 26.4 9.4 0.0002 34.0 -2.2 32 117-148 248-281 (495)
372 PF12242 Eno-Rase_NADH_b: NAD( 26.1 2.1E+02 0.0045 19.2 4.9 41 106-146 25-72 (78)
373 PRK10458 DNA cytosine methylas 26.0 1.4E+02 0.003 27.0 5.0 30 119-148 88-120 (467)
374 cd08234 threonine_DH_like L-th 26.0 1.4E+02 0.003 24.6 4.8 32 117-148 158-194 (334)
375 KOG1430|consensus 25.8 1.5E+02 0.0032 25.9 5.0 43 119-162 4-68 (361)
376 COG0270 Dcm Site-specific DNA 25.7 1.2E+02 0.0026 25.8 4.4 56 119-174 3-74 (328)
377 PRK08125 bifunctional UDP-gluc 25.4 1.2E+02 0.0025 28.4 4.6 59 118-177 314-392 (660)
378 PRK13243 glyoxylate reductase; 24.8 53 0.0011 28.0 2.1 31 119-149 150-184 (333)
379 PRK00115 hemE uroporphyrinogen 24.4 2.7E+02 0.0058 23.7 6.4 30 119-148 239-270 (346)
380 KOG1371|consensus 24.4 73 0.0016 27.5 2.7 58 120-177 3-87 (343)
381 PLN02572 UDP-sulfoquinovose sy 23.9 1.4E+02 0.003 26.4 4.6 26 119-145 47-78 (442)
382 cd00717 URO-D Uroporphyrinogen 23.9 3.1E+02 0.0067 23.1 6.6 42 105-148 218-261 (335)
383 PLN02240 UDP-glucose 4-epimera 23.7 1.6E+02 0.0035 24.5 4.9 58 119-177 5-91 (352)
384 KOG1115|consensus 23.5 53 0.0012 29.2 1.8 53 121-174 220-277 (516)
385 TIGR00872 gnd_rel 6-phosphoglu 23.5 88 0.0019 26.1 3.1 74 121-196 2-86 (298)
386 PLN00141 Tic62-NAD(P)-related 23.4 2.1E+02 0.0045 22.7 5.2 59 119-177 17-95 (251)
387 COG1568 Predicted methyltransf 23.1 1.1E+02 0.0023 26.1 3.4 53 118-172 152-226 (354)
388 PLN03209 translocon at the inn 22.8 1.2E+02 0.0027 28.2 4.1 59 118-177 79-169 (576)
389 COG0771 MurD UDP-N-acetylmuram 22.3 3.7E+02 0.0081 24.2 6.9 59 119-179 7-81 (448)
390 TIGR01464 hemE uroporphyrinoge 22.2 3.1E+02 0.0068 23.1 6.3 30 119-148 233-264 (338)
391 cd01491 Ube1_repeat1 Ubiquitin 21.9 2.5E+02 0.0054 23.6 5.5 30 119-148 19-53 (286)
392 CHL00194 ycf39 Ycf39; Provisio 21.8 2E+02 0.0044 23.8 5.0 55 121-176 2-73 (317)
393 COG0287 TyrA Prephenate dehydr 21.6 1.6E+02 0.0034 24.7 4.2 75 120-196 4-91 (279)
394 PRK14852 hypothetical protein; 21.6 2.6E+02 0.0057 27.9 6.2 30 119-148 332-366 (989)
395 COG0863 DNA modification methy 21.5 2E+02 0.0043 23.4 4.9 46 102-148 207-254 (302)
396 PRK11064 wecC UDP-N-acetyl-D-m 21.3 1.4E+02 0.003 26.4 4.0 30 120-149 4-37 (415)
397 PLN02260 probable rhamnose bio 21.2 2.3E+02 0.005 26.4 5.7 58 119-177 6-90 (668)
398 PRK06179 short chain dehydroge 21.2 2.5E+02 0.0055 22.3 5.4 58 119-177 4-83 (270)
399 PRK03562 glutathione-regulated 20.8 1.1E+02 0.0023 28.6 3.4 56 120-175 401-472 (621)
400 PLN02989 cinnamyl-alcohol dehy 20.8 2.1E+02 0.0044 23.6 4.9 58 119-177 5-87 (325)
401 PF00107 ADH_zinc_N: Zinc-bind 20.5 1.4E+02 0.003 20.8 3.3 54 137-196 13-82 (130)
402 KOG2912|consensus 20.3 2.7E+02 0.0058 24.3 5.3 27 122-148 106-136 (419)
403 COG0416 PlsX Fatty acid/phosph 20.2 1E+02 0.0022 26.6 2.8 22 154-175 209-230 (338)
No 1
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=100.00 E-value=1.2e-43 Score=278.27 Aligned_cols=150 Identities=60% Similarity=1.010 Sum_probs=117.9
Q ss_pred HHHHHHHhHhccCCccchhhhccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEE
Q psy10644 45 PLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIAD 124 (196)
Q Consensus 45 ~~~~~~~~~~~~~~fr~~ne~~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILD 124 (196)
+||++|+++|.|++||||||++|++.++++.++|.++|++|+.||+||++|+.+||.+|++.++++|...+. +..|.|
T Consensus 1 ~L~~~m~~kL~gsrFR~lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~--~~viaD 78 (219)
T PF05148_consen 1 SLQEKMREKLSGSRFRWLNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPK--SLVIAD 78 (219)
T ss_dssp -------HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-T--TS-EEE
T ss_pred ChHHHHHHHcccCchHHHHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCC--CEEEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999987654 789999
Q ss_pred EcCCCchhHhhcc-CCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 125 LGCGEAKLAAELT-QHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 125 lGCG~G~~a~~l~-~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
+|||.+.++..+. +.+|+++|+.+.+..++.||+.++|++++++|+||+|++||++|+..+|.|++|+||||
T Consensus 79 ~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 79 FGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPG 151 (219)
T ss_dssp ES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEE
T ss_pred CCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccC
Confidence 9999999999984 45899999999999999999999999999999999999999999999999999999986
No 2
>KOG3045|consensus
Probab=100.00 E-value=1.6e-41 Score=272.05 Aligned_cols=152 Identities=61% Similarity=1.002 Sum_probs=146.0
Q ss_pred CChHHHHHHHhHhccCCccchhhhccCCChHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCE
Q psy10644 42 KHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLV 121 (196)
Q Consensus 42 ~~~~~~~~~~~~~~~~~fr~~ne~~y~~~~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ 121 (196)
+.++|+++|+.+|.|++|||||||||+..+.+|..+|.++|..|+.||.+|+.|+..||.+|++.|++.|+.++. +..
T Consensus 106 ~~~~l~~km~~rL~ggrFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~--~~v 183 (325)
T KOG3045|consen 106 EATDLQAKMKKRLDGGRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPK--NIV 183 (325)
T ss_pred cccCHHHHHHHhhcccceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcC--ceE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999988765 789
Q ss_pred EEEEcCCCchhHhhccCCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 122 IADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 122 ILDlGCG~G~~a~~l~~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|.|+|||.+.+|... ...|+++|+.+.+.+++.||+.++|++++++|++|+|++||++|+..++.|++|+||||
T Consensus 184 IaD~GCGEakiA~~~-~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 184 IADFGCGEAKIASSE-RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPG 257 (325)
T ss_pred EEecccchhhhhhcc-ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccC
Confidence 999999999999754 56899999999999999999999999999999999999999999999999999999997
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=1.3e-18 Score=141.10 Aligned_cols=79 Identities=28% Similarity=0.380 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
++.+|||||||||.++..+ ...+|+++|+|+ .++.++++|++++||++++||+|+++++|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 5899999999999999888 346999999998 248899999999999999999999999995
Q ss_pred -ccCHHHHHHHHHHhccCC
Q psy10644 179 -GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 -~~d~~~~l~e~~rvLkpg 196 (196)
..|++++|+|++||||||
T Consensus 131 nv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred cCCCHHHHHHHHHHhhcCC
Confidence 559999999999999997
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=3.8e-18 Score=138.67 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
.++.+|||+|||||.++..+ +..+|+|+|+|+ .++.++++|++++|+++++||+|+++++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 44789999999999998877 235999999999 3789999999999999999999999999
Q ss_pred cccc-CHHHHHHHHHHhccCC
Q psy10644 177 LMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~-d~~~~l~e~~rvLkpg 196 (196)
+|.. |+.++++|++|+||||
T Consensus 126 lrn~~d~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPG 146 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCC
Confidence 9755 9999999999999997
No 5
>PRK05785 hypothetical protein; Provisional
Probab=99.68 E-value=4.3e-16 Score=126.09 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc---CCeEEEEeCCCC-------CceEEEecCCCCCCCCCceeeEeecc
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAELT---QHKVHSLDLVAL-------NERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~~-------~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
.+++.+..... ++.+|||||||||.++..+. +.+|+|+|+|+. ...++++|++.+|+++++||+|++.+
T Consensus 40 ~~~~~l~~~~~-~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 40 ELVKTILKYCG-RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecC
Confidence 34444433222 26799999999999988882 469999999992 34568899999999999999999999
Q ss_pred ccccc-CHHHHHHHHHHhccC
Q psy10644 176 SLMGT-DLAACIKEANRILKL 195 (196)
Q Consensus 176 ~lh~~-d~~~~l~e~~rvLkp 195 (196)
++|+. |++++++|++|+|||
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcC
Confidence 99654 999999999999997
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.67 E-value=1.5e-16 Score=109.99 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=63.9
Q ss_pred EEEcCCCchhHhhc--c-CCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHHHHH
Q psy10644 123 ADLGCGEAKLAAEL--T-QHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLAACI 186 (196)
Q Consensus 123 LDlGCG~G~~a~~l--~-~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~~~l 186 (196)
||+|||+|..+..+ . +.+|+++|+++ .++.+..+|++.+|+++++||+|++..++|+. ++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 89999999999998 3 67999999998 35669999999999999999999999999765 999999
Q ss_pred HHHHHhccCC
Q psy10644 187 KEANRILKLG 196 (196)
Q Consensus 187 ~e~~rvLkpg 196 (196)
+|++|+||||
T Consensus 81 ~e~~rvLk~g 90 (95)
T PF08241_consen 81 REIYRVLKPG 90 (95)
T ss_dssp HHHHHHEEEE
T ss_pred HHHHHHcCcC
Confidence 9999999996
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=7.7e-16 Score=127.13 Aligned_cols=80 Identities=30% Similarity=0.346 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC------------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644 117 KGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA------------------LNERVTSCDMTRTPLKPYSVDVAVF 173 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~sfD~Vi~ 173 (196)
.++.+|||+|||+|.++..+. ..+|+|+|+|+ .++.++++|++++|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 347899999999999887762 25899999998 1467899999999999999999999
Q ss_pred ccccccc-CHHHHHHHHHHhccCC
Q psy10644 174 CLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
.+++|+. |+..+++|++|+||||
T Consensus 152 ~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 152 GYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred ecccccCCCHHHHHHHHHHHcCcC
Confidence 9999755 9999999999999997
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.66 E-value=7.3e-16 Score=130.61 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-c
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-M 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h 178 (196)
++.+|||||||+|.++..+ .+.+|+|+|+++ .++.++++|++++++++++||+|++..+| |
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 4679999999999998888 567999999997 15778889998888888899999999999 5
Q ss_pred ccCHHHHHHHHHHhccCC
Q psy10644 179 GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLkpg 196 (196)
..|+..++++++|+||||
T Consensus 211 v~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 211 VANPAEFCKSLSALTIPN 228 (322)
T ss_pred cCCHHHHHHHHHHHcCCC
Confidence 559999999999999997
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.64 E-value=3.6e-15 Score=122.02 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc-CHHH
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DLAA 184 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~~~ 184 (196)
+..+|||+|||+|.++..+ .+.+|+++|+|+ ....++++|++.+|+++++||+|++..++|+. ++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~ 121 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLST 121 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHH
Confidence 3578999999999998888 467999999998 23578899999999999999999999999765 9999
Q ss_pred HHHHHHHhccCC
Q psy10644 185 CIKEANRILKLG 196 (196)
Q Consensus 185 ~l~e~~rvLkpg 196 (196)
+|.+++|+||||
T Consensus 122 ~l~~~~~~Lk~g 133 (251)
T PRK10258 122 ALRELYRVVRPG 133 (251)
T ss_pred HHHHHHHHcCCC
Confidence 999999999997
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=1.6e-15 Score=124.59 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeE
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVA 171 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~V 171 (196)
...+++.+ ...++.+|||||||+|.++..+ ++.+|+|+|+|+ .++.++.+|++.++ ++++||+|
T Consensus 18 ~~~ll~~l---~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 18 FYDLLARV---GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHHHhC---CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEE
Confidence 34444444 3345789999999999998888 256999999998 46889999998775 56799999
Q ss_pred eeccccccc-CHHHHHHHHHHhccCC
Q psy10644 172 VFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
++..++|+. ++..++++++++||||
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCC
Confidence 999999765 9999999999999997
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=3.1e-15 Score=127.93 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
.++.+|||||||+|.++..+ .+.+|+|+|+|+ .++.++++|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 35679999999999998888 257999999998 25789999999999999999999999999
Q ss_pred -cccCHHHHHHHHHHhccCC
Q psy10644 178 -MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 -h~~d~~~~l~e~~rvLkpg 196 (196)
|..|...++++++|+||||
T Consensus 197 ~h~~d~~~~l~e~~rvLkpG 216 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPG 216 (340)
T ss_pred hccCCHHHHHHHHHHHcCCC
Confidence 5559999999999999997
No 12
>KOG1540|consensus
Probab=99.62 E-value=5.3e-15 Score=119.45 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=74.0
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----c------CCeEEEEeCCC------------------CCceEEEecCCCCCCCCC
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----T------QHKVHSLDLVA------------------LNERVTSCDMTRTPLKPY 166 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~------~~~v~giDls~------------------~~~~~~~~d~~~lp~~~~ 166 (196)
.+.+++++||++||||.++..+ . +.+|+.+|+++ ..+.|+.+|++.+||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 5566899999999999998888 2 25899999999 237889999999999999
Q ss_pred ceeeEeecccc-cccCHHHHHHHHHHhccCC
Q psy10644 167 SVDVAVFCLSL-MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~~l-h~~d~~~~l~e~~rvLkpg 196 (196)
+||+.++.+.+ .+++++++|+|++||||||
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 99999999999 7889999999999999998
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=2.8e-14 Score=115.16 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=70.4
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
...++.+|||+|||+|.++..+ ...+|+|+|+++ .++.++.+|+..+++++++||+|++.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 4445789999999999998777 235999999997 25788899998888888999999999
Q ss_pred ccccc-cCHHHHHHHHHHhccCC
Q psy10644 175 LSLMG-TDLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~-~d~~~~l~e~~rvLkpg 196 (196)
+++|+ .++.++++++.|+||||
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~g 144 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPG 144 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcC
Confidence 99965 59999999999999997
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.57 E-value=1.5e-14 Score=119.53 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCc
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYS 167 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~s 167 (196)
.+.....+......++.+|||||||+|..+..+ .+++|+|+|+|+ .++.+..+|+...|+++++
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 344444444445556889999999999988877 356999999997 2578889999888999999
Q ss_pred eeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644 168 VDVAVFCLSL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 168 fD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
||+|++..++ |.. ++..+|++++++||||
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998887 544 8899999999999997
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.57 E-value=1.7e-15 Score=121.66 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC--------------CceEEEecCCCCCCCCCceeeEeecccc-ccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL--------------NERVTSCDMTRTPLKPYSVDVAVFCLSL-MGT 180 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~--------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~ 180 (196)
.+.+|||||||-|.+++.| .|..|+|+|+++. ++.+.+..++++....++||+|+|..+| |..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 5889999999999999999 6889999999992 3345566666665556899999999999 778
Q ss_pred CHHHHHHHHHHhccCC
Q psy10644 181 DLAACIKEANRILKLG 196 (196)
Q Consensus 181 d~~~~l~e~~rvLkpg 196 (196)
|+..+++.+.++||||
T Consensus 139 dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 139 DPESFLRACAKLVKPG 154 (243)
T ss_pred CHHHHHHHHHHHcCCC
Confidence 9999999999999997
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=2e-14 Score=118.12 Aligned_cols=80 Identities=26% Similarity=0.299 Sum_probs=68.9
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCC-CCCCceeeEeecccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSL 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l 177 (196)
.++.+|||+|||+|.++..+ .+.+|+++|+|+ .++.++++|+.+++ +++++||+|++..++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 34679999999999999888 567999999998 24678888887763 667899999999999
Q ss_pred ccc-CHHHHHHHHHHhccCC
Q psy10644 178 MGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~-d~~~~l~e~~rvLkpg 196 (196)
|+. ++..++.++.++||||
T Consensus 123 ~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCC
Confidence 655 9999999999999997
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=4.1e-14 Score=116.14 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=69.0
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~ 180 (196)
...++.+|||||||+|.++..+ ++.+|+|+|+|+ .++.++.+|+..+. ++++||+|++..++|+.
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWL 106 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhC
Confidence 3345789999999999998777 357999999998 46788999987764 45699999999999766
Q ss_pred -CHHHHHHHHHHhccCC
Q psy10644 181 -DLAACIKEANRILKLG 196 (196)
Q Consensus 181 -d~~~~l~e~~rvLkpg 196 (196)
+...++++++++||||
T Consensus 107 ~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 107 PDHLELFPRLVSLLAPG 123 (258)
T ss_pred CCHHHHHHHHHHhcCCC
Confidence 9999999999999997
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.55 E-value=1.7e-14 Score=109.53 Aligned_cols=78 Identities=28% Similarity=0.386 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEeecc
Q psy10644 118 GRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVFCL 175 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~ 175 (196)
++.+|||+|||+|.++..+. +.+|+|+|+++ .++.++++|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 47899999999999988883 67999999999 47899999998877 65 8999999999
Q ss_pred ccccc-CHHHHHHHHHHhccCC
Q psy10644 176 SLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh~~-d~~~~l~e~~rvLkpg 196 (196)
++|+. ++..+++++.++||+|
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPG 103 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCC
Confidence 99655 8889999999999975
No 19
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.54 E-value=1.4e-14 Score=109.65 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-----CceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL-----NERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~-----~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
+..++..+... ..++.+|||||||+|.++..+ .+.+|+|+|+++. +......+....+.++++||+|+++.+
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 44444444321 234789999999999999998 5569999999983 344455545555667899999999999
Q ss_pred cccc-CHHHHHHHHHHhccCC
Q psy10644 177 LMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~-d~~~~l~e~~rvLkpg 196 (196)
||+. |+..+|++++++||||
T Consensus 88 l~~~~d~~~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPG 108 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEE
T ss_pred HhhcccHHHHHHHHHHhcCCC
Confidence 9655 9999999999999986
No 20
>KOG4300|consensus
Probab=99.52 E-value=7e-14 Score=109.86 Aligned_cols=78 Identities=26% Similarity=0.299 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCce-EEEecCCCCC-CCCCceeeEeeccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNER-VTSCDMTRTP-LKPYSVDVAVFCLSLM 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~-~~~~d~~~lp-~~~~sfD~Vi~~~~lh 178 (196)
...+|+||||||..-.+. ++++|+++|.++ .++. |++++.+++| ++++++|+||+.++|.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 457899999999988887 577999999998 3444 8899999998 9999999999999995
Q ss_pred -ccCHHHHHHHHHHhccCC
Q psy10644 179 -GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 -~~d~~~~l~e~~rvLkpg 196 (196)
..|+.+.|+|+.|+||||
T Consensus 157 Sve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred ccCCHHHHHHHHHHhcCCC
Confidence 559999999999999997
No 21
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=5e-14 Score=113.32 Aligned_cols=92 Identities=29% Similarity=0.408 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------CCceEEEecCCCCCCCCCcee
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYSVD 169 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~sfD 169 (196)
..+++.+.........+|||||||+|.++..+ ...+|+++|+++ .++.++.+|++..++++++||
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 100 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFD 100 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCcee
Confidence 34445554333233578999999999988777 345799999997 257889999999998889999
Q ss_pred eEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644 170 VAVFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 170 ~Vi~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+|++..++|+. ++..++.+++++||||
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence 99999999766 9999999999999997
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=1.2e-13 Score=109.59 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCC
Q psy10644 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPL 163 (196)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~ 163 (196)
..+...+++.+.. .++.+|||+|||+|.++..| .+.+|+|+|+|+ .++.+.+.|+..+++
T Consensus 16 ~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~ 92 (197)
T PRK11207 16 TRTHSEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF 92 (197)
T ss_pred CCChHHHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc
Confidence 3445566666532 23679999999999999988 467999999998 246788888887777
Q ss_pred CCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 164 KPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 164 ~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
+ ++||+|++..++|+. +...++++++++||||
T Consensus 93 ~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 93 D-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred C-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 4 579999999999754 5789999999999997
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=1e-13 Score=117.73 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
..+.+|||||||+|.++..+ .+ ..|+|+|+|+ .++.++.+|++.+|+ ++.||+|+|..++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 45689999999999998888 23 3699999988 257888899999988 7899999999999
Q ss_pred cc-cCHHHHHHHHHHhccCC
Q psy10644 178 MG-TDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~-~d~~~~l~e~~rvLkpg 196 (196)
|+ .++..+|++++++||||
T Consensus 200 ~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred hccCCHHHHHHHHHHhcCCC
Confidence 54 59999999999999997
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=2.8e-13 Score=120.47 Aligned_cols=81 Identities=22% Similarity=0.185 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644 116 SKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL- 177 (196)
Q Consensus 116 ~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l- 177 (196)
..++.+|||||||+|.++..+ .+++|+|+|+|+ .++.+..+|+...++++++||+|++..++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 345789999999999887766 367999999996 25788899998888888999999999999
Q ss_pred cccCHHHHHHHHHHhccCC
Q psy10644 178 MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLkpg 196 (196)
|..++..++++++|+||||
T Consensus 344 h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred ccCCHHHHHHHHHHHcCCC
Confidence 5669999999999999997
No 25
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.45 E-value=1.7e-13 Score=107.16 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------CCceEEEecCCC-C-CCCCCceee
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------LNERVTSCDMTR-T-PLKPYSVDV 170 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------~~~~~~~~d~~~-l-p~~~~sfD~ 170 (196)
...+.+++ . ++.+|||||||.|.+...| .+.+.+|+|+++ ..+.++++|++. + .|++++||.
T Consensus 4 ~~~I~~~I---~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 4 LQIIAEWI---E--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHHc---C--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccE
Confidence 34455555 3 3889999999999999999 567899999999 578899999965 5 489999999
Q ss_pred Eeecccc-cccCHHHHHHHHHHhccC
Q psy10644 171 AVFCLSL-MGTDLAACIKEANRILKL 195 (196)
Q Consensus 171 Vi~~~~l-h~~d~~~~l~e~~rvLkp 195 (196)
||++.+| +..++...|+|+.|+-|.
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRVGRR 104 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHhcCe
Confidence 9999999 666999999999998663
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=5.2e-13 Score=106.52 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccccc---C
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---D 181 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d 181 (196)
+.+|||||||+|.++..| .+.+|+|+|+|+ .++.+..+|+.. |+++++||+|++..+||+. +
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~ 122 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDN 122 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHH
Confidence 678999999999988877 357999999998 357788889877 8889999999999999443 4
Q ss_pred HHHHHHHHHHhcc
Q psy10644 182 LAACIKEANRILK 194 (196)
Q Consensus 182 ~~~~l~e~~rvLk 194 (196)
..+++++++|+++
T Consensus 123 ~~~~l~el~r~~~ 135 (204)
T TIGR03587 123 LPTAYRELYRCSN 135 (204)
T ss_pred HHHHHHHHHhhcC
Confidence 6789999999875
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.44 E-value=5.5e-13 Score=105.53 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------C--CceEEEecCCCCCCCC
Q psy10644 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------L--NERVTSCDMTRTPLKP 165 (196)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~--~~~~~~~d~~~lp~~~ 165 (196)
.....+++.+... ++.+|||+|||+|.++..+ .+.+|+|+|+|+ . ++.+..+|+...+++
T Consensus 17 ~~~~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 17 TTHSAVREAVKTV---APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN- 92 (195)
T ss_pred CchHHHHHHhccC---CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-
Confidence 4455666665432 2569999999999999888 567999999998 1 355667777666664
Q ss_pred CceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 166 YSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 166 ~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
++||+|++..++|+. +...++++++|+||||
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 579999999999754 5678999999999997
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.44 E-value=3.1e-13 Score=115.21 Aligned_cols=79 Identities=27% Similarity=0.283 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccc-cc
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM-GT 180 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh-~~ 180 (196)
++.+|||||||+|.++..+ .+.+|+++|+++ .++.++.+|++++++++++||+|+++.++| ..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 4679999999999987766 346899999987 367889999999999999999999999995 55
Q ss_pred CHHHHHHHHHHhccCC
Q psy10644 181 DLAACIKEANRILKLG 196 (196)
Q Consensus 181 d~~~~l~e~~rvLkpg 196 (196)
+...+|++++|+||||
T Consensus 193 d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 193 DPQRGIKEAYRVLKIG 208 (340)
T ss_pred CHHHHHHHHHHhcCCC
Confidence 9999999999999997
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.44 E-value=2.8e-13 Score=97.01 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecC-CCCCCCCCceeeEeecc-
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDM-TRTPLKPYSVDVAVFCL- 175 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~-~~lp~~~~sfD~Vi~~~- 175 (196)
++.+|||||||+|.++..+ .+.+|+|+|+++ .++.++.+|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 3679999999999998777 567999999998 5889999999 33333 35699999999
Q ss_pred ccc-c---cCHHHHHHHHHHhccCC
Q psy10644 176 SLM-G---TDLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh-~---~d~~~~l~e~~rvLkpg 196 (196)
++| . .+...+++++++.|+||
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCC
Confidence 443 2 35788999999999996
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=1.1e-13 Score=97.99 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=61.1
Q ss_pred EEEEcCCCchhHhhc--c---C--CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccc-ccc
Q psy10644 122 IADLGCGEAKLAAEL--T---Q--HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLS-LMG 179 (196)
Q Consensus 122 ILDlGCG~G~~a~~l--~---~--~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~-lh~ 179 (196)
|||+|||+|..+..+ . + .+++|+|+|+ .++++.++|+.+++..+++||+|++... +|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999998888 2 2 6999999998 3779999999999988899999999554 743
Q ss_pred c---CHHHHHHHHHHhccCC
Q psy10644 180 T---DLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~---d~~~~l~e~~rvLkpg 196 (196)
. +...+++++.++||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 4 5788999999999986
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.43 E-value=5.9e-13 Score=112.53 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=66.4
Q ss_pred cCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
...++.+|||||||+|.++..+ .+ ..|+|+|+|+ .++.+..++++++|.. .+||+|++..
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g 196 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG 196 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence 3445789999999999987776 33 3799999988 2356777788888754 4899999999
Q ss_pred cc-cccCHHHHHHHHHHhccCC
Q psy10644 176 SL-MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~l-h~~d~~~~l~e~~rvLkpg 196 (196)
+| |..++..+|++++|+||||
T Consensus 197 vL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 197 VLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred hhhccCCHHHHHHHHHHhcCCC
Confidence 99 5559999999999999997
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.42 E-value=2.4e-13 Score=95.64 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=46.4
Q ss_pred EEEcCCCchhHhhc----cCCeEEEEeCCCC---------------CceEEEecCCCCC--CCCCceeeEeeccccccc-
Q psy10644 123 ADLGCGEAKLAAEL----TQHKVHSLDLVAL---------------NERVTSCDMTRTP--LKPYSVDVAVFCLSLMGT- 180 (196)
Q Consensus 123 LDlGCG~G~~a~~l----~~~~v~giDls~~---------------~~~~~~~d~~~lp--~~~~sfD~Vi~~~~lh~~- 180 (196)
||||||+|.++..+ +..+++|+|+|+. +......+..+.. ...++||+|+++.++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999998888 3569999999992 1122333322221 123699999999999766
Q ss_pred CHHHHHHHHHHhccCC
Q psy10644 181 DLAACIKEANRILKLG 196 (196)
Q Consensus 181 d~~~~l~e~~rvLkpg 196 (196)
++..+++.++++||||
T Consensus 81 ~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -HHHHHHHHTTT-TSS
T ss_pred hHHHHHHHHHHHcCCC
Confidence 9999999999999997
No 33
>PRK06922 hypothetical protein; Provisional
Probab=99.42 E-value=1.5e-12 Score=118.15 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC--CCCCceeeEeeccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSLM 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~lh 178 (196)
+.+|||+|||+|.++..+ ++.+|+|+|+|+ .++.++++|+.++| +++++||+|+++.++|
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 679999999999987666 467999999998 13567888988887 7889999999999886
Q ss_pred cc--------------CHHHHHHHHHHhccCC
Q psy10644 179 GT--------------DLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~--------------d~~~~l~e~~rvLkpg 196 (196)
.. +..++|++++|+||||
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 31 5688999999999997
No 34
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.41 E-value=8.2e-13 Score=109.34 Aligned_cols=80 Identities=28% Similarity=0.265 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
.++.+|||||||+|..+..+ ...+|+++|+++ .++.+..+|++.+++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 35789999999999865544 234799999988 3677888999999998899999999999
Q ss_pred cccc-CHHHHHHHHHHhccCC
Q psy10644 177 LMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~-d~~~~l~e~~rvLkpg 196 (196)
+|+. +...++++++|+||||
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpG 176 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPG 176 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCC
Confidence 9654 9999999999999997
No 35
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.40 E-value=2.1e-12 Score=103.44 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeecccccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~lh~ 179 (196)
+++.+|||||||+|.++..+ ....|+|+|+++ +++.++++|+...+ +.+++||+|++..+.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~ 129 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM 129 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc
Confidence 45779999999999998877 235899999997 57889999998753 67789999999877653
Q ss_pred c-C-----------HHHHHHHHHHhccCC
Q psy10644 180 T-D-----------LAACIKEANRILKLG 196 (196)
Q Consensus 180 ~-d-----------~~~~l~e~~rvLkpg 196 (196)
. + ...+|.+++++||||
T Consensus 130 ~g~~~~d~~~~~~~~~~~L~~~~~~LkpG 158 (209)
T PRK11188 130 SGTPAVDIPRAMYLVELALDMCRDVLAPG 158 (209)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 2 146899999999997
No 36
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.39 E-value=1.4e-12 Score=108.29 Aligned_cols=85 Identities=21% Similarity=0.351 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c---CCeEEEEeCCC----------CCceEEEecCCCCCCCCCce
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----T---QHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSV 168 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~---~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sf 168 (196)
.+.+.+.........+|||+|||+|.++..+ . +..|+|+|+|+ .++.+.++|+.++|+++++|
T Consensus 73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCce
Confidence 3444454433334578999999999988776 1 23799999998 46789999999999999999
Q ss_pred eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 169 DVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|+|++.++ ...++|++|+||||
T Consensus 153 D~I~~~~~------~~~~~e~~rvLkpg 174 (272)
T PRK11088 153 DAIIRIYA------PCKAEELARVVKPG 174 (272)
T ss_pred eEEEEecC------CCCHHHHHhhccCC
Confidence 99998765 23468999999997
No 37
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=3.2e-12 Score=102.62 Aligned_cols=82 Identities=26% Similarity=0.275 Sum_probs=70.4
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
...++.+|||+|||+|.++..+ +..+|+|+|+++ .++.+..+|+..++++++.||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 3345789999999999998777 246899999997 357788899988888889999999999
Q ss_pred ccc-ccCHHHHHHHHHHhccCC
Q psy10644 176 SLM-GTDLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh-~~d~~~~l~e~~rvLkpg 196 (196)
+++ ..++..++++++++||||
T Consensus 96 ~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 96 VLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred hhhccCCHHHHHHHHHHHhcCC
Confidence 995 559999999999999997
No 38
>KOG1270|consensus
Probab=99.38 E-value=5.5e-13 Score=108.28 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC---------------------CceEEEecCCCCCCCCCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL---------------------NERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~---------------------~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
+++|||+|||+|.+++.| .+..|+|+|+++. .+++...+++.+. +.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 478999999999999999 6789999999981 2334444554432 3499999999
Q ss_pred cc-cccCHHHHHHHHHHhccCC
Q psy10644 176 SL-MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~l-h~~d~~~~l~e~~rvLkpg 196 (196)
++ |..|+..++..+.+.||||
T Consensus 167 vleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCCC
Confidence 99 6669999999999999997
No 39
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=3e-12 Score=104.80 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 117 KGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
.++.+|||||||+|.++..+ ++.+|+|+|+|+ .++.++++|+..+|++ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 35789999999999987655 356999999998 2578899999888765 48999999
Q ss_pred cccccc---CHHHHHHHHHHhccCC
Q psy10644 175 LSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
.++|+. +...++++++++||||
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 999755 3568999999999997
No 40
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=2.4e-12 Score=104.67 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 117 KGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
.++.+|||||||+|.++..+ ++++|+|+|+|+ .++.++.+|+..++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 34679999999999987655 356899999997 2468899999888875 48999999
Q ss_pred cccccc---CHHHHHHHHHHhccCC
Q psy10644 175 LSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
+++|+. +...++++++|+||||
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999654 5688999999999997
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.37 E-value=3e-12 Score=103.73 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCchhHhhcc--------CCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAELT--------QHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~--------~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
++.+|||||||+|.++..|. +.+|+|+|+++ .++.+...+...++.++++||+|++++++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 46799999999999877762 24899999998 24667777777777778899999999999
Q ss_pred ccc-C--HHHHHHHHHHhccC
Q psy10644 178 MGT-D--LAACIKEANRILKL 195 (196)
Q Consensus 178 h~~-d--~~~~l~e~~rvLkp 195 (196)
|+. + ...++++++|++|.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred ecCChHHHHHHHHHHHHhcCe
Confidence 755 4 45799999999874
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.37 E-value=2.3e-12 Score=101.65 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------CCceEEEecCCC-C-CCCCCceeeEeeccccccc-CHHH
Q psy10644 119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------LNERVTSCDMTR-T-PLKPYSVDVAVFCLSLMGT-DLAA 184 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------~~~~~~~~d~~~-l-p~~~~sfD~Vi~~~~lh~~-d~~~ 184 (196)
+.+|||||||+|.++..+ .+..++|+|+++ .++.++.+|+.. + ++++++||+|++..++|+. ++..
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~ 93 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEE 93 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHH
Confidence 679999999999998877 345789999997 367888899865 4 4778899999999999655 9999
Q ss_pred HHHHHHHhccC
Q psy10644 185 CIKEANRILKL 195 (196)
Q Consensus 185 ~l~e~~rvLkp 195 (196)
+++++.|++++
T Consensus 94 ~l~e~~r~~~~ 104 (194)
T TIGR02081 94 ILDEMLRVGRH 104 (194)
T ss_pred HHHHHHHhCCe
Confidence 99999999875
No 43
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.36 E-value=4.3e-12 Score=101.89 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=75.5
Q ss_pred cCC-CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-------------------------
Q psy10644 98 QWP-INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL------------------------- 149 (196)
Q Consensus 98 ~w~-~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~------------------------- 149 (196)
.|. ..|...+.+++......++.+|||+|||.|..+..| .|++|+|+|+|+.
T Consensus 13 ~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 92 (213)
T TIGR03840 13 GFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYR 92 (213)
T ss_pred CCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeee
Confidence 453 345556666665543234679999999999999999 6789999999982
Q ss_pred --CceEEEecCCCCCCC-CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 150 --NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 150 --~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
++.+.++|+.+++.. .+.||.|+.+.++|+. ....+++.+.++||||
T Consensus 93 ~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred cCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 256788998877643 4579999998887543 5677999999999997
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=2.2e-11 Score=98.02 Aligned_cols=79 Identities=28% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCchhHhhc---c--CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL---T--QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l---~--~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
++.+|||+|||+|.++..+ . ..+|+++|+++ .++.++.+|+..++++.+.||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4689999999999998777 2 37999999987 2467888898888887889999999999
Q ss_pred cccc-CHHHHHHHHHHhccCC
Q psy10644 177 LMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~-d~~~~l~e~~rvLkpg 196 (196)
+|.. ++..++.++.++|+||
T Consensus 131 l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred cccCCCHHHHHHHHHHhccCC
Confidence 9655 9999999999999987
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.35 E-value=2.9e-12 Score=106.43 Aligned_cols=81 Identities=23% Similarity=0.206 Sum_probs=60.2
Q ss_pred hhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644 113 ERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF 173 (196)
Q Consensus 113 ~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~ 173 (196)
+...+++.+|||||||.|.++..+ .+++|+|+.+|+ ..+.+..+|..+++. +||.|++
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvS 133 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVS 133 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEE
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEE
Confidence 334566899999999999999998 378999999998 357788888877654 9999999
Q ss_pred cccc-cc--cCHHHHHHHHHHhccCC
Q psy10644 174 CLSL-MG--TDLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~l-h~--~d~~~~l~e~~rvLkpg 196 (196)
..++ |. .++..+|+++.++||||
T Consensus 134 i~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 134 IEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred EechhhcChhHHHHHHHHHHHhcCCC
Confidence 9999 75 38999999999999997
No 46
>KOG3010|consensus
Probab=99.35 E-value=1.6e-12 Score=104.41 Aligned_cols=95 Identities=24% Similarity=0.250 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccC--CeEEEEeCCC---------CCce-------EEEecCCCC
Q psy10644 100 PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HKVHSLDLVA---------LNER-------VTSCDMTRT 161 (196)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~--~~v~giDls~---------~~~~-------~~~~d~~~l 161 (196)
|..|.+.+-... ..... ...++|+|||+|..++.+.. .+|+|+|+|+ .++. +...++..|
T Consensus 17 P~YPtdw~~~ia-~~~~~-h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 17 PSYPTDWFKKIA-SRTEG-HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL 94 (261)
T ss_pred CCCcHHHHHHHH-hhCCC-cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc
Confidence 445544444333 33321 22789999999987777744 3899999998 1222 222223333
Q ss_pred CCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 162 PLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 162 p~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
--.++++|+|++..++|+.|.+.++++++|+||+.
