RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10647
(92 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.006
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 23/46 (50%)
Query: 46 KNNMTRKLIKFVILFDNTNL-VYFPGQYLSGRVLIELKDDTPALAL 90
K + +KL +L +Y D PALA+
Sbjct: 19 KQAL-KKL--------QASLKLYAD-------------DSAPALAI 42
Score = 26.1 bits (56), Expect = 1.8
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 22/44 (50%)
Query: 3 RKLIKFVILFDNTNL-VYFPGQYLSGRVLIELKDDTPALGFHRS 45
+KL +L +Y D PAL +
Sbjct: 23 KKL--------QASLKLYAD-------------DSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.75
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 31/93 (33%)
Query: 17 LVYFPGQYLSGR----VLIEL--KDDTPALG-------FHRSKNNMTRKLIKFV--ILF- 60
L F YL G + +L ++DT + + ++ R K LF
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 61 ---DNTNLVY--FPGQ-----YLSGRVLIELKD 83
+ + F GQ Y EL+D
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFE-----ELRD 175
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 24.9 bits (55), Expect = 4.0
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 11 LFDNTNLVYFPGQYLSGRVLIELKDDTPAL 40
+F N N PG + ++ A+
Sbjct: 244 VFPNPNNELLPGMF--VHAQLQEGVKQKAI 271
Score = 24.9 bits (55), Expect = 4.0
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 59 LFDNTNLVYFPGQYLSGRVLIELKDDTPAL 88
+F N N PG + ++ A+
Sbjct: 244 VFPNPNNELLPGMF--VHAQLQEGVKQKAI 271
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 25.2 bits (56), Expect = 4.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 22 GQYLSGRVLIEL 33
GQYLSG+ I +
Sbjct: 607 GQYLSGKKFIPI 618
Score = 25.2 bits (56), Expect = 4.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 70 GQYLSGRVLIEL 81
GQYLSG+ I +
Sbjct: 607 GQYLSGKKFIPI 618
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 24.8 bits (55), Expect = 4.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 22 GQYLSGRVLIEL 33
G YLSGR IE+
Sbjct: 624 GAYLSGRESIEI 635
Score = 24.8 bits (55), Expect = 4.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 70 GQYLSGRVLIEL 81
G YLSGR IE+
Sbjct: 624 GAYLSGRESIEI 635
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 24.8 bits (55), Expect = 5.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 22 GQYLSGRVLIEL 33
GQYLSG+ I +
Sbjct: 305 GQYLSGKKFIPI 316
Score = 24.8 bits (55), Expect = 5.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 70 GQYLSGRVLIEL 81
GQYLSG+ I +
Sbjct: 305 GQYLSGKKFIPI 316
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 24.7 bits (52), Expect = 6.0
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 8 FVILFDNTNLVYFPGQYLSGRVLIELKDDTPALG 41
+ + T L PG +V ++ D G
Sbjct: 352 YKLNLVATPLFLKPGIPYPIKVQVKDSLDQLVGG 385
Score = 24.3 bits (51), Expect = 7.3
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 56 FVILFDNTNLVYFPGQYLSGRVLIELKDDTPA 87
+ + T L PG +V ++ D
Sbjct: 352 YKLNLVATPLFLKPGIPYPIKVQVKDSLDQLV 383
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 24.7 bits (55), Expect = 6.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 22 GQYLSGRVLIEL 33
G+YLSG+ I +
Sbjct: 568 GEYLSGKRKITV 579
Score = 24.7 bits (55), Expect = 6.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 70 GQYLSGRVLIEL 81
G+YLSG+ I +
Sbjct: 568 GEYLSGKRKITV 579
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 6.6
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 40 LGFHRSKNNMTRKLIKFVILFDN 62
+G H ++ F ++F +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLD 499
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 24.7 bits (52), Expect = 6.8
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 12 FDNTNLVYFPGQYLSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVYFPGQ 71
+ G+ + + L+ + + R+ + + I F T + P
Sbjct: 310 VQPSRADALVGKSIYVSATVILQSGSDMVEAERTGIPIVTSPYQ--IHFTKTPKFFKPAM 367
Query: 72 YLSGRVLIELKDDTPA 87
V + D +PA
Sbjct: 368 PFDLMVYVTNPDGSPA 383
>2ecu_A Flavin reductase (HPAC) of 4-hydroxyphenylacetate monooxygnease;
flavin diffusible, two-component monooxyge
oxidoreductase; HET: 1PG 12P; 1.30A {Thermus
thermophilus} PDB: 2ecr_A* 2ed4_A*
Length = 149
Score = 24.0 bits (53), Expect = 6.9
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 27 GRVL-IELKDDTPALGFHRSK 46
G V +EL + P L + +
Sbjct: 121 GLVEEVELGEGGPPLVYFQRG 141
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A
{Mycobacterium goodii}
Length = 157
Score = 24.0 bits (53), Expect = 8.0
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 27 GRVL-IELKDDTPALGFHRSK 46
RV I + + P + FHRS
Sbjct: 131 LRVSDIVINEAVPPIVFHRSA 151
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 24.3 bits (51), Expect = 8.4
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 7 KFVILFDNTNLVYFPGQYLSGRVLIELKDDTPALGFHRSKNNMTRKLI---KFVILFDNT 63
K + D + L G L G + I + I F T
Sbjct: 291 KATLKRDTFRSRFPNLNELVGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKT 350
Query: 64 NLVYFPGQYLSGRVLIELKDDTPA 87
+ PG V + D +PA
Sbjct: 351 PKYFKPGMPYELTVYVTNPDGSPA 374
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 23.9 bits (52), Expect = 9.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 19 YFPGQYLSGRVLIE 32
Y PGQYL + E
Sbjct: 183 YRPGQYLGVWLKPE 196
Score = 23.9 bits (52), Expect = 9.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 67 YFPGQYLSGRVLIE 80
Y PGQYL + E
Sbjct: 183 YRPGQYLGVWLKPE 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.146 0.420
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,433,956
Number of extensions: 73621
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 34
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)