RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10644
(196 letters)
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 171 bits (434), Expect = 3e-54
Identities = 74/147 (50%), Positives = 102/147 (69%), Gaps = 3/147 (2%)
Query: 50 LLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIK 109
+ +L ARFRYLNEQLY+ S ++ F ED E+F YH GF+ QV +WP+ PVD I +
Sbjct: 1 MAQRLDGARFRYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIAR 60
Query: 110 SIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLKPYSVD 169
+ R+ LV+AD GCG+ +LA+ + ++ VH DL +L+ RVT CDM + PL+ SVD
Sbjct: 61 DL--RQRPASLVVADFGCGDCRLASSI-RNPVHCFDLASLDPRVTVCDMAQVPLEDESVD 117
Query: 170 VAVFCLSLMGTDLAACIKEANRILKLG 196
VAVFCLSLMGT++ ++EANR+LK G
Sbjct: 118 VAVFCLSLMGTNIRDFLEEANRVLKPG 144
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 51.3 bits (123), Expect = 2e-08
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 20/146 (13%)
Query: 64 EQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIA 123
E + + + D + ++ +A+ + + + D I + + +
Sbjct: 3 EPIMRNPEDALLDSWHQN---AQAWIDAVRHGAIESRRQVTDQAI--LLAILGRQPERVL 57
Query: 124 DLGCGEAKLAAELTQ--HKVHSLDL------------VALNERVTSCDMT-RTPLKPYSV 168
DLGCGE L L + +D + +
Sbjct: 58 DLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117
Query: 169 DVAVFCLSLMGTDLAACIKEANRILK 194
D+ +L+ D+ + +L
Sbjct: 118 DLICANFALLHQDIIELLSAMRTLLV 143
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 50.0 bits (120), Expect = 4e-08
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 107 IIKSIQERESKGRLVIADLGCGEAKLAAELTQH--KVHSLD-----LVALNERVTS--CD 157
+ +I E + VI D GCG L + K++ +D L + E+ S
Sbjct: 9 YLPNIFEGKKG---VIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITL 65
Query: 158 MTRTPLKPYSVDVAVFCLSLMGT-DLAACIKEANRILK 194
+ SVD +F S D I E RILK
Sbjct: 66 SDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILK 103
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 48.7 bits (116), Expect = 2e-07
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 17/112 (15%)
Query: 97 TQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVH------SLDLVAL- 149
I V+ II + KG ++ AD+G G + L + S+ +
Sbjct: 18 PDIRI--VNAIINLLNLP--KGSVI-ADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQA 72
Query: 150 ----NERVTSCDMTRTPLKPYSVDVAVFCLSLMG-TDLAACIKEANRILKLG 196
+ L SVD + L++ + L +E RI++ G
Sbjct: 73 VVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDG 124
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 47.9 bits (114), Expect = 4e-07
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 122 IADLGCGEAKLAAELTQH---KVHSLDL------------VALNERVTSCDMTRTPLKPY 166
I DLGCG +H V LDL D+ + L
Sbjct: 47 IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQD 106
Query: 167 SVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
S D+A L+L D+A + ++ L G
Sbjct: 107 SFDLAYSSLALHYVEDVARLFRTVHQALSPG 137
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 46.7 bits (111), Expect = 6e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDL----VAL------NERVTSCDMTRTPLKPYSVD 169
I D GCG+ ++ L++ H V DL + R D++ + D
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFD 109
Query: 170 VAVFCLSLMGT----DLAACIKEANRILK 194
+ V ++MG + +R L
Sbjct: 110 LIVSAGNVMGFLAEDGREPALANIHRALG 138
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 46.1 bits (109), Expect = 2e-06
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 122 IADLGCGEAKLAAELTQH---KVHSLDL------------VALNERVTSCDMTRTPLKPY 166
+ DLGCG +H KV +DL + + ++P
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPD 107
Query: 167 SVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
+ +V + L+L K+ LK
Sbjct: 108 AYNVVLSSLALHYIASFDDICKKVYINLKSS 138
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 46.0 bits (109), Expect = 2e-06
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 40/149 (26%)
Query: 69 SKSEESKDFFTE---------DRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGR 119
S +F+ + ++ YH + ++ NP ++