T Consensus 95 ~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKD 129 (261)
T ss_pred cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCC
Confidence 33489999999999999999999999999999974
No 47
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=3.8e-12 Score=106.41 Aligned_cols=77 Identities=25% Similarity=0.303 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc--
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-- 180 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-- 180 (196)
+.+|||||||+|.++..+ .+.+|+|+|+|+ .++.+...|+...++ +++||+|++..++|+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 459999999999999888 567999999998 256677788876655 6789999999999754
Q ss_pred -CHHHHHHHHHHhccCC
Q psy10644 181 -DLAACIKEANRILKLG 196 (196)
Q Consensus 181 -d~~~~l~e~~rvLkpg 196 (196)
+...+++++.++||||
T Consensus 200 ~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPG 216 (287)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 5778999999999997
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=3.6e-12 Score=102.41 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=63.6
Q ss_pred EEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccccc-
Q psy10644 121 VIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG- 179 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~- 179 (196)
+|||||||+|.++..+ .+.+|+|+|+|+ .++.++.+|+...|++ ++||+|++..++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 6999999999988777 356999999997 2468888888666664 58999999999954
Q ss_pred cCHHHHHHHHHHhccCC
Q psy10644 180 TDLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~d~~~~l~e~~rvLkpg 196 (196)
.++..+|++++++||||
T Consensus 81 ~~~~~~l~~~~~~Lkpg 97 (224)
T smart00828 81 KDKMDLFSNISRHLKDG 97 (224)
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 49999999999999997
No 49
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.30 E-value=4.7e-11 Score=95.14 Aligned_cols=79 Identities=29% Similarity=0.482 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchhHhhc---cC--CeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL---TQ--HKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l---~~--~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
++.+|||+|||+|.++..+ .+ .+++++|+++ .++.+..+|+.+++++++.||+|++..++|.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 4789999999999998777 12 4899999987 2578889999888888889999999999965
Q ss_pred c-CHHHHHHHHHHhccCC
Q psy10644 180 T-DLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~-d~~~~l~e~~rvLkpg 196 (196)
. ++..+++++.++|+||
T Consensus 119 ~~~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPG 136 (223)
T ss_pred cccHHHHHHHHHHHcCCC
Confidence 5 9999999999999997
No 50
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.29 E-value=2.1e-11 Score=98.18 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=76.3
Q ss_pred cCC-CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC-------------------------
Q psy10644 98 QWP-INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL------------------------- 149 (196)
Q Consensus 98 ~w~-~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~------------------------- 149 (196)
.|. ..+...+.+++......++.+|||+|||.|..+..| .|++|+|+|+|+.
T Consensus 16 ~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~ 95 (218)
T PRK13255 16 GFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQ 95 (218)
T ss_pred CCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccc
Confidence 453 556666777665443344679999999999999999 6889999999981
Q ss_pred --CceEEEecCCCCCCC-CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 150 --NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 150 --~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
++.+.++|+.+++.. .+.||+|+...++|.. ....++..+.++||||
T Consensus 96 ~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 96 AGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred cCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 245678888776533 2589999998888543 5678999999999997
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=1.1e-11 Score=97.69 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
+.+|||||||+|..+..+ .+.+|+++|+++ .++.++.+|+.+++. +++||+|++.. .
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---~ 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---V 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---c
Confidence 789999999999987766 467999999998 358899999988776 77999999864 2
Q ss_pred cCHHHHHHHHHHhccCC
Q psy10644 180 TDLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~d~~~~l~e~~rvLkpg 196 (196)
.++..++++++++||||
T Consensus 122 ~~~~~~l~~~~~~LkpG 138 (187)
T PRK00107 122 ASLSDLVELCLPLLKPG 138 (187)
T ss_pred cCHHHHHHHHHHhcCCC
Confidence 47889999999999997
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=1.2e-11 Score=110.03 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCC--CCCCCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMT--RTPLKPY 166 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~--~lp~~~~ 166 (196)
...+++.+ ...++.+|||||||+|.++..| ...+|+|+|+++ .++.++++|+. .++++++
T Consensus 26 ~~~il~~l---~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLL---PPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhc---CccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34444444 2233669999999999999988 345999999998 25778889985 4678889
Q ss_pred ceeeEeeccccccc-C--HHHHHHHHHHhccCC
Q psy10644 167 SVDVAVFCLSLMGT-D--LAACIKEANRILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~~lh~~-d--~~~~l~e~~rvLkpg 196 (196)
+||+|++..++|+. + ...++++++|+||||
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999654 3 678999999999997
No 53
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.5e-11 Score=101.93 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=68.2
Q ss_pred HhhcCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEe
Q psy10644 112 QERESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAV 172 (196)
Q Consensus 112 ~~~~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi 172 (196)
.++...++++|||||||.|.++..+ -+.+|+|+++|+ .+++++..|...+. +.||-|+
T Consensus 66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIv 142 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIV 142 (283)
T ss_pred HhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceee
Confidence 3445567999999999999998888 367999999998 26777777776654 3499999
Q ss_pred ecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644 173 FCLSL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~~~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
+..++ |.. ++..+|+.++++|+||
T Consensus 143 SvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 143 SVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred ehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 99999 643 7999999999999997
No 54
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=1.8e-11 Score=98.21 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCC
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPY 166 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~ 166 (196)
..+++++.. ...++.+|||+|||+|.++..+ .+.+|+|+|+++ .++.+.++|+..++ +
T Consensus 43 ~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~ 118 (219)
T TIGR02021 43 RKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---G 118 (219)
T ss_pred HHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---C
Confidence 334445532 1234789999999999999888 456999999998 15778888887765 7
Q ss_pred ceeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644 167 SVDVAVFCLSL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
+||+|++..++ |.. +...+++++.++++++
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 89999999998 443 5778999999998874
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=8.9e-12 Score=99.18 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecC-CCCC--CCCCceeeEeecc
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDM-TRTP--LKPYSVDVAVFCL 175 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~-~~lp--~~~~sfD~Vi~~~ 175 (196)
++.+|||||||+|.++..+ ++.+|+|+|+++ .++.++++|+ +.++ +++++||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4679999999999988777 346899999998 3678999998 7776 7788999999876
Q ss_pred ccccc---------CHHHHHHHHHHhccCC
Q psy10644 176 SLMGT---------DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh~~---------d~~~~l~e~~rvLkpg 196 (196)
...+. ....++++++++||||
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 54221 2578999999999997
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.27 E-value=2.6e-11 Score=95.05 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
+.+|||||||+|.++..+ ...+|+++|.++ .++.++.+|+++++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 679999999999887766 346899999998 36788999998874 367999998865 3
Q ss_pred cCHHHHHHHHHHhccCC
Q psy10644 180 TDLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~d~~~~l~e~~rvLkpg 196 (196)
.+...+++.++++||||
T Consensus 119 ~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 119 ASLNVLLELTLNLLKVG 135 (181)
T ss_pred hCHHHHHHHHHHhcCCC
Confidence 35677889999999997
No 57
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=5.8e-12 Score=104.26 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCch----hHhhc----c-----CCeEEEEeCCC-------C----------------------------
Q psy10644 118 GRLVIADLGCGEAK----LAAEL----T-----QHKVHSLDLVA-------L---------------------------- 149 (196)
Q Consensus 118 ~~~~ILDlGCG~G~----~a~~l----~-----~~~v~giDls~-------~---------------------------- 149 (196)
++.+|+|+|||+|. ++..+ . +.+|+|+|+|+ .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 33322 2 35899999998 0
Q ss_pred -------CceEEEecCCCCCCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 150 -------NERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 150 -------~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
++.|.++|+...+++.+.||+|+|..+||+. +..+++++++++||||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 4678889998887778899999999999654 4557999999999997
No 58
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.26 E-value=2.8e-11 Score=95.41 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc--
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-- 180 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-- 180 (196)
..++||||||.|+.+.+| .|..|+++|.|+ ..+...+.|+....++ +.||+|++..++|+.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~ 109 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQR 109 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-G
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCH
Confidence 679999999999999999 788999999999 3577889999887775 689999998888544
Q ss_pred -CHHHHHHHHHHhccCC
Q psy10644 181 -DLAACIKEANRILKLG 196 (196)
Q Consensus 181 -d~~~~l~e~~rvLkpg 196 (196)
..+..++.+...|+||
T Consensus 110 ~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 110 ELRPQIIENMKAATKPG 126 (192)
T ss_dssp GGHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHhhcCCc
Confidence 5778899999999986
No 59
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.22 E-value=5e-11 Score=103.54 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=63.7
Q ss_pred cCCCCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
...++.+|||||||+|.++..+ .+++|+|+|+|+ .++.+...|...+ +++||+|++..++++
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 4456789999999999998877 367999999998 1355666676554 478999999999843
Q ss_pred c---CHHHHHHHHHHhccCC
Q psy10644 180 T---DLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~---d~~~~l~e~~rvLkpg 196 (196)
. ++..++++++++||||
T Consensus 241 vg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred CChHHHHHHHHHHHHHcCCC
Confidence 2 6789999999999997
No 60
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.22 E-value=3e-11 Score=95.76 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCc
Q psy10644 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYS 167 (196)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~s 167 (196)
.|...++..+ +......|.|||||+|..++.| +...|+|+|-|+ +++.|..+|+..+. ++..
T Consensus 17 RPa~dLla~V---p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~ 92 (257)
T COG4106 17 RPARDLLARV---PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQP 92 (257)
T ss_pred CcHHHHHhhC---CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCc
Confidence 3455555554 4444578999999999988887 678999999998 68999999998875 4678
Q ss_pred eeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644 168 VDVAVFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 168 fD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+|+++++.+||+. |....|..+...|.||
T Consensus 93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 93 TDLLFANAVLQWLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred cchhhhhhhhhhccccHHHHHHHHHhhCCC
Confidence 9999999999876 9999999999999987
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.21 E-value=5.9e-11 Score=98.78 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CC--ceEEEecCCCCCCCC
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LN--ERVTSCDMTRTPLKP 165 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~--~~~~~~d~~~lp~~~ 165 (196)
+.+...+ ..-.+.+|||||||.|.++..+ .+ ..|+|+|.++ .. +.+...-++.+|. .
T Consensus 105 ~rl~p~l---~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 105 DRLLPHL---PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHhhh---CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 4444444 2335789999999999999888 33 3799999998 12 2222245678887 7
Q ss_pred CceeeEeecccc-cccCHHHHHHHHHHhccCC
Q psy10644 166 YSVDVAVFCLSL-MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 166 ~sfD~Vi~~~~l-h~~d~~~~l~e~~rvLkpg 196 (196)
+.||+|+|..+| |-.++...|.+++..|+||
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 899999999999 7779999999999999987
No 62
>KOG1541|consensus
Probab=99.20 E-value=5.4e-11 Score=94.57 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC----------CceEEEecC-CCCCCCCCceeeEeeccccccc----
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL----------NERVTSCDM-TRTPLKPYSVDVAVFCLSLMGT---- 180 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~----------~~~~~~~d~-~~lp~~~~sfD~Vi~~~~lh~~---- 180 (196)
...-|||||||+|..+..| .++..+|+|+|+. .-.++.+|+ +.+||++++||.||+..++.|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~ 129 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD 129 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence 4678999999999999999 6789999999991 236888998 6699999999999987776211
Q ss_pred ----CH----HHHHHHHHHhccCC
Q psy10644 181 ----DL----AACIKEANRILKLG 196 (196)
Q Consensus 181 ----d~----~~~l~e~~rvLkpg 196 (196)
++ ..||..++.+|++|
T Consensus 130 ~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 130 KSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred ccccChHHHHHHHhhhhhhhhccC
Confidence 22 34678888888875
No 63
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.19 E-value=1.6e-10 Score=92.89 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCc
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYS 167 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~s 167 (196)
.+++.+......++.+|||||||+|.++..+ .+..|+|+|+++ .++.+..+|+ +..+++
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~ 127 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGR 127 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCC
Confidence 3444554322234679999999999998888 456899999997 1466777774 444688
Q ss_pred eeeEeecccc-ccc--CHHHHHHHHHHhccC
Q psy10644 168 VDVAVFCLSL-MGT--DLAACIKEANRILKL 195 (196)
Q Consensus 168 fD~Vi~~~~l-h~~--d~~~~l~e~~rvLkp 195 (196)
||+|++..++ |+. +...+++++.+++++
T Consensus 128 fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 128 FDTVVCLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred cCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 9999999999 544 566788888887654
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.18 E-value=2.2e-10 Score=83.00 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeeccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFCLS 176 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~ 176 (196)
.++.+|||+|||+|.++..+ ++.+|+++|+++ .++.++..|+.. ++...++||+|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 34679999999999998877 346999999998 256677777654 3333468999998765
Q ss_pred ccccCHHHHHHHHHHhccCC
Q psy10644 177 LMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~d~~~~l~e~~rvLkpg 196 (196)
.+ ....++++++++||||
T Consensus 98 ~~--~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 98 GG--LLQEILEAIWRRLRPG 115 (124)
T ss_pred ch--hHHHHHHHHHHHcCCC
Confidence 43 3468999999999997
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.17 E-value=4.6e-11 Score=94.45 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCC---CCCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTP---LKPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp---~~~~sfD~Vi~~~~ 176 (196)
..+|||||||+|.++..+ +...|+|+|+++ .++.++.+|+..++ ++++++|.|++.+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 568999999999998777 456999999998 37889999987643 55679999998876
Q ss_pred cccc-C--------HHHHHHHHHHhccCC
Q psy10644 177 LMGT-D--------LAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~-d--------~~~~l~e~~rvLkpg 196 (196)
.++. . ...++++++|+||||
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 5332 1 257999999999997
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.14 E-value=3.4e-10 Score=91.46 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCC-CCCCceeeEeeccccc-
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTP-LKPYSVDVAVFCLSLM- 178 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~lh- 178 (196)
.++.+|||||||+|.++..+ .+.+|+++|+++ ..+.+..+++..++ ..++.||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 34789999999999998877 456899999997 13456667766654 3457999999999995
Q ss_pred ccCHHHHHHHHHHhccCC
Q psy10644 179 GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLkpg 196 (196)
..++..+++.+.++|+||
T Consensus 127 ~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 127 VPDPASFVRACAKLVKPG 144 (233)
T ss_pred cCCHHHHHHHHHHHcCCC
Confidence 459999999999999986
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=99.12 E-value=4e-10 Score=94.21 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchhHhh------ccCCeEEEEeCCC-----------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 118 GRLVIADLGCGEAKLAAE------LTQHKVHSLDLVA-----------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~------l~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
+..+|+|||||.|.++.. +++.+++|+|+++ .++.|..+|+.+++...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 468999999997744222 2566899999998 35889999987764345789999999
Q ss_pred cccccc---CHHHHHHHHHHhccCC
Q psy10644 175 LSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
++|+. ++.++++++++.|+||
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCC
Confidence 87543 8999999999999997
No 68
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.11 E-value=5e-10 Score=87.89 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeeccccc-
Q psy10644 117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLSLM- 178 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~lh- 178 (196)
.++.+|||+|||+|.++..+ ...+|+++|+++ .++.++.+|+.+.+ ++.++||+|++..+.|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~ 110 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNI 110 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCC
Confidence 34789999999999987766 234799999999 37788888886543 4567899999854321
Q ss_pred ----cc-------CHHHHHHHHHHhccCC
Q psy10644 179 ----GT-------DLAACIKEANRILKLG 196 (196)
Q Consensus 179 ----~~-------d~~~~l~e~~rvLkpg 196 (196)
.. +...++.+++++||||
T Consensus 111 ~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg 139 (188)
T TIGR00438 111 SGYWDIDHLRSIDLVELALDIAKEVLKPK 139 (188)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence 11 2368999999999997
No 69
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=2.9e-11 Score=96.62 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhh-cCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC----------C
Q psy10644 84 SFEAYHEGFKKQVT-QWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL----------N 150 (196)
Q Consensus 84 ~f~~y~~~y~~~~~-~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~----------~ 150 (196)
.||.|.+.|.+++- +.....-..+.+.|......+-.++||+|||||..+..| ...+++|+|||.. .
T Consensus 90 LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y 169 (287)
T COG4976 90 LFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY 169 (287)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch
Confidence 78889888876542 332232233344555545444579999999999999998 3458999999982 2
Q ss_pred ceEEEecCCC-CC-CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644 151 ERVTSCDMTR-TP-LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 151 ~~~~~~d~~~-lp-~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
....+++... ++ ..++.||+|++..+|.+. +.+.++.-+...|+||
T Consensus 170 D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 170 DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence 2344455432 23 567889999999999777 9999999999999987
No 70
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=5.8e-10 Score=86.37 Aligned_cols=87 Identities=26% Similarity=0.402 Sum_probs=64.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCC
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPY 166 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~ 166 (196)
.+++.+... +..+|||+|||+|.++..+ +..+|+++|+++ .++.+..+|+.+ +++++
T Consensus 22 lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~ 97 (170)
T PF05175_consen 22 LLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDG 97 (170)
T ss_dssp HHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTT
T ss_pred HHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-ccccc
Confidence 445555443 3679999999999998888 233799999999 237788888754 34478
Q ss_pred ceeeEeeccccccc-C-----HHHHHHHHHHhccCC
Q psy10644 167 SVDVAVFCLSLMGT-D-----LAACIKEANRILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~~lh~~-d-----~~~~l~e~~rvLkpg 196 (196)
.||+|+++--+|.. + ...++.++.++||||
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 99999999877533 2 578999999999986
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=1e-09 Score=88.41 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC--------------CCceEEEecCCCCCCCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA--------------LNERVTSCDMTRTPLKPY 166 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~--------------~~~~~~~~d~~~lp~~~~ 166 (196)
...+.+.+......++.+|||+|||+|.++..+ .+. +|+++|+++ .++.++..|+.. .++++
T Consensus 22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~ 100 (223)
T PRK14967 22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFR 100 (223)
T ss_pred HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCC
Confidence 344555555444445789999999999998877 233 899999998 135667777755 35677
Q ss_pred ceeeEeeccccc-cc---------------------CHHHHHHHHHHhccCC
Q psy10644 167 SVDVAVFCLSLM-GT---------------------DLAACIKEANRILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~~lh-~~---------------------d~~~~l~e~~rvLkpg 196 (196)
+||+|+++.-.+ .. ....+++++.++||||
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 999999974331 10 1456889999999987
No 72
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=6.8e-10 Score=94.01 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCCC--------------------CceEEEecCCCCC
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVAL--------------------NERVTSCDMTRTP 162 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~~--------------------~~~~~~~d~~~lp 162 (196)
+.+++++......++.+|||||||+|.++..+ .+.+|+|+|+|+. ++.+...|++.+
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l- 209 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL- 209 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-
Confidence 34455554321123679999999999999888 5679999999981 235666666543
Q ss_pred CCCCceeeEeecccc-cccC--HHHHHHHHHHh
Q psy10644 163 LKPYSVDVAVFCLSL-MGTD--LAACIKEANRI 192 (196)
Q Consensus 163 ~~~~sfD~Vi~~~~l-h~~d--~~~~l~e~~rv 192 (196)
+++||+|+|+.++ |..+ ...+++.+.++
T Consensus 210 --~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 210 --SGKYDTVTCLDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred --CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence 5789999999998 5543 34466666654
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.06 E-value=3.8e-10 Score=90.45 Aligned_cols=79 Identities=27% Similarity=0.313 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------C-CceEEEecCCCCCCC-CCceeeEeecccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------L-NERVTSCDMTRTPLK-PYSVDVAVFCLSLMG 179 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~-~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~ 179 (196)
.+.+|||+|||+|.++..+ .+.+|+++|+++ . ++.+...|+..++.+ .++||+|++..++|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 3679999999999998877 456899999987 1 467777787766544 378999999999965
Q ss_pred c-CHHHHHHHHHHhccCC
Q psy10644 180 T-DLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~-d~~~~l~e~~rvLkpg 196 (196)
. ++..++.++.++|+||
T Consensus 125 ~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPG 142 (224)
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 5 9999999999999986
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.06 E-value=1.1e-09 Score=87.25 Aligned_cols=77 Identities=23% Similarity=0.179 Sum_probs=59.2
Q ss_pred cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF 173 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~ 173 (196)
...++.+|||||||+|..+..+. +.+|+++|+++ .++.++.+|........++||+|++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 44457899999999999876661 46999999998 1367888898765445679999999
Q ss_pred cccccccCHHHHHHHHHHhccCC
Q psy10644 174 CLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
..+++.. ..++.++||||
T Consensus 149 ~~~~~~~-----~~~l~~~L~~g 166 (205)
T PRK13944 149 TAAASTI-----PSALVRQLKDG 166 (205)
T ss_pred ccCcchh-----hHHHHHhcCcC
Confidence 9887422 24788999987
No 75
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.05 E-value=1.5e-09 Score=87.70 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHhhhhcC-CCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------
Q psy10644 90 EGFKKQVTQW-PINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------ 148 (196)
Q Consensus 90 ~~y~~~~~~w-~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------ 148 (196)
+.|.+.--.| ...+...+.+++......++.+||+.|||.|.-+..| .|++|+|+|+|+
T Consensus 14 ~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~ 93 (226)
T PRK13256 14 DRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIH 93 (226)
T ss_pred HHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceec
Confidence 3444332345 2334445556666555445689999999999999999 788999999998
Q ss_pred ---------CCceEEEecCCCCCCC---CCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 149 ---------LNERVTSCDMTRTPLK---PYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 149 ---------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
.++.+.++|+.+++.. .+.||+|+-..+|+.. ...+.++.+.++|+||
T Consensus 94 ~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 94 GNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred ccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 1568889999887642 2689999998888533 5778999999999996
No 76
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.04 E-value=7.4e-10 Score=95.80 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeecc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCL 175 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~ 175 (196)
..+..+||||||+|.++..+ +...++|+|+++ .|+.++.+|+..+ .++++++|.|++.+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34568999999999998877 457999999997 4788999998654 57889999999876
Q ss_pred ccccc-C------HHHHHHHHHHhccCC
Q psy10644 176 SLMGT-D------LAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh~~-d------~~~~l~e~~rvLkpg 196 (196)
...|. . ...++.+++|+||||
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCC
Confidence 55222 1 268999999999997
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.04 E-value=6.2e-10 Score=87.48 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=60.0
Q ss_pred cCCCCCEEEEEcCCCchhHhhccCC--eEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAELTQH--KVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l~~~--~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
+...-.++||+|||.|.++..|... +++++|+|+ +++.|.+.|+.+. .|++.||+|+++.++|+
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred CccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 4434578999999999999999433 899999998 6899999999664 57899999999999976
Q ss_pred c-C---HHHHHHHHHHhccCC
Q psy10644 180 T-D---LAACIKEANRILKLG 196 (196)
Q Consensus 180 ~-d---~~~~l~e~~rvLkpg 196 (196)
. + ...++..+...|+||
T Consensus 119 L~~~~~L~~~l~~l~~~L~pg 139 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPG 139 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 5 3 456889999999886
No 78
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.04 E-value=1.7e-09 Score=84.21 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc-C
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-D 181 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d 181 (196)
+.+|||+|||+|.++..+ .+.+|+++|+++ .++.++.+|+...+ .++||+|+++..+|.. +
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 568999999999998888 334899999998 24566777875543 4589999998776422 1
Q ss_pred ---------------------HHHHHHHHHHhccCC
Q psy10644 182 ---------------------LAACIKEANRILKLG 196 (196)
Q Consensus 182 ---------------------~~~~l~e~~rvLkpg 196 (196)
...+++++.|+||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 356899999999996
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.03 E-value=1.8e-09 Score=90.93 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
.+..+|||||||+|.++..+ ++.+++++|+.+ .++.++.+|+...+++. +|+|+++.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 44679999999999998777 456899999743 25778999987666653 6999999999
Q ss_pred cccC---HHHHHHHHHHhccCC
Q psy10644 178 MGTD---LAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d---~~~~l~e~~rvLkpg 196 (196)
|..+ ...+|++++++||||
T Consensus 226 h~~~~~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRSG 247 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCCC
Confidence 7542 357999999999997
No 80
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.02 E-value=1.3e-09 Score=94.28 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCCC------------------CceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVAL------------------NERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~~------------------~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
..+|||||||+|.++..+ +..+|+++|+|+. ++.+...|+.. .+++++||+|+|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 469999999999998887 3569999999970 34666666643 234568999999877
Q ss_pred cccc------CHHHHHHHHHHhccCC
Q psy10644 177 LMGT------DLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~------d~~~~l~e~~rvLkpg 196 (196)
+|.. ...++|++++++||||
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccC
Confidence 7632 2467899999999997
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=86.78 Aligned_cols=77 Identities=21% Similarity=0.103 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
...++.+|||||||+|.++..+ ...+|+++|+++ .++.++.+|......+.+.||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 4455889999999999998766 235999999997 36889999987655567899999987
Q ss_pred ccccccCHHHHHHHHHHhccCC
Q psy10644 175 LSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~d~~~~l~e~~rvLkpg 196 (196)
.+.+. ....+.+.||||
T Consensus 153 ~~~~~-----~~~~l~~~Lkpg 169 (212)
T PRK13942 153 AAGPD-----IPKPLIEQLKDG 169 (212)
T ss_pred CCccc-----chHHHHHhhCCC
Confidence 76532 234567789987
No 82
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.00 E-value=2.8e-09 Score=86.64 Aligned_cols=78 Identities=28% Similarity=0.345 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
.+.+|||+|||+|.++..+ +..+|+|+|+++ .++.++.+|+.. ++++++||+|+++.-++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3568999999999998877 356999999998 257888888865 45678999999853321
Q ss_pred c------c---------------------CHHHHHHHHHHhccCC
Q psy10644 179 G------T---------------------DLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~------~---------------------d~~~~l~e~~rvLkpg 196 (196)
. . ....++.++.++|+||
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 1 0 1346889999999987
No 83
>PRK04266 fibrillarin; Provisional
Probab=99.00 E-value=2.3e-09 Score=86.80 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=59.5
Q ss_pred hcCCCCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------CCceEEEecCCC----CCCCCCceeeEe
Q psy10644 114 RESKGRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------LNERVTSCDMTR----TPLKPYSVDVAV 172 (196)
Q Consensus 114 ~~~~~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------~~~~~~~~d~~~----lp~~~~sfD~Vi 172 (196)
....++.+|||+|||+|.++..+. ..+|+|+|+++ .|+.++.+|+.. .++. ++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 455568899999999999988882 34899999998 477888888864 1233 5699998
Q ss_pred eccccccc-CHHHHHHHHHHhccCC
Q psy10644 173 FCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+... .. ....++++++|+||||
T Consensus 147 ~d~~--~p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 147 QDVA--QPNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred ECCC--ChhHHHHHHHHHHHhcCCC
Confidence 5422 11 2245689999999997
No 84
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.99 E-value=4.8e-09 Score=88.36 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC--------------CC--ceEEEecCCC-CCCCCCc---eeeEe
Q psy10644 118 GRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA--------------LN--ERVTSCDMTR-TPLKPYS---VDVAV 172 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~--------------~~--~~~~~~d~~~-lp~~~~s---fD~Vi 172 (196)
++.+|||+|||+|..+..| . +.+|+++|+|+ ++ +.++++|+.. ++++... .++++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 3578999999999988777 2 57999999998 22 3557889865 4444332 23333
Q ss_pred -eccccccc---CHHHHHHHHHHhccCC
Q psy10644 173 -FCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 173 -~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
+..+++.. +...+|++++++|+||
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 33445433 5677999999999997
No 85
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.98 E-value=5.1e-10 Score=80.63 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCCCC--CCCCceeeEeecccc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~l 177 (196)
+.+|||+|||+|.++..+ .+ .+++|+|+++ .++.++++|+..+. +++++||+|+++--+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999997777 44 7999999999 35789999987764 778999999998766
Q ss_pred ccc---------CHHHHHHHHHHhccCC
Q psy10644 178 MGT---------DLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~---------d~~~~l~e~~rvLkpg 196 (196)
+.. ....+++++.++||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 321 2468899999999986
No 86
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.98 E-value=5.2e-09 Score=82.03 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
.++.+|||||||+|.++..+ ++.+|+++|+++ .++.+..+|.. .++ .++||+|++....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 34779999999999998776 346999999998 24566777763 233 3579999987654
Q ss_pred cccCHHHHHHHHHHhccCC
Q psy10644 178 MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLkpg 196 (196)
+ ....++++++++||||
T Consensus 108 ~--~~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 108 G--NLTAIIDWSLAHLHPG 124 (187)
T ss_pred c--CHHHHHHHHHHhcCCC
Confidence 2 3577899999999997
No 87
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.97 E-value=2.4e-09 Score=91.70 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~ 180 (196)
..+|||||||+|.++..+ +..+|+++|+++ ....++..|+.. ..++.||+|+++..+|..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 458999999999998887 345899999997 123456666644 235789999999888741
Q ss_pred ------CHHHHHHHHHHhccCC
Q psy10644 181 ------DLAACIKEANRILKLG 196 (196)
Q Consensus 181 ------d~~~~l~e~~rvLkpg 196 (196)
....+|+++.++||||
T Consensus 275 ~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcC
Confidence 4678999999999997
No 88
>PTZ00146 fibrillarin; Provisional
Probab=98.94 E-value=3.3e-09 Score=88.55 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=64.1
Q ss_pred HHHHhhcCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC-------------CCceEEEecCCC---CCCCCCc
Q psy10644 109 KSIQERESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA-------------LNERVTSCDMTR---TPLKPYS 167 (196)
Q Consensus 109 ~~l~~~~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~-------------~~~~~~~~d~~~---lp~~~~s 167 (196)
.-+......++.+|||+|||+|.++..+. ...|+++|+++ .|+.++.+|+.. +.+...+
T Consensus 123 ~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 123 GGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred CCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCC
Confidence 33444555678899999999999988882 35899999986 478888889753 2223458
Q ss_pred eeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 168 VDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 168 fD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
||+|++..+ ...+...++.+++++||||
T Consensus 203 vDvV~~Dva-~pdq~~il~~na~r~LKpG 230 (293)
T PTZ00146 203 VDVIFADVA-QPDQARIVALNAQYFLKNG 230 (293)
T ss_pred CCEEEEeCC-CcchHHHHHHHHHHhccCC
Confidence 999988764 2224445677999999997
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.93 E-value=5.4e-09 Score=83.82 Aligned_cols=77 Identities=22% Similarity=0.075 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
...++.+|||||||+|.++..|. ..+|+++|+++ .++.++.+|........+.||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 44567899999999999988772 23699999998 36788888986654445789999987
Q ss_pred ccccccCHHHHHHHHHHhccCC
Q psy10644 175 LSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~d~~~~l~e~~rvLkpg 196 (196)
.... .....+.+.||||
T Consensus 154 ~~~~-----~~~~~~~~~L~~g 170 (215)
T TIGR00080 154 AAGP-----KIPEALIDQLKEG 170 (215)
T ss_pred CCcc-----cccHHHHHhcCcC
Confidence 6652 2335578889987
No 90
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.92 E-value=4.9e-09 Score=71.87 Aligned_cols=76 Identities=36% Similarity=0.458 Sum_probs=62.4
Q ss_pred EEEEEcCCCchhHhhcc---CCeEEEEeCCC---------------CCceEEEecCCCCCC-CCCceeeEeecccccc-c
Q psy10644 121 VIADLGCGEAKLAAELT---QHKVHSLDLVA---------------LNERVTSCDMTRTPL-KPYSVDVAVFCLSLMG-T 180 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l~---~~~v~giDls~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~~~lh~-~ 180 (196)
+|+|+|||.|.++..+. ..+++++|+++ .++.+...|+.+... ..+.||+|++..+++. .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 48999999999987773 45999999987 356777788766543 5678999999999965 4
Q ss_pred -CHHHHHHHHHHhccCC
Q psy10644 181 -DLAACIKEANRILKLG 196 (196)
Q Consensus 181 -d~~~~l~e~~rvLkpg 196 (196)
....+++.+.++||||
T Consensus 81 ~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 81 EDLARFLEEARRLLKPG 97 (107)
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 8899999999999986
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=80.99 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=61.5
Q ss_pred hhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCC-CCCCCceee
Q psy10644 113 ERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRT-PLKPYSVDV 170 (196)
Q Consensus 113 ~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~l-p~~~~sfD~ 170 (196)
.....++.+|||+|||+|.++..+ .+.+|+++|+++ .++.++.+|+.+. +...+.||+
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCE
Confidence 334456789999999999987765 235899999998 2466777787653 333468999
Q ss_pred EeecccccccCHHHHHHHHHHhccCC
Q psy10644 171 AVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 171 Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|++... ..++..+++++.++||||
T Consensus 115 V~~~~~--~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 115 IFIGGG--SEKLKEIISASWEIIKKG 138 (198)
T ss_pred EEECCC--cccHHHHHHHHHHHcCCC
Confidence 988542 236788999999999996
No 92
>KOG2361|consensus
Probab=98.90 E-value=4.8e-09 Score=84.51 Aligned_cols=76 Identities=26% Similarity=0.376 Sum_probs=60.8
Q ss_pred EEEEEcCCCchhHhhc----cC--CeEEEEeCCC--------------CCceEEEecCCC----CCCCCCceeeEeeccc
Q psy10644 121 VIADLGCGEAKLAAEL----TQ--HKVHSLDLVA--------------LNERVTSCDMTR----TPLKPYSVDVAVFCLS 176 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l----~~--~~v~giDls~--------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~ 176 (196)
+||+||||.|.....+ ++ ..|+++|.|| .++...++|+.. -|+..+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999987777 22 5899999999 244555666532 3577899999999999
Q ss_pred cc---ccCHHHHHHHHHHhccCC
Q psy10644 177 LM---GTDLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh---~~d~~~~l~e~~rvLkpg 196 (196)
|. ...+..++.+++++||||
T Consensus 154 LSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCC
Confidence 83 337889999999999998
No 93
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.89 E-value=9.5e-09 Score=86.06 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=58.2
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCCC----------------CceEEEecCCCCCCCCCce
Q psy10644 108 IKSIQERESKGRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVAL----------------NERVTSCDMTRTPLKPYSV 168 (196)
Q Consensus 108 ~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~~----------------~~~~~~~d~~~lp~~~~sf 168 (196)
++.+.... .++.+|||+|||+|.++..+ . ..+|+++|+++. .+.+...+. .+..+++|
T Consensus 150 l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~f 226 (288)
T TIGR00406 150 LEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKA 226 (288)
T ss_pred HHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCc
Confidence 34444333 34689999999999987766 2 348999999981 123333332 23446789
Q ss_pred eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 169 DVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|+|+++...+ ....++.++.++||||
T Consensus 227 DlVvan~~~~--~l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 227 DVIVANILAE--VIKELYPQFSRLVKPG 252 (288)
T ss_pred eEEEEecCHH--HHHHHHHHHHHHcCCC
Confidence 9999875433 3467899999999997
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.88 E-value=9e-09 Score=87.70 Aligned_cols=80 Identities=24% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc--
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-- 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-- 177 (196)
.++.+|||+|||+|.++..+ .+.+|+|+|+++ .++.+..+|+.++|+++++||+|++..-+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 45789999999999986655 577999999998 24578899999999888899999996322
Q ss_pred ----cc--c--CHHHHHHHHHHhccCC
Q psy10644 178 ----MG--T--DLAACIKEANRILKLG 196 (196)
Q Consensus 178 ----h~--~--d~~~~l~e~~rvLkpg 196 (196)
.. . -...++.+++|+||||
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCC
Confidence 11 1 2578999999999997
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=98.85 E-value=1.8e-08 Score=78.30 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CC--ceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LN--ERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~--~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
++.+|||+|||+|.++..+ .+.+|+++|+++ .+ +.++.+|+.. ++.+..||+|++...++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 3678999999999998888 467999999998 12 6777888755 34556899999865442
Q ss_pred c---------------------c-CHHHHHHHHHHhccCC
Q psy10644 179 G---------------------T-DLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~---------------------~-d~~~~l~e~~rvLkpg 196 (196)
. . ....+++++.++||||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 1 1 2466899999999986
No 96
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.85 E-value=9.9e-09 Score=82.71 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=75.7
Q ss_pred HHHHhhhhcCCC-ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------
Q psy10644 90 EGFKKQVTQWPI-NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------ 148 (196)
Q Consensus 90 ~~y~~~~~~w~~-~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------ 148 (196)
+.|.+..-.|-. .+...+.+++.......+.+||..|||.|.-+..| .|++|+|+|+|+
T Consensus 8 ~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~ 87 (218)
T PF05724_consen 8 ERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTS 87 (218)
T ss_dssp HHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTT
T ss_pred HHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCccc
Confidence 334433334543 23445556665544555779999999999999888 678999999998
Q ss_pred ---------CCceEEEecCCCCCCCC-CceeeEeecccccc---cCHHHHHHHHHHhccCC
Q psy10644 149 ---------LNERVTSCDMTRTPLKP-YSVDVAVFCLSLMG---TDLAACIKEANRILKLG 196 (196)
Q Consensus 149 ---------~~~~~~~~d~~~lp~~~-~sfD~Vi~~~~lh~---~d~~~~l~e~~rvLkpg 196 (196)
.++.+.++|+.+++... +.||+|+-..+|+. ....+..+.+.++||||
T Consensus 88 ~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 88 VGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp CTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred ccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 24578889998876443 57999998877753 27889999999999986
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.82 E-value=2.6e-08 Score=79.54 Aligned_cols=77 Identities=21% Similarity=0.097 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
...++.+|||+|||+|.++..+ ...+|+++|+++ .++.+..+|......+.+.||+|++..++
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 4455789999999999988766 235899999998 25778888875432234789999988765
Q ss_pred cccCHHHHHHHHHHhccCC
Q psy10644 178 MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLkpg 196 (196)
+. ...++.+.|+||
T Consensus 155 ~~-----~~~~l~~~L~~g 168 (212)
T PRK00312 155 PE-----IPRALLEQLKEG 168 (212)
T ss_pred hh-----hhHHHHHhcCCC
Confidence 32 235677889886
No 98
>KOG1331|consensus
Probab=98.82 E-value=8.7e-09 Score=84.87 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhccCCeEEEEeCCC--------CCc-eEEEecCCCCCCCCCceeeEee
Q psy10644 103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVA--------LNE-RVTSCDMTRTPLKPYSVDVAVF 173 (196)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~~~~v~giDls~--------~~~-~~~~~d~~~lp~~~~sfD~Vi~ 173 (196)
++.....++...+. +..++|+|||.|.....-+.+.++|.|++. .+. .+.++|+.++|+.+.+||.+++
T Consensus 32 ~Wp~v~qfl~~~~~--gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 32 PWPMVRQFLDSQPT--GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred ccHHHHHHHhccCC--cceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 34556666666565 789999999999887665777899999988 244 6889999999999999999999
Q ss_pred ccccccc----CHHHHHHHHHHhccCC
Q psy10644 174 CLSLMGT----DLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh~~----d~~~~l~e~~rvLkpg 196 (196)
..++|+. -...+++|+.|+||||
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 9999654 4678999999999997
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.81 E-value=3.8e-08 Score=77.67 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=56.5
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~ 174 (196)
...++.+|||+|||+|.++..+ .+.+|+++|+++ .++.++.+|+.. ++.-...+|.|++.
