BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10647
         (92 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7VRH0|CLPX_BLOFL ATP-dependent Clp protease ATP-binding subunit ClpX OS=Blochmannia
           floridanus GN=clpX PE=3 SV=1
          Length = 426

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 10  ILFDNTNLVYFPGQYLSG--RVLIELKDDTPALGFHRSKNNMTRKLIKFVIL 59
           I  D TN+++  G   SG  +++ E   D  A+GFH S  +  R+ +K+ +L
Sbjct: 246 IQVDTTNILFICGGSFSGLNKIVEERISDNHAIGFHASLKDNNRENLKYSLL 297


>sp|Q6CTM7|PALF_KLULA pH-response regulator protein palF/RIM8 OS=Kluyveromyces lactis
          (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
          NRRL Y-1140 / WM37) GN=RIM8 PE=3 SV=1
          Length = 572

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 47 NNMTRKLIKFVILFDNTNLVYFPGQYLSGRVLIELKDDTP 86
          + M   +++F I+ D+ + V+ P + +SG V + L+ D P
Sbjct: 42 SGMKSYILEFEIVLDDVHRVWKPNETISGTVKLRLRKDVP 81



 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 1  MTRKLIKFVILFDNTNLVYFPGQYLSGRVLIELKDDTP 38
          M   +++F I+ D+ + V+ P + +SG V + L+ D P
Sbjct: 44 MKSYILEFEIVLDDVHRVWKPNETISGTVKLRLRKDVP 81


>sp|Q7NVH4|G6PI2_CHRVO Glucose-6-phosphate isomerase 2 OS=Chromobacterium violaceum
           (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
           NCIMB 9131 / NCTC 9757) GN=pgi2 PE=3 SV=1
          Length = 550

 Score = 29.6 bits (65), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 12  FDNTNLVYFPGQYLSGRVLIELKDDTPALGFHRSKNNMTR 51
           FD   + Y  G+ L+ R+L EL  DT ALG   S N + R
Sbjct: 505 FDQWGVEY--GKQLARRILPELSGDTGALGHDSSTNGLIR 542


>sp|Q5UQT6|YL344_MIMIV Uncharacterized WD repeat-containing protein L344 OS=Acanthamoeba
          polyphaga mimivirus GN=MIMI_L344 PE=4 SV=1
          Length = 526

 Score = 29.3 bits (64), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 27 GRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNL-------VYFPGQYLSGRVLI 79
            + IEL DD   + FH ++ N+      F IL    NL       +  P  +++  +++
Sbjct: 4  NSIEIELSDDDRVISFHANRQNLINISEYFKILLTKFNLHDKQQIPIKVPNAFVAYDIIV 63

Query: 80 ELKDDTPA 87
          EL ++T +
Sbjct: 64 ELTENTES 71


>sp|Q9UT03|SLS1_SCHPO Protein sls1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=sls1 PE=3 SV=1
          Length = 677

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 25  LSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVYFPGQYLSGRVLIELKDD 84
           LSG+  I++   T A G + S + + RKL+ FV+LF+NT+      + L+ +    L D 
Sbjct: 266 LSGKAQIKI---TTAFG-NCSFDEIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDF 321

Query: 85  T 85
           T
Sbjct: 322 T 322


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.146    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,988,142
Number of Sequences: 539616
Number of extensions: 1418487
Number of successful extensions: 3457
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3451
Number of HSP's gapped (non-prelim): 13
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)