Sbjct: 12 HMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVL------------ 59
Query: 120 LVIADLGCGEAKLAAELTQ--HKVHSLDLVA---------LNERVTSCDMTRTPLKPYSV 168
DLG G K + L + +V +D + V P +
Sbjct: 60 ----DLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAF 115
Query: 169 DVAVFCLSLM---GTDLAACIKEANRILK 194
+ AV L + + E R+L
Sbjct: 116 E-AVLALGDVLSYVENKDKAFSEIRRVLV 143
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 45.3 bits (107), Expect = 3e-06
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 121 VIADLGCGEAKLAAELTQ--HKVHSLDLVA--------------LNERVTSCDMTRTPLK 164
V +LG G ++A L ++ +LD A +V D PL
Sbjct: 42 VFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLP 101
Query: 165 PYSVDVAVFCLSLMG-TDLAACIKEANRILKLG 196
SV + D + EA R+LK G
Sbjct: 102 DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 4e-06
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 28/143 (19%)
Query: 18 SNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQ-------LYTSK 70
S + +I+ + L LL+K + +++ E L +
Sbjct: 47 SKEEIDHIIMS---KDAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 71 SEESKDFFTEDRESFEAYHEG-------FKK-QVTQWPINPVDIIIKSIQE-RESKGRLV 121
E + + + + F K V++ + P + +++ E R +K L+
Sbjct: 99 KTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLI 155
Query: 122 IADLGCGEAKLAAE-LTQHKVHS 143
LG G+ +A + +KV
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQC 178
Score = 29.8 bits (66), Expect = 0.57
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 36 EKY--YNSKHTPLREKLLNKLKSARF-RYLNEQLYTSKSEESKD-----FFTEDRESF-E 86
+ Y Y + P E+L+N + F + E L SK D ED F E
Sbjct: 528 KFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSK---YTDLLRIALMAEDEAIFEE 582
Query: 87 AYHEGFKKQV 96
A+ KQV
Sbjct: 583 AH-----KQV 587
Score = 29.4 bits (65), Expect = 0.83
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 23/139 (16%)
Query: 37 KYYN-SKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDF--FTED----RESFEAYH 89
K+ N K T + E LN L+ A +R +++ F
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYR----KMF-------DRLSVFPPSAHIPTILLSLIW 396
Query: 90 EGFKKQVTQWPINPVDIIIKSIQERESK-GRLVIADLGCGEAKLAAELTQ-HKVHSLDLV 147
K +N + S+ E++ K + I + H+ +D
Sbjct: 397 FDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS-IVDHY 453
Query: 148 ALNERVTSCDMTRTPLKPY 166
+ + S D+ L Y
Sbjct: 454 NIPKTFDSDDLIPPYLDQY 472
Score = 28.3 bits (62), Expect = 2.3
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 24/135 (17%)
Query: 33 HKK--EKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHE 90
H+ + Y K + + L + ++ L + E F R F +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFR- 501
Query: 91 GF-----KKQVTQW--PINPVDIII------KSIQERESKGRLVIADLGCGEAKLAAELT 137
F + T W + ++ + I + + K ++ + K+ L
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 138 QHKVHSLDLV--ALN 150
K DL+ AL
Sbjct: 561 CSK--YTDLLRIALM 573
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 43.6 bits (103), Expect = 7e-06
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDL----VAL-NERVTSC-----DMTRTPLKPYSVD 169
I D+G G + L H++ L+ V L + S +T P
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWA 104
Query: 170 VAVFCLSLM---GTDLAACIKEANRILKLG 196
+ SL+ +L + ++ G
Sbjct: 105 GLLAWYSLIHMGPGELPDALVALRMAVEDG 134
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 44.1 bits (104), Expect = 8e-06
Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 26/154 (16%)
Query: 57 ARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERES 116
A+ Y+N L + + S+D + E +A Q + + + ++ER
Sbjct: 30 AKEGYVN--LLPVQHKRSRDP-GDSAEMMQARRAFLDAGHYQPLRDAI---VAQLRERLD 83
Query: 117 KGRLVIADLGCGE----AKLAAELTQHKVHSLDL--------VALNERVTSC--DMTRTP 162
+ D+GCGE A L + LD+ +VT C R P
Sbjct: 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 143
Query: 163 LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
S+D + + +E R++K G
Sbjct: 144 FSDTSMDAIIRIYAP------CKAEELARVVKPG 171
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 44.1 bits (104), Expect = 8e-06
Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 22/140 (15%)
Query: 72 EESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAK 131
E ++ + D + E +++ ++ W II ++ K V+ D+GCG+
Sbjct: 14 ESAEKKW--DSSA-EFWNQNSQEM---WDSGSRSTIIPFFEQYVKKEAEVL-DVGCGDGY 66
Query: 132 LAAELTQ--HKVHSLDLV----------ALNERVT--SCDMTRTPLKPYSVDVAVFCLSL 177
+L++ +K +D+ ++ D++ P + + + SL
Sbjct: 67 GTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126
Query: 178 M-GTDLAACIKEANRILKLG 196
+ + E R+LK
Sbjct: 127 EWTEEPLRALNEIKRVLKSD 146
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 43.7 bits (103), Expect = 9e-06
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 83 ESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HK 140
+ + + +Q + ++ + + + K V+ DL CG + L +
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVL-DLACGVGGFSFLLEDYGFE 62
Query: 141 VHSLDL------VA--------LNERVTSCDMTRTPLKPYSVDVAVFCLSLM---GTDLA 183
V +D+ A N D + + + D +F S++ +L
Sbjct: 63 VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELN 122
Query: 184 ACIKEANRILK 194
KE R+LK
Sbjct: 123 QVFKEVRRVLK 133
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.4 bits (100), Expect = 2e-05
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 121 VIADLGCGEAKLAAELTQH-----KVHSLD-----LVALNERVTS----------CDMTR 160
+ D+G G L++ KV+++D + E+V + +
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99
Query: 161 TPLKPYSVDVA--VFCLSLMGTDLAACIKEANRILKLG 196
PL +VD F + ++ ++E R+ K
Sbjct: 100 IPLPDNTVDFIFMAFTFHEL-SEPLKFLEELKRVAKPF 136
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 42.5 bits (100), Expect = 3e-05
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 124 DLGCGEAKLAAELTQHKVHSLDL------VA----LNERVTSCDMTRTPLKPYSVDVAV- 172
++G G L + ++ V P S DV +
Sbjct: 42 EVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101
Query: 173 -FCLSLMGTDLAACIKEANRILKLG 196
L + D+ + EA R+L+ G
Sbjct: 102 FTTLEFV-EDVERVLLEARRVLRPG 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 59/188 (31%)
Query: 13 HSTSTSNSNVPNILATSSGGHKKEK-----YYNSKHTPLREKLLNKLKSARFRYLNE--- 64
H+ +L + K K Y ++ + K SA FR + E
Sbjct: 102 HAL------AAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKSNSALFRAVGEGNA 154
Query: 65 QLYT-----SKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGR 119
QL ++ D+F E R+ ++ YH + V +IK E
Sbjct: 155 QLVAIFGGQGNTD---DYFEELRDLYQTYH----------VL--VGDLIKFSAET----- 194
Query: 120 LVIADLGCGEAKLAAELTQHKVHSLDLVA-LNERVTSCDMTRTPLKPYSVDVAVFCLS-- 176
+++L + + + L+++ L TP K Y + + + S
Sbjct: 195 --LSEL----IRTTLDAEKVFTQGLNILEWLENPSN------TPDKDYLLSIPI---SCP 239
Query: 177 LMG-TDLA 183
L+G LA
Sbjct: 240 LIGVIQLA 247
Score = 31.9 bits (72), Expect = 0.15
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 26/82 (31%)
Query: 101 INP-----------VDIIIKSIQERESKGRLV-IADLGC--------GEAK----LAAEL 136
INP + +++ + +R G LV I + G+ + + L
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKR--TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 137 TQHKVHSLDLVALNERVTSCDM 158
K+ +D++ L + ++ ++
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEV 1891
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 41.8 bits (98), Expect = 4e-05
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 21/142 (14%)
Query: 71 SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEA 130
E F E +++++ +G Q + +++ +K + + G G
Sbjct: 2 GTEFNGLFDEWAHTYDSFVQGEDIQYKEV----FAHYEDILEDVVNKSFGNVLEFGVGTG 57
Query: 131 KLAAELTQ--HKVHSLDL-----------VALNERVTSCDMTRTPLKPYSVDVAVFCLSL 177
L +L V+ ++ + +T D + P S+D V +
Sbjct: 58 NLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAF 116
Query: 178 M---GTDLAACIKEANRILKLG 196
+ I + +++L G
Sbjct: 117 HHLTDDEKNVAIAKYSQLLNKG 138
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 40.6 bits (95), Expect = 1e-04
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 34/151 (22%)
Query: 71 SEESKDFFTEDRESFEAYHEGFKKQ------VTQWPINPVDIIIKSIQERESKGRLVIAD 124
S + D Y + K+Q T+ ++ ++ + IAD
Sbjct: 2 SNNNTSIHDFDFSFICNYFKLLKRQGPGSPEATRKAVSFINEL---------TDDAKIAD 52