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 3345789999999999997776 346999999998 256777777743 22212235665432
Q ss_pred ccccccCHHHHHHHHHHhccCC
Q psy10644 175 LSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~d~~~~l~e~~rvLkpg 196 (196)
. ..+...++++++++||||
T Consensus 117 ~---~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 117 G---GRPIKEILQAVWQYLKPG 135 (196)
T ss_pred C---CcCHHHHHHHHHHhcCCC
Confidence 1 236789999999999997
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.77 E-value=4.3e-08 Score=81.91 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=57.5
Q ss_pred CEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc----
Q psy10644 120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL---- 175 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~---- 175 (196)
.+|||+|||+|.++..+ ++.+|+|+|+|+ .++.++.+|+.. +++.+.||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 68999999999998777 346999999998 137788888755 44455899999851
Q ss_pred ---------cc-ccc------------CHHHHHHHHHHhccCC
Q psy10644 176 ---------SL-MGT------------DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ---------~l-h~~------------d~~~~l~e~~rvLkpg 196 (196)
++ |.+ ....++.++.++|+||
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 11 111 3567889999999986
No 101
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.76 E-value=1.5e-07 Score=76.59 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeecccccc-c--C
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-T--D 181 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~--d 181 (196)
.+..+|||||+|.|.++..+ ++.+++.+|+-. .++.++.+|+. -++|. +|+|++..+||. . +
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~ 175 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDED 175 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHH
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcchHH
Confidence 34568999999999998887 677999999854 58999999997 56665 999999999974 3 5
Q ss_pred HHHHHHHHHHhccCC
Q psy10644 182 LAACIKEANRILKLG 196 (196)
Q Consensus 182 ~~~~l~e~~rvLkpg 196 (196)
-...|+++++.|+||
T Consensus 176 ~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 176 CVKILRNAAAALKPG 190 (241)
T ss_dssp HHHHHHHHHHHSEEC
T ss_pred HHHHHHHHHHHhCCC
Confidence 677899999999986
No 102
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.76 E-value=3.1e-08 Score=76.46 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
..++.+|||||||+|.++..+ .+.+|+++|+++ .++.++.+|+..+++++..||.|+++.-+|.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 344679999999999999988 456999999998 2678999999998887778999998876664
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.76 E-value=6.7e-08 Score=79.82 Aligned_cols=91 Identities=24% Similarity=0.269 Sum_probs=63.5
Q ss_pred HHHHHHHH-hhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCC
Q psy10644 105 DIIIKSIQ-ERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLK 164 (196)
Q Consensus 105 ~~~~~~l~-~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~ 164 (196)
+.+++.+. .....++.+|||+|||+|.++..+ +..+|+|+|+++ .++.++.+|+.. +++
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~ 172 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLP 172 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCC
Confidence 44455443 222334679999999999998777 357999999997 257788888744 334
Q ss_pred CCceeeEeeccccc--------------------------cc-CHHHHHHHHHHhccCC
Q psy10644 165 PYSVDVAVFCLSLM--------------------------GT-DLAACIKEANRILKLG 196 (196)
Q Consensus 165 ~~sfD~Vi~~~~lh--------------------------~~-d~~~~l~e~~rvLkpg 196 (196)
+++||+|++..-.. +. ....++.++.++||||
T Consensus 173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g 231 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPG 231 (275)
T ss_pred CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence 67999999853211 00 2467888899999986
No 104
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=5.3e-08 Score=82.32 Aligned_cols=76 Identities=20% Similarity=0.157 Sum_probs=57.1
Q ss_pred CEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc---
Q psy10644 120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS--- 176 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~--- 176 (196)
.+|||+|||+|.++..+ ++.+|+++|+|+ .++.++.+|+.. ++++++||+|++.--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence 68999999999998877 356999999998 147788888754 234568999998621
Q ss_pred ------c-----ccc------------CHHHHHHHHHHhccCC
Q psy10644 177 ------L-----MGT------------DLAACIKEANRILKLG 196 (196)
Q Consensus 177 ------l-----h~~------------d~~~~l~e~~rvLkpg 196 (196)
+ |.. ....+++++.++|+||
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 0 110 1357889999999997
No 105
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.74 E-value=7.1e-08 Score=80.67 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc-
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS- 176 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~- 176 (196)
+..+|||+|||+|.++..+ ++.+|+|+|+|+ .++.++.+|+.. ++++++||+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 3568999999999998887 356999999998 146788888744 345568999998511
Q ss_pred --------c-----ccc------------CHHHHHHHHHHhccCC
Q psy10644 177 --------L-----MGT------------DLAACIKEANRILKLG 196 (196)
Q Consensus 177 --------l-----h~~------------d~~~~l~e~~rvLkpg 196 (196)
+ |.. ....++.++.++|+||
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 0 100 1356789999999986
No 106
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.72 E-value=7.6e-09 Score=91.08 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=59.0
Q ss_pred CEEEEEcCCCchhHhhccCCeEEEEeCCC-----CCceE--------EEec--CCCCCCCCCceeeEeecccc-ccc-CH
Q psy10644 120 LVIADLGCGEAKLAAELTQHKVHSLDLVA-----LNERV--------TSCD--MTRTPLKPYSVDVAVFCLSL-MGT-DL 182 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l~~~~v~giDls~-----~~~~~--------~~~d--~~~lp~~~~sfD~Vi~~~~l-h~~-d~ 182 (196)
.++||+|||.|.|+..|....|+.+-+.+ ..+.| +.+- ...+||++++||+|+|..++ .+. +-
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 46799999999999999777777766555 12222 2122 24689999999999999998 343 55
Q ss_pred HHHHHHHHHhccCC
Q psy10644 183 AACIKEANRILKLG 196 (196)
Q Consensus 183 ~~~l~e~~rvLkpg 196 (196)
..+|-|+.|+||||
T Consensus 199 g~~l~evdRvLRpG 212 (506)
T PF03141_consen 199 GFLLFEVDRVLRPG 212 (506)
T ss_pred cceeehhhhhhccC
Confidence 67999999999998
No 107
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.72 E-value=1.7e-08 Score=77.38 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=43.8
Q ss_pred CceEEEecCCCCCCCCCceeeEeecccccc-cCHHHHHHHHHHhccCC
Q psy10644 150 NERVTSCDMTRTPLKPYSVDVAVFCLSLMG-TDLAACIKEANRILKLG 196 (196)
Q Consensus 150 ~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~-~d~~~~l~e~~rvLkpg 196 (196)
++.++++|++++|+++++||+|++.+++|+ .|+..+++|++|+||||
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 578999999999999999999999999975 49999999999999997
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.66 E-value=1.6e-07 Score=81.97 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC
Q psy10644 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP 162 (196)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp 162 (196)
....+.+++.+.... .++.+|||+|||+|.++..+ ++.+|+++|+|+ .++.++.+|+.+..
T Consensus 235 RpeTE~LVe~aL~~l-~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 235 RPETEHLVEAVLARL-PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred CccHHHHHHHhhhcc-CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 333455555554322 23569999999999998776 356999999998 25778888885533
Q ss_pred C-CCCceeeEeecc
Q psy10644 163 L-KPYSVDVAVFCL 175 (196)
Q Consensus 163 ~-~~~sfD~Vi~~~ 175 (196)
+ ..++||+|+++-
T Consensus 314 l~~~~~FDLIVSNP 327 (423)
T PRK14966 314 MPSEGKWDIIVSNP 327 (423)
T ss_pred cccCCCccEEEECC
Confidence 3 246899999954
No 109
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.65 E-value=4.5e-08 Score=80.33 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=54.7
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCCCCceEE-----EecC---CCCCCCCCceeeEeecc
Q psy10644 107 IIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVALNERVT-----SCDM---TRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~~~~~~~-----~~d~---~~lp~~~~sfD~Vi~~~ 175 (196)
.++.+.... .++.+|||+|||+|.++..+ .+. +|+|+|+++..+... ..++ ..++..+.+||+|+++.
T Consensus 109 ~l~~l~~~~-~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani 187 (250)
T PRK00517 109 CLEALEKLV-LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANI 187 (250)
T ss_pred HHHHHHhhc-CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcC
Confidence 344444322 34789999999999987766 233 699999999211100 0001 11222223799999865
Q ss_pred cccccCHHHHHHHHHHhccCC
Q psy10644 176 SLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh~~d~~~~l~e~~rvLkpg 196 (196)
..+ ....++.++.++||||
T Consensus 188 ~~~--~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 188 LAN--PLLELAPDLARLLKPG 206 (250)
T ss_pred cHH--HHHHHHHHHHHhcCCC
Confidence 432 2467899999999997
No 110
>KOG2940|consensus
Probab=98.65 E-value=5.1e-08 Score=78.33 Aligned_cols=78 Identities=24% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchhHhhccCC---eEEEEeCCC-----------CC--ceEEEecCCCCCCCCCceeeEeeccccccc-C
Q psy10644 119 RLVIADLGCGEAKLAAELTQH---KVHSLDLVA-----------LN--ERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-D 181 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~~~---~v~giDls~-----------~~--~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d 181 (196)
...++|||||-|.+.+.+.+. +++-+|.|. +. ....+.|-+.++|.+++||+|++++++||+ |
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 457999999999999999332 778888886 22 345677888899999999999999999999 8
Q ss_pred HHHHHHHHHHhccCC
Q psy10644 182 LAACIKEANRILKLG 196 (196)
Q Consensus 182 ~~~~l~e~~rvLkpg 196 (196)
.+..+.++...|||+
T Consensus 153 LPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPD 167 (325)
T ss_pred CchHHHHHHHhcCCC
Confidence 999999999999995
No 111
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.65 E-value=6.1e-08 Score=79.13 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCC--CCCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~ 176 (196)
..+|||||||+|.++..+ ...+|++||+.+ .++.++..|+.++. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 789999999999998888 236999999998 47899999997753 44557999998632
Q ss_pred ---------------c-ccc---CHHHHHHHHHHhccCC
Q psy10644 177 ---------------L-MGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 177 ---------------l-h~~---d~~~~l~e~~rvLkpg 196 (196)
+ |++ +.+.+++.+.++||||
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence 2 222 6888999999999986
No 112
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.65 E-value=1.6e-07 Score=73.32 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=64.2
Q ss_pred HHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceee
Q psy10644 111 IQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDV 170 (196)
Q Consensus 111 l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~ 170 (196)
|..+.+.++.+++|||||+|.++..+ +.++|+++|-++ .|+.++.+++-. ++- ..++|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~-~~~~da 105 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD-LPSPDA 105 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC-CCCCCE
Confidence 34456677899999999999997776 567999999877 588888888744 332 227999
Q ss_pred EeecccccccCHHHHHHHHHHhccCC
Q psy10644 171 AVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 171 Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|+..-. -+.+..|+.+...||||
T Consensus 106 iFIGGg---~~i~~ile~~~~~l~~g 128 (187)
T COG2242 106 IFIGGG---GNIEEILEAAWERLKPG 128 (187)
T ss_pred EEECCC---CCHHHHHHHHHHHcCcC
Confidence 988776 46788888888888886
No 113
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.64 E-value=1.8e-07 Score=79.57 Aligned_cols=77 Identities=17% Similarity=0.052 Sum_probs=56.7
Q ss_pred cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
...++.+|||||||+|.++..+. ...|+++|+++ .++.++.+|....+...+.||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 44457899999999999987772 23699999998 25778888876655555789999988
Q ss_pred ccccccCHHHHHHHHHHhccCC
Q psy10644 175 LSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh~~d~~~~l~e~~rvLkpg 196 (196)
..++. ....+.+.|+||
T Consensus 157 ~g~~~-----ip~~~~~~Lkpg 173 (322)
T PRK13943 157 VGVDE-----VPETWFTQLKEG 173 (322)
T ss_pred CchHH-----hHHHHHHhcCCC
Confidence 66532 223466788876
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.4e-07 Score=78.65 Aligned_cols=80 Identities=26% Similarity=0.312 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
+...+.+|||+|||.|.++..+ +..+|+-+|++. .+..+...|+.. +.++ +||+|+++-
T Consensus 155 ~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNP 232 (300)
T COG2813 155 PPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNP 232 (300)
T ss_pred CccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCC
Confidence 3333559999999999998888 456999999998 122355555533 4445 999999999
Q ss_pred cccc-cC-----HHHHHHHHHHhccCC
Q psy10644 176 SLMG-TD-----LAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh~-~d-----~~~~l~e~~rvLkpg 196 (196)
-+|- .+ -.++|+++.+.|++|
T Consensus 233 Pfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 233 PFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred CccCCcchhHHHHHHHHHHHHHhhccC
Confidence 9983 22 247999999999987
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.63 E-value=1.1e-07 Score=77.81 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchhHhhccC--CeEEEEeCCC------CCceEEEecCCCCCCCCCceeeEeecccc-cccCHHHHHHH
Q psy10644 118 GRLVIADLGCGEAKLAAELTQ--HKVHSLDLVA------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGTDLAACIKE 188 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~~--~~v~giDls~------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~d~~~~l~e 188 (196)
...++||||+|.|..+..+.+ .+|++.+.|+ ..-.+.+.+..++.-.+..||+|.|.++| .+.+|..+|++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~ 173 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRD 173 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHH
Confidence 356899999999999999944 3899999999 12233444554554446789999999999 78899999999
Q ss_pred HHHhccCC
Q psy10644 189 ANRILKLG 196 (196)
Q Consensus 189 ~~rvLkpg 196 (196)
+++.|+|+
T Consensus 174 i~~~l~p~ 181 (265)
T PF05219_consen 174 IRRALKPN 181 (265)
T ss_pred HHHHhCCC
Confidence 99999985
No 116
>PRK00811 spermidine synthase; Provisional
Probab=98.63 E-value=1.5e-07 Score=78.75 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC--------------------CCceEEEecCCC-CCCCCCceeeEee
Q psy10644 119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA--------------------LNERVTSCDMTR-TPLKPYSVDVAVF 173 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~--------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~ 173 (196)
..+||+||||+|.+++.+. ..+|+++|+++ ++++++.+|... +....+.||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 5689999999999998872 24899999998 245778888754 3334678999998
Q ss_pred ccccc-cc----CHHHHHHHHHHhccCC
Q psy10644 174 CLSLM-GT----DLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh-~~----d~~~~l~e~~rvLkpg 196 (196)
...-. .. -...+++.++++|+||
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 65432 22 2367899999999987
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=98.62 E-value=1.6e-07 Score=77.85 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
..+|||+|||+|.++..+ .+.+|+++|+++ .++.++.+|+..+.. +.+||+|++.-.++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 568999999999997766 246999999999 367889999987653 56899999987774
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.60 E-value=4.3e-07 Score=74.70 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CCceEEEecCCC-CCC-CCCceeeEeeccccc--
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LNERVTSCDMTR-TPL-KPYSVDVAVFCLSLM-- 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~~~~~~~d~~~-lp~-~~~sfD~Vi~~~~lh-- 178 (196)
..+|||+|||+|.++..+ .+.+|+++|+++ .+..++.+|+.+ ++- ..+.||+|+++--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 458999999999998776 345899999998 235788888754 221 135799999864221
Q ss_pred -------------c--------cC----HHHHHHHHHHhccCC
Q psy10644 179 -------------G--------TD----LAACIKEANRILKLG 196 (196)
Q Consensus 179 -------------~--------~d----~~~~l~e~~rvLkpg 196 (196)
. .| ...++..+.++||||
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g 209 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG 209 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 0 01 347788888999986
No 119
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-07 Score=79.08 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=55.6
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC------------CCce----EEEecCCCCCCCCCce
Q psy10644 108 IKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA------------LNER----VTSCDMTRTPLKPYSV 168 (196)
Q Consensus 108 ~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~------------~~~~----~~~~d~~~lp~~~~sf 168 (196)
+++|..+. .++.+|||+|||+|.++... .|+ +|+|+|+.| .++. ....+.... ...+.|
T Consensus 153 L~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-~~~~~~ 230 (300)
T COG2264 153 LEALEKLL-KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-PENGPF 230 (300)
T ss_pred HHHHHHhh-cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-cccCcc
Confidence 34454433 35889999999999997766 444 799999999 1222 111111111 123699
Q ss_pred eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 169 DVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|+|+++-.-.. ...+..++.+.||||
T Consensus 231 DvIVANILA~v--l~~La~~~~~~lkpg 256 (300)
T COG2264 231 DVIVANILAEV--LVELAPDIKRLLKPG 256 (300)
T ss_pred cEEEehhhHHH--HHHHHHHHHHHcCCC
Confidence 99998763232 247888889999986
No 120
>PHA03412 putative methyltransferase; Provisional
Probab=98.55 E-value=1.6e-07 Score=76.20 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchhHhhcc-------CCeEEEEeCCC----------CCceEEEecCCCCCCCCCceeeEeeccccc---
Q psy10644 119 RLVIADLGCGEAKLAAELT-------QHKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM--- 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~-------~~~v~giDls~----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh--- 178 (196)
+.+|||+|||+|.++..+. ..+|+++|+++ .++.++.+|+...++ +++||+||++--++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 5799999999999987651 34899999999 357889999876665 56899999864432
Q ss_pred ---------ccC-HHHHHHHHHHhccCC
Q psy10644 179 ---------GTD-LAACIKEANRILKLG 196 (196)
Q Consensus 179 ---------~~d-~~~~l~e~~rvLkpg 196 (196)
+.. ...++..+.|++++|
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 111 456899999998887
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=2.9e-07 Score=81.29 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=61.6
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC----CCCCceee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP----LKPYSVDV 170 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp----~~~~sfD~ 170 (196)
.+.++.+|||+|||+|..+..+ ...+|+++|+++ .++.++.+|+..++ +..++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 3455789999999999887766 235899999998 35788888987765 44678999
Q ss_pred Eeec---c---cc-cccC----------------HHHHHHHHHHhccCC
Q psy10644 171 AVFC---L---SL-MGTD----------------LAACIKEANRILKLG 196 (196)
Q Consensus 171 Vi~~---~---~l-h~~d----------------~~~~l~e~~rvLkpg 196 (196)
|++. . ++ +..+ ..++|.++.++||||
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9962 2 22 2222 357899999999997
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=4.8e-07 Score=79.79 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC--CCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--LKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~ 174 (196)
.+.++.+|||+|||+|..+..+ .+.+|+++|+++ .++.++.+|+..++ +++++||.|++.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 3456889999999999988777 235999999999 13577888887654 346789999842
Q ss_pred c---c---c-ccc---------C-------HHHHHHHHHHhccCC
Q psy10644 175 L---S---L-MGT---------D-------LAACIKEANRILKLG 196 (196)
Q Consensus 175 ~---~---l-h~~---------d-------~~~~l~e~~rvLkpg 196 (196)
. . + +.. + ..++|.++.++||||
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 1 1 110 1 246899999999997
No 123
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.53 E-value=4.8e-07 Score=81.39 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL- 177 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l- 177 (196)
..+|||+|||+|.++..+ ++.+|+++|+|+ .++.++.+|+.. +++.++||+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 468999999999998766 456999999998 146677788643 3345689999984211
Q ss_pred --------------c-------c-c----CHHHHHHHHHHhccCC
Q psy10644 178 --------------M-------G-T----DLAACIKEANRILKLG 196 (196)
Q Consensus 178 --------------h-------~-~----d~~~~l~e~~rvLkpg 196 (196)
| + . .+..++.++.++|+||
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~g 262 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPN 262 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCC
Confidence 1 0 0 1345678888999986
No 124
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.52 E-value=2e-07 Score=79.48 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchh-Hhhc--cCCeEEEEeCCC-------------------------CCceEEEecCCC------CCC
Q psy10644 118 GRLVIADLGCGEAKL-AAEL--TQHKVHSLDLVA-------------------------LNERVTSCDMTR------TPL 163 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~-a~~l--~~~~v~giDls~-------------------------~~~~~~~~d~~~------lp~ 163 (196)
++.+|||||||-|.- ..+. .-..++|+|++. -...++.+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 478999999997764 4444 234999999998 123456666642 222
Q ss_pred CCCceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644 164 KPYSVDVAVFCLSLMGT-----DLAACIKEANRILKLG 196 (196)
Q Consensus 164 ~~~sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg 196 (196)
+...||+|-|.++||+. ....+|+.+.+.||||
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 23599999999999854 3556899999999997
No 125
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.51 E-value=5.3e-07 Score=75.73 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC------------C--CceEEEecCCCCCCCCCce
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA------------L--NERVTSCDMTRTPLKPYSV 168 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~------------~--~~~~~~~d~~~lp~~~~sf 168 (196)
..++.|.... .++.+|||+|||+|.++... .| .+|+++|+++ . ...+...... ....+.|
T Consensus 150 lcl~~l~~~~-~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~ 226 (295)
T PF06325_consen 150 LCLELLEKYV-KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKF 226 (295)
T ss_dssp HHHHHHHHHS-STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-E
T ss_pred HHHHHHHHhc-cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccC
Confidence 3445565543 35679999999999886655 34 4899999999 1 1133332222 2335899
Q ss_pred eeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 169 DVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 169 D~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
|+|+++-.... ...++..+.++|+||
T Consensus 227 dlvvANI~~~v--L~~l~~~~~~~l~~~ 252 (295)
T PF06325_consen 227 DLVVANILADV--LLELAPDIASLLKPG 252 (295)
T ss_dssp EEEEEES-HHH--HHHHHHHCHHHEEEE
T ss_pred CEEEECCCHHH--HHHHHHHHHHhhCCC
Confidence 99998765432 244666677777764
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=5.2e-07 Score=79.99 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEee--
Q psy10644 116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVF-- 173 (196)
Q Consensus 116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~-- 173 (196)
+.++.+|||+|||+|..+..+ .+.+|+++|+++ .++.++.+|+..++ ++++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 345789999999999876555 245899999999 25678888887765 5678999986
Q ss_pred -cccc-c---cc----------------CHHHHHHHHHHhccCC
Q psy10644 174 -CLSL-M---GT----------------DLAACIKEANRILKLG 196 (196)
Q Consensus 174 -~~~l-h---~~----------------d~~~~l~e~~rvLkpg 196 (196)
|... + .. ....+|.++.++||||
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2221 1 10 1236899999999997
No 127
>PRK04457 spermidine synthase; Provisional
Probab=98.50 E-value=3.2e-07 Score=75.88 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCC-CCCCCCceeeEeecccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~l 177 (196)
..+|||||||+|.++..+ +..+|+++|+++ .++.++.+|... +.-..++||+|++. .+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D-~~ 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD-GF 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-CC
Confidence 568999999999998877 456999999988 346788888744 23234689999864 23
Q ss_pred ccc------CHHHHHHHHHHhccCC
Q psy10644 178 MGT------DLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~------d~~~~l~e~~rvLkpg 196 (196)
+.. ....+++++.++|+||
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pg 170 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSD 170 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCC
Confidence 211 3479999999999997
No 128
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.49 E-value=1.3e-06 Score=77.45 Aligned_cols=114 Identities=21% Similarity=0.328 Sum_probs=70.9
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHhhcC-CCCCEEEEEcCCCchhHhhc--c------CCeE
Q psy10644 71 SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERES-KGRLVIADLGCGEAKLAAEL--T------QHKV 141 (196)
Q Consensus 71 ~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~~~~~~~l~~~~~-~~~~~ILDlGCG~G~~a~~l--~------~~~v 141 (196)
.....+.|.+++..|+.|...-. ..+.+....... .++..|||||||+|-++... . ..+|
T Consensus 149 ~s~tYe~fE~D~vKY~~Ye~AI~-----------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~V 217 (448)
T PF05185_consen 149 ESQTYEVFEKDPVKYDQYERAIE-----------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKV 217 (448)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHH-----------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEE
T ss_pred ccccHhhHhcCHHHHHHHHHHHH-----------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEE
Confidence 44556667777777777754431 122222221110 12568999999999886544 1 2499
Q ss_pred EEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-cc--cCHHHHHHHHHHhccCC
Q psy10644 142 HSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MG--TDLAACIKEANRILKLG 196 (196)
Q Consensus 142 ~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~--~d~~~~l~e~~rvLkpg 196 (196)
++++-++ ..+.++.+|++++.+++ .+|+||+-..= .+ .-...+|..+.|.||||
T Consensus 218 yAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 218 YAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred EEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 9999988 47899999999998765 89999985432 22 24567888889999985
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=7.5e-07 Score=78.67 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=60.1
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVF 173 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~ 173 (196)
.+.++.+|||+|||+|..+..+ .+.+|+++|+++ .++.++.+|+..++ +.+++||.|++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 3445789999999999876655 256999999998 24678888887765 44678999986
Q ss_pred ---cccc-c---cc----------------CHHHHHHHHHHhccCC
Q psy10644 174 ---CLSL-M---GT----------------DLAACIKEANRILKLG 196 (196)
Q Consensus 174 ---~~~l-h---~~----------------d~~~~l~e~~rvLkpg 196 (196)
|..+ . .. ...++|.++.++||||
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222 1 11 1256799999999997
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.43 E-value=6.5e-07 Score=70.96 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCC-CC--CCCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTR-TP--LKPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~-lp--~~~~sfD~Vi~~~~ 176 (196)
...+||||||.|.+...+ +...++|+|+.. .|+.++.+|+.. ++ ++++++|.|+..+-
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999997777 678999999998 699999999876 32 56789999888764
Q ss_pred c-c-----cc---CHHHHHHHHHHhccCC
Q psy10644 177 L-M-----GT---DLAACIKEANRILKLG 196 (196)
Q Consensus 177 l-h-----~~---d~~~~l~e~~rvLkpg 196 (196)
= | .. --..++.+++++|+||
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 3 2 11 2468999999999986
No 131
>KOG1975|consensus
Probab=98.43 E-value=6.7e-07 Score=75.04 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------------CCceEEEecCC------CCCCCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------------LNERVTSCDMT------RTPLKPY 166 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------------~~~~~~~~d~~------~lp~~~~ 166 (196)
+++..++|||||-|.-+... .+ ..++|+|++. -.+.|+.+|.. .+++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 44678999999998776655 23 3899999998 13578888863 2455566
Q ss_pred ceeeEeeccccccc-----CHHHHHHHHHHhccCC
Q psy10644 167 SVDVAVFCLSLMGT-----DLAACIKEANRILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~~lh~~-----d~~~~l~e~~rvLkpg 196 (196)
+||+|-|-+++|+. ...-+|+.+.+.||||
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 69999999999843 3556899999999998
No 132
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.43 E-value=1.5e-06 Score=67.54 Aligned_cols=80 Identities=20% Similarity=0.154 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCCchhHhhc--c--CCeEEEEeCCC-----------------CCceEEEecCCC-C---CCCCCceeeE
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--T--QHKVHSLDLVA-----------------LNERVTSCDMTR-T---PLKPYSVDVA 171 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~--~~~v~giDls~-----------------~~~~~~~~d~~~-l---p~~~~sfD~V 171 (196)
..+.+|||||||+|..+..+ . ..+|+..|..+ .++.+...|-.+ . .+....||+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 45789999999999776666 3 56999999888 123444444322 1 1245689999
Q ss_pred eeccccccc-CHHHHHHHHHHhccCC
Q psy10644 172 VFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+++.+++.. ..+.+++-+.++|+|+
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred EEecccchHHHHHHHHHHHHHHhCCC
Confidence 999999755 7888999999999875
No 133
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.43 E-value=9e-07 Score=72.98 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
.++.+|||||||+|.++..+ .+.+|+++|+++ .++.++.+|+..++++ .||.|+++.-.+.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 34789999999999999999 456899999997 3688999999888765 4899998876653
No 134
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.42 E-value=1.4e-06 Score=69.48 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHhhcCC-----CCCEEEEEcCCCchhHhhc-cCCeEEEEeCCCCCceEEEecCCCCCCC---CCceeeEe
Q psy10644 102 NPVDIIIKSIQERESK-----GRLVIADLGCGEAKLAAEL-TQHKVHSLDLVALNERVTSCDMTRTPLK---PYSVDVAV 172 (196)
Q Consensus 102 ~~~~~~~~~l~~~~~~-----~~~~ILDlGCG~G~~a~~l-~~~~v~giDls~~~~~~~~~d~~~lp~~---~~sfD~Vi 172 (196)
+.-..++++|...... ...++|||||=....+... .-..|+.||+.+....+.++|.-+.|+| .+.||+|+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEE
Confidence 3455667777553221 2369999999866554433 3347999999998899999999887774 67999999
Q ss_pred eccccc-cc---CHHHHHHHHHHhccCC
Q psy10644 173 FCLSLM-GT---DLAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~~~lh-~~---d~~~~l~e~~rvLkpg 196 (196)
++++|. .+ ...++++.+++.|+|+
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 999994 33 4567999999999985
No 135
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.42 E-value=6.3e-07 Score=74.50 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=49.3
Q ss_pred CCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 116 SKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 116 ~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
..++.+|||||||+|.++..+ .+.+|+|+|+++ .++.++.+|+..+++++-.+|.|+++.-.+
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence 345779999999999999888 345899999998 367899999988876543357888775543
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.42 E-value=9.3e-07 Score=73.16 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
.+.++.+|||+|||+|..+..+ ....|+++|+++ .++.++..|...++...+.||+|++-
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 3345789999999999987666 135899999998 35677888877666555679999862
Q ss_pred c---c---c-ccc----------------CHHHHHHHHHHhccCC
Q psy10644 175 L---S---L-MGT----------------DLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~---~---l-h~~----------------d~~~~l~e~~rvLkpg 196 (196)
- . + +.. ...++|.++.++||||
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 1 1 111 1245899999999997
No 137
>KOG1271|consensus
Probab=98.41 E-value=6.4e-07 Score=69.69 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=58.3
Q ss_pred EEEEEcCCCchhHhhcc----CCeEEEEeCCC---------------CC-ceEEEecCCCCCCCCCceeeEeecccc---
Q psy10644 121 VIADLGCGEAKLAAELT----QHKVHSLDLVA---------------LN-ERVTSCDMTRTPLKPYSVDVAVFCLSL--- 177 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l~----~~~v~giDls~---------------~~-~~~~~~d~~~lp~~~~sfD~Vi~~~~l--- 177 (196)
+|||+|||.|.+...|. ...++|+|.|+ .+ ++|.+.|+..-.+..+.||+|+--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 89999999999998882 33699999998 23 899999997767778899999854433
Q ss_pred --ccc----CHHHHHHHHHHhccCC
Q psy10644 178 --MGT----DLAACIKEANRILKLG 196 (196)
Q Consensus 178 --h~~----d~~~~l~e~~rvLkpg 196 (196)
|.. .+.-.+..+.++|+||
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCC
Confidence 322 2345677888888876
No 138
>KOG1499|consensus
Probab=98.40 E-value=1.1e-06 Score=74.53 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
+.+|||+|||+|.++... .| .+|+++|.|. .-+.++.+.++++.+|...+|+|++-+.=
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 779999999999998777 33 4999999998 24788888898887778899999986543
No 139
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.40 E-value=7.6e-07 Score=70.62 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchhHhhc-----------c--CCeEEEEeCCC------------------------------------
Q psy10644 118 GRLVIADLGCGEAKLAAEL-----------T--QHKVHSLDLVA------------------------------------ 148 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l-----------~--~~~v~giDls~------------------------------------ 148 (196)
+..+|+-.||++|.=+-.| . ..+|+|.|+++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4689999999999542222 1 24999999998
Q ss_pred -------CCceEEEecCCCCCCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 149 -------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 149 -------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
..+.|...|+.+.+.+.+.||+|+|.++|.+. ...++++.+++.|+||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 37889999987744456899999999999544 4678999999999986
No 140
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.39 E-value=1.1e-06 Score=77.47 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=56.9
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CCc--eE--EEecCCCCCC--CCCceeeEe
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LNE--RV--TSCDMTRTPL--KPYSVDVAV 172 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~~--~~--~~~d~~~lp~--~~~sfD~Vi 172 (196)
.+.++.+|||+|||+|..+..+ .+.+|+++|+++ .++ .+ ..+|....+. ++++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4456789999999999887666 346999999999 122 23 4445444333 567899998
Q ss_pred ec---c---ccc-ccC----------------HHHHHHHHHHhccCC
Q psy10644 173 FC---L---SLM-GTD----------------LAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~---~---~lh-~~d----------------~~~~l~e~~rvLkpg 196 (196)
+- . +++ ..+ ...+|.+++++||||
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 52 2 232 222 367999999999997
No 141
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.3e-06 Score=68.31 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
.+.+|+|+|||||.++... ..++|+|+|+.+ .++.++++|+..+. +.+|.|+.+--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCC
Confidence 4668999999999886555 447999999999 36889999998754 456777765433
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=1.4e-06 Score=72.40 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=55.5
Q ss_pred CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~ 174 (196)
..+||+||||+|.+++.+. ..+|+++|+++ ++++++.+|... +.-.++.||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 4599999999999987771 34899999997 134455555432 22225789999986
Q ss_pred cccc-cc--C--HHHHHHHHHHhccCC
Q psy10644 175 LSLM-GT--D--LAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh-~~--d--~~~~l~e~~rvLkpg 196 (196)
.... .. + ...+++.++++|+||
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 6532 11 2 568899999999997
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.38 E-value=1.6e-06 Score=70.51 Aligned_cols=88 Identities=8% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCC-C
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRT-P 162 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~l-p 162 (196)
..++..+..... ..+|||||||+|..+..+ ...+|+++|+++ .++.++.+|+.+. +
T Consensus 57 g~~L~~l~~~~~--~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 57 GLFLSMLVKIMN--AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHhC--CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 445555554443 679999999999865544 246999999998 2577888887542 2
Q ss_pred -----CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 163 -----LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 163 -----~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
.+.++||+|++-.. -..+..++.++.++||||
T Consensus 135 ~l~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred HHHhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCC
Confidence 12468999876432 125667899999999997
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=1.7e-06 Score=76.73 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=58.5
Q ss_pred CCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC--CCCCceeeEee
Q psy10644 116 SKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP--LKPYSVDVAVF 173 (196)
Q Consensus 116 ~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp--~~~~sfD~Vi~ 173 (196)
..++.+|||+|||+|..+..+ ...+|+++|+++ .++.++.+|+..++ ++ ++||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 345789999999999987766 246999999998 24678888987653 33 78999987
Q ss_pred ccc---c----ccc---------C-------HHHHHHHHHHhccCC
Q psy10644 174 CLS---L----MGT---------D-------LAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~---l----h~~---------d-------~~~~l~e~~rvLkpg 196 (196)
..- + +.. + ...+|.++.++||||
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 321 1 111 1 245799999999997
No 145
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.36 E-value=1.5e-06 Score=68.97 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCc-eEEEecCCCC--C
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNE-RVTSCDMTRT--P 162 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~-~~~~~d~~~l--p 162 (196)
+-|++.|+...+..+.+|||||||||..+..| +...-.--|..+ .|+ .-+..|+..- +
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 44555555443333436999999999887666 333444445444 222 2234455432 2
Q ss_pred C------CCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 163 L------KPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 163 ~------~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
. ..++||+|++..++|.. ..+.+|+.+.++|++|
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 2 35689999999999965 5678999999999986
No 146
>PRK04148 hypothetical protein; Provisional
Probab=98.34 E-value=1.4e-06 Score=64.88 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCch-hHhhc--cCCeEEEEeCCCC--------CceEEEecCCCCCCC-CCceeeEeecccccccCHHHH
Q psy10644 118 GRLVIADLGCGEAK-LAAEL--TQHKVHSLDLVAL--------NERVTSCDMTRTPLK-PYSVDVAVFCLSLMGTDLAAC 185 (196)
Q Consensus 118 ~~~~ILDlGCG~G~-~a~~l--~~~~v~giDls~~--------~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~d~~~~ 185 (196)
++.+|||||||.|. ++..| .+.+|+++|+++. .+.++++|+.+-.+. ...+|+|.++.- ..+....
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp--p~el~~~ 93 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP--PRDLQPF 93 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC--CHHHHHH
Confidence 45789999999996 88888 6789999999993 568899998764433 466888877653 1144555
Q ss_pred HHHHHHh
Q psy10644 186 IKEANRI 192 (196)
Q Consensus 186 l~e~~rv 192 (196)
+.++.+-
T Consensus 94 ~~~la~~ 100 (134)
T PRK04148 94 ILELAKK 100 (134)
T ss_pred HHHHHHH
Confidence 5555543
No 147
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.5e-06 Score=72.57 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHH-hhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC------------CC---ceEEEecCC
Q psy10644 100 PINPVDIIIKSIQ-ERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA------------LN---ERVTSCDMT 159 (196)
Q Consensus 100 ~~~~~~~~~~~l~-~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~------------~~---~~~~~~d~~ 159 (196)
|......+++.+. ....... +|||||||+|.++..+ +..+|+|+|+|+ .+ +.++..|..
