RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10647
         (92 letters)



>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
          [TaxId: 93466]}
          Length = 671

 Score = 26.2 bits (56), Expect = 0.69
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 8  FVILFDNTNLVYFPGQYLSGRVLIELKDDTPALGFHRSKNNMTRKLIKFVILFDNTNLVY 67
          + ILF         G+Y  G++L+   D +      ++ N       K V+      +V 
Sbjct: 17 YHILFGELR----DGEYTEGKILVGYNDRSEVDKIVKAVN------GKVVLELPQIKVVS 66

Query: 68 FPGQYLSGRVLIELKDDTPALAL 90
               L+G  + +  D   ALAL
Sbjct: 67 I---KLNGMTVKQAYDKIKALAL 86



 Score = 25.4 bits (54), Expect = 1.4
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 56 FVILFDNTNLVYFPGQYLSGRVLIELKDDTPALALLQ 92
          + ILF         G+Y  G++L+   D +    +++
Sbjct: 17 YHILFGELR----DGEYTEGKILVGYNDRSEVDKIVK 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.146    0.420 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,240
Number of extensions: 13758
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)