Query: 125 LGCG---EAKLAAELTQHKVHSLDLVA--------------LNERVT--SCDMTRTPLKP 165
+GCG + A+ + ++ +DL +RV + M P +
Sbjct: 53 IGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112
Query: 166 YSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
+D+ ++ + E ++ LK G
Sbjct: 113 EELDLIWSEGAIYNIGFERGMNEWSKYLKKG 143
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 40.2 bits (94), Expect = 1e-04
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 108 IKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDL------VAL--NERVTSCDMT 159
+++++ +GR V ++G G + A L ++ +A V
Sbjct: 39 LQAVKCLLPEGRGV--EIGVGTGRFAVPL--KIKIGVEPSERMAEIARKRGVFVLKGTAE 94
Query: 160 RTPLKPYSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
PLK S D A+ ++ D +KEA RILK G
Sbjct: 95 NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKG 132
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 39.9 bits (93), Expect = 2e-04
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 19/138 (13%)
Query: 73 ESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKL 132
S + A + + + ++ ++ +G + +L G
Sbjct: 3 TSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGD--VLELASGTGYW 60
Query: 133 AAELTQ--HKVHSLDL----VAL-------NERVTSCDMTRTPLKPYSVDVAVFCLSLM- 178
L+ +V +LD +A N D+ D F L
Sbjct: 61 TRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLAH 119
Query: 179 --GTDLAACIKEANRILK 194
A + +
Sbjct: 120 VPDDRFEAFWESVRSAVA 137
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 39.9 bits (93), Expect = 2e-04
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 37/154 (24%)
Query: 68 TSKSEESKDFFTEDRESFEAYHEGFKKQ------VTQWPINPVDIIIKSIQERESKGRLV 121
+++++ DF + + ++Q VT ++ +D + + +
Sbjct: 2 SNENKTIHDF---ELNLICDFFSNMERQGPGSPEVTLKALSFIDNL---------TEKSL 49
Query: 122 IADLGCG---EAKLAAELTQHKVHSLDLVA--------------LNERVT--SCDMTRTP 162
IAD+GCG + + A +V LD ++ L RVT M P
Sbjct: 50 IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109
Query: 163 LKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
+ +D+ ++ + E + LK G
Sbjct: 110 FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKG 143
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 39.8 bits (93), Expect = 2e-04
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 25/145 (17%)
Query: 68 TSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGC 127
++ + D+ E E ++ H+G K + + ++ K ++ D+ C
Sbjct: 5 SATAGPQADYSGEIAELYDLVHQGKGKDYHRE----AADLAALVRRHSPKAASLL-DVAC 59
Query: 128 GEAKLAAELTQ--HKVHSLDL----------VALNERVTSCDMTRTPLKPYSVDVAVFCL 175
G L V L+L + + DM L AV C+
Sbjct: 60 GTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFS-AVTCM 117
Query: 176 --SLM----GTDLAACIKEANRILK 194
S+ +L A ++ +
Sbjct: 118 FSSIGHLAGQAELDAALERFAAHVL 142
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 39.5 bits (92), Expect = 2e-04
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 20/93 (21%)
Query: 124 DLGCGEAKLAAEL---TQHKVHSLDLVA--------------LNERVTSCDMTRTPLKPY 166
D G G + +K + +++ ++ D+ + P K
Sbjct: 29 DCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDE 88
Query: 167 SVDVAVFCLSLM---GTDLAACIKEANRILKLG 196
S+ ++ D+ I E R+LK G
Sbjct: 89 SMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG 121
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 38.9 bits (91), Expect = 4e-04
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 20/103 (19%)
Query: 111 IQERESKGRLVIADLGCGEAKLAAELTQ-HKVHSLDL------VA--------LNERVTS 155
+ E+ G+ + D+GCG L ++V +DL +A +
Sbjct: 27 VLEQVEPGKRIA-DIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWV 85
Query: 156 CDMTRTPLKPYSVDVAVFCLSLM----GTDLAACIKEANRILK 194
DM L + + C SL D+ A R+L
Sbjct: 86 QDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 38.9 bits (90), Expect = 5e-04
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 26/153 (16%)
Query: 68 TSKSEESKDFFTEDRESFEAYHEGFKKQVTQ--WPINPVDIIIKSIQERES--KGRLVIA 123
K K +++E Y T W N ++ + E L +
Sbjct: 2 MEKLSAIKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLI 61