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF 170 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc
Confidence 3444455555532 1122112 7999999999998888 345999999999 12 234444432
Q ss_pred CCCCCCCceeeEeec
Q psy10644 160 RTPLKPYSVDVAVFC 174 (196)
Q Consensus 160 ~lp~~~~sfD~Vi~~ 174 (196)
. ++. +.||+|+++
T Consensus 171 ~-~~~-~~fDlIVsN 183 (280)
T COG2890 171 E-PLR-GKFDLIVSN 183 (280)
T ss_pred c-ccC-CceeEEEeC
Confidence 2 232 389999986
No 148
>PLN02366 spermidine synthase
Probab=98.31 E-value=3.2e-06 Score=71.55 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCchhHhhcc---C-CeEEEEeCCC-------------------CCceEEEecCCCC--CCCCCceeeEee
Q psy10644 119 RLVIADLGCGEAKLAAELT---Q-HKVHSLDLVA-------------------LNERVTSCDMTRT--PLKPYSVDVAVF 173 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~-------------------~~~~~~~~d~~~l--p~~~~sfD~Vi~ 173 (196)
..+||+||||.|.+++.+. + .+|+.+|+++ ++++++.+|.... ..+++.||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 5789999999999998882 2 3799999888 2577888886432 123568999998
Q ss_pred ccccc-cc----CHHHHHHHHHHhccCC
Q psy10644 174 CLSLM-GT----DLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh-~~----d~~~~l~e~~rvLkpg 196 (196)
-..-. .. --..+++.++++|+||
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 55432 22 2357899999999997
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=98.29 E-value=2.7e-06 Score=73.19 Aligned_cols=78 Identities=17% Similarity=0.084 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC----------------------CCceEEEecCCC-CCCCCCceeeE
Q psy10644 119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA----------------------LNERVTSCDMTR-TPLKPYSVDVA 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~----------------------~~~~~~~~d~~~-lp~~~~sfD~V 171 (196)
..+||+||||+|..++.+. ..+|+++|+++ ++++++.+|... +.-..+.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 5699999999999888772 25899999998 245566777654 34445789999
Q ss_pred eeccccc----c--cCHHHHHHHHHHhccCC
Q psy10644 172 VFCLSLM----G--TDLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~lh----~--~d~~~~l~e~~rvLkpg 196 (196)
++-..-. . .--..+++.+++.|+||
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 9874211 0 12367999999999997
No 150
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.29 E-value=1.6e-06 Score=69.50 Aligned_cols=64 Identities=19% Similarity=0.098 Sum_probs=46.4
Q ss_pred hcCCCCCEEEEEcCCCchhHhhc---cC--CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644 114 RESKGRLVIADLGCGEAKLAAEL---TQ--HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVF 173 (196)
Q Consensus 114 ~~~~~~~~ILDlGCG~G~~a~~l---~~--~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~ 173 (196)
+..+++.+|||||||+|.++..| .+ ..|+++|..+ .|+.++.+|...---..+.||.|++
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v 147 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIV 147 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEE
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEE
Confidence 34566899999999999998877 22 3799999998 3788999997553234578999999
Q ss_pred cccc
Q psy10644 174 CLSL 177 (196)
Q Consensus 174 ~~~l 177 (196)
..+.
T Consensus 148 ~~a~ 151 (209)
T PF01135_consen 148 TAAV 151 (209)
T ss_dssp SSBB
T ss_pred eecc
Confidence 8876
No 151
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.28 E-value=8.8e-06 Score=67.44 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhcC-----CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------------------
Q psy10644 104 VDIIIKSIQERES-----KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------------------- 148 (196)
Q Consensus 104 ~~~~~~~l~~~~~-----~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------------------- 148 (196)
+..+++.|....+ ....+||==|||.|+++-.+ .+..|.|.+.|-
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 4456666665533 23578999999999999988 677899998886
Q ss_pred ---------------------------CCceEEEecCCCCCCCC---CceeeEeeccccc-ccCHHHHHHHHHHhccCC
Q psy10644 149 ---------------------------LNERVTSCDMTRTPLKP---YSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196 (196)
Q Consensus 149 ---------------------------~~~~~~~~d~~~lp~~~---~sfD~Vi~~~~lh-~~d~~~~l~e~~rvLkpg 196 (196)
.+.....+|...+..++ ++||+|+.|+-+- ..|....|+.|+++||||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 13455566665554344 7999999997774 448999999999999997
No 152
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.28 E-value=2.6e-06 Score=70.01 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=49.2
Q ss_pred cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCcee---eEeeccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVD---VAVFCLS 176 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD---~Vi~~~~ 176 (196)
...++.+|||||||+|.++..| ....|+++|+++ .++.++.+|+..++++ .+| +|+++..
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 3345789999999999999999 345799999988 3577888999887765 466 7777766
Q ss_pred ccc
Q psy10644 177 LMG 179 (196)
Q Consensus 177 lh~ 179 (196)
+|.
T Consensus 104 y~i 106 (253)
T TIGR00755 104 YNI 106 (253)
T ss_pred hhh
Confidence 553
No 153
>KOG1269|consensus
Probab=98.27 E-value=7.6e-07 Score=76.76 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc-
Q psy10644 118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL- 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l- 177 (196)
++..++|+|||-|...+.+ ..+.++|+|+++ ....+..+|+-..|++++.||.|-+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 3568999999999998888 668999999998 24456788888889999999999999999
Q ss_pred cccCHHHHHHHHHHhccCC
Q psy10644 178 MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLkpg 196 (196)
|..+...+++|++|+||||
T Consensus 190 ~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred cCCcHHHHHHHHhcccCCC
Confidence 7779999999999999997
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.27 E-value=1.3e-06 Score=73.99 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCC-CCCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPL-KPYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~-~~~sfD~Vi~~ 174 (196)
+.+|||+|||+|.++..+ .+.+|+|+|+++ .++.++++|+..+.. ..+.||+|++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 579999999999999888 456999999998 357899999876532 34579999876
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.26 E-value=1.6e-06 Score=72.60 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCchhHhhc--------c----CCeEEEEeCCC--------------------------------------
Q psy10644 119 RLVIADLGCGEAKLAAEL--------T----QHKVHSLDLVA-------------------------------------- 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--------~----~~~v~giDls~-------------------------------------- 148 (196)
..+|+..||.||.=+-.| . ..+|+|+|+++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999542222 1 24899999998
Q ss_pred --------CCceEEEecCCCCCCC-CCceeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644 149 --------LNERVTSCDMTRTPLK-PYSVDVAVFCLSL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 149 --------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
..+.|.+.|+...+++ .+.||+|+|.++| |.. ...++++.+++.|+||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 1235666676554433 5789999999999 443 5788999999999997
No 156
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.26 E-value=1.9e-06 Score=76.32 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCC----CCCCCCceeeEeec
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTR----TPLKPYSVDVAVFC 174 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~ 174 (196)
.++.+|||+|||+|.++..+ ...+|+|+|+|+ .++.++.+|+.+ +++.+++||+|++.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45679999999999999888 346999999999 367899999854 23556789999874
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.25 E-value=9.8e-07 Score=71.57 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC--------CCce---EEEecCCCC-----CCCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA--------LNER---VTSCDMTRT-----PLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~--------~~~~---~~~~d~~~l-----p~~~~sfD~Vi~~~~lh 178 (196)
++.+|||+|||+|.++..+ . ..+|+|+|+++ .+.. +...|+..+ +..-..+|+++++..+.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~~ 154 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLISI 154 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHhH
Confidence 4679999999999999988 3 34899999998 1222 333344432 22224788888777664
Q ss_pred ccCHHHHH
Q psy10644 179 GTDLAACI 186 (196)
Q Consensus 179 ~~d~~~~l 186 (196)
..+...++
T Consensus 155 l~~i~~~l 162 (228)
T TIGR00478 155 LPELDLLL 162 (228)
T ss_pred HHHHHHHh
Confidence 33444433
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.24 E-value=5e-06 Score=66.10 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCchhHhh-c--cCCeEEEEeCCC---------------CCceEEEecCCC-CCCCCCceeeEeecccc
Q psy10644 119 RLVIADLGCGEAKLAAE-L--TQHKVHSLDLVA---------------LNERVTSCDMTR-TPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~-l--~~~~v~giDls~---------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~~l 177 (196)
+.+|||+|||+|.++.. + ...+|+++|.++ .++.++.+|+.. ++.....||+|++.--+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 57999999999999875 4 235999999998 257788888754 33234579999987664
No 159
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.22 E-value=3e-06 Score=67.79 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchhHhhc-cC--CeEEEEeCCC-----------C---C-ceEEEecCCCCCCCCCceeeEeecccc-c
Q psy10644 118 GRLVIADLGCGEAKLAAEL-TQ--HKVHSLDLVA-----------L---N-ERVTSCDMTRTPLKPYSVDVAVFCLSL-M 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l-~~--~~v~giDls~-----------~---~-~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h 178 (196)
...+.||.|||-|+++..+ .+ .+|.-+|.++ . . ..+.++-++++..+++.||+|++-+++ |
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 3578999999999999877 22 2777777776 1 1 355666677765556899999999999 7
Q ss_pred cc--CHHHHHHHHHHhccCC
Q psy10644 179 GT--DLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~--d~~~~l~e~~rvLkpg 196 (196)
.+ |...+|+.+...|+|+
T Consensus 135 LTD~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPN 154 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 76 7899999999999985
No 160
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.5e-06 Score=66.47 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=50.7
Q ss_pred hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 114 RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 114 ~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
+.+.++.+|||||||+|..+..| ...+|+++|..+ .|+.++++|...---+...||.|+...+
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeec
Confidence 35666899999999999998888 344999999887 4788999998542224588999988776
Q ss_pred c
Q psy10644 177 L 177 (196)
Q Consensus 177 l 177 (196)
.
T Consensus 148 a 148 (209)
T COG2518 148 A 148 (209)
T ss_pred c
Confidence 5
No 161
>KOG2904|consensus
Probab=98.21 E-value=4.1e-06 Score=68.97 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCC----
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMT---- 159 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~---- 159 (196)
++.+++.+.+....++..|||+|||+|..+..+ +.+.|+++|.|+ ..+.++..+++
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence 344555555443334568999999999998777 677999999998 34555544332
Q ss_pred -CCCCCCCceeeEeecc
Q psy10644 160 -RTPLKPYSVDVAVFCL 175 (196)
Q Consensus 160 -~lp~~~~sfD~Vi~~~ 175 (196)
..++.++.+|+++++-
T Consensus 214 ~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 214 DEHPLLEGKIDLLVSNP 230 (328)
T ss_pred cccccccCceeEEecCC
Confidence 3456678999999864
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.20 E-value=4.6e-06 Score=70.14 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=49.9
Q ss_pred cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
...++.+|||||||+|.++..+ .+.+|+++|+++ .++.++.+|+...+++ .||+|+++.-
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP 110 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP 110 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence 3345789999999999999888 456899999997 2578899998776553 6899988766
Q ss_pred cccc
Q psy10644 177 LMGT 180 (196)
Q Consensus 177 lh~~ 180 (196)
.+..
T Consensus 111 Y~Is 114 (294)
T PTZ00338 111 YQIS 114 (294)
T ss_pred cccC
Confidence 5533
No 163
>PRK03612 spermidine synthase; Provisional
Probab=98.17 E-value=5.7e-06 Score=74.76 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchhHhhc---cC-CeEEEEeCCC----------------------CCceEEEecCCC-CCCCCCceeeE
Q psy10644 119 RLVIADLGCGEAKLAAEL---TQ-HKVHSLDLVA----------------------LNERVTSCDMTR-TPLKPYSVDVA 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~~-~~v~giDls~----------------------~~~~~~~~d~~~-lp~~~~sfD~V 171 (196)
..+|||||||+|..++.+ .. .+|+++|+++ ++++++.+|... +...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 568999999999999887 23 5999999987 135667777654 23335789999
Q ss_pred eecccccc-c-----CHHHHHHHHHHhccCC
Q psy10644 172 VFCLSLMG-T-----DLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~lh~-~-----d~~~~l~e~~rvLkpg 196 (196)
++...-.. . -..++++.+++.||||
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 98754321 1 1346899999999997
No 164
>KOG3420|consensus
Probab=98.16 E-value=1.7e-06 Score=65.00 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
++.+++|+|||.|-+...+ .+..|.|+|+.+ .++.+.+||+..+-+..+.||.++..--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3778999999999887444 456899999999 36789999998887778999999887655
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.14 E-value=8.8e-06 Score=65.70 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCC
Q psy10644 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTR 160 (196)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~ 160 (196)
.+|+...+..+....++.+.+|||...|-|..+... .++ +|+.++-++ .++.++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 456666665555545567899999999999998777 565 899998777 366888899865
Q ss_pred C--CCCCCceeeEeec---cccccc-CHHHHHHHHHHhccCC
Q psy10644 161 T--PLKPYSVDVAVFC---LSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 161 l--p~~~~sfD~Vi~~---~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+ .|++.+||+|+-- +++-+. --+.+.+|++|+||||
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 3 4889999998752 333222 5688999999999997
No 166
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.12 E-value=6e-05 Score=62.53 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCchh----Hhhc----c-----CCeEEEEeCCC------------------------------------
Q psy10644 118 GRLVIADLGCGEAKL----AAEL----T-----QHKVHSLDLVA------------------------------------ 148 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~----a~~l----~-----~~~v~giDls~------------------------------------ 148 (196)
...+|.-.||+||.= |..+ . ..+|+|.|++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 467999999999943 2222 1 35999999997
Q ss_pred --------CCceEEEecCCCCCCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 149 --------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 149 --------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
..|.|...|+..-++..+.||+|+|-+||.+. ...+++..++..|+||
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 25677788875544356789999999999544 5678999999999997
No 167
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.12 E-value=4.1e-06 Score=78.21 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------C--CceEEEecCCCC-CCCCCceeeEeeccc-
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------L--NERVTSCDMTRT-PLKPYSVDVAVFCLS- 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~--~~~~~~~d~~~l-p~~~~sfD~Vi~~~~- 176 (196)
+.+|||+|||+|.++..+ .+. +|+++|+|+ . ++.++++|+.+. .-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 679999999999998888 333 799999998 1 467888887542 111568999998421
Q ss_pred ----------cccc-CHHHHHHHHHHhccCC
Q psy10644 177 ----------LMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 177 ----------lh~~-d~~~~l~e~~rvLkpg 196 (196)
+... +...++..+.++|+||
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 1112 5778899999999987
No 168
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.03 E-value=5.3e-05 Score=64.62 Aligned_cols=60 Identities=17% Similarity=0.033 Sum_probs=46.1
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC--------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA--------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~--------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
.++.++|||||++|.|+..| .+.+|++||..+ +++.....|......+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 46889999999999999999 567999999887 4566666665443222677899887655
No 169
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=2.7e-05 Score=63.55 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVF 173 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~ 173 (196)
...++.+|||.|.|+|.++..|. ..+|+++|+-+ .++.+...|+.+.-.++ .||+|+.
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L 169 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL 169 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE
Confidence 44568999999999999988883 36999999988 24777888887765554 8888765
Q ss_pred cccccccCHHHHHHHHHHhccCC
Q psy10644 174 CLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
- ..++..++..+.++||||
T Consensus 170 D----mp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 170 D----LPDPWNVLEHVSDALKPG 188 (256)
T ss_pred c----CCChHHHHHHHHHHhCCC
Confidence 3 359999999999999997
No 170
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.01 E-value=3.4e-05 Score=55.23 Aligned_cols=74 Identities=28% Similarity=0.393 Sum_probs=55.5
Q ss_pred EEEEcCCCchh--HhhccC--CeEEEEeCCC--------CC-------ceEEEecCCC--CCCCC-CceeeEeecccc-c
Q psy10644 122 IADLGCGEAKL--AAELTQ--HKVHSLDLVA--------LN-------ERVTSCDMTR--TPLKP-YSVDVAVFCLSL-M 178 (196)
Q Consensus 122 ILDlGCG~G~~--a~~l~~--~~v~giDls~--------~~-------~~~~~~d~~~--lp~~~-~sfD~Vi~~~~l-h 178 (196)
++|+|||+|.. ...+.. ..++|+|+++ .. +.+...+... +++.. ..||++ +.... +
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 99999999984 333323 4899999998 11 4677777765 78877 589999 55544 5
Q ss_pred ccCHHHHHHHHHHhccCC
Q psy10644 179 GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLkpg 196 (196)
+.+....+.++.++|+|+
T Consensus 131 ~~~~~~~~~~~~~~l~~~ 148 (257)
T COG0500 131 LLPPAKALRELLRVLKPG 148 (257)
T ss_pred cCCHHHHHHHHHHhcCCC
Confidence 556889999999999984
No 171
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.98 E-value=2.1e-05 Score=68.80 Aligned_cols=79 Identities=14% Similarity=0.004 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC---------------C--CceEEEecCCCCC----CCCCceeeEee
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA---------------L--NERVTSCDMTRTP----LKPYSVDVAVF 173 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~---------------~--~~~~~~~d~~~lp----~~~~sfD~Vi~ 173 (196)
++.+|||+|||+|.++... .+. +|+++|+++ . ++.++.+|+..+- ...++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 3679999999999987654 333 899999998 1 4678888885531 13468999997
Q ss_pred ccccc---------c-cCHHHHHHHHHHhccCC
Q psy10644 174 CLSLM---------G-TDLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh---------~-~d~~~~l~e~~rvLkpg 196 (196)
.--.. . .++..++..+.++|+||
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 63221 0 14556677788899986
No 172
>KOG2899|consensus
Probab=97.98 E-value=2.1e-05 Score=63.81 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~ 148 (196)
....+|||||-.|.++..+ ....|.|+||.+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~ 92 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP 92 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccH
Confidence 3568999999999998777 345899999998
No 173
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.96 E-value=1.3e-05 Score=64.96 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=60.8
Q ss_pred CEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------C-CceEEEecCCCC---CCCCCceeeEeecccc
Q psy10644 120 LVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------L-NERVTSCDMTRT---PLKPYSVDVAVFCLSL 177 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~-~~~~~~~d~~~l---p~~~~sfD~Vi~~~~l 177 (196)
..+||||||.|.+...+ +...++|+++.. . |+.+++.|+..+ -+++++.|-|..++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 48999999999997777 566999999987 3 888898887543 2456699999888764
Q ss_pred -ccc--------CHHHHHHHHHHhccCC
Q psy10644 178 -MGT--------DLAACIKEANRILKLG 196 (196)
Q Consensus 178 -h~~--------d~~~~l~e~~rvLkpg 196 (196)
|.. =...++..+.++||||
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~g 157 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPG 157 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCC
Confidence 221 2578999999999997
No 174
>PLN02672 methionine S-methyltransferase
Probab=97.92 E-value=2.5e-05 Score=75.53 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHhhcCC--CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------C-------------
Q psy10644 100 PINPVDIIIKSIQERESK--GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------L------------- 149 (196)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~--~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~------------- 149 (196)
|......+++.|...+.. ++.+|||||||+|.++..+ ...+|+|+|+|+ .
T Consensus 98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 333344555555432211 2458999999999998887 346899999999 1
Q ss_pred -------CceEEEecCCCCCCC-CCceeeEeec
Q psy10644 150 -------NERVTSCDMTRTPLK-PYSVDVAVFC 174 (196)
Q Consensus 150 -------~~~~~~~d~~~lp~~-~~sfD~Vi~~ 174 (196)
++.++.+|+...... ...||+||++
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN 210 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGC 210 (1082)
T ss_pred ccccccccEEEEECchhhhccccCCceEEEEEC
Confidence 267788887553211 2369999986
No 175
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.91 E-value=9e-06 Score=64.93 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHhhcCCCCCEEEEEcCCCchhHhhc---cCC-eEEEEeCCC------------------------CCceEEEecCCCC
Q psy10644 110 SIQERESKGRLVIADLGCGEAKLAAEL---TQH-KVHSLDLVA------------------------LNERVTSCDMTRT 161 (196)
Q Consensus 110 ~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~-~v~giDls~------------------------~~~~~~~~d~~~l 161 (196)
.+......++...+|||||.|...... .++ +++|+++.+ ..+.+..+|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 333344556889999999999885444 455 599999998 2345556665443
Q ss_pred CCCC---CceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 162 PLKP---YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 162 p~~~---~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
++.. ...|+|+++..+...+....|.++..-||+|
T Consensus 114 ~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G 151 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPG 151 (205)
T ss_dssp HHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT
T ss_pred HhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCC
Confidence 2111 3468888888776667777888888888886
No 176
>PLN02476 O-methyltransferase
Probab=97.90 E-value=5.8e-05 Score=62.95 Aligned_cols=89 Identities=7% Similarity=-0.015 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-C
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-T 161 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-l 161 (196)
...++..+..... ..+|||||+|+|..+..+ .+.+|+++|.++ .+++++.+|+.+ +
T Consensus 106 ~g~lL~~L~~~~~--ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 106 QAQLLAMLVQILG--AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred HHHHHHHHHHhcC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 3445555554443 679999999999988877 245899999998 367888888744 2
Q ss_pred C-C----CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 162 P-L----KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 162 p-~----~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
+ + ..++||+|+.-.. -.++..++..+.++|+||
T Consensus 184 ~~l~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 184 KSMIQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVG 221 (278)
T ss_pred HHHHhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCC
Confidence 2 1 2468999877653 226788888999999987
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.90 E-value=6.2e-05 Score=64.02 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------CC------ceEEE-ecCCCC----CCCCCceeeE
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------LN------ERVTS-CDMTRT----PLKPYSVDVA 171 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~~------~~~~~-~d~~~l----p~~~~sfD~V 171 (196)
.+.+|||||||+|.++..+ .+++++|+|+++ .| +.+.. .+...+ ..+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999776655 467999999998 12 33332 222222 1246789999
Q ss_pred eeccccccc
Q psy10644 172 VFCLSLMGT 180 (196)
Q Consensus 172 i~~~~lh~~ 180 (196)
+|+--+|..
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 998877643
No 178
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.89 E-value=3.7e-05 Score=59.14 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------CCceEEEecCCCCC-----CCCCceeeEeec
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------LNERVTSCDMTRTP-----LKPYSVDVAVFC 174 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------~~~~~~~~d~~~lp-----~~~~sfD~Vi~~ 174 (196)
.+..+.-|||+|.|||.+++.+ .+..+++++.++ +.++++.+|+.++. +++..||.|+|+
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~ 124 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISG 124 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEec
Confidence 3445678999999999999988 345899999998 57788888886654 567789999999
Q ss_pred cccc-cc--CHHHHHHHHHHhccCC
Q psy10644 175 LSLM-GT--DLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~lh-~~--d~~~~l~e~~rvLkpg 196 (196)
.-+. .. -..+.|+++...|.+|
T Consensus 125 lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 125 LPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred cccccCcHHHHHHHHHHHHHhcCCC
Confidence 8773 33 4556777777777654
No 179
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.89 E-value=1.8e-05 Score=69.77 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRT----PLKPYSVDVAVFC 174 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~l----p~~~~sfD~Vi~~ 174 (196)
.++.+|||+|||+|.++..+ ...+|+|+|+++ .++.++.+|+... ++.+++||+|++.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34679999999999999988 345899999998 3678999997542 2345679998863
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.87 E-value=4.2e-05 Score=61.08 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC-
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP- 162 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp- 162 (196)
.++..+.+... ..+||||||++|..+..| .+.+|+.+|+++ .+++++.+|..+ ++
T Consensus 35 ~lL~~l~~~~~--~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~ 112 (205)
T PF01596_consen 35 QLLQMLVRLTR--PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPE 112 (205)
T ss_dssp HHHHHHHHHHT---SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHH
T ss_pred HHHHHHHHhcC--CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHH
Confidence 34444443332 568999999999887777 257999999998 367888888643 22
Q ss_pred ----CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 163 ----LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 163 ----~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
.+.+.||+|+.-.. -.++..++..+.++|+||
T Consensus 113 l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp HHHTTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEE
T ss_pred HHhccCCCceeEEEEccc--ccchhhHHHHHhhhccCC
Confidence 12468999887653 226778888888999886
No 181
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.85 E-value=5.7e-05 Score=61.97 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=55.5
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCCCC---CCceee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLK---PYSVDV 170 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~---~~sfD~ 170 (196)
...++.+|||.|.|+|.++..| +..+|+.+|..+ .++.+...|+..-.++ +..+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 4456999999999999998888 456999999988 4788999998653342 367898
Q ss_pred EeecccccccCHHHHHHHHHHhc-cCC
Q psy10644 171 AVFCLSLMGTDLAACIKEANRIL-KLG 196 (196)
Q Consensus 171 Vi~~~~lh~~d~~~~l~e~~rvL-kpg 196 (196)
|+.-. .++..+|..+.++| |||
T Consensus 117 vfLDl----p~Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 117 VFLDL----PDPWEAIPHAKRALKKPG 139 (247)
T ss_dssp EEEES----SSGGGGHHHHHHHE-EEE
T ss_pred EEEeC----CCHHHHHHHHHHHHhcCC
Confidence 76543 47888899999999 765
No 182
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.84 E-value=2.6e-05 Score=60.57 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCchhHhhc--cC---CeEEEEeCCCC----CceEEEecCCCC------C--C--CCCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQ---HKVHSLDLVAL----NERVTSCDMTRT------P--L--KPYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~---~~v~giDls~~----~~~~~~~d~~~l------p--~--~~~sfD~Vi~~~~l 177 (196)
++.++|||||++|.|++.+ .. ..|+|+|+.+. ++.++++|+.+. . + ....||+|++-.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~ 101 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAP 101 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceecccccc
Confidence 3589999999999999998 33 69999999883 556666665321 1 1 12689999987744
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.81 E-value=2.9e-05 Score=70.02 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeeccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCLS 176 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~ 176 (196)
.+..+||||||.|.+...+ +...++|+|+.. .|+.++..|+..+ -++++++|.|+.++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4678999999999987766 567999999988 3777777776432 267899999988876
Q ss_pred c-c-----cc---CHHHHHHHHHHhccCC
Q psy10644 177 L-M-----GT---DLAACIKEANRILKLG 196 (196)
Q Consensus 177 l-h-----~~---d~~~~l~e~~rvLkpg 196 (196)
= | .. --..++..++++||||
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 4 3 11 2468999999999997
No 184
>KOG1500|consensus
Probab=97.80 E-value=5.4e-05 Score=64.25 Aligned_cols=78 Identities=19% Similarity=0.129 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCchhHhhc---cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccc-c
Q psy10644 118 GRLVIADLGCGEAKLAAEL---TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-M 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l---~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h 178 (196)
.+..|||+|||.|.++... ...+|++++.|. .++.++.+-++++.+| +.+|++|+--.= +
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence 4678999999999887666 334999999987 4678888999999886 478999875432 3
Q ss_pred cc--CHHHHHHHHHHhccCC
Q psy10644 179 GT--DLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~--d~~~~l~e~~rvLkpg 196 (196)
.. -..+..-.++|.|||.
T Consensus 256 L~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPN 275 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCC
Confidence 22 3445555677899884
No 185
>KOG0820|consensus
Probab=97.80 E-value=8.5e-05 Score=61.27 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=49.2
Q ss_pred hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 114 RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 114 ~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
...+++..|||+|.|||.++..| .+.+|+++++.+ ....++.+|....++| .||+||++.
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 34556899999999999999999 778999999998 3578899998776654 588888743
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=7.8e-05 Score=61.45 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=51.6
Q ss_pred cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCC-ceeeEeeccccc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPY-SVDVAVFCLSLM 178 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~-sfD~Vi~~~~lh 178 (196)
...++..|||||+|.|.++..| .+.+|+++++++ .++.++.+|+....++.- .++.|+++.-.+
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 3445789999999999999999 566899999998 468899999988887653 578888776543
No 187
>KOG3191|consensus
Probab=97.75 E-value=7.6e-05 Score=58.16 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
...+||||||+|..+.+| ++..+.+.|++| ..+.++++|+.. .+..+++|+++++-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEEEECC
Confidence 567999999999887777 345788999999 246778888754 23348999998764
No 188
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.75 E-value=2.4e-05 Score=67.88 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~ 175 (196)
+.+|||+|||+|.++..+ .+.+|+|+|+++ .++.++.+|+..+. .....||+|++.-
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 568999999999998888 456999999998 26788888886532 1124599987753
No 189
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0011 Score=52.81 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=47.0
Q ss_pred CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeeccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFCLS 176 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~~~ 176 (196)
.++..|+||||-.|.|++.+ .+..|+|+|+.| +++.++++|+..-+ +....+|+|++-.+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence 45789999999999998888 233699999998 68999999986432 34455899986544
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.63 E-value=0.00011 Score=57.67 Aligned_cols=72 Identities=24% Similarity=0.225 Sum_probs=54.2
Q ss_pred EEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccccC
Q psy10644 121 VIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTD 181 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d 181 (196)
+++|||+|.|.-+..| +..+|+-+|... .|+.++...+++ +.....||+|++..+- .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---C
Confidence 8999999999776655 677999999998 578999999988 6667899999987763 3
Q ss_pred HHHHHHHHHHhccCC
Q psy10644 182 LAACIKEANRILKLG 196 (196)
Q Consensus 182 ~~~~l~e~~rvLkpg 196 (196)
...++.-+..+|++|
T Consensus 127 l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 127 LDKLLELARPLLKPG 141 (184)
T ss_dssp HHHHHHHHGGGEEEE
T ss_pred HHHHHHHHHHhcCCC
Confidence 455555566666653
No 191
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00018 Score=57.96 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCC----------------CCceEEE-ecCCC-
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVA----------------LNERVTS-CDMTR- 160 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~----------------~~~~~~~-~d~~~- 160 (196)
.-.++..+..... ..+|||||.+.|..+..| + ..+++++|.++ ..+.++. +|..+
T Consensus 47 ~g~~L~~L~~~~~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 47 TGALLRLLARLSG--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHHhcC--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 3455555554443 679999999999998888 3 46899999999 2456666 36533
Q ss_pred CC-CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644 161 TP-LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 161 lp-~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+. +..++||+|+.-.. . +.+.+|..+.++|+||
T Consensus 125 l~~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~G 159 (219)
T COG4122 125 LSRLLDGSFDLVFIDAD---KADYPEYLERALPLLRPG 159 (219)
T ss_pred HHhccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCC
Confidence 22 45789999875432 3 6789999999999997
No 192
>PLN02823 spermine synthase
Probab=97.60 E-value=0.00032 Score=60.09 Aligned_cols=78 Identities=19% Similarity=0.090 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~ 174 (196)
..+||.||+|.|..++.+. ..+|+.+|+++ ++++++.+|... +....++||+|++-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 4689999999999988772 24899999998 356677777644 33446789999976
Q ss_pred cccc---c----cCHHHHHH-HHHHhccCC
Q psy10644 175 LSLM---G----TDLAACIK-EANRILKLG 196 (196)
Q Consensus 175 ~~lh---~----~d~~~~l~-e~~rvLkpg 196 (196)
..=. . .--..+++ .+.+.|+||
T Consensus 184 ~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 184 LADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred CCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 3211 1 11346787 889999986
No 193
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.58 E-value=0.00043 Score=54.55 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=45.5
Q ss_pred CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCC-CC-C-CCC-ceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTR-TP-L-KPY-SVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~-lp-~-~~~-sfD~Vi~~~ 175 (196)
+.++||++||+|.++..+ .+ ..|+++|.++ .++.++.+|+.. +. + ... .||+|+.--
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 678999999999998888 33 3899999998 146778888733 22 2 122 367766544
Q ss_pred cccccCHHHHHHHH
Q psy10644 176 SLMGTDLAACIKEA 189 (196)
Q Consensus 176 ~lh~~d~~~~l~e~ 189 (196)
-+........+..+
T Consensus 130 Py~~~~~~~~l~~l 143 (189)
T TIGR00095 130 PFFNGALQALLELC 143 (189)
T ss_pred CCCCCcHHHHHHHH
Confidence 33222334444433
No 194
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.50 E-value=0.00015 Score=57.73 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
.++.+|||+-||-|.++..+ .+..|+++|++| ..+.++.+|...+.. .+.||.|++.+-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 34789999999999998887 345899999998 356788899877654 789999888664
Q ss_pred ccccCHHHHHHHHHHhccCC
Q psy10644 177 LMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~d~~~~l~e~~rvLkpg 196 (196)
-+. ..+|..+.+++|+|
T Consensus 179 ~~~---~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 179 ESS---LEFLDAALSLLKEG 195 (200)
T ss_dssp SSG---GGGHHHHHHHEEEE
T ss_pred HHH---HHHHHHHHHHhcCC
Confidence 222 34666677777653
No 195
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.48 E-value=0.00031 Score=57.69 Aligned_cols=89 Identities=8% Similarity=0.015 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-C
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-T 161 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-l 161 (196)
...++..+.+... ..+|||||+++|..+..+ .+.+|+++|.++ .++.++.++..+ +
T Consensus 67 ~g~lL~~l~~~~~--ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 67 EGQFLNMLLKLIN--AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHhC--CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 3455555544333 568999999999887766 346999999988 467888888644 2
Q ss_pred C-C-----CCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 162 P-L-----KPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 162 p-~-----~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
+ + ..++||+|++-.. -.++..++..+.++|+||
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVG 183 (247)
T ss_pred HHHHhccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCC
Confidence 2 1 1368999887644 225677778888899887
No 196
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.00064 Score=58.06 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceE-EEecCCCCCCCCCceeeEeecccc-
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERV-TSCDMTRTPLKPYSVDVAVFCLSL- 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~-~~~d~~~lp~~~~sfD~Vi~~~~l- 177 (196)
.++..|||==||||.++... .|.+++|.|++. ....+ ..+|+..+|+++.+||.|++---.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG 275 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG 275 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence 44789999999999997776 789999999998 12223 344999999999999999874322
Q ss_pred -----cccC----HHHHHHHHHHhccCC
Q psy10644 178 -----MGTD----LAACIKEANRILKLG 196 (196)
Q Consensus 178 -----h~~d----~~~~l~e~~rvLkpg 196 (196)
.... ..++|..+.++||+|
T Consensus 276 rst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 276 RSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhcC
Confidence 2222 678999999999985
No 197
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.43 E-value=0.00027 Score=55.15 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCe---------EEEEeCCC----------------CCceEEEecCCCCCCCCCc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHK---------VHSLDLVA----------------LNERVTSCDMTRTPLKPYS 167 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~---------v~giDls~----------------~~~~~~~~d~~~lp~~~~s 167 (196)
.++..|||-=||+|.+.... .... ++|+|+++ ..+.+.+.|+..+++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 44789999999999886443 3334 88999998 2467888999999988899
Q ss_pred eeeEeecccc---ccc--C----HHHHHHHHHHhccC
Q psy10644 168 VDVAVFCLSL---MGT--D----LAACIKEANRILKL 195 (196)
Q Consensus 168 fD~Vi~~~~l---h~~--d----~~~~l~e~~rvLkp 195 (196)
+|+|++..-+ ... + +..+++++.|+|++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999987654 121 1 34567788888775
No 198
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.39 E-value=0.00028 Score=59.43 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---c--CCeEEEEeCCC-------------CCceEEEecCCCCC--C
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---T--QHKVHSLDLVA-------------LNERVTSCDMTRTP--L 163 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~--~~~v~giDls~-------------~~~~~~~~d~~~lp--~ 163 (196)
.+.+++.+ .+.++..+||.+||.|..+..+ . ..+|+|+|.++ .++.++.+|..++. +
T Consensus 8 l~Evl~~L---~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDAL---AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhh---CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 34455555 3445779999999999998888 1 46999999998 15777888776542 2
Q ss_pred CCC--ceeeEeecccc
Q psy10644 164 KPY--SVDVAVFCLSL 177 (196)
Q Consensus 164 ~~~--sfD~Vi~~~~l 177 (196)
+++ +||+|++.+..
T Consensus 85 ~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 85 AEGLGKVDGILLDLGV 100 (296)
T ss_pred HcCCCccCEEEECCCc
Confidence 222 79999987765
No 199
>KOG1661|consensus
Probab=97.34 E-value=0.00048 Score=54.93 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC-------------------------CCce
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA-------------------------LNER 152 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~-------------------------~~~~ 152 (196)
...++++|... ..++...||+|.|+|.++..+ .+..++|||.-+ .++.
T Consensus 69 ha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 69 HATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 34455665421 234899999999999886555 234558988765 3567
Q ss_pred EEEecCCCCCCCCCceeeEeeccc
Q psy10644 153 VTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 153 ~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
++++|....--+...||.|++-.+
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAa 171 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAA 171 (237)
T ss_pred EEeCCccccCCccCCcceEEEccC
Confidence 888888777667789999988754
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.31 E-value=0.00028 Score=61.05 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=34.0
Q ss_pred CEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644 120 LVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR 160 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~ 160 (196)
.+|||++||+|.++..+. ..+|+|+|+++ .++.++.+|+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 479999999999999883 34899999998 267788888754
No 201
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.29 E-value=0.00098 Score=55.05 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC-------------CCceEEEecCCCCCCCC---
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKP--- 165 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~--- 165 (196)
.+.+++.+ ...++..|||||+|.|.++..| .+.+|+++|+++ .++.++.+|+..+....
T Consensus 19 ~~~Iv~~~---~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 19 ADKIVDAL---DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHH---TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHHhc---CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 34445544 3345789999999999999999 457999999998 47899999998877654
Q ss_pred CceeeEeecccc
Q psy10644 166 YSVDVAVFCLSL 177 (196)
Q Consensus 166 ~sfD~Vi~~~~l 177 (196)
+....|+++.-.
