Query         psy10647
Match_columns 92
No_of_seqs    21 out of 23
Neff          1.8 
Searched_HMMs 29240
Date          Fri Aug 16 23:52:49 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy10647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10647hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2r51_A Vacuolar protein sortin  94.7   0.017   6E-07   44.8   2.9   27   17-43     42-71  (340)
  2 2r51_A Vacuolar protein sortin  93.2    0.11 3.6E-06   40.4   4.6   19   64-82     41-59  (340)
  3 2fau_A Vacuolar protein sortin  90.8    0.13 4.6E-06   39.9   2.7   19   17-35     42-60  (341)
  4 2fau_A Vacuolar protein sortin  73.8     1.7 5.9E-05   33.7   2.3   20   64-83     41-60  (341)
  5 1v76_A RNAse P protein PH1771P  69.4     4.2 0.00014   26.5   3.1   50   25-76     35-84  (96)
  6 2zae_A Ribonuclease P protein   64.5     6.2 0.00021   27.3   3.3   50   25-76     66-115 (127)
  7 1oqk_A Conserved protein MTH11  56.9     6.3 0.00021   25.6   2.1   52   25-76     34-85  (97)
  8 1ts9_A Ribonuclease P protein   50.8      15 0.00052   24.2   3.3   50   25-76     33-82  (102)
  9 3t5g_B Retinal ROD rhodopsin-s  50.1     3.1 0.00011   30.2  -0.2   16   19-34    119-134 (152)
 10 3ne5_B Cation efflux system pr  38.6      31  0.0011   25.6   3.7   30    5-35    293-322 (413)
 11 2f1m_A Acriflavine resistance   35.8      21 0.00071   24.3   2.2   31    6-36    231-261 (277)
 12 2p9r_A Alpha-2-M, alpha-2-macr  34.9      52  0.0018   19.5   3.7   26    8-35      4-29  (102)
 13 3fpp_A Macrolide-specific effl  32.6      26 0.00089   24.4   2.3   30    7-36    246-275 (341)
 14 4a1r_A LIP; membrane protein,   30.3      89   0.003   21.2   4.7   47   13-60     66-112 (149)
 15 1vf7_A Multidrug resistance pr  26.8      23 0.00079   25.6   1.2   30    6-35    239-268 (369)
 16 3lnn_A Membrane fusion protein  24.6      36  0.0012   23.9   1.9   28    5-32    256-283 (359)
 17 3hrz_A Cobra venom factor; ser  20.9      68  0.0023   25.7   3.0   34    8-41    321-354 (627)
 18 3jqq_A Ferredoxin NADP reducta  20.2      33  0.0011   24.4   0.9   46   18-74      9-55  (316)

No 1  
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=94.75  E-value=0.017  Score=44.78  Aligned_cols=27  Identities=26%  Similarity=0.602  Sum_probs=22.3

Q ss_pred             eeEecCcccceeEEEEec---CCcceeeee
Q psy10647         17 LVYFPGQYLSGRVLIELK---DDTPALGFH   43 (92)
Q Consensus        17 llYFPGQ~lSGRVLle~q---e~t~~lglh   43 (92)
                      .+|+||+.+||+|.|+++   ...++.|+.
T Consensus        42 pvY~~GE~VsG~V~I~~~~~~k~l~h~GIk   71 (340)
T 2r51_A           42 FLFYDGETVSGKVSLSLKNPNKRLEHQGIK   71 (340)
T ss_dssp             EEEETBCCEEEEEEEEESSTTSCEEESCEE
T ss_pred             CcCCCCCEEEEEEEEEECCCCCeeEEEEEE
Confidence            589999999999999999   556556554


No 2  
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=93.16  E-value=0.11  Score=40.38  Aligned_cols=19  Identities=32%  Similarity=0.756  Sum_probs=17.8

Q ss_pred             eeeEecCcccceeEEEEec
Q psy10647         64 NLVYFPGQYLSGRVLIELK   82 (92)
Q Consensus        64 ~llyfpgq~lsgrvl~el~   82 (92)
                      ..+|+||+.+||+|.|++.
T Consensus        41 ~pvY~~GE~VsG~V~I~~~   59 (340)
T 2r51_A           41 YFLFYDGETVSGKVSLSLK   59 (340)
T ss_dssp             EEEEETBCCEEEEEEEEES
T ss_pred             cCcCCCCCEEEEEEEEEEC
Confidence            4689999999999999999


