Query psy10650
Match_columns 446
No_of_seqs 237 out of 998
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:56:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3780|consensus 100.0 4E-29 8.6E-34 260.6 29.9 219 87-410 101-321 (427)
2 PF02752 Arrestin_C: Arrestin 99.8 3.9E-20 8.5E-25 161.6 15.0 130 280-409 2-135 (136)
3 KOG3865|consensus 99.6 2.2E-14 4.8E-19 139.5 18.0 121 120-263 107-236 (402)
4 PF00339 Arrestin_N: Arrestin 99.1 9.5E-11 2.1E-15 104.0 5.2 63 114-176 87-149 (149)
5 PF02752 Arrestin_C: Arrestin 98.6 4.5E-08 9.7E-13 85.2 5.9 50 218-267 1-51 (136)
6 KOG3780|consensus 98.5 6.1E-07 1.3E-11 93.9 11.2 69 265-333 170-238 (427)
7 PF00339 Arrestin_N: Arrestin 98.3 1.2E-06 2.6E-11 77.6 5.6 40 85-130 87-126 (149)
8 PF03643 Vps26: Vacuolar prote 98.1 0.00084 1.8E-08 66.7 21.2 177 116-390 92-272 (275)
9 PF08737 Rgp1: Rgp1; InterPro 97.9 0.0025 5.5E-08 67.0 21.5 108 278-390 299-413 (415)
10 KOG3865|consensus 97.3 0.00052 1.1E-08 68.0 6.3 125 277-407 189-347 (402)
11 PF13002 LDB19: Arrestin_N ter 96.8 0.017 3.6E-07 54.1 11.6 26 85-110 44-69 (191)
12 PF13002 LDB19: Arrestin_N ter 96.5 0.016 3.4E-07 54.3 9.2 111 115-252 45-161 (191)
13 KOG2717|consensus 96.4 0.12 2.6E-06 49.8 14.5 105 280-392 176-285 (313)
14 PF07070 Spo0M: SpoOM protein; 95.3 0.89 1.9E-05 43.8 15.6 108 278-392 8-119 (218)
15 PF03643 Vps26: Vacuolar prote 93.3 1.9 4.2E-05 43.0 13.5 138 236-409 2-147 (275)
16 PF08737 Rgp1: Rgp1; InterPro 91.5 0.56 1.2E-05 49.5 7.5 57 348-407 114-173 (415)
17 COG1470 Predicted membrane pro 88.6 16 0.00035 39.0 15.0 91 295-407 394-484 (513)
18 PF00927 Transglut_C: Transglu 85.2 10 0.00022 31.8 9.7 74 223-309 2-77 (107)
19 PF01835 A2M_N: MG2 domain; I 84.0 3.8 8.3E-05 33.6 6.5 26 224-249 2-27 (99)
20 COG3175 COX11 Cytochrome oxida 82.4 6.8 0.00015 36.5 7.9 84 234-329 90-178 (195)
21 PF10633 NPCBM_assoc: NPCBM-as 82.0 12 0.00027 29.4 8.5 65 295-370 2-66 (78)
22 PRK05089 cytochrome C oxidase 80.9 4.7 0.0001 37.9 6.4 73 234-318 91-166 (188)
23 PF07070 Spo0M: SpoOM protein; 80.9 6.1 0.00013 38.1 7.4 53 115-171 80-133 (218)
24 PF04442 CtaG_Cox11: Cytochrom 79.8 5.3 0.00011 36.3 6.2 64 234-309 64-130 (152)
25 PF01835 A2M_N: MG2 domain; I 77.7 6.5 0.00014 32.3 5.8 26 285-310 2-27 (99)
26 KOG3063|consensus 73.4 96 0.0021 30.4 14.7 36 123-158 105-140 (301)
27 COG4326 Spo0M Sporulation cont 72.8 4.8 0.0001 38.3 4.1 24 86-109 100-124 (270)
28 COG4326 Spo0M Sporulation cont 72.5 6.4 0.00014 37.5 4.8 92 278-372 28-124 (270)
29 PF00927 Transglut_C: Transglu 72.1 40 0.00088 28.0 9.4 74 285-366 3-76 (107)