T Consensus 96 ~~~~~vv~NlPy 107 (262)
T PF00398_consen 96 NQPLLVVGNLPY 107 (262)
T ss_dssp SSEEEEEEEETG
T ss_pred CCceEEEEEecc
Confidence 345566665544
No 202
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.29 E-value=0.0005 Score=61.15 Aligned_cols=77 Identities=19% Similarity=0.196 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchhHhhccCCeEEEEeCCC---C---------CceEEEecC-CCCCCCCCceeeEeecccc-ccc---CH
Q psy10644 120 LVIADLGCGEAKLAAELTQHKVHSLDLVA---L---------NERVTSCDM-TRTPLKPYSVDVAVFCLSL-MGT---DL 182 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l~~~~v~giDls~---~---------~~~~~~~d~-~~lp~~~~sfD~Vi~~~~l-h~~---d~ 182 (196)
..|+|+.+|.|.||..|....|..+...+ + +.--+..|. +.++.-+.+||+|++...+ +.. +.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~ 446 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM 446 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH
Confidence 57999999999999999666666666555 1 111122343 5677778999999999888 433 78
Q ss_pred HHHHHHHHHhccCC
Q psy10644 183 AACIKEANRILKLG 196 (196)
Q Consensus 183 ~~~l~e~~rvLkpg 196 (196)
...+-|+-|+||||
T Consensus 447 ~~illEmDRILRP~ 460 (506)
T PF03141_consen 447 EDILLEMDRILRPG 460 (506)
T ss_pred HHHHHHhHhhcCCC
Confidence 99999999999997
No 203
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.28 E-value=0.00032 Score=60.52 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=33.9
Q ss_pred CEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644 120 LVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR 160 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~ 160 (196)
.+|||++||+|.++..+. ..+|+|+|+++ .++.++.+|+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 469999999999999883 34899999998 267788888755
No 204
>KOG3987|consensus
Probab=97.27 E-value=4.5e-05 Score=60.68 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCchhHhhccCC--eEEEEeCCC------CCceEEEecCCCCCCCCCceeeEeecccc-cccCHHHHHHHH
Q psy10644 119 RLVIADLGCGEAKLAAELTQH--KVHSLDLVA------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGTDLAACIKEA 189 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~~~--~v~giDls~------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~d~~~~l~e~ 189 (196)
..++||+|+|.|.++..+.+. +|++.++|. ....+-+....+..-.+-.+|+|.|...| -+.++-+.++.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di 192 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDI 192 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHHH
Confidence 478999999999999999554 789999888 11122222222222234579999999999 577999999999
Q ss_pred HHhccC
Q psy10644 190 NRILKL 195 (196)
Q Consensus 190 ~rvLkp 195 (196)
+-+|+|
T Consensus 193 ~~vl~p 198 (288)
T KOG3987|consen 193 HLVLAP 198 (288)
T ss_pred HHHhcc
Confidence 999988
No 205
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.25 E-value=0.0011 Score=54.71 Aligned_cols=78 Identities=22% Similarity=0.384 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCchhHhhc--cC--CeEEEEeCCC-------------------------------------------CC
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQ--HKVHSLDLVA-------------------------------------------LN 150 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~--~~v~giDls~-------------------------------------------~~ 150 (196)
++.++||||||.-.. ..| .. .+|+..|.++ ..
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 467899999998544 333 12 2788888877 01
Q ss_pred c-eEEEecCCCC-CCCC-----CceeeEeeccccc--cc---CHHHHHHHHHHhccCC
Q psy10644 151 E-RVTSCDMTRT-PLKP-----YSVDVAVFCLSLM--GT---DLAACIKEANRILKLG 196 (196)
Q Consensus 151 ~-~~~~~d~~~l-p~~~-----~sfD~Vi~~~~lh--~~---d~~~~l~e~~rvLkpg 196 (196)
+ .++.||+... |+.. ..||+|+++++|- .. ....+++.+.++||||
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 2 4778998653 3433 3599999999993 22 5678899999999997
No 206
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.21 E-value=0.0069 Score=51.59 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC---------------CCceE--EEecCCC----CCC--CCC
Q psy10644 118 GRLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA---------------LNERV--TSCDMTR----TPL--KPY 166 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~---------------~~~~~--~~~d~~~----lp~--~~~ 166 (196)
++..|+|+|||.|.=++.| ....++++|+|. +.+.+ +.+|... ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3668999999999765544 135799999997 23433 5566533 221 123
Q ss_pred ceeeEeecc-ccc-cc--CHHHHHHHHHH-hccCC
Q psy10644 167 SVDVAVFCL-SLM-GT--DLAACIKEANR-ILKLG 196 (196)
Q Consensus 167 sfD~Vi~~~-~lh-~~--d~~~~l~e~~r-vLkpg 196 (196)
...+|++.. ++. .. +...+|+++++ .|+||
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 456666655 443 22 55678999999 99886
No 207
>KOG4589|consensus
Probab=97.21 E-value=0.00097 Score=52.36 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEe-cCCCC--------CCCCCceeeEeecccc
Q psy10644 117 KGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSC-DMTRT--------PLKPYSVDVAVFCLSL 177 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~-d~~~l--------p~~~~sfD~Vi~~~~l 177 (196)
.++.+|||+||-.|.|++-. ++..|.|+|+-. .++.++.+ |+.+- .+|+..+|+|++-++-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMap 146 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAP 146 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCC
Confidence 45889999999999998776 566899999876 56666666 55431 2567889999876554
No 208
>KOG2352|consensus
Probab=97.15 E-value=0.00092 Score=59.22 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=63.4
Q ss_pred CEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccccc--
Q psy10644 120 LVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-- 180 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-- 180 (196)
.++|-+|||.-.+...+ .+ ..|+.+|+|+ ....+...|+..+.|++++||+|+.-..++..
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 38999999999998888 23 3899999999 34678899999999999999999998888422
Q ss_pred C---------HHHHHHHHHHhccCC
Q psy10644 181 D---------LAACIKEANRILKLG 196 (196)
Q Consensus 181 d---------~~~~l~e~~rvLkpg 196 (196)
+ ....+.+++|+|++|
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~ 154 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPG 154 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccC
Confidence 2 234688999999986
No 209
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.00017 Score=54.79 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=50.1
Q ss_pred EEEEEcCCCchhHhhccCCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644 121 VIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l~~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
-.+-||||.=.+. +++..+-+.-.+ .+.+++-.....+|.++++|+|.+.+++ |.+ .-..++++++|+||||
T Consensus 5 ~kv~ig~G~~r~n---pgWi~~d~ed~~-~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~ 79 (185)
T COG4627 5 EKVKIGAGGKRVN---PGWIITDVEDRP-EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPG 79 (185)
T ss_pred eEEEEeccccccC---CCceeeehhccc-ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence 3678999975443 344333222222 3343333335578999999999999999 876 6778999999999997
No 210
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.11 E-value=0.0012 Score=57.65 Aligned_cols=75 Identities=23% Similarity=0.157 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchhHhhcc---C-CeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 119 RLVIADLGCGEAKLAAELT---Q-HKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~---~-~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
+.+|||++||+|.++..+. + ..|+++|+++ .++.+...|+..+......||+|++.- . +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-C
Confidence 4689999999999988872 2 3899999998 234577777755321145799988743 2 2
Q ss_pred cCHHHHHHHHHHhccCC
Q psy10644 180 TDLAACIKEANRILKLG 196 (196)
Q Consensus 180 ~d~~~~l~e~~rvLkpg 196 (196)
....++..+.+.+++|
T Consensus 136 -s~~~~l~~al~~~~~~ 151 (382)
T PRK04338 136 -SPAPFLDSAIRSVKRG 151 (382)
T ss_pred -CcHHHHHHHHHHhcCC
Confidence 2456777766666664
No 211
>KOG3178|consensus
Probab=97.05 E-value=0.0037 Score=53.32 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCchhHhhc-c-CCeEEEEeCCC-----------CCceEEEecCCCCCCCCCceeeEeecccc-ccc--CH
Q psy10644 119 RLVIADLGCGEAKLAAEL-T-QHKVHSLDLVA-----------LNERVTSCDMTRTPLKPYSVDVAVFCLSL-MGT--DL 182 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l-~-~~~v~giDls~-----------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l-h~~--d~ 182 (196)
-...+|+|.|.|..+..+ . -.+|-+++... +++..+.+|+..- .|.+ |+|++.++| |++ |-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDedc 254 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDEDC 254 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHHH
Confidence 367899999999998888 2 12355555443 2356777777443 4433 599999999 566 78
Q ss_pred HHHHHHHHHhccCC
Q psy10644 183 AACIKEANRILKLG 196 (196)
Q Consensus 183 ~~~l~e~~rvLkpg 196 (196)
.++|++++.-|+||
T Consensus 255 vkiLknC~~sL~~~ 268 (342)
T KOG3178|consen 255 VKILKNCKKSLPPG 268 (342)
T ss_pred HHHHHHHHHhCCCC
Confidence 89999999999986
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.04 E-value=0.0079 Score=48.37 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=44.8
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
..+++|||.|.|.-+..+ +..+|+-+|... .|+.++.+.++++.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 479999999999776554 566899999877 5788998888887642222999998654
No 213
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.04 E-value=0.0043 Score=55.51 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=56.5
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCCC-CCCCceeeEee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRTP-LKPYSVDVAVF 173 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~lp-~~~~sfD~Vi~ 173 (196)
.+.++.+|||++||.|.=+-.+ ....|+++|+++ .++.+...|...++ ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 3456889999999999765555 235899999998 35666777766542 33467999984
Q ss_pred ---cccc-ccc-C------------------HHHHHHHHHHhccCC
Q psy10644 174 ---CLSL-MGT-D------------------LAACIKEANRILKLG 196 (196)
Q Consensus 174 ---~~~l-h~~-d------------------~~~~l~e~~rvLkpg 196 (196)
|... +.- + ..++|..+.++||||
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG 235 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG 235 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2211 111 1 156789999999997
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=97.03 E-value=0.0047 Score=51.17 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchhHhhccCC--eEEEEeCCC-------------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 118 GRLVIADLGCGEAKLAAELTQH--KVHSLDLVA-------------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~~~--~v~giDls~-------------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
...+||=||.|.|..++.+..+ +|+-+|+++ ++++++. .+. ....++||+||.-..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQE 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcCC
Confidence 3579999999999999999433 899999988 3444443 111 112368999986632
Q ss_pred ccccCHHHHHHHHHHhccCC
Q psy10644 177 LMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 177 lh~~d~~~~l~e~~rvLkpg 196 (196)
..+.+++.++|+|+||
T Consensus 149 ----~~~~fy~~~~~~L~~~ 164 (262)
T PRK00536 149 ----PDIHKIDGLKRMLKED 164 (262)
T ss_pred ----CChHHHHHHHHhcCCC
Confidence 4478889999999986
No 215
>KOG1709|consensus
Probab=97.01 E-value=0.0028 Score=50.92 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=63.5
Q ss_pred hcCCCChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhcc---CCeEEEEeCCC--------------CCceEEEecCC
Q psy10644 97 TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELT---QHKVHSLDLVA--------------LNERVTSCDMT 159 (196)
Q Consensus 97 ~~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l~---~~~v~giDls~--------------~~~~~~~~d~~ 159 (196)
.+|...-.....+.+. .++.+||.||-|-|...-.++ ..+=+-++..| .|+-+..+--+
T Consensus 84 m~WEtpiMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 84 MRWETPIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hhhhhHHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH
Confidence 3663333333333333 457899999999999877773 33334455555 35544444433
Q ss_pred CC--CCCCCceeeEeecccc-cccCHHHHHHHHHHhccCC
Q psy10644 160 RT--PLKPYSVDVAVFCLSL-MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 160 ~l--p~~~~sfD~Vi~~~~l-h~~d~~~~l~e~~rvLkpg 196 (196)
+. .++++.||.|+.---- |..|...+...+.|+|||+
T Consensus 160 Dvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred hhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCC
Confidence 32 3678899998764433 7779999999999999996
No 216
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.003 Score=52.84 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=57.3
Q ss_pred CEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCCceeeEeecc
Q psy10644 120 LVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPYSVDVAVFCL 175 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~sfD~Vi~~~ 175 (196)
.+||-||-|.|..++.+. -.+++.+|+.+ +++.++..|..+ +.-...+||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999993 24899999998 355677777644 232234899988755
Q ss_pred ccc-cc----CHHHHHHHHHHhccCC
Q psy10644 176 SLM-GT----DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~lh-~~----d~~~~l~e~~rvLkpg 196 (196)
.=. +. --..+++.++|+|+++
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCC
Confidence 433 11 2478999999999985
No 217
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.94 E-value=0.0033 Score=44.92 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=41.3
Q ss_pred HHHHHHHHHH-hhhhcCCCC--hHHHHHHH----------HHh-hcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCC
Q psy10644 84 SFEAYHEGFK-KQVTQWPIN--PVDIIIKS----------IQE-RESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLV 147 (196)
Q Consensus 84 ~f~~y~~~y~-~~~~~w~~~--~~~~~~~~----------l~~-~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls 147 (196)
.|......|. ..++.|++. |...+.+- ... ....+...-+|||||.|.+...| .|+.-.|+|.-
T Consensus 10 ~Y~~LK~kYa~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 10 TYQRLKEKYARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 3444555563 556678753 44433322 111 12223567999999999998888 67788999986
Q ss_pred C
Q psy10644 148 A 148 (196)
Q Consensus 148 ~ 148 (196)
.
T Consensus 90 ~ 90 (112)
T PF07757_consen 90 R 90 (112)
T ss_pred c
Confidence 6
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.94 E-value=0.0037 Score=49.23 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeeccc---cc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCLS---LM 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~---lh 178 (196)
.....|+|+|+|.++... ...+|++++..| .|+.++.+|+....| ...|+|+|-+. |.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 367999999999998776 344999999998 367888999888877 45688776432 12
Q ss_pred ccCHHHHHHHHHHhcc
Q psy10644 179 GTDLAACIKEANRILK 194 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLk 194 (196)
.......++.+...||
T Consensus 111 ~E~qVpV~n~vleFLr 126 (252)
T COG4076 111 EEKQVPVINAVLEFLR 126 (252)
T ss_pred cccccHHHHHHHHHhh
Confidence 2245556666666655
No 219
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.87 E-value=0.0041 Score=51.81 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcC-CCCCEEEEEcCCCchhHhhc----c-CCeEEEEeCCCC-------------CceE--EEecC--CC
Q psy10644 104 VDIIIKSIQERES-KGRLVIADLGCGEAKLAAEL----T-QHKVHSLDLVAL-------------NERV--TSCDM--TR 160 (196)
Q Consensus 104 ~~~~~~~l~~~~~-~~~~~ILDlGCG~G~~a~~l----~-~~~v~giDls~~-------------~~~~--~~~d~--~~ 160 (196)
+..++..|....+ -...+|||+|||.|..+-.+ . -.+++++|.|+. +... ..... ..
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 97 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF 97 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc
Confidence 3344555544322 23568999999999664433 2 348999999981 1000 00111 11
Q ss_pred CCCCCCceeeEeeccccccc---CHHHHHHHHHHhcc
Q psy10644 161 TPLKPYSVDVAVFCLSLMGT---DLAACIKEANRILK 194 (196)
Q Consensus 161 lp~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLk 194 (196)
.++. ..|+|++.++|... ....+++.+.+.+.
T Consensus 98 ~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~ 132 (274)
T PF09243_consen 98 LPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTA 132 (274)
T ss_pred ccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhcc
Confidence 2232 23999999999433 45556666655443
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.80 E-value=0.0031 Score=51.75 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchhHhhcc----CCeEEEEeCCC-------------------CCceEEEecCCC-CCCCCC-ceeeEe
Q psy10644 118 GRLVIADLGCGEAKLAAELT----QHKVHSLDLVA-------------------LNERVTSCDMTR-TPLKPY-SVDVAV 172 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~----~~~v~giDls~-------------------~~~~~~~~d~~~-lp~~~~-sfD~Vi 172 (196)
+..+||=||-|.|..++.+. ..+|+.+|+++ ++++++..|... +.-..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 36799999999999999983 24899999998 367888888643 222233 899998
Q ss_pred ecccc-ccc----CHHHHHHHHHHhccCC
Q psy10644 173 FCLSL-MGT----DLAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~~~l-h~~----d~~~~l~e~~rvLkpg 196 (196)
.-..- ... --..+++.+.++|+||
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 74432 111 2468999999999875
No 221
>KOG2798|consensus
Probab=96.77 E-value=0.0039 Score=52.63 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhcCC-----CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------------------
Q psy10644 104 VDIIIKSIQERESK-----GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA---------------------------- 148 (196)
Q Consensus 104 ~~~~~~~l~~~~~~-----~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~---------------------------- 148 (196)
+..+++.|..+.+. ...+||-=|||.|+++..| .+..+-|-+.|.
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 45678888776553 3467888899999998887 233333323322
Q ss_pred ---------------------------CCceEEEecCCCC---CCCCCceeeEeeccccc-ccCHHHHHHHHHHhccCC
Q psy10644 149 ---------------------------LNERVTSCDMTRT---PLKPYSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196 (196)
Q Consensus 149 ---------------------------~~~~~~~~d~~~l---p~~~~sfD~Vi~~~~lh-~~d~~~~l~e~~rvLkpg 196 (196)
.......+|..+. +-..++||+|+.|+-+- ..|...+|..+..+||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 0111223443221 12235799999997663 448999999999999997
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.76 E-value=0.0051 Score=45.95 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCchhHhhcc--------CCeEEEEeCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAELT--------QHKVHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l~--------~~~v~giDls~ 148 (196)
.+...|+|+|||.|.++..|. +.+|+++|.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence 346799999999999988872 35999999998
No 223
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.62 E-value=0.00083 Score=51.73 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=36.2
Q ss_pred EEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCCCC--CCCCc-eeeEeec
Q psy10644 121 VIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTRTP--LKPYS-VDVAVFC 174 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~lp--~~~~s-fD~Vi~~ 174 (196)
+|+|+-||.|..+..| ...+|+++|+++ .++.++.+|..++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999888 344899999999 37899999975531 22222 8999865
No 224
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.60 E-value=0.0052 Score=53.01 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=29.9
Q ss_pred EEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644 121 VIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR 160 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~ 160 (196)
.|||+=||.|.++..|. ..+|+|+|+++ .|+.|+..++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 89999999999999993 45999999997 478888776644
No 225
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.59 E-value=0.015 Score=48.56 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred CEEEEEcCCCchhHhhc------cCCeEEEEeCCC-----------------CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 120 LVIADLGCGEAKLAAEL------TQHKVHSLDLVA-----------------LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l------~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
.+|+=||||.==++..+ .+..|+++|+++ ..+.|+.+|....+..-..||+|+...-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 59999999965443332 356899999998 4678999998776655578999877665
Q ss_pred c-ccc-CHHHHHHHHHHhccCC
Q psy10644 177 L-MGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 177 l-h~~-d~~~~l~e~~rvLkpg 196 (196)
. +.. +..+.|..+.+.++||
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TT
T ss_pred cccccchHHHHHHHHHhhCCCC
Confidence 5 544 8999999999999987
No 226
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.47 E-value=0.0032 Score=53.01 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----------cCCeEEEEeCCC-----------------CCceEEEecCCCCCCC--
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----------TQHKVHSLDLVA-----------------LNERVTSCDMTRTPLK-- 164 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----------~~~~v~giDls~-----------------~~~~~~~~d~~~lp~~-- 164 (196)
.+.++.+|+|-.||+|.+...+ ....++|+|+++ .+..+...|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 3344678999999999985444 245899999998 1234667776443332
Q ss_pred CCceeeEeecccc
Q psy10644 165 PYSVDVAVFCLSL 177 (196)
Q Consensus 165 ~~sfD~Vi~~~~l 177 (196)
...||+|++.--+
T Consensus 123 ~~~~D~ii~NPPf 135 (311)
T PF02384_consen 123 NQKFDVIIGNPPF 135 (311)
T ss_dssp T--EEEEEEE--C
T ss_pred ccccccccCCCCc
Confidence 4789999986543
No 227
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.34 E-value=0.0035 Score=49.15 Aligned_cols=77 Identities=16% Similarity=0.046 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC----------------CCceEEEecCCC-CC---CCCCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA----------------LNERVTSCDMTR-TP---LKPYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~----------------~~~~~~~~d~~~-lp---~~~~sfD~Vi~~~ 175 (196)
+.++||+=||+|.++... .| .+|+.+|.++ ..+.++..|... ++ .....||+|++--
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 789999999999998766 34 4999999998 235677777532 22 2468999998765
Q ss_pred cccccC-HHHHHHHHH--HhccC
Q psy10644 176 SLMGTD-LAACIKEAN--RILKL 195 (196)
Q Consensus 176 ~lh~~d-~~~~l~e~~--rvLkp 195 (196)
-..... ...++..+. .+|++
T Consensus 123 PY~~~~~~~~~l~~l~~~~~l~~ 145 (183)
T PF03602_consen 123 PYAKGLYYEELLELLAENNLLNE 145 (183)
T ss_dssp STTSCHHHHHHHHHHHHTTSEEE
T ss_pred CcccchHHHHHHHHHHHCCCCCC
Confidence 554333 366666665 45554
No 228
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.0086 Score=53.08 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCCCCCC---CCceeeEee
Q psy10644 117 KGRLVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTRTPLK---PYSVDVAVF 173 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~lp~~---~~sfD~Vi~ 173 (196)
.++.++||+=||.|.|+..|. ..+|+|+|+++ .|+.|+.++.+.+... ...+|.|+.
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 346799999999999999994 45999999998 4788999998775433 347888874
No 229
>KOG1663|consensus
Probab=96.11 E-value=0.029 Score=45.39 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCC-CC-----CCCCceeeE
Q psy10644 119 RLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTR-TP-----LKPYSVDVA 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~-lp-----~~~~sfD~V 171 (196)
..++||||.=||.-+..+ .+.+|+++|+++ ..+.+++++..+ ++ .+.++||+|
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 468999998888554433 567999999998 467788877532 21 356899997
Q ss_pred eeccccccc-CHHHHHHHHHHhccCC
Q psy10644 172 VFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+.- |+. +....+.++.++||+|
T Consensus 154 FvD---adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 154 FVD---ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred EEc---cchHHHHHHHHHHHhhcccc
Confidence 643 334 5568899999999987
No 230
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.03 E-value=0.016 Score=50.61 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCCC-C---CCCCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTRT-P---LKPYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~l-p---~~~~sfD~Vi~~ 174 (196)
+.+|||+=|=||.++... .|+ +|+++|+|. ..+.++++|+-.+ . -....||+|++-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 789999999999998777 466 999999998 2457888887442 2 234589999863
Q ss_pred c--------ccc-cc-CHHHHHHHHHHhccCC
Q psy10644 175 L--------SLM-GT-DLAACIKEANRILKLG 196 (196)
Q Consensus 175 ~--------~lh-~~-d~~~~l~e~~rvLkpg 196 (196)
- ... .. ++...+..+.++|+||
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 2 111 12 7788899999999986
No 231
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.98 E-value=0.034 Score=52.27 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=36.4
Q ss_pred eEEEEeCCC----------------CCceEEEecCCCCCCC--CCceeeEeecccc---ccc--CHHHHHHHHHHhcc
Q psy10644 140 KVHSLDLVA----------------LNERVTSCDMTRTPLK--PYSVDVAVFCLSL---MGT--DLAACIKEANRILK 194 (196)
Q Consensus 140 ~v~giDls~----------------~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l---h~~--d~~~~l~e~~rvLk 194 (196)
+|+|+|+++ ..+.+..+|+.+++.+ .++||+|+++--. ... +...+..++.+.||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 699999998 2367889999877654 3579999998554 121 34445444444444
No 232
>KOG2730|consensus
Probab=95.94 E-value=0.0076 Score=48.55 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC----------------CCceEEEecCCC----CCCCCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA----------------LNERVTSCDMTR----TPLKPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~----------------~~~~~~~~d~~~----lp~~~~sfD~Vi~~~~ 176 (196)
...|+|.-||.|..+..+ .+..|+++|++| .++.|+++|+.. +.+....+|+|+.+--
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence 457888877777665544 678999999999 367899999743 3455556777775543
No 233
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.89 E-value=0.027 Score=46.21 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCCCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKP 165 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp~~~ 165 (196)
++.+.+.+...- ....+|+|||||.-=++... .+..++|+|++. .+..+...|+..-+ +.
T Consensus 92 Ld~fY~~if~~~-~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 92 LDEFYDEIFGRI-PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp HHHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TT
T ss_pred HHHHHHHHHhcC-CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CC
Confidence 666676665432 22679999999988776655 346999999998 46778888875543 46
Q ss_pred CceeeEeeccccccc
Q psy10644 166 YSVDVAVFCLSLMGT 180 (196)
Q Consensus 166 ~sfD~Vi~~~~lh~~ 180 (196)
...|+++..-++|..
T Consensus 170 ~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 170 EPADLALLLKTLPCL 184 (251)
T ss_dssp SEESEEEEET-HHHH
T ss_pred CCcchhhHHHHHHHH
Confidence 789999998888754
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.87 E-value=0.0072 Score=44.66 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.0
Q ss_pred EEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644 121 VIADLGCGEAKLAAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l----~~~~v~giDls~ 148 (196)
+|||+|||.|.++..+ .+.+|+++|.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 4899999999998777 344899999998
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.80 E-value=0.023 Score=45.04 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCchhHhhcc-----CCeEEEEeCCC---------------------CCceEEEecCCCCCCCCCceee
Q psy10644 117 KGRLVIADLGCGEAKLAAELT-----QHKVHSLDLVA---------------------LNERVTSCDMTRTPLKPYSVDV 170 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l~-----~~~v~giDls~---------------------~~~~~~~~d~~~lp~~~~sfD~ 170 (196)
+++.+|+|+=.|.|.|++.|. ...|+++=..+ .|+..+-.+.-.++ +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 458999999999999999992 33788874333 24444444444444 4556677
Q ss_pred Eeecccc--------cccCHHHHHHHHHHhccCC
Q psy10644 171 AVFCLSL--------MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 171 Vi~~~~l--------h~~d~~~~l~e~~rvLkpg 196 (196)
++-.... |.-...++.+++++.||||
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG 159 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG 159 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence 6654433 2225778999999999998
No 236
>KOG2915|consensus
Probab=95.79 E-value=0.066 Score=44.54 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----------------CCceEEEecCCCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----------------LNERVTSCDMTRTP 162 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----------------~~~~~~~~d~~~lp 162 (196)
...|+..| ...++.+||+-|.|+|.++..+ +..+++.+|... .++.++.-|+....
T Consensus 94 ia~I~~~L---~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSML---EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHh---cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 45555555 3445899999999999997777 446999999987 47889999987654
Q ss_pred C--CCCceeeEeec
Q psy10644 163 L--KPYSVDVAVFC 174 (196)
Q Consensus 163 ~--~~~sfD~Vi~~ 174 (196)
| .+..+|.|+.-
T Consensus 171 F~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 171 FLIKSLKADAVFLD 184 (314)
T ss_pred ccccccccceEEEc
Confidence 4 45778887753
No 237
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.79 E-value=0.079 Score=44.49 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchhHhhc----c--CCeEEEEeCCC---------------CCc-eEEEecCCCC-CCC--CCceeeEe
Q psy10644 118 GRLVIADLGCGEAKLAAEL----T--QHKVHSLDLVA---------------LNE-RVTSCDMTRT-PLK--PYSVDVAV 172 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l----~--~~~v~giDls~---------------~~~-~~~~~d~~~l-p~~--~~sfD~Vi 172 (196)
...+||||.||.|...... + ...|.-.|.++ .++ +|.++|+.+. .+. .-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4679999999999875544 2 24888899998 344 8888887542 111 22458888
Q ss_pred ecccc-cccC---HHHHHHHHHHhccCC
Q psy10644 173 FCLSL-MGTD---LAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~~~l-h~~d---~~~~l~e~~rvLkpg 196 (196)
.+..+ .+.| ....|.-+.++|.||
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 88777 3443 455788899998886
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.076 Score=43.26 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchhHhhc--c-CCeEEEEeCCCC--------Cce---EEEecCCCCC---CCCCceeeEeeccccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--T-QHKVHSLDLVAL--------NER---VTSCDMTRTP---LKPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~~--------~~~---~~~~d~~~lp---~~~~sfD~Vi~~~~lh~~ 180 (196)
++..+||+|.-||.|+..+ . ..+|+++|.... +.+ +...|+..+. +. +..|+|++-.++-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI-- 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI-- 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh--
Confidence 4789999999999999988 3 349999998771 222 2333444332 22 2567877766542
Q ss_pred CHHHHHHHHHHhccCC
Q psy10644 181 DLAACIKEANRILKLG 196 (196)
Q Consensus 181 d~~~~l~e~~rvLkpg 196 (196)
.....|..+..+|+|+
T Consensus 156 SL~~iLp~l~~l~~~~ 171 (245)
T COG1189 156 SLKLILPALLLLLKDG 171 (245)
T ss_pred hHHHHHHHHHHhcCCC
Confidence 3355566666666553
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.69 E-value=0.02 Score=45.41 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC--------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~--------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
.+.+|||+|.|.|..+... .+ ..|++.|+.| .++.++..|+-. .+..||+|+...++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 4789999999999875554 33 3788888887 133444444322 677899999999884
No 240
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.51 E-value=0.022 Score=45.47 Aligned_cols=53 Identities=28% Similarity=0.271 Sum_probs=35.7
Q ss_pred EEEEcCCCchhHhhc--cCC--eEEEEeCCC----------------CCceEEEecCCCCCCCCCc-eeeEeecc
Q psy10644 122 IADLGCGEAKLAAEL--TQH--KVHSLDLVA----------------LNERVTSCDMTRTPLKPYS-VDVAVFCL 175 (196)
Q Consensus 122 ILDlGCG~G~~a~~l--~~~--~v~giDls~----------------~~~~~~~~d~~~lp~~~~s-fD~Vi~~~ 175 (196)
|+||||-.|.+...| .+. +++++|+++ ..+.+..+|... +++++. +|+|+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEec
Confidence 689999999999999 333 899999998 357888888543 233443 78877654
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.50 E-value=0.021 Score=51.70 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCchhHhhc----c--------CCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL----T--------QHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~--------~~~v~giDls~ 148 (196)
..+|||.|||+|.+...+ . ...++|+|+++
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~ 73 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK 73 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH
Confidence 568999999999996655 1 14789999988
No 242
>KOG0822|consensus
Probab=95.44 E-value=0.067 Score=48.25 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC---------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
..+|+=+|+|-|-+.... ...++++++-+| ..+.++.+||..++-|....|++|+-+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 346788999999775444 233788888887 468899999999986668899988754
Q ss_pred cc-ccc--CHHHHHHHHHHhccCC
Q psy10644 176 SL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
.= .+. =-+++|.-+-+.|||+
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCC
Confidence 32 333 2578999999999984
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.36 E-value=0.062 Score=43.41 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=53.1
Q ss_pred HHhhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC-------------CCceEEEecCCCC---CCCCCcee
Q psy10644 111 IQERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA-------------LNERVTSCDMTRT---PLKPYSVD 169 (196)
Q Consensus 111 l~~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~-------------~~~~~~~~d~~~l---p~~~~sfD 169 (196)
+...+.+++.+||-+|..+|.....+ ....|++++.|+ .|+--+.+|+..- ..--+.+|
T Consensus 66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EE
T ss_pred ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhccccccc
Confidence 33445567899999999999887776 356999999999 6888888888531 11124788
Q ss_pred eEeecccccccCHHHHHHHHHHhccCC
Q psy10644 170 VAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 170 ~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
+|++--+ +-.+..-++..+...||+|
T Consensus 146 vI~~DVa-Qp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 146 VIFQDVA-QPDQARIAALNARHFLKPG 171 (229)
T ss_dssp EEEEE-S-STTHHHHHHHHHHHHEEEE
T ss_pred EEEecCC-ChHHHHHHHHHHHhhccCC
Confidence 8665433 3334455666777777764
No 244
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.33 E-value=0.037 Score=47.49 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh 178 (196)
++.+|||+=||-|-++..+ .+. .|+++|++| ..+..+.+|...++...+.+|-|++.+.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~- 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK- 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-
Confidence 4889999999999998888 333 499999999 23678899998877655889999887653
Q ss_pred ccCHHHHHHHHHHhccC
Q psy10644 179 GTDLAACIKEANRILKL 195 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLkp 195 (196)
+-.+++..+.+.||+
T Consensus 267 --~a~~fl~~A~~~~k~ 281 (341)
T COG2520 267 --SAHEFLPLALELLKD 281 (341)
T ss_pred --cchhhHHHHHHHhhc
Confidence 223344444444443
No 245
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.89 E-value=0.34 Score=40.29 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCc------hhHhhc-cCCeEEEEeCCC-------------CC--ceEEEecCCCCC--CC----CCcee-
Q psy10644 119 RLVIADLGCGEA------KLAAEL-TQHKVHSLDLVA-------------LN--ERVTSCDMTRTP--LK----PYSVD- 169 (196)
Q Consensus 119 ~~~ILDlGCG~G------~~a~~l-~~~~v~giDls~-------------~~--~~~~~~d~~~lp--~~----~~sfD- 169 (196)
-...||||||-- .+++.. +.++|+-+|+.| .+ ..++.+|+.+.. +. .+-+|
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 357899999944 234444 678999999999 34 678999986421 11 12333
Q ss_pred ----eEeeccccccc----CHHHHHHHHHHhccCC
Q psy10644 170 ----VAVFCLSLMGT----DLAACIKEANRILKLG 196 (196)
Q Consensus 170 ----~Vi~~~~lh~~----d~~~~l~e~~rvLkpg 196 (196)
.|+++.+||+. ++..+++.++..|-||
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 36677777754 6889999999999887
No 246
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.84 E-value=0.034 Score=48.40 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=51.8
Q ss_pred CCEEEEEcCCCchhHhhc-c---C-CeEEEEeCCC---------------CCceEEEecCCCC-CCCCCceeeEeecccc
Q psy10644 119 RLVIADLGCGEAKLAAEL-T---Q-HKVHSLDLVA---------------LNERVTSCDMTRT-PLKPYSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l-~---~-~~v~giDls~---------------~~~~~~~~d~~~l-p~~~~sfD~Vi~~~~l 177 (196)
+.+|||+-||+|..+..+ . + .+|+++|+++ .++.++..|+..+ ......||+|..-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 358999999999998887 2 2 4899999999 2356777776543 21235799887643 3
Q ss_pred cccCHHHHHHHHHHhccCC
Q psy10644 178 MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLkpg 196 (196)
+ .+..++..+.+.+++|
T Consensus 124 -G-s~~~fld~al~~~~~~ 140 (374)
T TIGR00308 124 -G-TPAPFVDSAIQASAER 140 (374)
T ss_pred -C-CcHHHHHHHHHhcccC
Confidence 1 3356777777777653
No 247
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.84 E-value=0.11 Score=44.49 Aligned_cols=65 Identities=22% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCCCCEEEEEcCCCchhHhhc-------------c-C------CeEEEEeCCC--------------------CCceE--
Q psy10644 116 SKGRLVIADLGCGEAKLAAEL-------------T-Q------HKVHSLDLVA--------------------LNERV-- 153 (196)
Q Consensus 116 ~~~~~~ILDlGCG~G~~a~~l-------------~-~------~~v~giDls~--------------------~~~~~-- 153 (196)
..+..+|+|+||..|..+..+ . + ..|+--|+-. .++.+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344679999999999876555 0 1 2666668765 12211
Q ss_pred EEecCCCCCCCCCceeeEeeccccccc
Q psy10644 154 TSCDMTRTPLKPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 154 ~~~d~~~lp~~~~sfD~Vi~~~~lh~~ 180 (196)
+-+..-+--+|+++.|+++++.+|||.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-
T ss_pred cCchhhhccCCCCceEEEEEechhhhc
Confidence 223333434889999999999999976
No 248
>KOG2187|consensus
Probab=94.64 E-value=0.045 Score=49.08 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCchhHhhcc--CCeEEEEeCCC---------------CCceEEEecCCC
Q psy10644 118 GRLVIADLGCGEAKLAAELT--QHKVHSLDLVA---------------LNERVTSCDMTR 160 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~--~~~v~giDls~---------------~~~~~~~~d~~~ 160 (196)
.+..+||+-||||.++..+. -.+|+|+++++ .|+.|+++..++
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 36789999999999999993 34999999998 478899885544
No 249
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.54 E-value=0.04 Score=46.27 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC-----------------CCceEEEecCCC-CC--CCCCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA-----------------LNERVTSCDMTR-TP--LKPYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~-----------------~~~~~~~~d~~~-lp--~~~~sfD~Vi~~~ 175 (196)
+.+|||+=|=||.++... .|+ +|+++|.|. ..+.+++.|+.. +. -..+.||+||+--
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 779999999999998765 343 899999998 356788888743 21 1246899998732
Q ss_pred c-c----c-cc-CHHHHHHHHHHhccCC
Q psy10644 176 S-L----M-GT-DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~-l----h-~~-d~~~~l~e~~rvLkpg 196 (196)
- + . .. ++..++..+.++|+||
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 1 1 12 6777888888888875
No 250
>KOG3201|consensus
Probab=94.23 E-value=0.015 Score=44.82 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCchhHhhc-----cCCeEEEEeCCCC-----------C--ceEEEe-----cCC--CCCCCCCceeeEee
Q psy10644 119 RLVIADLGCGEAKLAAEL-----TQHKVHSLDLVAL-----------N--ERVTSC-----DMT--RTPLKPYSVDVAVF 173 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~~-----------~--~~~~~~-----d~~--~lp~~~~sfD~Vi~ 173 (196)
+..||++|.|--.++-.| ....|.-.|-++. | .....| +.. ........||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 467999999965555444 4457888887761 1 111111 111 11223458999999
Q ss_pred ccccccc-CHHHHHHHHHHhccCC
Q psy10644 174 CLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 174 ~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
..++.+. .....++.|.+.|+|.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~ 133 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPS 133 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcc
Confidence 9999655 6677888999999983
No 251
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.96 E-value=0.34 Score=40.96 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------------CCceEEEecC-----CCCCCCCCceeeEe
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------------LNERVTSCDM-----TRTPLKPYSVDVAV 172 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------------~~~~~~~~d~-----~~lp~~~~sfD~Vi 172 (196)
..++||||||...+-..| .+++++|.|+++ ..|.++...- ..+..+.+.||+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 468999999998664444 588999999998 2355554421 11223456899999
Q ss_pred eccccccc
Q psy10644 173 FCLSLMGT 180 (196)
Q Consensus 173 ~~~~lh~~ 180 (196)
|.--+|..
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98777643
No 252
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.54 E-value=0.12 Score=45.08 Aligned_cols=18 Identities=28% Similarity=0.155 Sum_probs=16.8
Q ss_pred CCCCceeeEeeccccccc
Q psy10644 163 LKPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 163 ~~~~sfD~Vi~~~~lh~~ 180 (196)
||.++.++++++.+|||.
T Consensus 158 fP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWL 175 (386)
T ss_pred cCCCceEEEEeeccceec
Confidence 789999999999999986
No 253
>KOG2920|consensus
Probab=93.42 E-value=0.17 Score=42.16 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA 148 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~ 148 (196)
.+.+|||+|||.|.-.... .+ ..|+..|.+.