Query: 124 DLGCGEAKLAAELTQH--KVHSLDL------------VALNERVTSCDMTR----TPLKP 165
D CG L+Q +V LD+ A N D +
Sbjct: 62 DFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHS 121
Query: 166 YSVDVAVFCLSLM----GTDLAACIKEANRILK 194
D ++ + + +L
Sbjct: 122 EIGDANIYMRTGFHHIPVEKRELLGQSLRILLG 154
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 38.7 bits (90), Expect = 5e-04
Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 75 KDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAA 134
+ +T E ++ + ++V +D + + +E + + DL CG
Sbjct: 2 YELYTLLAEYYDTIYRRRIERVKAE----IDFVEEIFKEDAKREVRRVLDLACGTGIPTL 57
Query: 135 ELTQ--HKVHSLDL------VA--------LNERVTSCDMTRTPLKPYSVDVAVFCLS-- 176
EL + ++V LDL VA L D+ D AV
Sbjct: 58 ELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFD-AVTMFFST 115
Query: 177 ---LMGTDLAACIKEANRILKLG 196
DL + LK G
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPG 138
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 38.2 bits (89), Expect = 8e-04
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 21/109 (19%)
Query: 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HKVHSLDL----------VALNE 151
I ++ R + ++ D+ CG T+ L+L +
Sbjct: 27 ASDIADLVRSRTPEASSLL-DVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85
Query: 152 RVTSCDMTRTPLKPYSVDVAVFCL--SLM----GTDLAACIKEANRILK 194
+ DM L AV + S+ +L A + L+
Sbjct: 86 TLHQGDMRDFRL-GRKFS-AVVSMFSSVGYLKTTEELGAAVASFAEHLE 132
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 37.5 bits (87), Expect = 0.001
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 20/126 (15%)
Query: 88 YHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HKVHSLD 145
+ E F + + P D ++ + +G+ I L GE + A L ++V ++D
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIP-QGK--ILCLAEGEGRNACFLASLGYEVTAVD 58
Query: 146 LVA--------------LNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTDL-AACIKEAN 190
+ + ++ + + + V + + L +
Sbjct: 59 QSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY 118
Query: 191 RILKLG 196
+ LK G
Sbjct: 119 QGLKPG 124
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 37.7 bits (87), Expect = 0.001
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 28/118 (23%)
Query: 107 IIKSIQERESKGRLVIADLGCGEAKLAAELTQH-----KVHSLDLVA------------- 148
K I E R ++ D+GCG ++ Q ++ DL A
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84
Query: 149 ------LNERVTSCD----MTRTPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
++ +++S D + + +D+ D + A L+
Sbjct: 85 PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKD 142
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 37.0 bits (85), Expect = 0.002
Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 27/146 (18%)
Query: 72 EESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDII--IKSIQERESKGRLVIADLGCGE 129
++ +++ + G ++ VDI I G D G G
Sbjct: 51 GKALEYWRTVPATVSGVLGGMDH------VHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104
Query: 130 AKLAAELTQHKVHSLDLVALNE----------------RVTSCDMTRTPLKPYSVDVAVF 173
++ L + DL+ + + M L P + D+ V
Sbjct: 105 GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVI 164
Query: 174 CLSLM---GTDLAACIKEANRILKLG 196
+ + D K + L
Sbjct: 165 QWTAIYLTDADFVKFFKHCQQALTPN 190
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 35.9 bits (83), Expect = 0.004
Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 23/114 (20%)
Query: 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQ--HKVHSLDL------VA------- 148
D II+ E + DL CG L L ++DL A
Sbjct: 24 SDFIIEKCVENNLVFDDYL-DLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ 82
Query: 149 -LNERVTSCDMTRTPLKPYSVDVAVFCLSLMG-----TDLAACIKEANRILKLG 196
L R+ D++ + D+ CL DL K + LK G
Sbjct: 83 GLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 35.5 bits (82), Expect = 0.006
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDLVA----------LNERVTSCDMTRTPLKPYSVD 169
I DLGCG +L ++ Q +V D A + D + +D
Sbjct: 61 ILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLD 119