30 PTZ00128 cytochrome c oxidase 71.4 11 0.00023 36.7 6.2 63 234-308 135-200 (232)
31 KOG2540|consensus 69.9 13 0.00028 35.7 6.3 87 234-332 160-251 (269)
32 PF14874 PapD-like: Flagellar- 69.5 60 0.0013 26.5 10.3 63 228-308 11-73 (102)
33 PF00207 A2M: Alpha-2-macroglo 69.3 60 0.0013 26.3 10.8 38 282-321 55-92 (92)
34 PF10633 NPCBM_assoc: NPCBM-as 61.8 37 0.00081 26.6 6.7 59 234-308 2-60 (78)
35 PF01345 DUF11: Domain of unkn 61.5 24 0.00052 27.5 5.5 41 219-259 23-63 (76)
36 PF04426 Bul1_C: Bul1 C termin 61.4 15 0.00033 36.6 5.3 39 367-407 233-271 (272)
37 PF07703 A2M_N_2: Alpha-2-macr 61.4 1E+02 0.0023 26.3 11.7 32 283-314 95-126 (136)
38 KOG3063|consensus 59.7 45 0.00098 32.6 7.9 127 234-390 7-137 (301)
39 PF07705 CARDB: CARDB; InterP 58.6 75 0.0016 25.3 8.3 81 286-392 7-87 (101)
40 TIGR01451 B_ant_repeat conserv 57.7 20 0.00044 26.4 4.2 31 289-319 3-33 (53)
41 KOG1144|consensus 57.2 6.8 0.00015 44.0 2.2 10 384-394 705-714 (1064)
42 PF06159 DUF974: Protein of un 56.8 1.1E+02 0.0023 30.0 10.4 31 234-264 11-41 (249)
43 PF01345 DUF11: Domain of unkn 55.1 41 0.00088 26.2 5.8 39 281-319 24-62 (76)
44 PF05688 DUF824: Salmonella re 55.0 19 0.0004 26.2 3.4 31 294-324 9-39 (47)
45 TIGR01451 B_ant_repeat conserv 54.2 21 0.00046 26.2 3.8 32 228-259 3-34 (53)
46 PF05688 DUF824: Salmonella re 53.9 15 0.00033 26.7 2.8 28 236-263 12-39 (47)
47 smart00809 Alpha_adaptinC2 Ada 52.4 1.3E+02 0.0028 24.6 11.9 87 219-331 4-91 (104)
48 KOG4043|consensus 50.3 11 0.00023 34.6 1.9 9 14-22 149-157 (214)
49 PF02221 E1_DerP2_DerF2: ML do 48.9 1.7E+02 0.0036 24.9 13.3 50 346-405 85-134 (134)
50 PRK05089 cytochrome C oxidase 47.4 2.5E+02 0.0054 26.5 10.9 82 291-385 87-172 (188)
51 COG3533 Uncharacterized protei 47.2 19 0.0004 38.9 3.4 59 272-332 355-414 (589)
52 KOG2812|consensus 45.5 19 0.00041 37.0 3.0 6 88-93 307-312 (426)
53 KOG2775|consensus 43.3 7.9 0.00017 39.0 -0.0 6 326-331 284-289 (397)
54 PF04744 Monooxygenase_B: Mono 42.6 83 0.0018 32.7 7.1 32 224-255 249-281 (381)
55 KOG3925|consensus 42.3 37 0.00079 35.0 4.5 14 398-411 330-343 (371)
56 KOG1144|consensus 42.2 21 0.00045 40.4 2.9 6 200-205 473-478 (1064)
57 TIGR03079 CH4_NH3mon_ox_B meth 42.2 1.1E+02 0.0024 31.8 7.9 32 223-254 267-299 (399)
58 KOG2717|consensus 40.3 3.7E+02 0.0081 26.4 11.7 118 291-410 13-147 (313)
59 PF07705 CARDB: CARDB; InterP 38.5 2E+02 0.0043 22.7 11.6 37 225-261 7-43 (101)
60 PF06030 DUF916: Bacterial pro 38.0 73 0.0016 27.7 5.2 29 294-323 23-51 (121)
61 PF04314 DUF461: Protein of un 35.9 2.3E+02 0.0049 23.9 7.9 37 278-314 73-109 (110)