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na 149 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA 149 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecch
Confidence 4789999999999776655 33 5777778777
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.14 E-value=0.024 Score=39.76 Aligned_cols=73 Identities=15% Similarity=0.015 Sum_probs=30.5
Q ss_pred EEEcCCCchhHhhcc-----C--CeEEEEeCCC---------------CCceEEEecCCCC--CCCCCceeeEeeccccc
Q psy10644 123 ADLGCGEAKLAAELT-----Q--HKVHSLDLVA---------------LNERVTSCDMTRT--PLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 123 LDlGCG~G~~a~~l~-----~--~~v~giDls~---------------~~~~~~~~d~~~l--p~~~~sfD~Vi~~~~lh 178 (196)
||||+..|..+..+. . .+++++|..+ .++.++.++.... .++.+++|+|+.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999998877661 1 2799999887 2456666665332 12356888866543 34
Q ss_pred -ccCHHHHHHHHHHhccCC
Q psy10644 179 -GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 -~~d~~~~l~e~~rvLkpg 196 (196)
.......+..+.+.|+||
T Consensus 80 ~~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPG 98 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEE
T ss_pred CHHHHHHHHHHHHHHcCCC
Confidence 335566777777777775
No 255
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.10 E-value=0.52 Score=40.74 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=53.8
Q ss_pred cCCCCCEEEEEcCCCchhHhhc----c--CCeEEEEeCCC---------------CCceEEEecCCCCC---CCCCceee
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL----T--QHKVHSLDLVA---------------LNERVTSCDMTRTP---LKPYSVDV 170 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l----~--~~~v~giDls~---------------~~~~~~~~d~~~lp---~~~~sfD~ 170 (196)
.+.++.+|||+.++.|.=+-.+ . +..|+++|.++ .++.++..|...++ ...+.||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 4566899999999988543333 3 35679999999 35567777765443 22235999
Q ss_pred Eeec---c---ccc-ccC----------------HHHHHHHHHHhccCC
Q psy10644 171 AVFC---L---SLM-GTD----------------LAACIKEANRILKLG 196 (196)
Q Consensus 171 Vi~~---~---~lh-~~d----------------~~~~l~e~~rvLkpg 196 (196)
|+.- . +++ .++ ..++|..+.++||||
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9852 1 221 111 345788899999987
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.02 E-value=0.21 Score=40.26 Aligned_cols=56 Identities=25% Similarity=0.174 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC----------------CCceEEEecCCCCCCC-CCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA----------------LNERVTSCDMTRTPLK-PYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~----------------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~ 175 (196)
+..++||||-.|.+..+| ....+++.|+++ ..+.+..+|... ++. ++.+|+|+.+.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIAG 93 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIAG 93 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccCCcCEEEEeC
Confidence 445999999999999999 234899999998 244555555532 333 44789887654
No 257
>KOG1099|consensus
Probab=92.94 E-value=0.16 Score=41.35 Aligned_cols=77 Identities=23% Similarity=0.223 Sum_probs=55.3
Q ss_pred CEEEEEcCCCchhHhhc-----c--C---C---eEEEEeCCC----CCceEEEecCCCCC--------CCCCceeeEeec
Q psy10644 120 LVIADLGCGEAKLAAEL-----T--Q---H---KVHSLDLVA----LNERVTSCDMTRTP--------LKPYSVDVAVFC 174 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l-----~--~---~---~v~giDls~----~~~~~~~~d~~~lp--------~~~~sfD~Vi~~ 174 (196)
.+++|+-+-.|.|++.| . . . .|+++|+-+ +.+.-+++|+.... |..+..|+|+|-
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcD 122 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCD 122 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence 47899999999998877 1 1 1 499999988 56777888886532 456789999986
Q ss_pred cc-----ccccC-------HHHHHHHHHHhccCC
Q psy10644 175 LS-----LMGTD-------LAACIKEANRILKLG 196 (196)
Q Consensus 175 ~~-----lh~~d-------~~~~l~e~~rvLkpg 196 (196)
.+ +|..| ...+|.-...+||||
T Consensus 123 GAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 123 GAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred CCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 54 45432 234566677888887
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.93 E-value=0.25 Score=41.87 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC---
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--- 162 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--- 162 (196)
.+.+++.| .+.++..++|.=||.|..+..+ .+.+|+|+|.++ .++.++.++..++.
T Consensus 9 l~Evl~~L---~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 9 LDEVVEGL---NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred HHHHHHhc---CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 34455555 3445779999999999988877 247999999998 25677777765432
Q ss_pred --CCCCceeeEeecccc
Q psy10644 163 --LKPYSVDVAVFCLSL 177 (196)
Q Consensus 163 --~~~~sfD~Vi~~~~l 177 (196)
....++|.|++-+.+
T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305)
T ss_pred HhcCCCcccEEEEeccC
Confidence 234679999987766
No 259
>KOG4058|consensus
Probab=92.79 E-value=0.23 Score=37.84 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=42.4
Q ss_pred cCCCCCEEEEEcCCCchhHhhcc--C-CeEEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecc
Q psy10644 115 ESKGRLVIADLGCGEAKLAAELT--Q-HKVHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l~--~-~~v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
..++..+.+|+|.|.|.+..... + ..-+|+++++ ....|..-|+-.+.+.+-.+-+|+-..
T Consensus 69 ~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgae 148 (199)
T KOG4058|consen 69 RGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAE 148 (199)
T ss_pred cCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehH
Confidence 33446799999999998855552 2 3678999998 345666777766666655554444444
Q ss_pred ccc
Q psy10644 176 SLM 178 (196)
Q Consensus 176 ~lh 178 (196)
+++
T Consensus 149 s~m 151 (199)
T KOG4058|consen 149 SVM 151 (199)
T ss_pred HHH
Confidence 443
No 260
>PTZ00357 methyltransferase; Provisional
Probab=92.54 E-value=0.53 Score=44.15 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=74.4
Q ss_pred hHHHHHHhhhCHHHHHHHHHHHHhhhhcCCCChH--------HHHH-H--HHHhhcC----CCCCEEEEEcCCCchhHhh
Q psy10644 71 SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPV--------DIII-K--SIQERES----KGRLVIADLGCGEAKLAAE 135 (196)
Q Consensus 71 ~~~~~~~~~~~~~~f~~y~~~y~~~~~~w~~~~~--------~~~~-~--~l~~~~~----~~~~~ILDlGCG~G~~a~~ 135 (196)
...-.+-|.+++..|+.|+..-...+..|..... ..+. . .+...+. .....|+=+|+|-|-+...
T Consensus 638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence 4445666778888888888777666655522100 0000 0 0111110 1124689999999977433
Q ss_pred c--------cCCeEEEEeCCC----------------CC--------ceEEEecCCCCCCCC-----------CceeeEe
Q psy10644 136 L--------TQHKVHSLDLVA----------------LN--------ERVTSCDMTRTPLKP-----------YSVDVAV 172 (196)
Q Consensus 136 l--------~~~~v~giDls~----------------~~--------~~~~~~d~~~lp~~~-----------~sfD~Vi 172 (196)
. ...+|++++=++ .+ ++++..|+..+..+. +.+|+||
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIV 797 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceeh
Confidence 3 134899999875 12 688999998874332 3799988
Q ss_pred ecccc-ccc--CHHHHHHHHHHhccC
Q psy10644 173 FCLSL-MGT--DLAACIKEANRILKL 195 (196)
Q Consensus 173 ~~~~l-h~~--d~~~~l~e~~rvLkp 195 (196)
+-+-= .+. =-+++|.-+.+.||+
T Consensus 798 SELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 798 SELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred HhhhcccccccCCHHHHHHHHHhhhh
Confidence 74422 333 246788888888874
No 261
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=92.40 E-value=0.15 Score=41.58 Aligned_cols=58 Identities=21% Similarity=0.103 Sum_probs=36.7
Q ss_pred CEEEEEcCCCchhHhhc--cCCeEEEEeCCC------------------------CCceEEEecCCC-CCCCCCceeeEe
Q psy10644 120 LVIADLGCGEAKLAAEL--TQHKVHSLDLVA------------------------LNERVTSCDMTR-TPLKPYSVDVAV 172 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l--~~~~v~giDls~------------------------~~~~~~~~d~~~-lp~~~~sfD~Vi 172 (196)
.+|||.=||-|.-+..+ .|++|++++-|| .++.++.+|..+ ++.++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 48999999999877766 688999999999 267788888755 566788999999
Q ss_pred ecccc
Q psy10644 173 FCLSL 177 (196)
Q Consensus 173 ~~~~l 177 (196)
+--++
T Consensus 157 ~DPMF 161 (234)
T PF04445_consen 157 FDPMF 161 (234)
T ss_dssp E--S-
T ss_pred ECCCC
Confidence 76555
No 262
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.09 E-value=0.44 Score=37.53 Aligned_cols=78 Identities=22% Similarity=0.152 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCC-CCCC--CceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRT-PLKP--YSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~l-p~~~--~sfD~Vi~~~~ 176 (196)
+.++||+=+|+|.++... . ...++.+|.+. .+..++..|.... +-.. +.||+|+.---
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC
Confidence 789999999999997776 2 34999999998 3556666776532 2122 25999998766
Q ss_pred cc-cc-CHHHHHHH--HHHhccCC
Q psy10644 177 LM-GT-DLAACIKE--ANRILKLG 196 (196)
Q Consensus 177 lh-~~-d~~~~l~e--~~rvLkpg 196 (196)
++ .. +....+.. -..+|+|+
T Consensus 124 y~~~l~~~~~~~~~~~~~~~L~~~ 147 (187)
T COG0742 124 YAKGLLDKELALLLLEENGWLKPG 147 (187)
T ss_pred CccchhhHHHHHHHHHhcCCcCCC
Confidence 65 22 44444444 44567664
No 263
>PRK10742 putative methyltransferase; Provisional
Probab=91.88 E-value=0.39 Score=39.51 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=26.1
Q ss_pred EEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 121 VIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
+|||+=+|.|..+..+ .+++|+++|-++
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p 120 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNP 120 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCH
Confidence 8999999999998888 688999999998
No 264
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.84 E-value=0.68 Score=34.11 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCc-hhHhhc--cCCeEEEEeCCCC----CceEEEecCCCCCCC-CCceeeEeeccccc
Q psy10644 107 IIKSIQERESKGRLVIADLGCGEA-KLAAEL--TQHKVHSLDLVAL----NERVTSCDMTRTPLK-PYSVDVAVFCLSLM 178 (196)
Q Consensus 107 ~~~~l~~~~~~~~~~ILDlGCG~G-~~a~~l--~~~~v~giDls~~----~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh 178 (196)
+.+++.++.. ..+|+|||-|.- ..|..| .+..|+++|+.+. ++.++..|+.+-.+. -...|+|.+.--
T Consensus 4 ~a~~ia~~~~--~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-- 79 (127)
T PF03686_consen 4 FAEYIARLNN--YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYSIRP-- 79 (127)
T ss_dssp HHHHHHHHS---SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEEES---
T ss_pred HHHHHHHhCC--CCcEEEECcCCCHHHHHHHHHcCCcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEEeCC--
Confidence 4455544333 459999999975 446666 5789999999996 888999998762211 235677665432
Q ss_pred ccCHHHHHHHHHH
Q psy10644 179 GTDLAACIKEANR 191 (196)
Q Consensus 179 ~~d~~~~l~e~~r 191 (196)
..+....+.++.+
T Consensus 80 P~El~~~il~lA~ 92 (127)
T PF03686_consen 80 PPELQPPILELAK 92 (127)
T ss_dssp -TTSHHHHHHHHH
T ss_pred ChHHhHHHHHHHH
Confidence 1244555555544
No 265
>KOG2793|consensus
Probab=91.80 E-value=0.67 Score=38.13 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC------------------C--CceEEEecCCC---CCCCCCc-eeeE
Q psy10644 119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA------------------L--NERVTSCDMTR---TPLKPYS-VDVA 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~------------------~--~~~~~~~d~~~---lp~~~~s-fD~V 171 (196)
..+||++|.|+|..+... .+..|.-.|+.. . .+.+...+-.+ ..+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 457999999999654444 456788888776 1 12222222111 1111122 9999
Q ss_pred eeccccccc-CHHHHHHHHHHhc
Q psy10644 172 VFCLSLMGT-DLAACIKEANRIL 193 (196)
Q Consensus 172 i~~~~lh~~-d~~~~l~e~~rvL 193 (196)
+++.++... .++.++.-++..|
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll 189 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLL 189 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHH
Confidence 999999433 5555555554443
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=91.27 E-value=0.96 Score=36.17 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC--------------CCceEEEecCCCCC----CC--CCceee
Q psy10644 119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA--------------LNERVTSCDMTRTP----LK--PYSVDV 170 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~--------------~~~~~~~~d~~~lp----~~--~~sfD~ 170 (196)
...|+|+|.=.|.-+..+ ..++|+|+|+.- .++.++++|..+.. .. ....+-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 469999999888665443 457999999942 47899999875421 11 112333
Q ss_pred E-eecccccc-cCHHHHHHHHHHhccCC
Q psy10644 171 A-VFCLSLMG-TDLAACIKEANRILKLG 196 (196)
Q Consensus 171 V-i~~~~lh~-~d~~~~l~e~~rvLkpg 196 (196)
+ ++-.+-|. .+..+.|+....++++|
T Consensus 113 vlVilDs~H~~~hvl~eL~~y~plv~~G 140 (206)
T PF04989_consen 113 VLVILDSSHTHEHVLAELEAYAPLVSPG 140 (206)
T ss_dssp EEEEESS----SSHHHHHHHHHHT--TT
T ss_pred eEEEECCCccHHHHHHHHHHhCccCCCC
Confidence 3 33444453 37788888888888876
No 267
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.00 E-value=0.86 Score=39.76 Aligned_cols=37 Identities=11% Similarity=-0.079 Sum_probs=30.2
Q ss_pred EEEEeCCC----------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 141 VHSLDLVA----------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 141 v~giDls~----------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
++|+|+++ .-+.|.+.|+..++-+-+.+|+|||+--.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY 309 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY 309 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCc
Confidence 77999999 35789999998886544789999998654
No 268
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=1.1 Score=35.96 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~ 148 (196)
..++.-|...+.+++.+||=||+-+|.....+ ....|+|++.|+
T Consensus 63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~ 110 (231)
T COG1889 63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSP 110 (231)
T ss_pred HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecc
Confidence 34555555567778999999999999887776 335899999999
No 269
>KOG3115|consensus
Probab=90.32 E-value=0.22 Score=39.85 Aligned_cols=30 Identities=23% Similarity=0.539 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~ 148 (196)
.-.++|||||-|.+...| +..-+.|.+|--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 457899999999987777 445788887643
No 270
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.13 E-value=0.47 Score=41.09 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCchhHhhccC-----CeEEEEeCCC----------CCce-----EEEecC--CCCCCC-CCceeeEeecc
Q psy10644 119 RLVIADLGCGEAKLAAELTQ-----HKVHSLDLVA----------LNER-----VTSCDM--TRTPLK-PYSVDVAVFCL 175 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~~-----~~v~giDls~----------~~~~-----~~~~d~--~~lp~~-~~sfD~Vi~~~ 175 (196)
..+|||+|.|.|.-+-.+.. ..++-++.|+ .++. +...|+ ..++++ ...|++|+...
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 45799999887765544411 2455555665 1221 222222 123333 35677777666
Q ss_pred cc-ccc---CHHHHHHHHHHhccCC
Q psy10644 176 SL-MGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~l-h~~---d~~~~l~e~~rvLkpg 196 (196)
-| |.. .....|+.+..++.||
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCC
Confidence 65 422 3445788888888776
No 271
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=88.41 E-value=1.2 Score=38.85 Aligned_cols=78 Identities=18% Similarity=0.062 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCchhHhhc---c-CCeEEEEeCCC----------------------CCceEEEecCCCC-CCCCCceeeE
Q psy10644 119 RLVIADLGCGEAKLAAEL---T-QHKVHSLDLVA----------------------LNERVTSCDMTRT-PLKPYSVDVA 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~-~~~v~giDls~----------------------~~~~~~~~d~~~l-p~~~~sfD~V 171 (196)
-.++|=+|.|.|..++.+ + -.+|+-+|++| +++.++..|..++ .-..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 468999999999999999 3 23899999998 3566666676442 3345689998
Q ss_pred eecccc------cccCHHHHHHHHHHhccCC
Q psy10644 172 VFCLSL------MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~l------h~~d~~~~l~e~~rvLkpg 196 (196)
|.-+-= --.--.++..-+.|.|+++
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~ 400 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAET 400 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence 864321 1113456666666766653
No 272
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.46 E-value=0.9 Score=37.76 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=39.3
Q ss_pred EEEEEcCCCchhHhhc--cCC-eEEEEeCCCC---------CceEEEecCCCCCCC--CCceeeEeecc
Q psy10644 121 VIADLGCGEAKLAAEL--TQH-KVHSLDLVAL---------NERVTSCDMTRTPLK--PYSVDVAVFCL 175 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l--~~~-~v~giDls~~---------~~~~~~~d~~~lp~~--~~sfD~Vi~~~ 175 (196)
+++|+-||.|.+..-+ .+. .|.++|+++. ...++.+|+..+... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999997666 445 5678999981 223567788776432 35699998754
No 273
>KOG2651|consensus
Probab=87.11 E-value=1.2 Score=39.05 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCchhHhhc---cCCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL---TQHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~~~~v~giDls~ 148 (196)
-..++|+|.|-|.+++.| .+..|.+||-|.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 568999999999999999 466999999997
No 274
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.04 E-value=1.4 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchhHhhc----c--------CCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL----T--------QHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~--------~~~v~giDls~ 148 (196)
..+|+|+|+|+|.++..+ . ..+++-++.|+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 479999999999997776 1 24899999998
No 275
>PHA01634 hypothetical protein
Probab=87.00 E-value=1.9 Score=32.08 Aligned_cols=55 Identities=16% Similarity=-0.007 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCchhHhhc--cC-CeEEEEeCCC-------CCc-eEEEecC----CCCCCCCCceeeEe
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQ-HKVHSLDLVA-------LNE-RVTSCDM----TRTPLKPYSVDVAV 172 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~-~~v~giDls~-------~~~-~~~~~d~----~~lp~~~~sfD~Vi 172 (196)
.+.+|+|||.+-|..+..+ .+ ..|++++.++ .++ .+.++|- .+++-.-+.||+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEE
Confidence 3679999999999998888 34 4899999998 122 1233331 23444556788754
No 276
>KOG1098|consensus
Probab=86.30 E-value=0.49 Score=43.67 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC----CCceEEEecCC
Q psy10644 118 GRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA----LNERVTSCDMT 159 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~----~~~~~~~~d~~ 159 (196)
+...||||||-.|.|.+.. .+.-|+|+|+.| +++...+.|+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIt 94 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDIT 94 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhh
Confidence 4678999999999996555 466899999999 56666666664
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=85.23 E-value=1.3 Score=34.60 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
...+...|. ....++..|||.=||+|..+... .+.+.+|+|+++
T Consensus 178 ~~l~~~lI~-~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 178 VELIERLIK-ASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHH-HHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHHH-hhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 333333343 33345889999999999886666 688999999986
No 278
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=84.54 E-value=0.78 Score=38.36 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=41.6
Q ss_pred cCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC---------------CCceEEEecCCCC-C-CCCCceeeEe
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA---------------LNERVTSCDMTRT-P-LKPYSVDVAV 172 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~---------------~~~~~~~~d~~~l-p-~~~~sfD~Vi 172 (196)
.+.++..|||+.+|.|.=+..+ ....|++.|+++ .++.+...|.... + .....||.|+
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 4556889999999999665444 256999999998 3555665665443 1 2334699998
Q ss_pred e
Q psy10644 173 F 173 (196)
Q Consensus 173 ~ 173 (196)
.
T Consensus 162 v 162 (283)
T PF01189_consen 162 V 162 (283)
T ss_dssp E
T ss_pred c
Confidence 5
No 279
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.38 E-value=5.4 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.+++..+|+|+-.|.++-.| .+-.|+++|.-+
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ 243 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP 243 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccch
Confidence 35899999999999999998 456999999877
No 280
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.57 E-value=7.7 Score=28.25 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCc-hhHhhc--cCCeEEEEeCCC----CCceEEEecCCCCCCC-CCceeeEeeccccccc-CHHHHHHHH
Q psy10644 119 RLVIADLGCGEA-KLAAEL--TQHKVHSLDLVA----LNERVTSCDMTRTPLK-PYSVDVAVFCLSLMGT-DLAACIKEA 189 (196)
Q Consensus 119 ~~~ILDlGCG~G-~~a~~l--~~~~v~giDls~----~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh~~-d~~~~l~e~ 189 (196)
..+|+++|-|-= ..+..| .++.|+++|+.+ ..+++.+.|+.+-.+. ....|+|.+ +-.+ +....+-.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYS---iRpppEl~~~ildv 90 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYS---IRPPPELQSAILDV 90 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccccCcccceEEEccCCCccHHHhhCccceee---cCCCHHHHHHHHHH
Confidence 458999998864 336666 568999999998 4567899998763221 133455544 3222 445555555
Q ss_pred HHhc
Q psy10644 190 NRIL 193 (196)
Q Consensus 190 ~rvL 193 (196)
.+.+
T Consensus 91 a~aV 94 (129)
T COG1255 91 AKAV 94 (129)
T ss_pred HHhh
Confidence 5443
No 281
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=81.52 E-value=3.9 Score=34.79 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------------CCceEEEecCCCCC---
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------------LNERVTSCDMTRTP--- 162 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------------~~~~~~~~d~~~lp--- 162 (196)
.+.+++.|. +.++..++|.=.|.|..+..+ ++.+|+|+|.++ .++.++.++..++.
T Consensus 9 l~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 9 LKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp HHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHH
T ss_pred HHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHH
Confidence 455666663 455779999988999887777 458999999998 35667777665442
Q ss_pred --C-CCCceeeEeecccc
Q psy10644 163 --L-KPYSVDVAVFCLSL 177 (196)
Q Consensus 163 --~-~~~sfD~Vi~~~~l 177 (196)
. ....+|.|++-+.+
T Consensus 86 ~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHTTTTS-EEEEEEE-S-
T ss_pred HHccCCCccCEEEEcccc
Confidence 2 34589999876655
No 282
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.44 E-value=3.2 Score=35.99 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCchhHhhc------------cCCeEEEEeCCC
Q psy10644 107 IIKSIQERESKGRLVIADLGCGEAKLAAEL------------TQHKVHSLDLVA 148 (196)
Q Consensus 107 ~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l------------~~~~v~giDls~ 148 (196)
+++.+..........|++||.|+|.++..+ ...++.-++.|+
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 344444444444678999999999997776 245899999998
No 283
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.66 E-value=7.4 Score=33.53 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=38.0
Q ss_pred HHhhcCCCCCEEEEEcCCCch--hHhhc---cCCeEEEEeCCCC---------CceEEEec-CCCCCCCCCceeeEeecc
Q psy10644 111 IQERESKGRLVIADLGCGEAK--LAAEL---TQHKVHSLDLVAL---------NERVTSCD-MTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 111 l~~~~~~~~~~ILDlGCG~G~--~a~~l---~~~~v~giDls~~---------~~~~~~~d-~~~lp~~~~sfD~Vi~~~ 175 (196)
|+....+++..|+=+|+| |. .+..+ .+.+|+++|.++. ...++... ....+--.+.||+|+..-
T Consensus 159 lk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 159 LKKANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred hhhcCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 333344568899999988 63 33333 4689999999992 22333322 111111112389988776
Q ss_pred c
Q psy10644 176 S 176 (196)
Q Consensus 176 ~ 176 (196)
.
T Consensus 238 ~ 238 (339)
T COG1064 238 G 238 (339)
T ss_pred C
Confidence 6
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.20 E-value=6.3 Score=32.40 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC-----------C------CceEEEe-cCC----CCCCCCCceee
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA-----------L------NERVTSC-DMT----RTPLKPYSVDV 170 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~-----------~------~~~~~~~-d~~----~lp~~~~sfD~ 170 (196)
+++.++||||.|.--+-..+ -+++.+|.|+++ . .+++... |-. .+--.++.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 35678999999876554444 467899999988 1 1222211 211 12223678999
Q ss_pred Eeeccccccc
Q psy10644 171 AVFCLSLMGT 180 (196)
Q Consensus 171 Vi~~~~lh~~ 180 (196)
++|+--+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999888743
No 285
>KOG1501|consensus
Probab=80.07 E-value=3.1 Score=37.25 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchhHhhc--c-CCeEEEEeCCC----------------CCceEEEecCCCCCCC-CCceeeEeeccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL--T-QHKVHSLDLVA----------------LNERVTSCDMTRTPLK-PYSVDVAVFCLSLM 178 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~-~~~v~giDls~----------------~~~~~~~~d~~~lp~~-~~sfD~Vi~~~~lh 178 (196)
...+||||.|||.++... . +-.|++++.-. .++.++.-.-.++... ....|+++.-...-
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 346899999999997665 2 33789987544 3555554443333322 23356655544431
Q ss_pred ---ccCHHHHHHHHHHhc
Q psy10644 179 ---GTDLAACIKEANRIL 193 (196)
Q Consensus 179 ---~~d~~~~l~e~~rvL 193 (196)
+......++++++.|
T Consensus 147 EligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhccccchhHHHHHHHh
Confidence 223445566666644
No 286
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=79.90 E-value=3 Score=31.29 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=35.5
Q ss_pred eEEEEeCCC----------------CCceEEEecCCCCC--CCCCceeeEeeccccc-cc------C---HHHHHHHHHH
Q psy10644 140 KVHSLDLVA----------------LNERVTSCDMTRTP--LKPYSVDVAVFCLSLM-GT------D---LAACIKEANR 191 (196)
Q Consensus 140 ~v~giDls~----------------~~~~~~~~d~~~lp--~~~~sfD~Vi~~~~lh-~~------d---~~~~l~e~~r 191 (196)
+|+|+|+-+ .++.++...=+++. ++++.+|+|++++... +- . -..+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999987 25677766555543 3346899999999872 11 2 3467888888
Q ss_pred hccCC
Q psy10644 192 ILKLG 196 (196)
Q Consensus 192 vLkpg 196 (196)
+|+||
T Consensus 81 lL~~g 85 (140)
T PF06962_consen 81 LLKPG 85 (140)
T ss_dssp HEEEE
T ss_pred hhccC
Confidence 88875
No 287
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=79.47 E-value=12 Score=30.75 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCc-hhHhhc--cCCeEEEEeCCC--------------CCceEEEecCCCCCCC---CCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEA-KLAAEL--TQHKVHSLDLVA--------------LNERVTSCDMTRTPLK---PYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G-~~a~~l--~~~~v~giDls~--------------~~~~~~~~d~~~lp~~---~~sfD~Vi~~~~l 177 (196)
.+.+||=||=+.- .++..+ .+.+|+.+|+.+ .+++....|+.+ |+| -++||+++.--..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeCCCC
Confidence 4778999995554 223333 566999999998 357788888855 444 3789998764332
Q ss_pred cccCHHHHHHHHHHhcc
Q psy10644 178 MGTDLAACIKEANRILK 194 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLk 194 (196)
-......|+......||
T Consensus 123 T~~G~~LFlsRgi~~Lk 139 (243)
T PF01861_consen 123 TPEGLKLFLSRGIEALK 139 (243)
T ss_dssp SHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 22234556666666665
No 288
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=78.09 E-value=5.4 Score=33.05 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCchhHhhc---c------CCeEEEEeCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAEL---T------QHKVHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l---~------~~~v~giDls~ 148 (196)
.+...++|+|||.|.++..+ . ...++-||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34678999999999998888 1 24788888765
No 289
>PRK11524 putative methyltransferase; Provisional
Probab=74.60 E-value=6.7 Score=32.65 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 106 IIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 106 ~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.+++.+-.....++..|||-=||+|..+... .+.+.+|+|+++
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~ 240 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS 240 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH
Confidence 3344433333456899999999998775554 688999999999
No 290
>PRK13699 putative methylase; Provisional
Probab=74.35 E-value=6.8 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 103 PVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
|+..+...|.. ...++..|||-=||+|..+... .+.+++|+|+++
T Consensus 149 P~~l~~~~i~~-~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~ 195 (227)
T PRK13699 149 PVTSLQPLIES-FTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE 195 (227)
T ss_pred cHHHHHHHHHH-hCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH
Confidence 44444444433 2345889999999999876665 688999999998
No 291
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=73.57 E-value=10 Score=28.86 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCchhHhhc----cCCeEEEEeCCC--------CCceEEEecCCC-CCC---CCCceeeEeeccccccc
Q psy10644 119 RLVIADLGCGEAKLAAEL----TQHKVHSLDLVA--------LNERVTSCDMTR-TPL---KPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~~~~v~giDls~--------~~~~~~~~d~~~-lp~---~~~sfD~Vi~~~~lh~~ 180 (196)
..-|||+|=|.|..--.| ++.+|+.+|-.- +...++.+|+.+ +|. .....-+|++-...|..
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~ 106 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDK 106 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-H
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCc
Confidence 467999999999886555 788999999643 456788888754 332 23334444444444433
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=70.72 E-value=18 Score=33.00 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchhHh-hc---cCCeEEEEeCCC--------CCceEEEecCCC-----------CC----------CC
Q psy10644 118 GRLVIADLGCGEAKLAA-EL---TQHKVHSLDLVA--------LNERVTSCDMTR-----------TP----------LK 164 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~-~l---~~~~v~giDls~--------~~~~~~~~d~~~-----------lp----------~~ 164 (196)
++.+|+=+|||.-.+.. .. .+..|+++|.++ ....+...|..+ +. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 47899999999765422 22 467999999998 234433332211 00 01
Q ss_pred C--CceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644 165 P--YSVDVAVFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 165 ~--~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
+ ..+|+||.+...-.. .+..+.+++.+.+|||
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG 278 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG 278 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC
Confidence 1 358999888776443 4434458899998886
No 293
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=70.26 E-value=23 Score=35.71 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCEEEEEcCCC-chhHhhc-cCCeEEEEeCCC---------CCceEEEecCCCCC-CCCCceeeEeecccc-c-----cc
Q psy10644 119 RLVIADLGCGE-AKLAAEL-TQHKVHSLDLVA---------LNERVTSCDMTRTP-LKPYSVDVAVFCLSL-M-----GT 180 (196)
Q Consensus 119 ~~~ILDlGCG~-G~~a~~l-~~~~v~giDls~---------~~~~~~~~d~~~lp-~~~~sfD~Vi~~~~l-h-----~~ 180 (196)
...+||+|.|. .+....+ ....|+.+|.-| ..-.+++.|-..-. .....+|.|.|.++| - ..
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a~~ 902 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASANV 902 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHCT-
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcCCC
Confidence 56899999884 3555555 455899999988 23467888864432 345679999999988 2 33
Q ss_pred CHHHHHHHHHHhccC
Q psy10644 181 DLAACIKEANRILKL 195 (196)
Q Consensus 181 d~~~~l~e~~rvLkp 195 (196)
+....++.+.+.+++
T Consensus 903 tl~~~l~~~l~~~~~ 917 (1289)
T PF06016_consen 903 TLDAGLQQFLSQCVQ 917 (1289)
T ss_dssp -HHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHh
Confidence 788888888887764
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=70.20 E-value=16 Score=31.51 Aligned_cols=80 Identities=23% Similarity=0.266 Sum_probs=47.2
Q ss_pred CCCCEEEEEcCCC-chhHhhc---cCC-eEEEEeCCCC---------CceEEEecCCC-C-----CC-CCCceeeEeecc
Q psy10644 117 KGRLVIADLGCGE-AKLAAEL---TQH-KVHSLDLVAL---------NERVTSCDMTR-T-----PL-KPYSVDVAVFCL 175 (196)
Q Consensus 117 ~~~~~ILDlGCG~-G~~a~~l---~~~-~v~giDls~~---------~~~~~~~d~~~-l-----p~-~~~sfD~Vi~~~ 175 (196)
.++.+||.+|||. |.++..+ .+. +|+++|.++. ...++...-.. + .+ ....+|+|+-+-
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 3477899999987 6665555 354 5999988762 22222111110 1 11 223689888764
Q ss_pred cc---------------cc-cCHHHHHHHHHHhccCC
Q psy10644 176 SL---------------MG-TDLAACIKEANRILKLG 196 (196)
Q Consensus 176 ~l---------------h~-~d~~~~l~e~~rvLkpg 196 (196)
.- +- .+....+.++.++|+++
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG 299 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccC
Confidence 21 11 24567889999998875
No 295
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=69.95 E-value=32 Score=28.69 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCchhHhhc----c----CCeEEEEeCCC--------------C--CceEEEecCCC-CC-CCCCceeeE-
Q psy10644 119 RLVIADLGCGEAKLAAEL----T----QHKVHSLDLVA--------------L--NERVTSCDMTR-TP-LKPYSVDVA- 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l----~----~~~v~giDls~--------------~--~~~~~~~d~~~-lp-~~~~sfD~V- 171 (196)
..+.+|+|.|+..=++.| . ..+.+.+|+|. + .+.-+++|.+. +. ++...--++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 679999999999777776 2 24889999998 2 23344555421 11 223333333
Q ss_pred eecccc-ccc--CHHHHHHHHHHhccCC
Q psy10644 172 VFCLSL-MGT--DLAACIKEANRILKLG 196 (196)
Q Consensus 172 i~~~~l-h~~--d~~~~l~e~~rvLkpg 196 (196)
+...+| ..+ +-..+|.+++..|+||
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pG 186 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPG 186 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCc
Confidence 333444 333 5567899999999997
No 296
>KOG3924|consensus
Probab=69.64 E-value=7.1 Score=34.30 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc---cCC-eEEEEeCCC------------------------CCceEEE
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL---TQH-KVHSLDLVA------------------------LNERVTS 155 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l---~~~-~v~giDls~------------------------~~~~~~~ 155 (196)
...+.....++..+++..-.|+|.|-|...... .++ .=+|+.+.. ..+..+.
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~ 257 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH 257 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecc
Confidence 444555555666667889999999999987776 222 556777665 1233333
Q ss_pred ecCCCC---CCCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 156 CDMTRT---PLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 156 ~d~~~l---p~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
++...- ..-....++|++..+....+...-+.++..-|++|
T Consensus 258 gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~g 301 (419)
T KOG3924|consen 258 GSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDG 301 (419)
T ss_pred cccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCc
Confidence 333211 01124567887777776665555556777777765
No 297
>KOG1596|consensus
Probab=68.32 E-value=17 Score=30.07 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=28.1
Q ss_pred hhcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC
Q psy10644 113 ERESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA 148 (196)
Q Consensus 113 ~~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~ 148 (196)
....+++.+||=||++.|...... +..-|++++.|+
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 344566899999999999876655 344799999988
No 298
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=67.20 E-value=16 Score=26.40 Aligned_cols=29 Identities=17% Similarity=0.565 Sum_probs=26.0
Q ss_pred CChHHHHHHhhhCHHHHHHHHHHHHhhhh
Q psy10644 69 SKSEESKDFFTEDRESFEAYHEGFKKQVT 97 (196)
Q Consensus 69 ~~~~~~~~~~~~~~~~f~~y~~~y~~~~~ 97 (196)
.+|.+..++|..+|..|+.+...|+..+.
T Consensus 46 APS~eLRkwf~Hdp~~w~~F~~rY~~EL~ 74 (117)
T COG3189 46 APSTELRKWFHHDPKKWDEFRERYRAELN 74 (117)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999988774
No 299
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.13 E-value=29 Score=28.61 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCC-chhHhhc---cCCeEEEEeCCCC--------CceEEEecCCCC------CCCCCceeeEeeccccc
Q psy10644 117 KGRLVIADLGCGE-AKLAAEL---TQHKVHSLDLVAL--------NERVTSCDMTRT------PLKPYSVDVAVFCLSLM 178 (196)
Q Consensus 117 ~~~~~ILDlGCG~-G~~a~~l---~~~~v~giDls~~--------~~~~~~~d~~~l------p~~~~sfD~Vi~~~~lh 178 (196)
..+.+||..|||. |..+..+ .+.+|++++.++. .+..+....... ......+|+|+.+...
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~- 242 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT- 242 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC-
Confidence 3467888888763 5554444 4678999988762 122222111111 1234568988765421
Q ss_pred ccCHHHHHHHHHHhccCC
Q psy10644 179 GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLkpg 196 (196)
...+.++.+.|+++
T Consensus 243 ----~~~~~~~~~~l~~~ 256 (338)
T cd08254 243 ----QPTFEDAQKAVKPG 256 (338)
T ss_pred ----HHHHHHHHHHhhcC
Confidence 34566677777654
No 300
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=65.45 E-value=21 Score=30.39 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=46.0
Q ss_pred hcCCCCCEEEEEcCCCchhHhhc-----cCCeEEEEeCCC--------------CCceEEEecCCCCC-----CCCCcee
Q psy10644 114 RESKGRLVIADLGCGEAKLAAEL-----TQHKVHSLDLVA--------------LNERVTSCDMTRTP-----LKPYSVD 169 (196)
Q Consensus 114 ~~~~~~~~ILDlGCG~G~~a~~l-----~~~~v~giDls~--------------~~~~~~~~d~~~lp-----~~~~sfD 169 (196)
+.+.++...+|.=-|.|..++.+ ...+++|+|-.+ .++.++..+..++. ...+.+|
T Consensus 19 L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 19 LAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred cccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 35556789999999999998888 235799999998 35677777654432 2346788
Q ss_pred eEeecccc
Q psy10644 170 VAVFCLSL 177 (196)
Q Consensus 170 ~Vi~~~~l 177 (196)
.|++-+..
T Consensus 99 GiL~DLGV 106 (314)
T COG0275 99 GILLDLGV 106 (314)
T ss_pred EEEEeccC
Confidence 88775544
No 301
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=64.45 E-value=2.5 Score=29.58 Aligned_cols=11 Identities=36% Similarity=0.930 Sum_probs=9.4
Q ss_pred EEEcCCCchhH
Q psy10644 123 ADLGCGEAKLA 133 (196)
Q Consensus 123 LDlGCG~G~~a 133 (196)
+|||||.|...
