BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10650
(446 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 260 LTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 319
L PF E+E K + SS +LC + GY G+ A +Y SK + KA
Sbjct: 211 LVASPF-VELEGKSYIQ--SSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKDSKDKEKA 267
Query: 320 ALTETIQYLARNKVLESETRELASL 344
T + Q+ +K++++ +E + L
Sbjct: 268 LYTISGQWSGSSKIIKANKKEESRL 292
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 187 IMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY 246
+++P L++E +++ PF E+E K + SS +LC + GY G+ A +Y
Sbjct: 199 LVTPPPLHIEGILVASPF-VELEGKSYIQ--SSTGLLCVIEFSGRGYFSGKKNSFKARIY 255
Query: 247 NRSKITVKSTKAALT 261
SK + KA T
Sbjct: 256 KDSKDSKDKEKALYT 270
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 260 LTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 319
L PF E+E K + SS +LC + GY G+ A +Y SK + KA
Sbjct: 209 LVASPF-VELEGKSYIQ--SSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKDSKDKEKA 265
Query: 320 ALTETIQYLARNKVLESETRELASL 344
T + Q+ +K++++ +E + L
Sbjct: 266 LYTISGQWSGSSKIIKANKKEESRL 290
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 187 IMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY 246
+++P L++E +++ PF E+E K + SS +LC + GY G+ A +Y
Sbjct: 197 LVTPPPLHIEGILVASPF-VELEGKSYIQ--SSTGLLCVIEFSGRGYFSGKKNSFKARIY 253
Query: 247 NRSKITVKSTKAALT 261
SK + KA T
Sbjct: 254 KDSKDSKDKEKALYT 268
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 217 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 262
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 323
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 217 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 262
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 323
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 217 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 262
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 323
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 217 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 262
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTE 323
+S P+ SLD+ Y GE I +N V N + TVK K ++ +
Sbjct: 192 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ 237
>pdb|2OGE|A Chain A, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
pdb|2OGE|B Chain B, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
pdb|2OGE|C Chain C, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
pdb|2OGE|D Chain D, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
Length = 399
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 206 CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 258
CE +H +GV +SG +++L G PG+ +I+ + Y S + V +T A
Sbjct: 76 CETDHAVGV---NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGA 125
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 267 CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 319
CE +H +GV +SG +++L G PG+ +I+ + Y S + V +T A
Sbjct: 76 CETDHAVGV---NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGA 125
>pdb|2OGA|A Chain A, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
pdb|2OGA|B Chain B, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
pdb|2OGA|C Chain C, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
pdb|2OGA|D Chain D, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
Length = 399
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 206 CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 258
CE +H +GV +SG +++L G PG+ +I+ + Y S + V +T A
Sbjct: 76 CETDHAVGV---NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGA 125
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 267 CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 319
CE +H +GV +SG +++L G PG+ +I+ + Y S + V +T A
Sbjct: 76 CETDHAVGV---NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGA 125
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 365 PPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQL 401
P +PP+NL + K+ D+F +D SI + +L+L
Sbjct: 148 PEIPPSNLINAGIYKLNSDIFTYLDKISISERGELEL 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,313,880
Number of Sequences: 62578
Number of extensions: 431636
Number of successful extensions: 824
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 17
length of query: 446
length of database: 14,973,337
effective HSP length: 102
effective length of query: 344
effective length of database: 8,590,381
effective search space: 2955091064
effective search space used: 2955091064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)