Query: 170 VAVFCLSLM-GTDLAACIKEANRILKLG 196
L + A I ++ LK G
Sbjct: 120 AVFSNAMLHWVKEPEAAIASIHQALKSG 147
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 34.8 bits (80), Expect = 0.009
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDLVA---------LNERVTSCDMTRTPLKPYSVDV 170
I +LGCG A + V + D L V + + + D
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDA-IDAYDA 105
Query: 171 AVFCLSLMGT---DLAACIKEANRILKLG 196
L+ +LA +K R LK G
Sbjct: 106 VWAHACLLHVPRDELADVLKLIWRALKPG 134
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 34.8 bits (80), Expect = 0.010
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 22/92 (23%)
Query: 124 DLGCG---EAKLAAELTQHKVHSLDL------VA--------LNERVT--SCDMTRTPLK 164
D+G G + A+ + + +LD +A LN+R+ D+ P++
Sbjct: 49 DIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108
Query: 165 PYSVDVAV--FCLSLMGTDLAACIKEANRILK 194
D+ V + D+A +E RILK
Sbjct: 109 DNYADLIVSRGSVFFW-EDVATAFREIYRILK 139
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 33.1 bits (75), Expect = 0.035
Identities = 19/135 (14%), Positives = 33/135 (24%), Gaps = 19/135 (14%)
Query: 78 FTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLV----IADLGCGEAKLA 133
RES++ W + + L + + GCG A
Sbjct: 4 MNHSRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDA 63
Query: 134 AELTQH--KVHSLDLV----------ALNERVTSCDMTRTPLKPYSVDVAVFCLSLMGTD 181
A + + D A + V + + L P A F L +
Sbjct: 64 ARFGPQAARWAAYDFSPELLKLARANAPHADVYEWN-GKGEL-PAG-LGAPFGLIVSRRG 120
Query: 182 LAACIKEANRILKLG 196
+ I +
Sbjct: 121 PTSVILRLPELAAPD 135
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 33.0 bits (75), Expect = 0.043
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 27/98 (27%)
Query: 122 IADLGCGEAKLAAELTQ--HKVHSLDL------------------VALNERVTSCDMTRT 161
+ +L G +L +V +L+L V + DM+
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145
Query: 162 PLKPYSVDVAVFCLS-----LMGTDLAACIKEANRILK 194
L V S L D L+
Sbjct: 146 AL-DKRFG-TVVISSGSINELDEADRRGLYASVREHLE 181
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 32.6 bits (74), Expect = 0.056
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 21/95 (22%)
Query: 122 IADLGCGEAKLAAELTQ-----HKVHSLDL------VA--------LNERVTSCDMTRTP 162
I D GCG L L K +D A + D T
Sbjct: 26 IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85
Query: 163 LKPYSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
L D+A+ L+ T +++ +K G
Sbjct: 86 L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG 119
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 32.5 bits (74), Expect = 0.069
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 28/111 (25%)
Query: 114 RESKGRLV----------IADLGCGEAKLAAELTQH--KVHSLDLVA------------- 148
S G ++ + D+G G A + + + +D
Sbjct: 7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK 66
Query: 149 --LNERVTSCDMTRTPLKPYSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
N R P S D+ + +D+ ++E R+LK
Sbjct: 67 GVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD 117
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 32.0 bits (72), Expect = 0.081
Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 21/99 (21%)
Query: 117 KGRLVIADLGCGEAKLAAELTQH---KVHSLDLVA---------------LNERVTSCDM 158
G D G G ++ L +V +D+ C +
Sbjct: 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL 137
Query: 159 TRTPLKPYSVDVAVFCLSLM---GTDLAACIKEANRILK 194
+P S DV + LA ++ L+
Sbjct: 138 QDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR 176
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 31.9 bits (72), Expect = 0.10
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 77 FFTEDRESFEAY-HEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAE 135
++D E + + ++ + + + S + + DLGCG+ + +
Sbjct: 80 ALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK--VLDLGCGQGRNSLY 137
Query: 136 LTQ--HKVHSLDL--VALN 150
L+ + V S D ++
Sbjct: 138 LSLLGYDVTSWDHNENSIA 156
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.1 bits (70), Expect = 0.18