T Consensus 7 IDIGcG~GNTm 17 (124)
T PF07101_consen 7 IDIGCGAGNTM 17 (124)
T ss_pred cccccCCCcch
Confidence 79999999763
No 302
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=61.33 E-value=14 Score=32.46 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=26.9
Q ss_pred cCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 115 ESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
...++.+||=|..|..+....+ .+.+|++||++|
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp 67 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNP 67 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCH
Confidence 4455889999987776666666 457999999999
No 303
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=60.80 E-value=7.7 Score=33.04 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=31.7
Q ss_pred CceEEEecCCCCCCCC-------CceeeEeeccccc--cc----CHHHHHHHHHHhccCC
Q psy10644 150 NERVTSCDMTRTPLKP-------YSVDVAVFCLSLM--GT----DLAACIKEANRILKLG 196 (196)
Q Consensus 150 ~~~~~~~d~~~lp~~~-------~sfD~Vi~~~~lh--~~----d~~~~l~e~~rvLkpg 196 (196)
++.|.+.|+..+.-++ ...|+|...+.++ +. .-.++|..+..+++||
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~G 235 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPG 235 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCC
Confidence 4567777876554321 2568888888874 22 4567888888888887
No 304
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=60.31 E-value=38 Score=27.14 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCC----------CCceEEEecCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVA----------LNERVTSCDMTR 160 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~----------~~~~~~~~d~~~ 160 (196)
...|+++|.-.|..+..+ ...+|.++|++- +.+.+++++-.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~d 129 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTD 129 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCC
Confidence 468999999888776665 236999999875 467788877543
No 305
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=59.37 E-value=24 Score=30.69 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCc-hhH---hhc---c----CCeEEEEeC
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEA-KLA---AEL---T----QHKVHSLDL 146 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G-~~a---~~l---~----~~~v~giDl 146 (196)
..|++.+.. .+..+|+|+|.|.| +|. +.| + .-+|||++.
T Consensus 100 qaIleA~~g---~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 100 QAILEAFEG---ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HHHHHHhcc---CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 345555533 34678999999998 333 333 1 129999998
No 306
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=56.93 E-value=20 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCchhHhhc----c----CCeEEEEeCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAEL----T----QHKVHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l----~----~~~v~giDls~ 148 (196)
.+..+|.|-.||+|.+.... . ...++|.++.+
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~ 224 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND 224 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH
Confidence 34669999999999774333 1 25789999887
No 307
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=56.91 E-value=28 Score=29.07 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCch--------hHhhc-cCCeEEEEeCCC---CCceEEEecCCCCCCCCCceeeEeeccc
Q psy10644 118 GRLVIADLGCGEAK--------LAAEL-TQHKVHSLDLVA---LNERVTSCDMTRTPLKPYSVDVAVFCLS 176 (196)
Q Consensus 118 ~~~~ILDlGCG~G~--------~a~~l-~~~~v~giDls~---~~~~~~~~d~~~lp~~~~sfD~Vi~~~~ 176 (196)
.+++||.+|+|.-. +-+.| .++-++-.|+.+ .....+.+|...+.. +..+|+|++-.-
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~-~~k~DlIiSDmY 130 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP-PDKFDLIISDMY 130 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE-SS-EEEEEE---
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC-CCcccEEEEecc
Confidence 47999999998542 34445 466888888877 234457778777654 578999988554
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.50 E-value=17 Score=33.98 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=19.4
Q ss_pred CceeeEeecc-cc-cccC--HHHHHHHHHHhccCC
Q psy10644 166 YSVDVAVFCL-SL-MGTD--LAACIKEANRILKLG 196 (196)
Q Consensus 166 ~sfD~Vi~~~-~l-h~~d--~~~~l~e~~rvLkpg 196 (196)
..||+++.-. +- +..+ -+.+|++++|+++||
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPG 199 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCC
Confidence 4578765421 11 2221 267899999999986
No 309
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=55.88 E-value=17 Score=33.08 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchh-Hhhc---cCCeEEEEeCCC--------CCceEEEecCCC-----------------------CC
Q psy10644 118 GRLVIADLGCGEAKL-AAEL---TQHKVHSLDLVA--------LNERVTSCDMTR-----------------------TP 162 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~-a~~l---~~~~v~giDls~--------~~~~~~~~d~~~-----------------------lp 162 (196)
++.++|=+|||.-.. +..+ .+..|+.+|.++ ....++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 357999999997643 2222 467899999988 223333333211 11
Q ss_pred CCCCceeeEeeccccccc-CHHHHHHHHHHhccCC
Q psy10644 163 LKPYSVDVAVFCLSLMGT-DLAACIKEANRILKLG 196 (196)
Q Consensus 163 ~~~~sfD~Vi~~~~lh~~-d~~~~l~e~~rvLkpg 196 (196)
-.-..+|+|+.+-.+.+. .+.-..+++.+.+|||
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 012469999777666554 5556788888888886
No 310
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=51.60 E-value=12 Score=31.04 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=37.8
Q ss_pred EEEEEcCCCchhHhhc--cCC-eEEEEeCCC-------CCc-eEEEecCCCCC---CCCCceeeEeec
Q psy10644 121 VIADLGCGEAKLAAEL--TQH-KVHSLDLVA-------LNE-RVTSCDMTRTP---LKPYSVDVAVFC 174 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l--~~~-~v~giDls~-------~~~-~~~~~d~~~lp---~~~~sfD~Vi~~ 174 (196)
+++|+=||.|.+..-| .+. -|.++|+++ .|. .+..+|+..+. ++. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcccccccccccccccccccc-cceEEEec
Confidence 6899999999887777 454 677899998 111 77888987764 444 59998864
No 311
>KOG2872|consensus
Probab=51.31 E-value=77 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=21.8
Q ss_pred EEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 121 VIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
-++=+.-|.|.....+ .|+.|+|+|-.-
T Consensus 253 Pmi~fakG~g~~Le~l~~tG~DVvgLDWTv 282 (359)
T KOG2872|consen 253 PMILFAKGSGGALEELAQTGYDVVGLDWTV 282 (359)
T ss_pred ceEEEEcCcchHHHHHHhcCCcEEeecccc
Confidence 3556778888888888 688999999654
No 312
>KOG1122|consensus
Probab=50.98 E-value=28 Score=30.99 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=38.2
Q ss_pred cCCCCCEEEEEcCCCchh----Hhhcc-CCeEEEEeCCC---------------CCceEEEecCCCCC---CCCCceeeE
Q psy10644 115 ESKGRLVIADLGCGEAKL----AAELT-QHKVHSLDLVA---------------LNERVTSCDMTRTP---LKPYSVDVA 171 (196)
Q Consensus 115 ~~~~~~~ILDlGCG~G~~----a~~l~-~~~v~giDls~---------------~~~~~~~~d~~~lp---~~~~sfD~V 171 (196)
.++++.+|||+.+-.|.= |..|. ...|++.|.+. .+.-++..|...+| ++. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 457899999999888754 33333 34899999877 23334444554444 444 89999
Q ss_pred ee
Q psy10644 172 VF 173 (196)
Q Consensus 172 i~ 173 (196)
+.
T Consensus 317 LL 318 (460)
T KOG1122|consen 317 LL 318 (460)
T ss_pred ee
Confidence 85
No 313
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=50.74 E-value=53 Score=27.63 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCC-chhHhhc---cCC-eEEEEeCCCC--------CceEEE-e---cCCCCCCCCCceeeEeeccccccc
Q psy10644 118 GRLVIADLGCGE-AKLAAEL---TQH-KVHSLDLVAL--------NERVTS-C---DMTRTPLKPYSVDVAVFCLSLMGT 180 (196)
Q Consensus 118 ~~~~ILDlGCG~-G~~a~~l---~~~-~v~giDls~~--------~~~~~~-~---d~~~lp~~~~sfD~Vi~~~~lh~~ 180 (196)
++.+||=+|||. |.++..+ .+. +|+++|.++. ....+. . ++..+....+.+|+|+-+-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~--- 245 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH--- 245 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC---
Confidence 467888888752 2223222 355 6899998872 111111 1 111111112348888766431
Q ss_pred CHHHHHHHHHHhccCC
Q psy10644 181 DLAACIKEANRILKLG 196 (196)
Q Consensus 181 d~~~~l~e~~rvLkpg 196 (196)
...+..+.++|++|
T Consensus 246 --~~~~~~~~~~l~~~ 259 (343)
T PRK09880 246 --PSSINTCLEVTRAK 259 (343)
T ss_pred --HHHHHHHHHHhhcC
Confidence 24566666777664
No 314
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=50.08 E-value=48 Score=28.06 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCC-------------------CCceEEEecCCCCC-CC--CCceee
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVA-------------------LNERVTSCDMTRTP-LK--PYSVDV 170 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~-------------------~~~~~~~~d~~~lp-~~--~~sfD~ 170 (196)
..+||=.| |+|.++..| .+.+|+++|... .++.++.+|+.+.. +. -..+|+
T Consensus 15 ~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 46788888 778776666 467999998643 13567788886532 10 124788
Q ss_pred Eeecccc
Q psy10644 171 AVFCLSL 177 (196)
Q Consensus 171 Vi~~~~l 177 (196)
|+-+.+.
T Consensus 94 ViHlAa~ 100 (348)
T PRK15181 94 VLHQAAL 100 (348)
T ss_pred EEECccc
Confidence 8877765
No 315
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.59 E-value=26 Score=28.03 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=42.3
Q ss_pred CCCEEEEEcCC-CchhHhhc--cCCeEEEEeCCC-------CCceEEEecCCCCCCCCCceeeEeecccccccCHH
Q psy10644 118 GRLVIADLGCG-EAKLAAEL--TQHKVHSLDLVA-------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLA 183 (196)
Q Consensus 118 ~~~~ILDlGCG-~G~~a~~l--~~~~v~giDls~-------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~ 183 (196)
....||=+|.= +|.+...+ ..++|+.+|+.| +++.|... +-+..+.+|+|+-.-.|-+.+++
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~----~~~~~G~~DlivDlTGlGG~~Pe 115 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNL----LKFIRGEVDLIVDLTGLGGIEPE 115 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhh----cCCCCCceeEEEeccccCCCCHH
Confidence 35678888874 66664444 578999999999 34444322 44567889999987777655543
No 316
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.31 E-value=21 Score=24.85 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=31.3
Q ss_pred CCCchhHhhc-----cCC-eEEEEeCCC--------CCceEEEecCCCCC----CCCCceeeEeecc
Q psy10644 127 CGEAKLAAEL-----TQH-KVHSLDLVA--------LNERVTSCDMTRTP----LKPYSVDVAVFCL 175 (196)
Q Consensus 127 CG~G~~a~~l-----~~~-~v~giDls~--------~~~~~~~~d~~~lp----~~~~sfD~Vi~~~ 175 (196)
||.|.+++.+ .+. .|+.+|.++ ....++.+|..+.. ..-..+|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 5666776666 334 899999998 46788999886532 2234677766653
No 317
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.28 E-value=16 Score=30.99 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=35.7
Q ss_pred EEEEcCCCchhHhhc--cCCeE-EEEeCCC----------CCceEEEecCCCCCCC-CCceeeEeec
Q psy10644 122 IADLGCGEAKLAAEL--TQHKV-HSLDLVA----------LNERVTSCDMTRTPLK-PYSVDVAVFC 174 (196)
Q Consensus 122 ILDlGCG~G~~a~~l--~~~~v-~giDls~----------~~~~~~~~d~~~lp~~-~~sfD~Vi~~ 174 (196)
|+|+=||.|.+..-| .+.++ .++|+.+ +. .++.+|+.++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 589999999988777 56654 5689987 22 4566788765421 1247998764
No 318
>KOG2811|consensus
Probab=46.99 E-value=47 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCEEEEEcCCCchhHhhc
Q psy10644 119 RLVIADLGCGEAKLAAEL 136 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l 136 (196)
+..++++|||-|.+++++
T Consensus 183 ~~~~vEFGAGrg~Ls~~v 200 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWV 200 (420)
T ss_pred cceEEEecCCchHHHHHH
Confidence 368999999999999998
No 319
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=46.73 E-value=1.4e+02 Score=24.51 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCchhHhhcc---CCeEEEEeCCC-----------------CCceEEEecCCC-C-------CCCCCceee
Q psy10644 119 RLVIADLGCGEAKLAAELT---QHKVHSLDLVA-----------------LNERVTSCDMTR-T-------PLKPYSVDV 170 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l~---~~~v~giDls~-----------------~~~~~~~~d~~~-l-------p~~~~sfD~ 170 (196)
...|+.||||-=.-+..+. +..++-+|.-. .+..++.+|+.. + .+..+.--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 3469999999877777772 23555555544 245677777741 1 122223334
Q ss_pred Eeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 171 AVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 171 Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
+++-.++++. +...+|+.+.+...||
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~g 190 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPG 190 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCC
Confidence 5555555554 4566788777665443
No 320
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=45.86 E-value=35 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 118 GRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.+.+|+-+|.|.......+ .+.+|.++|+++
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ 95 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNP 95 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCCceeEEEeCCH
Confidence 3789999999998888787 567999999999
No 321
>PLN00016 RNA-binding protein; Provisional
Probab=44.60 E-value=32 Score=29.55 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=37.6
Q ss_pred CCEEEEE---cCCCchhHhhc------cCCeEEEEeCCCC-------------------CceEEEecCCCCC--CCCCce
Q psy10644 119 RLVIADL---GCGEAKLAAEL------TQHKVHSLDLVAL-------------------NERVTSCDMTRTP--LKPYSV 168 (196)
Q Consensus 119 ~~~ILDl---GCG~G~~a~~l------~~~~v~giDls~~-------------------~~~~~~~d~~~lp--~~~~sf 168 (196)
..+||=+ |.|+|.++..+ .+++|++++-++. ++.++.+|+.++. +....+
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~ 131 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGF 131 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCc
Confidence 4578888 23777666555 5779999986542 3677788875421 233468
Q ss_pred eeEeeccc
Q psy10644 169 DVAVFCLS 176 (196)
Q Consensus 169 D~Vi~~~~ 176 (196)
|+|+.+..
T Consensus 132 d~Vi~~~~ 139 (378)
T PLN00016 132 DVVYDNNG 139 (378)
T ss_pred cEEEeCCC
Confidence 98886643
No 322
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.40 E-value=57 Score=30.24 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchhHhhc-------cCCeEEEEeCCC----------------CCceEEEecCCCC-----CCCCCceee
Q psy10644 119 RLVIADLGCGEAKLAAEL-------TQHKVHSLDLVA----------------LNERVTSCDMTRT-----PLKPYSVDV 170 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l-------~~~~v~giDls~----------------~~~~~~~~d~~~l-----p~~~~sfD~ 170 (196)
+.+||==| |+|.++..+ ...+++-+|.++ ..+.+..+|+.+. .+..-+.|+
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 56777767 667776666 345889999888 2456788888663 255667999
Q ss_pred Eeecccc-ccc----CHHHHHH
Q psy10644 171 AVFCLSL-MGT----DLAACIK 187 (196)
Q Consensus 171 Vi~~~~l-h~~----d~~~~l~ 187 (196)
|+-..++ |.+ ++.++++
T Consensus 329 VfHAAA~KHVPl~E~nP~Eai~ 350 (588)
T COG1086 329 VFHAAALKHVPLVEYNPEEAIK 350 (588)
T ss_pred EEEhhhhccCcchhcCHHHHHH
Confidence 9999999 854 6766654
No 323
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=43.99 E-value=46 Score=28.91 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCC-----CCCC--ce
Q psy10644 118 GRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTP-----LKPY--SV 168 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp-----~~~~--sf 168 (196)
.+.+||=+| |+|.++..+ .+.+|++++-++ .++.++.+|+.+.. +... .+
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 367899888 678776555 467999887654 24678888886532 1111 58
Q ss_pred eeEeeccc
Q psy10644 169 DVAVFCLS 176 (196)
Q Consensus 169 D~Vi~~~~ 176 (196)
|+|+.+..
T Consensus 138 D~Vi~~aa 145 (390)
T PLN02657 138 DVVVSCLA 145 (390)
T ss_pred cEEEECCc
Confidence 99987754
No 324
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=43.43 E-value=85 Score=27.84 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
+.++||=.| |+|.++..| .+.+|+++|... ..+.++.+|+.+--+ ..+|+|+-+.+.
T Consensus 119 ~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~--~~~D~ViHlAa~ 194 (436)
T PLN02166 119 KRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL--LEVDQIYHLACP 194 (436)
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccc--cCCCEEEECcee
Confidence 467899888 889887776 467999998532 134566666644222 357988877654
No 325
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=43.42 E-value=62 Score=25.35 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=26.7
Q ss_pred HHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEEEcCCC-c-hhHhhc--cCC-eEEEEeCCC
Q psy10644 91 GFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGE-A-KLAAEL--TQH-KVHSLDLVA 148 (196)
Q Consensus 91 ~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILDlGCG~-G-~~a~~l--~~~-~v~giDls~ 148 (196)
.|.+|+.-|..+ ..+.|. +.+||=+|||. | ..++.| .|. +++-+|...
T Consensus 3 ~Y~Rqi~l~G~e----~Q~~L~------~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 3 LYDRQIRLWGLE----AQKRLR------SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hhhHHHHHhCHH----HHHHHH------hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356666667332 223332 45789999985 2 224444 343 788887654
No 326
>KOG2671|consensus
Probab=42.82 E-value=46 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.038 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.++..|.|==.|||.+.... .|+.|+|.||+-
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDy 240 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDY 240 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccch
Confidence 45889999888888774444 578999999886
No 327
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=42.40 E-value=71 Score=23.82 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=37.3
Q ss_pred EEEcCCCchhHhhc------cCCeEEEEeCCC------CCceEEEecCCCCC-C--CCCceeeEeeccccc
Q psy10644 123 ADLGCGEAKLAAEL------TQHKVHSLDLVA------LNERVTSCDMTRTP-L--KPYSVDVAVFCLSLM 178 (196)
Q Consensus 123 LDlGCG~G~~a~~l------~~~~v~giDls~------~~~~~~~~d~~~lp-~--~~~sfD~Vi~~~~lh 178 (196)
|=+| |+|.++..+ .+.+|+++--++ .+++++.+|+.+.. + .-..+|.|+++..-.
T Consensus 2 ~V~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 2 LVFG-ATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEET-TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred EEEC-CCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 3345 677776666 567999986655 58899999986642 1 113589988888653
No 328
>KOG1562|consensus
Probab=41.19 E-value=49 Score=28.26 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCchhHhhccCC----eEEEEeCCC-------------------CCceEEEecCCCC--CCCCCceeeEe
Q psy10644 118 GRLVIADLGCGEAKLAAELTQH----KVHSLDLVA-------------------LNERVTSCDMTRT--PLKPYSVDVAV 172 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l~~~----~v~giDls~-------------------~~~~~~~~d~~~l--p~~~~sfD~Vi 172 (196)
...++|=||-|.|.+.+....+ ++.-+|+.. +.+.+..+|...+ ..+.+.||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 3578999999999998887322 444445444 4677777775332 24478999987
Q ss_pred ecccc-ccc----CHHHHHHHHHHhccCC
Q psy10644 173 FCLSL-MGT----DLAACIKEANRILKLG 196 (196)
Q Consensus 173 ~~~~l-h~~----d~~~~l~e~~rvLkpg 196 (196)
.-.+= .+. =...++.-+.+.||+|
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 54332 222 2455777788888875
No 329
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=40.52 E-value=64 Score=25.71 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=37.0
Q ss_pred EEEEcCCCchhHhhc------cCCeEEEEeCCC------CCceEEEecCCCCCC---CCCceeeEeeccccc
Q psy10644 122 IADLGCGEAKLAAEL------TQHKVHSLDLVA------LNERVTSCDMTRTPL---KPYSVDVAVFCLSLM 178 (196)
Q Consensus 122 ILDlGCG~G~~a~~l------~~~~v~giDls~------~~~~~~~~d~~~lp~---~~~sfD~Vi~~~~lh 178 (196)
|.=|| -+|..+..+ .+++|+++=-++ ..+.+.+.|+.++.- .-..||+||+.+...
T Consensus 3 IaiIg-AsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 3 IAIIG-ASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred EEEEe-cCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 44444 566665555 578999997666 355677888866432 124699999987764
No 330
>KOG3790|consensus
Probab=39.85 E-value=47 Score=29.77 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.-.-.|+|||.|..-..+ -+..-+|+|.+.
T Consensus 212 p~~f~d~gcgngllvhllna~gllgyg~dhrk 243 (529)
T KOG3790|consen 212 PNKFVDIGCGNGLLVHLLNAIGLLGYGIDHRK 243 (529)
T ss_pred ccchhccccCchhHHHHHHHHHHHhhhhHhhh
Confidence 346789999999543333 122345555554
No 331
>PLN02206 UDP-glucuronate decarboxylase
Probab=39.06 E-value=98 Score=27.51 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCCchhHhhc------cCCeEEEEeCCC-------------CCceEEEecCCCCCCCCCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL------TQHKVHSLDLVA-------------LNERVTSCDMTRTPLKPYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~-------------~~~~~~~~d~~~lp~~~~sfD~Vi~~~~l 177 (196)
++++||=.| |+|.++..| .+.+|+++|... .++.++.+|+..-.+ ..+|+|+-+.+.
T Consensus 118 ~~~kILVTG-atGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l--~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTG-GAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL--LEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEEC-cccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhh--cCCCEEEEeeee
Confidence 467899888 788887766 567999998431 235666677644222 247988877664
No 332
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=38.66 E-value=25 Score=30.83 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=36.3
Q ss_pred CceEEEecCCCC--CCCCCceeeEeeccccccc---CHHHHHHHHHHhccCC
Q psy10644 150 NERVTSCDMTRT--PLKPYSVDVAVFCLSLMGT---DLAACIKEANRILKLG 196 (196)
Q Consensus 150 ~~~~~~~d~~~l--p~~~~sfD~Vi~~~~lh~~---d~~~~l~e~~rvLkpg 196 (196)
++.+..+++.+. ..+++++|.++....+-+. ...+.++++.|.++||
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pg 327 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPG 327 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCC
Confidence 566777776553 2578999999999998333 6777899999999997
No 333
>PLN02427 UDP-apiose/xylose synthase
Probab=38.04 E-value=51 Score=28.27 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCchhHhhc------c-CCeEEEEeCCC---------------CCceEEEecCCCCC-CC--CCceeeEee
Q psy10644 119 RLVIADLGCGEAKLAAEL------T-QHKVHSLDLVA---------------LNERVTSCDMTRTP-LK--PYSVDVAVF 173 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~-~~~v~giDls~---------------~~~~~~~~d~~~lp-~~--~~sfD~Vi~ 173 (196)
.++||=.| |+|.++..+ . +.+|+++|.+. .++.++.+|+.+.. +. -..+|+||-
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH 92 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN 92 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence 56899777 778776665 3 36899999653 14678888886532 11 124798887
Q ss_pred cccc
Q psy10644 174 CLSL 177 (196)
Q Consensus 174 ~~~l 177 (196)
+.+.
T Consensus 93 lAa~ 96 (386)
T PLN02427 93 LAAI 96 (386)
T ss_pred cccc
Confidence 7664
No 334
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=37.07 E-value=2.4e+02 Score=23.27 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCC-chhHhhc---cCC-eEEEEeCCC
Q psy10644 118 GRLVIADLGCGE-AKLAAEL---TQH-KVHSLDLVA 148 (196)
Q Consensus 118 ~~~~ILDlGCG~-G~~a~~l---~~~-~v~giDls~ 148 (196)
++.+||-.|||. |..+..+ .+. .|++++.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~ 200 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLAD 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 467888888864 4444333 355 788888766
No 335
>PRK08223 hypothetical protein; Validated
Probab=37.06 E-value=1.5e+02 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=19.7
Q ss_pred CCEEEEEcCCC-ch-hHhhc--cC-CeEEEEeCCC
Q psy10644 119 RLVIADLGCGE-AK-LAAEL--TQ-HKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~-G~-~a~~l--~~-~~v~giDls~ 148 (196)
+.+||=+|||. |. .+..| .| .+++-+|...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 56899999983 43 35555 33 2777777654
No 336
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=37.03 E-value=79 Score=26.61 Aligned_cols=58 Identities=9% Similarity=0.001 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCCC-------------CceEEEecCCCCC-----CCCCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVAL-------------NERVTSCDMTRTP-----LKPYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~~-------------~~~~~~~d~~~lp-----~~~~sfD~Vi~~ 174 (196)
+.+||=.| |+|.++..+ .+++|+++|..+. ++.++.+|+.+.. +....+|+|+.+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 56788888 555554444 5679999986552 2446677775421 222347888876
Q ss_pred ccc
Q psy10644 175 LSL 177 (196)
Q Consensus 175 ~~l 177 (196)
.+.
T Consensus 83 A~~ 85 (349)
T TIGR02622 83 AAQ 85 (349)
T ss_pred Ccc
Confidence 653
No 337
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=36.76 E-value=43 Score=28.86 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=50.5
Q ss_pred CCEEEEEcCCCc-hhHhhc---cCCeEEEEeCCCC-----------CceEEEecCCCCCCCCCceeeEeeccccccc-CH
Q psy10644 119 RLVIADLGCGEA-KLAAEL---TQHKVHSLDLVAL-----------NERVTSCDMTRTPLKPYSVDVAVFCLSLMGT-DL 182 (196)
Q Consensus 119 ~~~ILDlGCG~G-~~a~~l---~~~~v~giDls~~-----------~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~-d~ 182 (196)
..+|.=||.|.- ..+..+ .+.+|+-+|++.. ++.....+..++.-.-...|+||..--+-+. .+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 456777887753 334444 5779999999962 3344444433333333567887765444454 78
Q ss_pred HHHHHHHHHhccCC
Q psy10644 183 AACIKEANRILKLG 196 (196)
Q Consensus 183 ~~~l~e~~rvLkpg 196 (196)
....+|+...+|||
T Consensus 248 kLvt~e~vk~MkpG 261 (371)
T COG0686 248 KLVTREMVKQMKPG 261 (371)
T ss_pred eehhHHHHHhcCCC
Confidence 88899999999987
No 338
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=35.82 E-value=21 Score=27.71 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCchh-Hhhc--cCCeEEEEeCCCCCceEE-EecCCC---------CCCCCCceeeEeecccc-cc-c---
Q psy10644 119 RLVIADLGCGEAKL-AAEL--TQHKVHSLDLVALNERVT-SCDMTR---------TPLKPYSVDVAVFCLSL-MG-T--- 180 (196)
Q Consensus 119 ~~~ILDlGCG~G~~-a~~l--~~~~v~giDls~~~~~~~-~~d~~~---------lp~~~~sfD~Vi~~~~l-h~-~--- 180 (196)
+.+.+=+|...--+ +..| ...+|..++-++..+.-. ...+.. ..--.++||.+.+..++ |. .
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGRY 81 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRY 81 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccccc
Confidence 34556666653322 2222 234788888766322111 111111 11225789999999888 62 1
Q ss_pred ----C---HHHHHHHHHHhccCC
Q psy10644 181 ----D---LAACIKEANRILKLG 196 (196)
Q Consensus 181 ----d---~~~~l~e~~rvLkpg 196 (196)
| ....+.++.++||||
T Consensus 82 GDPidp~Gdl~~m~~i~~vLK~G 104 (177)
T PF03269_consen 82 GDPIDPIGDLRAMAKIKCVLKPG 104 (177)
T ss_pred CCCCCccccHHHHHHHHHhhccC
Confidence 2 457888899999997
No 339
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=35.49 E-value=1.1e+02 Score=23.42 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=23.0
Q ss_pred CCCCceeeEeecccccc------c-C-------HHHHHHHHHHhccC
Q psy10644 163 LKPYSVDVAVFCLSLMG------T-D-------LAACIKEANRILKL 195 (196)
Q Consensus 163 ~~~~sfD~Vi~~~~lh~------~-d-------~~~~l~e~~rvLkp 195 (196)
+..+.||.|++++--.+ . + ...+|..+.++|++
T Consensus 71 ~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~ 117 (166)
T PF10354_consen 71 LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP 117 (166)
T ss_pred ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45688999999876533 1 1 34677788888876
No 340
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=34.94 E-value=87 Score=26.52 Aligned_cols=78 Identities=17% Similarity=0.052 Sum_probs=40.8
Q ss_pred CCEEEEEcCCC-c-hhHhhc--cCCeEEEEeCCCCCce-EEEe-cCCCCCCCCCceeeEeecccccccCHHHHHHHHHHh
Q psy10644 119 RLVIADLGCGE-A-KLAAEL--TQHKVHSLDLVALNER-VTSC-DMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRI 192 (196)
Q Consensus 119 ~~~ILDlGCG~-G-~~a~~l--~~~~v~giDls~~~~~-~~~~-d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rv 192 (196)
+.+|.=||+|. | .+++.+ .+.+|+++|.++.... +... ....+.---...|+|+++..+--....-+-.+....
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~ 215 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQ 215 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhc
Confidence 56888889884 5 345655 4779999998764321 1111 111111001345888877765221111112445555
Q ss_pred ccCC
Q psy10644 193 LKLG 196 (196)
Q Consensus 193 Lkpg 196 (196)
+|||
T Consensus 216 mk~g 219 (312)
T PRK15469 216 LPDG 219 (312)
T ss_pred CCCC
Confidence 6664
No 341
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=34.57 E-value=71 Score=25.92 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=38.0
Q ss_pred EEEEcCCCchhHhhc------cCCeEEEEeCCCC-------CceEEEecCCCCCCC---CCce-eeEeeccccc
Q psy10644 122 IADLGCGEAKLAAEL------TQHKVHSLDLVAL-------NERVTSCDMTRTPLK---PYSV-DVAVFCLSLM 178 (196)
Q Consensus 122 ILDlGCG~G~~a~~l------~~~~v~giDls~~-------~~~~~~~d~~~lp~~---~~sf-D~Vi~~~~lh 178 (196)
||=.|+ +|.++..| .+.+|+++|.+.. ++.++.+|+.+.... .... |+|+.+.+.+
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 777786 88886666 3789999998763 356777776553211 1223 8888888774
No 342
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=34.21 E-value=2.1e+02 Score=24.45 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=43.7
Q ss_pred CCEEEEEcCCC-chhHhhc----cCCeEEEEeCCCCCc---------eEEEecCCC------CCCCC-CceeeEeecccc
Q psy10644 119 RLVIADLGCGE-AKLAAEL----TQHKVHSLDLVALNE---------RVTSCDMTR------TPLKP-YSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~-G~~a~~l----~~~~v~giDls~~~~---------~~~~~d~~~------lp~~~-~sfD~Vi~~~~l 177 (196)
+.+|+=+|||. |.++..+ ...+|+.+|.++.+. ..+....++ ..... ..+|+|+-+-.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34899999996 5444333 345999999998322 111111110 01112 36899887776
Q ss_pred cccCHHHHHHHHHHhccCC
Q psy10644 178 MGTDLAACIKEANRILKLG 196 (196)
Q Consensus 178 h~~d~~~~l~e~~rvLkpg 196 (196)
...++.++.+++|||
T Consensus 248 ----~~~~~~~ai~~~r~g 262 (350)
T COG1063 248 ----SPPALDQALEALRPG 262 (350)
T ss_pred ----CHHHHHHHHHHhcCC
Confidence 344777888888775
No 343
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=33.51 E-value=2.3e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=21.6
Q ss_pred CEEEEEcCCCchh----Hhhc----cCCeEEEEeCCC
Q psy10644 120 LVIADLGCGEAKL----AAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 120 ~~ILDlGCG~G~~----a~~l----~~~~v~giDls~ 148 (196)
...+=.|+|||.. +++| ++.+++++|...
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~ 206 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEG 206 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCC
Confidence 4567789999954 6666 446999999875
No 344
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=32.36 E-value=34 Score=24.99 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=13.7
Q ss_pred EEcCCCc--hhHhhc------cCCeEEEEeCCC
Q psy10644 124 DLGCGEA--KLAAEL------TQHKVHSLDLVA 148 (196)
Q Consensus 124 DlGCG~G--~~a~~l------~~~~v~giDls~ 148 (196)
|||+..| .....+ ...+|+++|.+|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p 33 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP 33 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---H
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH
Confidence 8999999 332221 456899999988
No 345
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=31.06 E-value=88 Score=26.13 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCCC-------------------CceEEEecCCCCC-----CCCCce
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVAL-------------------NERVTSCDMTRTP-----LKPYSV 168 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~~-------------------~~~~~~~d~~~lp-----~~~~sf 168 (196)
+.+||=.|+ +|.++..+ .+.+|++++..+. .+.++.+|+.+.. +....+
T Consensus 6 ~~~vlVTGa-tGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 84 (340)
T PLN02653 6 RKVALITGI-TGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKP 84 (340)
T ss_pred CCEEEEECC-CCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCC
Confidence 467888884 45444443 5779999875431 2467778876532 222246
Q ss_pred eeEeecccc
Q psy10644 169 DVAVFCLSL 177 (196)
Q Consensus 169 D~Vi~~~~l 177 (196)
|+|+.+.+.
T Consensus 85 d~Vih~A~~ 93 (340)
T PLN02653 85 DEVYNLAAQ 93 (340)
T ss_pred CEEEECCcc
Confidence 888877665
No 346
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=31.03 E-value=55 Score=27.67 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCchhHhhc-------cCCeEEEEeCCC----------------CCceE----EEecCCCC-----CCCCCceeeEeecc
Q psy10644 128 GEAKLAAEL-------TQHKVHSLDLVA----------------LNERV----TSCDMTRT-----PLKPYSVDVAVFCL 175 (196)
Q Consensus 128 G~G~~a~~l-------~~~~v~giDls~----------------~~~~~----~~~d~~~l-----p~~~~sfD~Vi~~~ 175 (196)
|+|.++..| ...+++.+|.++ .++.+ +.+|+.+- -+.....|+|+-..
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEECh
Confidence 667776666 345899999997 13443 36676542 25566899999999
Q ss_pred cc-ccc----CHHHHHH
Q psy10644 176 SL-MGT----DLAACIK 187 (196)
Q Consensus 176 ~l-h~~----d~~~~l~ 187 (196)
++ |.. ++.++++
T Consensus 86 A~KhVpl~E~~p~eav~ 102 (293)
T PF02719_consen 86 ALKHVPLMEDNPFEAVK 102 (293)
T ss_dssp ----HHHHCCCHHHHHH
T ss_pred hcCCCChHHhCHHHHHH
Confidence 99 743 5665543
No 347
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=31.01 E-value=2.4e+02 Score=21.49 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=35.7
Q ss_pred CEEEEEcCCCchhHhhc-c---CCeEEEEeCCC-----------------CCceEEEecCCCCC---------CCCCcee
Q psy10644 120 LVIADLGCGEAKLAAEL-T---QHKVHSLDLVA-----------------LNERVTSCDMTRTP---------LKPYSVD 169 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l-~---~~~v~giDls~-----------------~~~~~~~~d~~~lp---------~~~~sfD 169 (196)
..|+.||||-=..+..+ . +..++-+|+-. .+.+++.+|+.+.. +..+.--
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~pt 159 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPT 159 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCe
Confidence 38999999988777777 2 33555666554 13467888886421 3344555
Q ss_pred eEeecccccccCHHH
Q psy10644 170 VAVFCLSLMGTDLAA 184 (196)
Q Consensus 170 ~Vi~~~~lh~~d~~~ 184 (196)
++++-.++++.+...
T Consensus 160 l~i~Egvl~Yl~~~~ 174 (183)
T PF04072_consen 160 LFIAEGVLMYLSPEQ 174 (183)
T ss_dssp EEEEESSGGGS-HHH
T ss_pred EEEEcchhhcCCHHH
Confidence 566666666664433
No 348
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=30.88 E-value=1e+02 Score=27.18 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=37.2
Q ss_pred CEEEEEcCCCchhHhhc------cC-CeEEEEeCCC-----------CCceEEEecCCCCC-CC--CCceeeEeecccc
Q psy10644 120 LVIADLGCGEAKLAAEL------TQ-HKVHSLDLVA-----------LNERVTSCDMTRTP-LK--PYSVDVAVFCLSL 177 (196)
Q Consensus 120 ~~ILDlGCG~G~~a~~l------~~-~~v~giDls~-----------~~~~~~~~d~~~lp-~~--~~sfD~Vi~~~~l 177 (196)
++||=|||| ..++.. .+ .+|+..|-+. .+++..+.|+.+.+ +. -..+|+|+.+.--
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999995 443333 22 5999999996 35778888887653 10 1345998887655
No 349
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=30.74 E-value=1e+02 Score=24.62 Aligned_cols=54 Identities=28% Similarity=0.273 Sum_probs=34.9
Q ss_pred EEEEEcCCC--chhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCC----CCCCCceeeEeec
Q psy10644 121 VIADLGCGE--AKLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRT----PLKPYSVDVAVFC 174 (196)
Q Consensus 121 ~ILDlGCG~--G~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~l----p~~~~sfD~Vi~~ 174 (196)
+++=+|||. +.+++.| .++.|+.+|..+ ....++++|..+. ...-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 566788884 2446666 567999999988 2456677776442 1233567887754
No 350
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=30.54 E-value=74 Score=26.18 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=38.4
Q ss_pred EEEEEcCCC--chhHhhc--cCCeEEEEeCCCCCce------EEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHH
Q psy10644 121 VIADLGCGE--AKLAAEL--TQHKVHSLDLVALNER------VTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEAN 190 (196)
Q Consensus 121 ~ILDlGCG~--G~~a~~l--~~~~v~giDls~~~~~------~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~ 190 (196)
+|.=||+|. |.++..| .+.+|+++|.++.... .+........ .-...|+|+.+.-.. ....+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~-~~~~aDlVilavp~~--~~~~~~~~l~ 78 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLS-LLKDCDLVILALPIG--LLLPPSEQLI 78 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHh-HhcCCCEEEEcCCHH--HHHHHHHHHH
Confidence 456678774 4556666 4679999998873211 1100000111 123568888775432 1234566666
Q ss_pred HhccCC
Q psy10644 191 RILKLG 196 (196)
Q Consensus 191 rvLkpg 196 (196)
..++++
T Consensus 79 ~~l~~~ 84 (279)
T PRK07417 79 PALPPE 84 (279)
T ss_pred HhCCCC
Confidence 666553
No 351
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=30.42 E-value=97 Score=25.95 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=34.2
Q ss_pred EEEEEcCCCchhHhhc------cCCeEEEEeCCCC--------------------CceEEEecCCCCC-----CCCCcee
Q psy10644 121 VIADLGCGEAKLAAEL------TQHKVHSLDLVAL--------------------NERVTSCDMTRTP-----LKPYSVD 169 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l------~~~~v~giDls~~--------------------~~~~~~~d~~~lp-----~~~~sfD 169 (196)
+||=.| |+|.++..+ .+.+|+++|..+. ++.++.+|+.+.. +....+|
T Consensus 2 ~vlVTG-atGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 2 IALITG-ITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred eEEEEc-CCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 355555 556665554 5678999886531 3567788886532 2223478
Q ss_pred eEeecccc
Q psy10644 170 VAVFCLSL 177 (196)
Q Consensus 170 ~Vi~~~~l 177 (196)
+|+-+.+.