No 3  
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=90.83  E-value=0.13  Score=39.92  Aligned_cols=19  Identities=26%  Similarity=0.707  Sum_probs=17.7

Q ss_pred             eeEecCcccceeEEEEecC
Q psy10647         17 LVYFPGQYLSGRVLIELKD   35 (92)
Q Consensus        17 llYFPGQ~lSGRVLle~qe   35 (92)
                      -+|+||+.+||+|.+++.+
T Consensus        42 ~vY~~GE~VsG~V~I~~~~   60 (341)
T 2fau_A           42 YLFYDGESVSGKVNLAFKQ   60 (341)
T ss_dssp             EEECTTCCEEEEEEEEESS
T ss_pred             CcCCCCCEEEEEEEEEECC
Confidence            3899999999999999986


No 4  
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=73.76  E-value=1.7  Score=33.69  Aligned_cols=20  Identities=25%  Similarity=0.692  Sum_probs=18.0

Q ss_pred             eeeEecCcccceeEEEEecC
Q psy10647         64 NLVYFPGQYLSGRVLIELKD   83 (92)
Q Consensus        64 ~llyfpgq~lsgrvl~el~~   83 (92)
                      .-+|+||+-+||+|.|++.+
T Consensus        41 ~~vY~~GE~VsG~V~I~~~~   60 (341)
T 2fau_A           41 HYLFYDGESVSGKVNLAFKQ   60 (341)
T ss_dssp             EEEECTTCCEEEEEEEEESS
T ss_pred             cCcCCCCCEEEEEEEEEECC
Confidence            35899999999999999985


No 5  
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=69.41  E-value=4.2  Score=26.50  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=37.4

Q ss_pred             cceeEEEEecCCcceeeeeecccchhhhheeEEEEEeCCeeeEecCccccee
Q psy10647         25 LSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVYFPGQYLSGR   76 (92)
Q Consensus        25 lSGRVLle~qe~t~~lglh~~~~~m~rkl~kf~ilfdnt~llyfpgq~lsgr   76 (92)
                      ++|.|+-||+..-.+..  ..-.-.|++-.-|.+-+|+......-|.-|.+|
T Consensus        35 i~GiVV~ET~ntf~I~t--~~~~~VPK~~~vF~f~~~~~~~v~i~G~~l~~R   84 (96)
T 1v76_A           35 IEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFEADDGTKIKIPGERLVGR   84 (96)
T ss_dssp             CEEEEEEECSSEEEEES--SSEEEEESTTEEEEEECTTSCEEEEEGGGGCSC
T ss_pred             cEEEEEEeccceEEEEc--CCEEEEECCCEEEEEEECCCcEEEEECceeccC
Confidence            79999999999888877  233346678888888887555666777777665


No 6  
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=64.50  E-value=6.2  Score=27.26  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=37.2

Q ss_pred             cceeEEEEecCCcceeeeeecccchhhhheeEEEEEeCCeeeEecCccccee
Q psy10647         25 LSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVYFPGQYLSGR   76 (92)
Q Consensus        25 lSGRVLle~qe~t~~lglh~~~~~m~rkl~kf~ilfdnt~llyfpgq~lsgr   76 (92)
                      ++|.|+-||+.--.+.+  ..---.|++-.-|.+-+|+...+..-|.-|.+|
T Consensus        66 i~GiVV~ETknTf~I~t--~~~k~VPK~~~vF~f~l~dg~~v~I~G~~l~~R  115 (127)
T 2zae_A           66 IEGYVIDETRNMLVIAG--DRIWKVPKDVSIFEFEADDGTKIKIPGERLVGR  115 (127)
T ss_dssp             CEEEEEEEETTEEEEES--SSEEEEESTTEEEEEECTTSCEEEEEGGGGCSC
T ss_pred             cEEEEEEcccceEEEEc--CCEEEEECCCeEEEEEeCCCeEEEEECceeccC
Confidence            89999999999888877  233345677788888787555666777777665


