RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10644
(196 letters)
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 30.2 bits (67), Expect = 0.12
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 21/117 (17%)
Query: 99 WPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDM 158
+ + V ++ ++ + I D GCG L L ++ T
Sbjct: 10 YNDDYVSFLVNTVWKITKPVH--IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE 67
Query: 159 TRTPLKPY------------------SVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
R + D+A+ L+ T +++ +K G
Sbjct: 68 ARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG 124
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 29.9 bits (66), Expect = 0.14
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 21/95 (22%)
Query: 122 IADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTR--------------------T 161
I DLG G ++ + + + ++ T+ R
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 162 PLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
+ V V + G A + + LK G
Sbjct: 97 ANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPG 130
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 28.8 bits (63), Expect = 0.36
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 18/93 (19%)
Query: 122 IADLGCGEAKLAAELTQH--KVHSLDLVALNERV---------------TSCDMTRTPLK 164
+ D+G G A + + + +D V P
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79
Query: 165 PYSVDVAVFCLSLM-GTDLAACIKEANRILKLG 196
S D+ + +D+ ++E R+LK
Sbjct: 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQD 112
>d1p35a_ b.28.1.1 (A:) Baculovirus p35 protein {AcMNPV (Autographa
californica nuclear polyhedrosis virus) [TaxId: 46015]}
Length = 299
Score = 28.4 bits (63), Expect = 0.55
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 27 ATSSGGHKKEKYYNSKHTPLREKLLNKLKSARFRYLNEQLYTSKSE 72
G H KY+ +H + + + LKS + L YT K
Sbjct: 83 DQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKS 128
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 27.7 bits (60), Expect = 0.83
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 104 VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVH 142
D II+ E + DL CG L L +
Sbjct: 24 SDFIIEKCVENNLVFDDYL-DLACGTGNLTENLCPKFKN 61
>d1zy9a1 b.30.5.11 (A:1-177) Alpha-galactosidase GalA N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 177
Score = 27.1 bits (60), Expect = 1.2
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 44 TPLREKLLNKLKSARFRYLNEQLYTS-KSEESKDFFTEDRESFEAYHEGFKKQVTQW-PI 101
+ + + L L+S F ++Y S+ + FF + AY E F + + P+
Sbjct: 90 SVVPDVLERNLQSDYFVAEEGKVYGFLSSKIAHPFFAVEDGELVAYLEYFDVEFDDFVPL 149
Query: 102 NPVDII 107
P+ ++
Sbjct: 150 EPLVVL 155
>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase
HisC {Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 27.4 bits (59), Expect = 1.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 101 INPVDIIIKSIQERESKGRLVIADLGCGE 129
+NP+D+I K E++ R L E
Sbjct: 1 MNPLDLIAKRAYPYETEKRDKT-YLALNE 28
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 26.8 bits (58), Expect = 1.7
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 57 ARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERES 116
A+ Y+N L + + S+D + E +A D I+ ++ER
Sbjct: 29 AKEGYVN--LLPVQHKRSRDP-GDSAEMMQARRAFLD---AGHYQPLRDAIVAQLRERLD 82
Query: 117 KGRLVIADLGCGE----AKLAAELTQHKVHSLD 145
+ D+GCGE A L + LD
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLD 115
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 26.5 bits (57), Expect = 2.1
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 108 IKS--IQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNE 151
IK+ I+ +G V+ DLGCG+ + + + V + E
Sbjct: 13 IKACLIRLYTKRGDSVL-DLGCGKGGDLLKYERAGIGEYYGVDIAE 57
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.1 bits (56), Expect = 3.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 122 IADLGCGEAKLAAELTQH--KVHSLDL 146
+ D+ G +A KV + DL
Sbjct: 19 VLDVATGGGHVANAFAPFVKKVVAFDL 45
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa
(LmjF30.0810) {Leishmania major [TaxId: 5664]}
Length = 254
Score = 25.7 bits (55), Expect = 3.3
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 72 EESKDFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKS--IQERESKGRLVIADLGCGE 129
++ +++ + G ++ VDI I G D G G
Sbjct: 51 GKALEYWRTVPATVSGVLGGMDH------VHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104
Query: 130 AKLAAELTQHKVHSLDLVALNERVTSCDM 158
++ L + DL+ + +
Sbjct: 105 GRITKNLLTKLYATTDLLEPVKHMLEEAK 133
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase
PdxA {Escherichia coli [TaxId: 562]}
Length = 329
Score = 25.6 bits (55), Expect = 3.9
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 101 INPVDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTSCDMTR 160
I P D++++ Q +V AD + A + + + T+ +T
Sbjct: 17 IGP-DLVVQLAQREWPVELVVCADATLLTNRAAMLGLPLTLRPYSPNSPAQPQTAGTLTL 75
Query: 161 TPLKPYSVDVAVFCLSLMGTDLAACIKEANRILKLG 196
P+ + A G + + A G
Sbjct: 76 LPVALRAPVTAGQLAVENGHYVVETLARACDGCLNG 111
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.2 bits (55), Expect = 6.2
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 41 SKHTPLREKLLNKLKSARFRYLNEQLYTSKSEESKDFFTEDRESFEAYHEGFKKQVTQWP 100
SK + K+ L S + + Y E F+ Q ++
Sbjct: 65 SKVDNQIGASIGKII----EILQG--LNETSTNAYRTLPINNMPVPEYLENFQWQTRKFK 118
Query: 101 INP-----VDIIIKSIQERESKGRLVIADLGCGEAKLAAELTQHKVHSLDLVALNERVTS 155
++ + +I + ++ R A+ + LAA + K L + +L++ V
Sbjct: 119 LDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAA-AERKKTGDLSVRSLHDIVKP 177
Query: 156 CDM 158
D
Sbjct: 178 EDF 180
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 24.7 bits (52), Expect = 8.5
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 76 DFFTEDRESFEAYHEGFKKQVTQWPINPVDIIIKSIQERESKGRLVIADLGCGEAKLAAE 135
+ +T E ++ + + + + I+ V+ I K +RE + + DL CG E
Sbjct: 3 ELYTLLAEYYDTIYRR-RIERVKAEIDFVEEIFKEDAKREVR---RVLDLACGTGIPTLE 58
Query: 136 LTQHKVH 142
L +
Sbjct: 59 LAERGYE 65
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 24.3 bits (51), Expect = 8.6
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 104 VDIIIKSIQERESKGRLVIA---DLGCGEAKLAAELTQH 139
+D + K+I ++ GRLV+ G+ LA +L+Q
Sbjct: 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase
{Salmonella typhi [TaxId: 90370]}
Length = 252
Score = 24.5 bits (53), Expect = 9.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 174 CLSLMGTDLAACIKEANRILKLG 196
+SLMG D+ + EA +
Sbjct: 19 IVSLMGRDINSVKAEALAYREAT 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.364
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,265
Number of extensions: 27081
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 23
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)