T Consensus 81 ~ViH~Aa~ 88 (343)
T TIGR01472 81 EIYNLAAQ 88 (343)
T ss_pred EEEECCcc
Confidence 88877665
No 352
>KOG0024|consensus
Probab=30.41 E-value=69 Score=27.67 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHhhcCCCCCEEEEEcCCC-----chhHhhccCCeEEEEeCCC
Q psy10644 109 KSIQERESKGRLVIADLGCGE-----AKLAAELTQHKVHSLDLVA 148 (196)
Q Consensus 109 ~~l~~~~~~~~~~ILDlGCG~-----G~~a~~l~~~~v~giDls~ 148 (196)
.....-..+.+.+||=+|+|. |.+++.+...+|+.+|+++
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 333333445689999999994 5556666566999999999
No 353
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.51 E-value=67 Score=25.21 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCCCceeeEeeccccccc-------------CHHHHHHHHHHhccC
Q psy10644 163 LKPYSVDVAVFCLSLMGT-------------DLAACIKEANRILKL 195 (196)
Q Consensus 163 ~~~~sfD~Vi~~~~lh~~-------------d~~~~l~e~~rvLkp 195 (196)
+..+..|+|+++.+||.. +.+.++..+..+|+|
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~ 91 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI 91 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 456677999999999632 244555555555554
No 354
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.40 E-value=83 Score=26.94 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=39.0
Q ss_pred EEEEEcCCCchhHhhc------cCCeEEEEeCCC-------CC--ceEEEecCCCCC-----CCCCceeeEeecccc
Q psy10644 121 VIADLGCGEAKLAAEL------TQHKVHSLDLVA-------LN--ERVTSCDMTRTP-----LKPYSVDVAVFCLSL 177 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l------~~~~v~giDls~-------~~--~~~~~~d~~~lp-----~~~~sfD~Vi~~~~l 177 (196)
+||=.| |.|.++... .+.+|+.+|.-. .. ..|+++|+.+-. |....+|.|+-+.++
T Consensus 2 ~iLVtG-GAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~ 77 (329)
T COG1087 2 KVLVTG-GAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAAS 77 (329)
T ss_pred eEEEec-CcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccc
Confidence 466555 777664333 678999999544 23 589999986532 567789998877665
No 355
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=29.19 E-value=1.3e+02 Score=24.74 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=17.4
Q ss_pred CCEEEEEcCCCchhHhhc---------cCCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL---------TQHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---------~~~~v~giDls~ 148 (196)
...|+|+||=.|..+..+ .+.+|+++|-=.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFe 113 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFE 113 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SS
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 568999999999765433 245799998544
No 356
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=28.52 E-value=77 Score=25.33 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.+.+++.+... +..+++|.=||+|.++..+ .+..|+.-|+.+
T Consensus 9 ~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 9 AKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp HHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 34455554322 4779999999999999998 567899999988
No 357
>PLN02214 cinnamoyl-CoA reductase
Probab=28.38 E-value=1.8e+02 Score=24.57 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=36.2
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCCC---------------CceEEEecCCCCC-CC--CCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVAL---------------NERVTSCDMTRTP-LK--PYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~~---------------~~~~~~~d~~~lp-~~--~~sfD~Vi~~ 174 (196)
+.+||=.|+ +|.++..+ .+++|++++.+.. .+.++.+|+.+.. +. -..+|+|+.+
T Consensus 10 ~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 10 GKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 567888885 67666555 4678988875431 3556777875421 11 1247888777
Q ss_pred ccc
Q psy10644 175 LSL 177 (196)
Q Consensus 175 ~~l 177 (196)
.+.
T Consensus 89 A~~ 91 (342)
T PLN02214 89 ASP 91 (342)
T ss_pred cCC
Confidence 654
No 358
>KOG1227|consensus
Probab=28.08 E-value=34 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCchhHhhc---c-CCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL---T-QHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l---~-~~~v~giDls~ 148 (196)
+..|+|+=+|-|.|+..+ . ...|+++|.+|
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp 228 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP 228 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCH
Confidence 578999999999998844 3 34999999999
No 359
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=27.92 E-value=1.4e+02 Score=21.68 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCC--chhHhhc--c-CCeEEEEeCCC
Q psy10644 118 GRLVIADLGCGE--AKLAAEL--T-QHKVHSLDLVA 148 (196)
Q Consensus 118 ~~~~ILDlGCG~--G~~a~~l--~-~~~v~giDls~ 148 (196)
.+.+|+=+|||. ...+..+ . ...|+.+|.++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357899999973 1223333 3 35799998876
No 360
>PRK12320 hypothetical protein; Provisional
Probab=27.88 E-value=95 Score=29.59 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=36.8
Q ss_pred EEEEEcCCCchhHhhc------cCCeEEEEeCCC-----CCceEEEecCCCCCCC--CCceeeEeecccc
Q psy10644 121 VIADLGCGEAKLAAEL------TQHKVHSLDLVA-----LNERVTSCDMTRTPLK--PYSVDVAVFCLSL 177 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l------~~~~v~giDls~-----~~~~~~~~d~~~lp~~--~~sfD~Vi~~~~l 177 (196)
+||=.| |+|.++..+ .+++|+++|..+ .++.++.+|+.+..+. -..+|+|+.+...
T Consensus 2 kILVTG-AaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~ 70 (699)
T PRK12320 2 QILVTD-ATGAVGRSVTRQLIAAGHTVSGIAQHPHDALDPRVDYVCASLRNPVLQELAGEADAVIHLAPV 70 (699)
T ss_pred EEEEEC-CCCHHHHHHHHHHHhCCCEEEEEeCChhhcccCCceEEEccCCCHHHHHHhcCCCEEEEcCcc
Confidence 566666 667666555 467999999654 3567888888653221 1247888877655
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.84 E-value=86 Score=27.46 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------CCceEEEecCCCCC----CCCCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------LNERVTSCDMTRTP----LKPYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------~~~~~~~~d~~~lp----~~~~sfD~Vi~~ 174 (196)
..+|+=+||| .++..+ .+..|+.+|.++ .++.++.+|..+.. ..-..+|.|+++
T Consensus 231 ~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 4678877775 554444 467999999887 24567788875321 223467777654
No 362
>KOG2014|consensus
Probab=27.78 E-value=1.7e+02 Score=25.03 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHhhhhcCCCChHHHHHHHHHhhcCCCCCEEEEE-cCCCch-hHhhc
Q psy10644 88 YHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADL-GCGEAK-LAAEL 136 (196)
Q Consensus 88 y~~~y~~~~~~w~~~~~~~~~~~l~~~~~~~~~~ILDl-GCG~G~-~a~~l 136 (196)
-..-|.+|++-|.-+.... |. ..+||=+ |||.|. ++..+
T Consensus 10 E~alYDRQIRLWG~~AQ~~----lr------~s~VLlig~k~lgaEiaKni 50 (331)
T KOG2014|consen 10 EIALYDRQIRLWGLEAQRR----LR------KSHVLLIGGKGLGAEIAKNI 50 (331)
T ss_pred HHHHHHHHHHHccHHHHHh----hh------hceEEEecCchHHHHHHHHh
Confidence 3456889999995543222 21 3456666 455552 34444
No 363
>PRK08818 prephenate dehydrogenase; Provisional
Probab=27.70 E-value=96 Score=27.08 Aligned_cols=69 Identities=25% Similarity=0.184 Sum_probs=37.7
Q ss_pred CCEEEEEcC-C--CchhHhhcc---CCeEEEEeCCCCCceEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHh
Q psy10644 119 RLVIADLGC-G--EAKLAAELT---QHKVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRI 192 (196)
Q Consensus 119 ~~~ILDlGC-G--~G~~a~~l~---~~~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rv 192 (196)
..+|+=||. | .|.+++.|. +.+|+|+|..... .....-.-...|+|+.|--... ...++.++...
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-------~~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~ 74 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-------SLDPATLLQRADVLIFSAPIRH--TAALIEEYVAL 74 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-------cCCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhh
Confidence 347888886 5 244556663 5699999975211 0111100134799887765422 24555555554
Q ss_pred ---ccCC
Q psy10644 193 ---LKLG 196 (196)
Q Consensus 193 ---Lkpg 196 (196)
|+||
T Consensus 75 ~~~l~~~ 81 (370)
T PRK08818 75 AGGRAAG 81 (370)
T ss_pred hcCCCCC
Confidence 5664
No 364
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=27.52 E-value=72 Score=29.79 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=12.7
Q ss_pred CCCEEEEEcCCCchhHhhc
Q psy10644 118 GRLVIADLGCGEAKLAAEL 136 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l 136 (196)
+..+|| +-||+|.-+-.+
T Consensus 505 k~mKIL-vaCGsGiGTStm 522 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMM 522 (602)
T ss_pred cccEEE-EECCCCchHHHH
Confidence 456777 789999765555
No 365
>KOG2782|consensus
Probab=27.37 E-value=24 Score=28.83 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l----~~~~v~giDls~ 148 (196)
.+.+++.+ .+.++...+|+--|.|..+..+ +..+++++|-.|
T Consensus 32 ~devl~~l---spv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP 77 (303)
T KOG2782|consen 32 LDEVLDIL---SPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDP 77 (303)
T ss_pred hhhHHHHc---CCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccCh
Confidence 45556655 4556789999999999887777 334788899888
No 366
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=27.25 E-value=3.1e+02 Score=22.19 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHhhcCCCCCEEEEEcCCCchh--Hhhc------cCCeEEEEeCCC
Q psy10644 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKL--AAEL------TQHKVHSLDLVA 148 (196)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~--a~~l------~~~~v~giDls~ 148 (196)
+....++|..|..-. .-..|++..|+.|.. +..| .+.++++|-..+
T Consensus 26 ep~~aEfISAlAAG~--nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~ 79 (218)
T PF07279_consen 26 EPGVAEFISALAAGW--NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE 79 (218)
T ss_pred CCCHHHHHHHHhccc--cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh
Confidence 444667777764322 235789997665432 3333 456888886554
No 367
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=26.91 E-value=70 Score=27.33 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=41.3
Q ss_pred CCEEEEEcCCC-c-hhHhhc--cCCeEEEEeCCCCCc-eEEEecCCCCCCCCCceeeEeecccccccCHHHHHHHHHHhc
Q psy10644 119 RLVIADLGCGE-A-KLAAEL--TQHKVHSLDLVALNE-RVTSCDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRIL 193 (196)
Q Consensus 119 ~~~ILDlGCG~-G-~~a~~l--~~~~v~giDls~~~~-~~~~~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvL 193 (196)
+.+|.=||+|. | .+++.+ .+.+|+++|.++... .+... ...+.---...|+|+.+.-+.......+.+++...+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~-~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~m 224 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTY-KDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHV 224 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhc-cCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcC
Confidence 56888899986 3 245555 577999999887321 11100 011110113468887766653221222345666666
Q ss_pred cCC
Q psy10644 194 KLG 196 (196)
Q Consensus 194 kpg 196 (196)
|+|
T Consensus 225 k~g 227 (330)
T PRK12480 225 KKG 227 (330)
T ss_pred CCC
Confidence 664
No 368
>PRK14851 hypothetical protein; Provisional
Probab=26.90 E-value=1.7e+02 Score=27.83 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=19.1
Q ss_pred CCEEEEEcCC-Cchh-Hhhc--cC-CeEEEEeCCC
Q psy10644 119 RLVIADLGCG-EAKL-AAEL--TQ-HKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG-~G~~-a~~l--~~-~~v~giDls~ 148 (196)
+.+|+=+||| .|.. +..| .| .+++-+|...
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 5689999999 5654 4555 33 2666666443
No 369
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=26.88 E-value=1.2e+02 Score=25.61 Aligned_cols=72 Identities=22% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCC-chhHhhc---cCCeEEEEeC---CC--------CCceEEEecCCCCC----CCCCceeeEeeccccc
Q psy10644 118 GRLVIADLGCGE-AKLAAEL---TQHKVHSLDL---VA--------LNERVTSCDMTRTP----LKPYSVDVAVFCLSLM 178 (196)
Q Consensus 118 ~~~~ILDlGCG~-G~~a~~l---~~~~v~giDl---s~--------~~~~~~~~d~~~lp----~~~~sfD~Vi~~~~lh 178 (196)
++.+||=+|||. |.++..+ .+.+|++++. ++ ....++ +..... ...+.+|+|+-+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC--
Confidence 467888888863 3333333 4668999986 33 122222 211111 01235788776654
Q ss_pred ccCHHHHHHHHHHhccCC
Q psy10644 179 GTDLAACIKEANRILKLG 196 (196)
Q Consensus 179 ~~d~~~~l~e~~rvLkpg 196 (196)
....+.++.++|++|
T Consensus 248 ---~~~~~~~~~~~l~~~ 262 (355)
T cd08230 248 ---VPPLAFEALPALAPN 262 (355)
T ss_pred ---CHHHHHHHHHHccCC
Confidence 123567777777764
No 370
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=26.79 E-value=77 Score=29.43 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=32.3
Q ss_pred EEEEEcCCCchhHhhc------cCCeEEEEeCCC--------CCceEEEecCCCCC----CCCCceeeEeec
Q psy10644 121 VIADLGCGEAKLAAEL------TQHKVHSLDLVA--------LNERVTSCDMTRTP----LKPYSVDVAVFC 174 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l------~~~~v~giDls~--------~~~~~~~~d~~~lp----~~~~sfD~Vi~~ 174 (196)
+|+=+|+| .+++.+ .+..++.+|.++ .+..++.+|..+.. ..-+..|+|+++
T Consensus 402 ~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 402 QVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 45555554 554444 467999999998 35678888886532 122456666554
No 371
>KOG2078|consensus
Probab=26.44 E-value=9.4 Score=34.03 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 117 KGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
+.+..|.|+=||-|-++..+ .+++|++.|+.+
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp 281 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP 281 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCcEEEecCCCH
Confidence 45788999999999887776 679999999999
No 372
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=26.10 E-value=2.1e+02 Score=19.21 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHHHhhc-CCCCCEEEEEcCCCchh-Hhhc-----cCCeEEEEeC
Q psy10644 106 IIIKSIQERE-SKGRLVIADLGCGEAKL-AAEL-----TQHKVHSLDL 146 (196)
Q Consensus 106 ~~~~~l~~~~-~~~~~~ILDlGCG~G~~-a~~l-----~~~~v~giDl 146 (196)
.-+++++... .....+||=|||-+|.- +..+ .+...+|+-.
T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 3344444322 22347899999999843 3222 3456666543
No 373
>PRK10458 DNA cytosine methylase; Provisional
Probab=26.04 E-value=1.4e+02 Score=27.00 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~ 148 (196)
..+++|+=||.|.+..-| .+. -|.++|+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~ 120 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK 120 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH
Confidence 569999999999997777 455 556789887
No 374
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=25.95 E-value=1.4e+02 Score=24.60 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=19.2
Q ss_pred CCCCEEEEEcCCC-chhHhhc---cCCe-EEEEeCCC
Q psy10644 117 KGRLVIADLGCGE-AKLAAEL---TQHK-VHSLDLVA 148 (196)
Q Consensus 117 ~~~~~ILDlGCG~-G~~a~~l---~~~~-v~giDls~ 148 (196)
.++.+||-+|+|. |..+..+ .+.+ |+.++.++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~ 194 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE 194 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 3467888888642 3333333 3555 78887766
No 375
>KOG1430|consensus
Probab=25.82 E-value=1.5e+02 Score=25.91 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCchhHhhc--------cCCeEEEEeCCCC--------------CceEEEecCCCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL--------TQHKVHSLDLVAL--------------NERVTSCDMTRTP 162 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--------~~~~v~giDls~~--------------~~~~~~~d~~~lp 162 (196)
..++|=+| |.|.+++.+ ...+|..+|..+. .+.++.+|+.+.+
T Consensus 4 ~~~vlVtG-G~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~ 68 (361)
T KOG1430|consen 4 KLSVLVTG-GSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDAN 68 (361)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhh
Confidence 34677777 788888777 1358889998772 4667778886654
No 376
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.70 E-value=1.2e+02 Score=25.77 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCchhHhhc--cCC-eEEEEeCCC----------CCceEEEecCCCCCCC---CCceeeEeec
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQH-KVHSLDLVA----------LNERVTSCDMTRTPLK---PYSVDVAVFC 174 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~-~v~giDls~----------~~~~~~~~d~~~lp~~---~~sfD~Vi~~ 174 (196)
..+++||=||.|.+..-| .+. -+.++|+.+ +...++..|+..+... ...+|+++..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeC
Confidence 468999988888876666 555 455679988 2245666777654321 2278998864
No 377
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=25.42 E-value=1.2e+02 Score=28.44 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCchhHhhc-----c--CCeEEEEeCCC---------CCceEEEecCCCCC--CC--CCceeeEeecccc
Q psy10644 118 GRLVIADLGCGEAKLAAEL-----T--QHKVHSLDLVA---------LNERVTSCDMTRTP--LK--PYSVDVAVFCLSL 177 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l-----~--~~~v~giDls~---------~~~~~~~~d~~~lp--~~--~~sfD~Vi~~~~l 177 (196)
++++||=.| |+|.++..+ . +++|+++|..+ .++.++.+|+.+.. +. -..+|+|+-+.+.
T Consensus 314 ~~~~VLVTG-atGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~ 392 (660)
T PRK08125 314 RRTRVLILG-VNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAI 392 (660)
T ss_pred cCCEEEEEC-CCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECccc
Confidence 467898888 778776666 2 47999999755 24678888886421 11 1357988866554
No 378
>PRK13243 glyoxylate reductase; Reviewed
Probab=24.76 E-value=53 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=23.1
Q ss_pred CCEEEEEcCCC-c-hhHhhc--cCCeEEEEeCCCC
Q psy10644 119 RLVIADLGCGE-A-KLAAEL--TQHKVHSLDLVAL 149 (196)
Q Consensus 119 ~~~ILDlGCG~-G-~~a~~l--~~~~v~giDls~~ 149 (196)
+.+|.=||+|. | .+++.+ .+.+|+++|.++.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~ 184 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRK 184 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 67899999985 4 345555 5679999998763
No 379
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=24.44 E-value=2.7e+02 Score=23.69 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
+..|+-+.||++.....+ .+..++++|-..
T Consensus 239 ~~~ilh~cg~~~~~~~~~~~~~~~~is~d~~~ 270 (346)
T PRK00115 239 DVPVILFGKGAGELLEAMAETGADVVGLDWTV 270 (346)
T ss_pred CCCEEEEcCCcHHHHHHHHhcCCCEEeeCCCC
Confidence 456888888888776666 456788777654
No 380
>KOG1371|consensus
Probab=24.35 E-value=73 Score=27.49 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=38.3
Q ss_pred CEEEEEc----CCCchhHhhc-cCCeEEEEeCCC-----------------CCceEEEecCCCCC-----CCCCceeeEe
Q psy10644 120 LVIADLG----CGEAKLAAEL-TQHKVHSLDLVA-----------------LNERVTSCDMTRTP-----LKPYSVDVAV 172 (196)
Q Consensus 120 ~~ILDlG----CG~G~~a~~l-~~~~v~giDls~-----------------~~~~~~~~d~~~lp-----~~~~sfD~Vi 172 (196)
.+||=.| ||+....+.+ .+..|+++|.=. ..+.|...|+.+.+ |....||.|+
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~ 82 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVM 82 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEE
Confidence 4567666 2333334444 678999999533 46788999987654 4566788887
Q ss_pred ecccc
Q psy10644 173 FCLSL 177 (196)
Q Consensus 173 ~~~~l 177 (196)
...++
T Consensus 83 Hfa~~ 87 (343)
T KOG1371|consen 83 HFAAL 87 (343)
T ss_pred eehhh
Confidence 76655
No 381
>PLN02572 UDP-sulfoquinovose synthase
Probab=23.89 E-value=1.4e+02 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEe
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLD 145 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giD 145 (196)
+.+||=.| |+|.++..+ .+++|+++|
T Consensus 47 ~k~VLVTG-atGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIG-GDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCeEEEEe
Confidence 56788777 677776655 477999987
No 382
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=23.86 E-value=3.1e+02 Score=23.06 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 105 DIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 105 ~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
..+++.+....+ +..|+-+.||+..+...+ .+..+.++|...
T Consensus 218 k~i~~~i~~~~~--~~~ilh~cg~~~~~~~~~~~~~~~~~s~d~~~ 261 (335)
T cd00717 218 KRIIEEVKKRLP--GVPVILFAKGAGGLLEDLAQLGADVVGLDWRV 261 (335)
T ss_pred HHHHHHHHHhCC--CCCEEEEcCCCHHHHHHHHhcCCCEEEeCCCC
Confidence 344444443321 456888888888776666 356888888654
No 383
>PLN02240 UDP-glucose 4-epimerase
Probab=23.67 E-value=1.6e+02 Score=24.47 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCC------------------CCceEEEecCCCCC-----CCCCcee
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVA------------------LNERVTSCDMTRTP-----LKPYSVD 169 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~------------------~~~~~~~~d~~~lp-----~~~~sfD 169 (196)
+.+||=.| |+|.++..+ .+.+|+++|... .++.++.+|+.+.. +....+|
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d 83 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFD 83 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCC
Confidence 45788788 666665544 467999997431 24667788885432 2223578
Q ss_pred eEeecccc
Q psy10644 170 VAVFCLSL 177 (196)
Q Consensus 170 ~Vi~~~~l 177 (196)
+|+.+.+.
T Consensus 84 ~vih~a~~ 91 (352)
T PLN02240 84 AVIHFAGL 91 (352)
T ss_pred EEEEcccc
Confidence 88877654
No 384
>KOG1115|consensus
Probab=23.52 E-value=53 Score=29.22 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=30.5
Q ss_pred EEEEEcCCCchhHhhccCC-----eEEEEeCCCCCceEEEecCCCCCCCCCceeeEeec
Q psy10644 121 VIADLGCGEAKLAAELTQH-----KVHSLDLVALNERVTSCDMTRTPLKPYSVDVAVFC 174 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l~~~-----~v~giDls~~~~~~~~~d~~~lp~~~~sfD~Vi~~ 174 (196)
-|+-+| |.|.|...|.++ ++-|+++..+...++.-.+.---.+.++-|.|+++
T Consensus 220 Giv~VG-GDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~ 277 (516)
T KOG1115|consen 220 GIVAVG-GDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMC 277 (516)
T ss_pred cEEEec-CchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEE
Confidence 477777 999998888443 77888877643332222221111345566665543
No 385
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=23.50 E-value=88 Score=26.06 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=37.6
Q ss_pred EEEEEcCCCc--hhHhhc--cCCeEEEEeCCCCCceE------EE-ecCCCCCCCCCceeeEeecccccccCHHHHHHHH
Q psy10644 121 VIADLGCGEA--KLAAEL--TQHKVHSLDLVALNERV------TS-CDMTRTPLKPYSVDVAVFCLSLMGTDLAACIKEA 189 (196)
Q Consensus 121 ~ILDlGCG~G--~~a~~l--~~~~v~giDls~~~~~~------~~-~d~~~lp~~~~sfD~Vi~~~~lh~~d~~~~l~e~ 189 (196)
+|.=||+|.- .++..| .+.+|+++|.++..+.- .. .+..++.-.-...|+|+++..-. ....++.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~--~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG--IVDAVLEEL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch--HHHHHHHHH
Confidence 4666788753 345555 56799999998732110 00 11111100012347776653321 345566677
Q ss_pred HHhccCC
Q psy10644 190 NRILKLG 196 (196)
Q Consensus 190 ~rvLkpg 196 (196)
...|++|
T Consensus 80 ~~~l~~g 86 (298)
T TIGR00872 80 APTLEKG 86 (298)
T ss_pred HhhCCCC
Confidence 6667654
No 386
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=23.38 E-value=2.1e+02 Score=22.72 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=35.3
Q ss_pred CCEEEEEcCCC--c-hhHhhc--cCCeEEEEeCCC----------CCceEEEecCCCCC--CC--C-CceeeEeecccc
Q psy10644 119 RLVIADLGCGE--A-KLAAEL--TQHKVHSLDLVA----------LNERVTSCDMTRTP--LK--P-YSVDVAVFCLSL 177 (196)
Q Consensus 119 ~~~ILDlGCG~--G-~~a~~l--~~~~v~giDls~----------~~~~~~~~d~~~lp--~~--~-~sfD~Vi~~~~l 177 (196)
..+||=+|+.. | .++..| .+++|+++.-++ .++.++.+|+.+.+ +. - ..+|+|+++...
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 56899999622 2 223333 467888875332 24778888886521 11 1 358999977654
No 387
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=23.08 E-value=1.1e+02 Score=26.14 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCchh--Hhhc--cCCeEEEEeCCC---------------CCceEEEecCCCCCCCC---CceeeEe
Q psy10644 118 GRLVIADLGCGEAKL--AAEL--TQHKVHSLDLVA---------------LNERVTSCDMTRTPLKP---YSVDVAV 172 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~--a~~l--~~~~v~giDls~---------------~~~~~~~~d~~~lp~~~---~sfD~Vi 172 (196)
.+..|+=+| -.-.. +..| .+.+|..+|+.+ .|+..+..|+.+ |+|+ ..||+.+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeee
Confidence 356788888 33333 3333 455899999998 468888889866 5554 5788865
No 388
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=22.82 E-value=1.2e+02 Score=28.16 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCchhHhhc------cCCeEEEEeCCCC-----------------------CceEEEecCCCCC-C--CC
Q psy10644 118 GRLVIADLGCGEAKLAAEL------TQHKVHSLDLVAL-----------------------NERVTSCDMTRTP-L--KP 165 (196)
Q Consensus 118 ~~~~ILDlGCG~G~~a~~l------~~~~v~giDls~~-----------------------~~~~~~~d~~~lp-~--~~ 165 (196)
.+.+||=+|+ +|.++..+ .+++|++++.+.. ++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 4667888885 45554444 5778998876541 2567888886532 1 12
Q ss_pred CceeeEeecccc
Q psy10644 166 YSVDVAVFCLSL 177 (196)
Q Consensus 166 ~sfD~Vi~~~~l 177 (196)
+.+|+||++...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 457998887654
No 389
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.28 E-value=3.7e+02 Score=24.18 Aligned_cols=59 Identities=17% Similarity=-0.013 Sum_probs=36.0
Q ss_pred CCEEEEEcCC-Cchh-Hhhc--cCCeEEEEeCCCCC------------ceEEEecCCCCCCCCCceeeEeecccccc
Q psy10644 119 RLVIADLGCG-EAKL-AAEL--TQHKVHSLDLVALN------------ERVTSCDMTRTPLKPYSVDVAVFCLSLMG 179 (196)
Q Consensus 119 ~~~ILDlGCG-~G~~-a~~l--~~~~v~giDls~~~------------~~~~~~d~~~lp~~~~sfD~Vi~~~~lh~ 179 (196)
+++|+=+|=| +|.- ++.| .+..|+..|..+.. +.+..+.-.. +....+|+|+.+-.+-.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccch--hccccCCEEEECCCCCC
Confidence 5678888776 4433 4444 57899999987733 2222221111 33467899998887733
No 390
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=22.21 E-value=3.1e+02 Score=23.10 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 119 RLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
+..||-+.||+......+ .+..++++|-..
T Consensus 233 ~~~ilh~cg~~~~~~~~~~~~~~~~~s~d~~~ 264 (338)
T TIGR01464 233 NVPVILFAKGAGHLLEELAETGADVVGLDWTV 264 (338)
T ss_pred CCCEEEEeCCcHHHHHHHHhcCCCEEEeCCCC
Confidence 345888878887666666 466888887654
No 391
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=21.95 E-value=2.5e+02 Score=23.59 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=18.9
Q ss_pred CCEEEEEcCCC-c-hhHhhc--cC-CeEEEEeCCC
Q psy10644 119 RLVIADLGCGE-A-KLAAEL--TQ-HKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG~-G-~~a~~l--~~-~~v~giDls~ 148 (196)
..+||=+|||. | ..+..| .| .+++-+|...
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 56899999983 2 234444 33 3777777654
No 392
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.76 E-value=2e+02 Score=23.76 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=35.3
Q ss_pred EEEEEcCCCchhHhhc------cCCeEEEEeCCC--------CCceEEEecCCCCC-CC--CCceeeEeeccc
Q psy10644 121 VIADLGCGEAKLAAEL------TQHKVHSLDLVA--------LNERVTSCDMTRTP-LK--PYSVDVAVFCLS 176 (196)
Q Consensus 121 ~ILDlGCG~G~~a~~l------~~~~v~giDls~--------~~~~~~~~d~~~lp-~~--~~sfD~Vi~~~~ 176 (196)
+||=.| |+|.++..+ .+++|++++-++ .++.++.+|+.+.. +. -..+|+|+.+..
T Consensus 2 kIlVtG-atG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIG-ATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 466555 778776666 567999997653 36778888876421 11 124688887543
No 393
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=21.62 E-value=1.6e+02 Score=24.66 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=38.8
Q ss_pred CEEEEEcCC--CchhHhhc--cCC--eEEEEeCCCCCce----EEEec-C-CCC-CCCCCceeeEeecccccccCHHHHH
Q psy10644 120 LVIADLGCG--EAKLAAEL--TQH--KVHSLDLVALNER----VTSCD-M-TRT-PLKPYSVDVAVFCLSLMGTDLAACI 186 (196)
Q Consensus 120 ~~ILDlGCG--~G~~a~~l--~~~--~v~giDls~~~~~----~~~~d-~-~~l-p~~~~sfD~Vi~~~~lh~~d~~~~l 186 (196)
.+|+=+|.| -|.+++.+ .+. .|+|.|.+..... .-..| . .+. -......|+|+.+--+. ....++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~--~~~~~l 81 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE--ATEEVL 81 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH--HHHHHH
Confidence 456667766 34556666 444 5677777762111 11111 0 111 12234578887765432 235666
Q ss_pred HHHHHhccCC
Q psy10644 187 KEANRILKLG 196 (196)
Q Consensus 187 ~e~~rvLkpg 196 (196)
+++...||+|
T Consensus 82 ~~l~~~l~~g 91 (279)
T COG0287 82 KELAPHLKKG 91 (279)
T ss_pred HHhcccCCCC
Confidence 6666666664
No 394
>PRK14852 hypothetical protein; Provisional
Probab=21.60 E-value=2.6e+02 Score=27.86 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=19.4
Q ss_pred CCEEEEEcCC-Cchh-Hhhc--cC-CeEEEEeCCC
Q psy10644 119 RLVIADLGCG-EAKL-AAEL--TQ-HKVHSLDLVA 148 (196)
Q Consensus 119 ~~~ILDlGCG-~G~~-a~~l--~~-~~v~giDls~ 148 (196)
..+|+=+||| .|.. +..| .| .+++-+|...
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 5689999999 5543 5555 33 2666666544
No 395
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=21.52 E-value=2e+02 Score=23.42 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEEEcCCCchhHhhc--cCCeEEEEeCCC
Q psy10644 102 NPVDIIIKSIQERESKGRLVIADLGCGEAKLAAEL--TQHKVHSLDLVA 148 (196)
Q Consensus 102 ~~~~~~~~~l~~~~~~~~~~ILDlGCG~G~~a~~l--~~~~v~giDls~ 148 (196)
.|+..+...|.. ....+..|||-=+|+|..+... .+..++|+++.+
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~ 254 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINP 254 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCH
Confidence 345555555554 4456889999999988775555 688999999998
No 396
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=21.31 E-value=1.4e+02 Score=26.37 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred CEEEEEcCCCchh--Hhhc--cCCeEEEEeCCCC
Q psy10644 120 LVIADLGCGEAKL--AAEL--TQHKVHSLDLVAL 149 (196)
Q Consensus 120 ~~ILDlGCG~G~~--a~~l--~~~~v~giDls~~ 149 (196)
.+|.=||.|.-.. +..| .+.+|+++|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4577788885433 4444 5789999999983
No 397
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=21.17 E-value=2.3e+02 Score=26.41 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCchhHhhc------c--CCeEEEEeCCC--------------CCceEEEecCCCCC-----CCCCceeeE
Q psy10644 119 RLVIADLGCGEAKLAAEL------T--QHKVHSLDLVA--------------LNERVTSCDMTRTP-----LKPYSVDVA 171 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~--~~~v~giDls~--------------~~~~~~~~d~~~lp-----~~~~sfD~V 171 (196)
.++||=.| |+|.++..+ . +.+|+++|... .++.++.+|+.+.. +....+|+|
T Consensus 6 ~~~VLVTG-atGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 6 PKNILITG-AAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 46788888 678776666 2 46899998531 25678888886532 223568998
Q ss_pred eecccc
Q psy10644 172 VFCLSL 177 (196)
Q Consensus 172 i~~~~l 177 (196)
+-+.+.
T Consensus 85 iHlAa~ 90 (668)
T PLN02260 85 MHFAAQ 90 (668)
T ss_pred EECCCc
Confidence 877765
No 398
>PRK06179 short chain dehydrogenase; Provisional
Probab=21.17 E-value=2.5e+02 Score=22.26 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCC------CCceEEEecCCCCC-----C-----CCCceeeEeeccc
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVA------LNERVTSCDMTRTP-----L-----KPYSVDVAVFCLS 176 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~------~~~~~~~~d~~~lp-----~-----~~~sfD~Vi~~~~ 176 (196)
+.+||=.||. |.++..+ .+++|+.++.++ .++.++.+|+.+.. + ..+.+|+++.+..
T Consensus 4 ~~~vlVtGas-g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag 82 (270)
T PRK06179 4 SKVALVTGAS-SGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAG 82 (270)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 3468888854 5454444 577899988764 35678888885421 1 1246899988877
Q ss_pred c
Q psy10644 177 L 177 (196)
Q Consensus 177 l 177 (196)
.
T Consensus 83 ~ 83 (270)
T PRK06179 83 V 83 (270)
T ss_pred C
Confidence 6
No 399
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.77 E-value=1.1e+02 Score=28.63 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=35.8
Q ss_pred CEEEEEcCCCc-h-hHhhc--cCCeEEEEeCCC--------CCceEEEecCCCCC----CCCCceeeEeecc
Q psy10644 120 LVIADLGCGEA-K-LAAEL--TQHKVHSLDLVA--------LNERVTSCDMTRTP----LKPYSVDVAVFCL 175 (196)
Q Consensus 120 ~~ILDlGCG~G-~-~a~~l--~~~~v~giDls~--------~~~~~~~~d~~~lp----~~~~sfD~Vi~~~ 175 (196)
.+|+=+|||.= . +++.| .+..++.+|.++ .+..++.+|..+.. ..-+..|+|+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence 46777777742 2 24444 466899999998 35678889986532 1224567766553
No 400
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=20.75 E-value=2.1e+02 Score=23.62 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCchhHhhc------cCCeEEEEeCCC----------------CCceEEEecCCCCC-CC--CCceeeEee
Q psy10644 119 RLVIADLGCGEAKLAAEL------TQHKVHSLDLVA----------------LNERVTSCDMTRTP-LK--PYSVDVAVF 173 (196)
Q Consensus 119 ~~~ILDlGCG~G~~a~~l------~~~~v~giDls~----------------~~~~~~~~d~~~lp-~~--~~sfD~Vi~ 173 (196)
+.+||=.| |+|.++..+ .+++|++++.++ .++.++.+|+.+.. +. -..+|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 56788888 566665554 467887765443 13567778876532 11 124788887
Q ss_pred cccc
Q psy10644 174 CLSL 177 (196)
Q Consensus 174 ~~~l 177 (196)
+.+.
T Consensus 84 ~A~~ 87 (325)
T PLN02989 84 TASP 87 (325)
T ss_pred eCCC
Confidence 7764
No 401
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=20.50 E-value=1.4e+02 Score=20.80 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=31.9
Q ss_pred cCCeEEEEeCCC--------CCceEEEecCCCC-------C-CCCCceeeEeecccccccCHHHHHHHHHHhccCC
Q psy10644 137 TQHKVHSLDLVA--------LNERVTSCDMTRT-------P-LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196 (196)
Q Consensus 137 ~~~~v~giDls~--------~~~~~~~~d~~~l-------p-~~~~sfD~Vi~~~~lh~~d~~~~l~e~~rvLkpg 196 (196)
.+++|+++|.++ .....+. |..+. . .+...+|+|+-+-. -...+.++..+|+++
T Consensus 13 ~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~~ 82 (130)
T PF00107_consen 13 MGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----SGDTLQEAIKLLRPG 82 (130)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----SHHHHHHHHHHEEEE
T ss_pred cCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----cHHHHHHHHHHhccC
Confidence 468999999888 1222221 11111 1 22357999887765 256777777777764
No 402
>KOG2912|consensus
Probab=20.27 E-value=2.7e+02 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=18.6
Q ss_pred EEEEcCCCchhHhhc----cCCeEEEEeCCC
Q psy10644 122 IADLGCGEAKLAAEL----TQHKVHSLDLVA 148 (196)
Q Consensus 122 ILDlGCG~G~~a~~l----~~~~v~giDls~ 148 (196)
-+|||.|.-.+-..+ .++...++|+..
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd 136 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDD 136 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccc
Confidence 379988876554433 456788888776
No 403
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=20.18 E-value=1e+02 Score=26.62 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=15.7
Q ss_pred EEecCCCCCCCCCceeeEeecc
Q psy10644 154 TSCDMTRTPLKPYSVDVAVFCL 175 (196)
Q Consensus 154 ~~~d~~~lp~~~~sfD~Vi~~~ 175 (196)
..+++|.-.+-++.+|+|+|--
T Consensus 209 F~GnvEg~di~~G~~DVvV~DG 230 (338)
T COG0416 209 FIGNVEGRDILDGTVDVVVTDG 230 (338)
T ss_pred eeeeccccccccCCCCEEEeCC
Confidence 3466766666689999988743
Done!