No 7  
>1oqk_A Conserved protein MTH11; OB fold, archaeal RNAse P protein subunit, hydrolase; NMR {Methanothermobacterthermautotrophicus} SCOP: b.137.1.1
Probab=56.88  E-value=6.3  Score=25.63  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=34.3

Q ss_pred             cceeEEEEecCCcceeeeeecccchhhhheeEEEEEeCCeeeEecCccccee
Q psy10647         25 LSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVYFPGQYLSGR   76 (92)
Q Consensus        25 lSGRVLle~qe~t~~lglh~~~~~m~rkl~kf~ilfdnt~llyfpgq~lsgr   76 (92)
                      ++|.|+-||+..-.+..--..-.-.|++-.-|.+-+++...+..-|.-|.+|
T Consensus        34 i~GiVV~ET~ntf~I~t~~~~~k~VPK~~~vF~f~~~dg~~~~i~G~~l~~R   85 (97)
T 1oqk_A           34 ISGRVVDETRNTLRIEMDDGREITVPKGIAVFHFRTPQGELVEIDGRALVAR   85 (97)
T ss_dssp             CEEECCEEETTEEEEEETTTEEEEEECTTCEEEEEETTTEEEEECSSSCCCC
T ss_pred             cEEEEEEcccceEEEEcCCCcEEEEECCCEEEEEEECCCcEEEEECceeccC
Confidence            8999999998766655322112235677777887777555666677766665


No 8  
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=50.78  E-value=15  Score=24.15  Aligned_cols=50  Identities=12%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             cceeEEEEecCCcceeeeeecccchhhhheeEEEEEeCCeeeEecCccccee
Q psy10647         25 LSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVYFPGQYLSGR   76 (92)
Q Consensus        25 lSGRVLle~qe~t~~lglh~~~~~m~rkl~kf~ilfdnt~llyfpgq~lsgr   76 (92)
                      ++|.|+-||+..-.+.. -..-.-.|++-.-|.+-+|+ ..+..-|.-|.+|
T Consensus        33 i~GiVV~ETkntf~I~t-~~~~k~VPK~~~vF~f~l~~-~~~~I~G~~l~~R   82 (102)
T 1ts9_A           33 IKGEVVDETQNTLKIMT-EKGLKVVAKRGRTFRVWYKG-KIMRIKGDLINFR   82 (102)
T ss_dssp             CEEEEEEECSSEEEEEE-SSSEEEEECTTCEEEEEETT-EEEEEEGGGTCSC
T ss_pred             cEEEEEEeccceEEEEe-CCcEEEEECCCEEEEEEECC-EEEEEECceeccC
Confidence            79999999998888877 21223456777888877774 3344556555554


No 9  
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=50.11  E-value=3.1  Score=30.18  Aligned_cols=16  Identities=44%  Similarity=0.764  Sum_probs=14.2

Q ss_pred             EecCcccceeEEEEec
Q psy10647         19 YFPGQYLSGRVLIELK   34 (92)
Q Consensus        19 YFPGQ~lSGRVLle~q   34 (92)
                      -+|-+.+||.|++||+
T Consensus       119 mlpa~~lsGnv~IeT~  134 (152)
T 3t5g_B          119 MMPASVLTGNVIIETK  134 (152)
T ss_dssp             SCCHHHHTTTEEEEEE
T ss_pred             cCCHhHcCCcEEEEEE
Confidence            4688999999999996


No 10 
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=38.58  E-value=31  Score=25.62  Aligned_cols=30  Identities=13%  Similarity=0.148  Sum_probs=24.5

Q ss_pred             ceEEEEEeeCCceeEecCcccceeEEEEecC
Q psy10647          5 LIKFVILFDNTNLVYFPGQYLSGRVLIELKD   35 (92)
Q Consensus         5 l~kf~IiFDn~~llYFPGQ~lSGRVLle~qe   35 (92)
                      -....|.|||++.-..||++.+.++. .-.+
T Consensus       293 t~~v~i~l~n~~~~L~pGm~v~v~i~-~~~~  322 (413)
T 3ne5_B          293 TLQLRLEVDNADEALKPGMNAWLQLN-TASE  322 (413)
T ss_dssp             EEEEEEEEECTTCCSCTTCEEEEEEE-EECC
T ss_pred             EEEEEEEEECCCCccCCCCEEEEEEe-eCCC
Confidence            45788999999998999999998887 4433