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 40/160 (25%)
Query: 71 SEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEA 130
+E D + + + + ++ +++ + D+ CG
Sbjct: 15 AEGIPDQYADGE--AARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCH---RVLDVACGTG 69
Query: 131 KLAAELTQ--HKVHSLDL------VA----------------LNERVTSCDMTRTPLKPY 166
+ L + V S+D A + E + +
Sbjct: 70 VDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 129
Query: 167 SVDVAVFCL--SLM--------GTDLAACIKEANRILKLG 196
D AV CL S ++ +K +++ G
Sbjct: 130 GFD-AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 30.0 bits (67), Expect = 0.37
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 26/101 (25%)
Query: 121 VIADLGCGEAKLAAELTQ-----HKVHSLDLVA--------------LNERVT--SCDMT 159
V+A + CG L ++ +D L ++T D
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180
Query: 160 RTPLKPYSVDVAV-FCLSLMGTD---LAACIKEANRILKLG 196
+ D+ L++ D + + + LK G
Sbjct: 181 KLDT-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPG 220
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 29.8 bits (67), Expect = 0.44
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 124 DLGCGEAKLAAELTQ--HKVHSLDL----------VALNERVTS-----CDMTRTPLKPY 166
DLGCG + + L + V + D + E + + D+
Sbjct: 38 DLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DR 96
Query: 167 SVDVAVFCLSLMG---TDLAACIKEANRILKLG 196
D + + LM + I R K G
Sbjct: 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 129
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 29.9 bits (67), Expect = 0.51
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 22/91 (24%)
Query: 121 VIADLGCGEAKLAAELTQH----KVHSLDLVA--------------LNERVTS--CDMTR 160
IAD+G A L ++ + ++V L E++ +
Sbjct: 24 RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLA 83
Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANR 191
K ++D V MG L I E
Sbjct: 84 VIEKKDAIDTIVIA--GMGGTLIRTILEEGA 112
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 29.2 bits (65), Expect = 0.59
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 108 IKSIQERESKGRLVIADLGCGEAKLAAELTQ---HKVHSLDL--VALNE----------- 151
+++ E E + I LGCG + L+ EL V S+D V +
Sbjct: 32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQL 91
Query: 152 RVTSCDMTRTPLKPYSVDVAV 172
R + D+ + S DV +
Sbjct: 92 RWETMDVRKLDFPSASFDVVL 112
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 29.4 bits (66), Expect = 0.68
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 18/91 (19%)
Query: 124 DLGCGEAKLAAELTQH--KVHSLDLVA---------------LNERVTSCDMTRTPLKPY 166
D+ G +A KV + DL D + P
Sbjct: 43 DVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102
Query: 167 SVDVAVFCLSLMG-TDLAACIKEANRILKLG 196
+ ++ + A+ + EA R+LK G
Sbjct: 103 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKG 133
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 29.2 bits (65), Expect = 0.73
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 69 SKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCG 128
EE F + E + + +++++T W +I + + S GCG
Sbjct: 18 PTPEEVATFLHKTVEE-GGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGRALVPGCG 76
Query: 129 EAKLAAELTQ--HKVHSLDLVA 148
+ V LD+
Sbjct: 77 GGHDVVAMASPERFVVGLDISE 98
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 29.0 bits (65), Expect = 0.75
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 107 IIKSIQERESKGRLVIADLGCGEAKLAAELTQH----KVHSLDL-----------VALNE 151
+ SI +++ ++ DLG G L+A L + +D+ N
Sbjct: 34 VSVSIASVDTENPDIL-DLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL 92
Query: 152 RVT--SCDMTRTPLKPYSVDVAVFCLSL---MGTDLAACIKEANRILKLG 196
+V D ++ + D+ V LS+ D K + ILK
Sbjct: 93 KVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKES 141
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 29.0 bits (65), Expect = 0.80
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 18/89 (20%)
Query: 122 IADLGCGEAKLAAELTQH----KVHSLDL----------VALNERVTSCDMTRTPLKPYS 167
DLGCG LT + +D N D+