No 11 
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=35.82  E-value=21  Score=24.26  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             eEEEEEeeCCceeEecCcccceeEEEEecCC
Q psy10647          6 IKFVILFDNTNLVYFPGQYLSGRVLIELKDD   36 (92)
Q Consensus         6 ~kf~IiFDn~~llYFPGQ~lSGRVLle~qe~   36 (92)
                      ..+.|.+||++--..||++.+.++..+..++
T Consensus       231 ~~v~i~~~~~~~~l~~G~~~~v~i~~~~~~~  261 (277)
T 2f1m_A          231 ITLRAIFPNPDHTMMPGMFVRARLEEGLNPN  261 (277)
T ss_dssp             EEEEEEECCTTCCCCSSCEEEEEEC------
T ss_pred             EEEEEEecCCccccCCCCEEEEEEEecccCC
Confidence            4677888988877789988877766655444


No 12 
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=34.89  E-value=52  Score=19.54  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=19.9

Q ss_pred             EEEEeeCCceeEecCcccceeEEEEecC
Q psy10647          8 FVILFDNTNLVYFPGQYLSGRVLIELKD   35 (92)
Q Consensus         8 f~IiFDn~~llYFPGQ~lSGRVLle~qe   35 (92)
                      .-|..|++  +|-|||-+.=|+++--.+
T Consensus         4 ~fi~tDr~--iYrPGetV~~~~~~~~~~   29 (102)
T 2p9r_A            4 VFVQTDKS--IYKPGQTVKFRVVSMDEN   29 (102)
T ss_dssp             EEEEESCS--EECTTCEEEEEEEEECGG
T ss_pred             EEEECCCc--ccCCCCEEEEEEEEECCC
Confidence            34666765  899999999999986443


No 13 
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.61  E-value=26  Score=24.45  Aligned_cols=30  Identities=7%  Similarity=-0.158  Sum_probs=22.8

Q ss_pred             EEEEEeeCCceeEecCcccceeEEEEecCC
Q psy10647          7 KFVILFDNTNLVYFPGQYLSGRVLIELKDD   36 (92)
Q Consensus         7 kf~IiFDn~~llYFPGQ~lSGRVLle~qe~   36 (92)
                      ...|.+||++-...||++.+.++.++..++
T Consensus       246 ~v~i~~~~~~~~l~~G~~~~v~i~~~~~~~  275 (341)
T 3fpp_A          246 YARFEVPNPNGLLRLDMTAQVHIQLTDVKN  275 (341)
T ss_dssp             EEEEEEECSSSCCCTTCEEEEEEESCCCCS
T ss_pred             EEEEEeCCCccccCCCCEEEEEEEEccCCC
Confidence            567888999988899998877766554443


No 14 
>4a1r_A LIP; membrane protein, T6SS, beta-sandwich; 1.92A {Serratia marcescens}
Probab=30.32  E-value=89  Score=21.21  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             eCCceeEecCcccceeEEEEecCCcceeeeeecccchhhhheeEEEEE
Q psy10647         13 DNTNLVYFPGQYLSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILF   60 (92)
Q Consensus        13 Dn~~llYFPGQ~lSGRVLle~qe~t~~lglh~~~~~m~rkl~kf~ilf   60 (92)
                      +...++.-|||+ +=.+-++.++++..+|+----.+...+-.|.++=.
T Consensus        66 ~~~e~~l~PG~~-~~~l~~~~~~~aryIGVvA~yr~~~~~~Wr~v~~v  112 (149)
T 4a1r_A           66 DSDQFFLTPGQT-GKKLGGQSALDARYIGVIAEYQNLDGKTWRISLPL  112 (149)
T ss_dssp             EEEEEEECTTCC-CEEEEEECCTTCCEEEEEECCSSCTTCBCEEEEEC
T ss_pred             hceEEEECCCCc-eEEEEeccCCCCcEEEEEEEEECCCCCceEEEEec
Confidence            445677899995 23444799999998887544444444444444443