Sbjct: 37 GYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQ-K 95
Query: 168 VDVAVFC-LSLM-GTDLAACIKEANRILK 194
D+ ++ D A + + L+
Sbjct: 96 ADL-LYANAVFQWVPDHLAVLSQLMDQLE 123
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 28.3 bits (63), Expect = 1.4
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 121 VIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLK 164
+ D+G A L L Q + + ++ P +
Sbjct: 24 RLLDVGSDHAYLPIFLLQMGY--------CDFAIAGEVVNGPYQ 59
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 28.3 bits (63), Expect = 1.6
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 22/91 (24%)
Query: 121 VIADLGCGEAKLAAELTQH----KVHSLDLVA--------------LNERVT--SCDMTR 160
++ D+G A L EL + + ++V L E++ +
Sbjct: 18 ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA 77
Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANR 191
+ V V MG L A I E
Sbjct: 78 AFEETDQVSVITIA--GMGGRLIARILEEGL 106
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 28.0 bits (62), Expect = 1.6
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 100 PINP--VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCD 157
+N ++ ++ ++ ++S R VI DLGCG+ L L + E++T D
Sbjct: 12 SLNQQRMNGVVAAL--KQSNARRVI-DLGCGQGNLLKILLKDSF--------FEQITGVD 60
Query: 158 MTRTPLK 164
++ L+
Sbjct: 61 VSYRSLE 67
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 27.6 bits (61), Expect = 2.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 114 RESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTRTPLK 164
+ + VI DLGCGE L + L + K E++T D++ + L+
Sbjct: 26 KSVNAKKVI-DLGCGEGNLLSLLLKDKS--------FEQITGVDVSYSVLE 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 27.7 bits (60), Expect = 2.9
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 7 MGSETAHSTSTSNSNVPNILATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQL 66
MGS + H S+ VP +S ++ S T LR + +S LN+ +
Sbjct: 1 MGS-SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMI 59
Query: 67 YTS-----------KSEESKDFFTEDRESFEAYHEGFKKQVTQW 99
K S + + E+F+ H+ F W
Sbjct: 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIW 103
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein
backbone fold, lipid binding protein; NMR {Rhizobium
leguminosarum} SCOP: i.11.1.1
Length = 92
Score = 25.8 bits (56), Expect = 4.2
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 107 IIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLV 147
II +I + + GE ELT + SL L
Sbjct: 9 IISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLA 49
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 26.3 bits (59), Expect = 5.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 104 VDIIIKSIQERESKGRLVIADLGCG----EAKLAAELTQHKVHSLDL 146
V+ I+ ++ S R + D+G G +A V ++DL
Sbjct: 18 VEEAIRFLKRMPSGTR--VIDVGTGSGCIAVSIALACPGVSVTAVDL 62
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 26.4 bits (58), Expect = 6.4
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 122 IADLGCGEAKLAAELTQH-KVHSLDLVALNER-VTSCDMTRTPLKPYSVDVAVFCLSLMG 179
I DLGCG + L + V + V S + P ++D F ++
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 180 TDLA 183
+ +
Sbjct: 286 SGVE 289
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY,
structural genomics, structural genomics consortium,
SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A*
3c6m_A*
Length = 364
Score = 26.0 bits (57), Expect = 8.6
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 120 LVIADLGCGEAKLAAELTQHKVHSLDLVALNERVT 154
L++ G G+ + E+ + K + +V +++ V
Sbjct: 193 LIL---GGGDGGILCEIVKLKPKMVTMVEIDQMVI 224
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 8.8
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 163 LKPYSVDVAVFCLSLMGT 180
LK Y+ D A L++ T
Sbjct: 29 LKLYADDSAP-ALAIKAT 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.364
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,724,307
Number of extensions: 148794
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 69
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)