No 15 
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=26.84  E-value=23  Score=25.59  Aligned_cols=30  Identities=20%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             eEEEEEeeCCceeEecCcccceeEEEEecC
Q psy10647          6 IKFVILFDNTNLVYFPGQYLSGRVLIELKD   35 (92)
Q Consensus         6 ~kf~IiFDn~~llYFPGQ~lSGRVLle~qe   35 (92)
                      ....|.|||++--+.||++.+-++..+..+
T Consensus       239 ~~v~i~l~~~~~~L~~G~~v~v~i~~~~~~  268 (369)
T 1vf7_A          239 VTIRAVFPNPNNELLPGMFVHAQLQEGVKQ  268 (369)
T ss_dssp             EEECBEEECSSSCCCTTCEEEEEEECC---
T ss_pred             EEEEEEEeCCCCccCCCCEEEEEEecCCcC
Confidence            456788999988889999887776655433


No 16 
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=24.56  E-value=36  Score=23.89  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=23.2

Q ss_pred             ceEEEEEeeCCceeEecCcccceeEEEE
Q psy10647          5 LIKFVILFDNTNLVYFPGQYLSGRVLIE   32 (92)
Q Consensus         5 l~kf~IiFDn~~llYFPGQ~lSGRVLle   32 (92)
                      .....|.+||++--..||++.+.++..+
T Consensus       256 ~~~v~~~~~~~~~~l~~G~~~~v~i~~~  283 (359)
T 3lnn_A          256 TTKVRMVFDNPDGRLRPGMFAQATFLSQ  283 (359)
T ss_dssp             CEEEEEEEECSSCCCCTTCEEEEEEECC
T ss_pred             EEEEEEEecCCCCCcCCCCEEEEEEecC
Confidence            4577899999998899999988777655


No 17 
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=20.87  E-value=68  Score=25.70  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             EEEEeeCCceeEecCcccceeEEEEecCCcceee
Q psy10647          8 FVILFDNTNLVYFPGQYLSGRVLIELKDDTPALG   41 (92)
Q Consensus         8 f~IiFDn~~llYFPGQ~lSGRVLle~qe~t~~lg   41 (92)
                      +.|.|.++.-.|=||-+..|+|.+.-.|+.|+-+
T Consensus       321 ~~i~f~~~~~~~kpG~p~~~~v~v~~~dg~P~~~  354 (627)
T 3hrz_A          321 YQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAH  354 (627)
T ss_dssp             CEEECTTSCSEECTTSCEEEEEEEECTTSCBCTT
T ss_pred             EEEEEEeccccccCCCcEEEEEEEECCCCCcCCC
Confidence            5678889999999999999999999999998865


No 18 
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=20.17  E-value=33  Score=24.39  Aligned_cols=46  Identities=13%  Similarity=0.269  Sum_probs=24.4

Q ss_pred             eEecCcccceeEEEEecCCcceeeeeecccchhhhheeEEEEEeC-CeeeEecCcccc
Q psy10647         18 VYFPGQYLSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDN-TNLVYFPGQYLS   74 (92)
Q Consensus        18 lYFPGQ~lSGRVLle~qe~t~~lglh~~~~~m~rkl~kf~ilfdn-t~llyfpgq~ls   74 (92)
                      +|=|..+++++|+--..=..+         +-+...  +-|.||. ..+=|.|||++.
T Consensus         9 ~~~~~~p~~~~v~~~~~l~~~---------~~~~~v--~~~~~~~~~~~~~~~GQ~~~   55 (316)
T 3jqq_A            9 LYTVKNPLKCKIVDKINLVRP---------NSPNEV--YHLEINHNGLFKYLEGHTCG   55 (316)
T ss_dssp             SSCSSSCEEEEEEEEEECSCT---------TCSCCE--EEEEEECTTCCCCCTTCEEE
T ss_pred             eecCCCCEEEEEEeeEEccCC---------CCCCce--EEEEEeCCCCcceecCcEeE
Confidence            466777778877532111111         112222  2344443 368899999873


Done!