62 PF00207 A2M: Alpha-2-macroglo 35.7 71 0.0015 25.9 4.6 35 219-254 53-87 (92)
63 COG3533 Uncharacterized protei 35.2 63 0.0014 35.0 5.1 55 210-266 354-409 (589)
64 smart00737 ML Domain involved 34.9 2.7E+02 0.0059 23.3 10.2 36 346-391 71-106 (118)
65 PF14181 YqfQ: YqfQ-like prote 34.8 4.9 0.00011 36.9 -2.7 6 10-15 103-108 (161)
66 PF09113 N-glycanase_C: Peptid 34.2 49 0.0011 29.7 3.6 22 228-249 84-106 (141)
67 KOG0526|consensus 33.9 13 0.00029 40.1 -0.1 6 59-64 537-542 (615)
68 PF02883 Alpha_adaptinC2: Adap 33.0 2.9E+02 0.0062 23.0 14.2 93 216-332 5-103 (115)
69 KOG3045|consensus 32.1 25 0.00054 35.0 1.5 11 378-388 291-301 (325)
70 PF07718 Coatamer_beta_C: Coat 31.5 2.3E+02 0.0049 25.5 7.3 67 219-306 55-121 (140)
71 PF04425 Bul1_N: Bul1 N termin 31.1 52 0.0011 35.1 3.7 71 83-153 251-345 (438)
72 PF00963 Cohesin: Cohesin doma 30.6 1.1E+02 0.0025 26.5 5.4 37 224-261 1-37 (141)
73 cd08544 Reeler Reeler, the N-t 29.6 75 0.0016 27.6 4.0 30 224-255 21-50 (135)
74 PF02014 Reeler: Reeler domain 29.3 83 0.0018 27.3 4.2 33 224-258 21-53 (132)
75 PF00970 FAD_binding_6: Oxidor 28.7 3E+02 0.0066 21.9 7.8 30 218-247 11-44 (99)
76 PF04314 DUF461: Protein of un 28.2 68 0.0015 27.2 3.4 37 217-253 73-109 (110)
77 COG4719 Uncharacterized protei 26.8 96 0.0021 28.2 4.1 27 231-257 65-91 (176)
78 COG3175 COX11 Cytochrome oxida 26.4 5.5E+02 0.012 24.2 9.3 84 292-386 87-177 (195)
79 COG2373 Large extracellular al 26.1 2E+02 0.0044 35.9 7.9 100 221-320 393-535 (1621)
80 PF07703 A2M_N_2: Alpha-2-macr 25.0 81 0.0018 27.0 3.4 31 221-251 94-124 (136)
81 PF08496 Peptidase_S49_N: Pept 24.6 92 0.002 28.4 3.7 9 60-68 96-104 (155)
82 PF06483 ChiC: Chitinase C; I 24.5 3.4E+02 0.0075 25.4 7.4 25 85-112 65-89 (180)
83 PF14796 AP3B1_C: Clathrin-ada 24.0 4.2E+02 0.0091 23.9 7.7 75 218-308 65-140 (145)
84 PF06030 DUF916: Bacterial pro 23.5 84 0.0018 27.3 3.1 22 233-254 23-44 (121)
85 PF09624 DUF2393: Protein of u 23.4 1.6E+02 0.0035 26.0 5.1 28 233-260 58-85 (149)
86 PF00963 Cohesin: Cohesin doma 23.0 2.1E+02 0.0046 24.8 5.7 35 286-321 2-36 (141)
87 PF13199 Glyco_hydro_66: Glyco 22.5 1.8E+02 0.0039 32.1 6.1 26 227-252 1-26 (559)
88 COG2847 Copper(I)-binding prot 21.2 1.9E+02 0.0041 26.3 5.0 39 216-254 99-137 (151)
No 1
>KOG3780|consensus
Probab=99.97 E-value=4e-29 Score=260.61 Aligned_cols=219 Identities=34% Similarity=0.617 Sum_probs=171.1
Q ss_pred ccCCeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEE
Q psy10650 87 LLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQV 166 (446)
Q Consensus 87 ~Lp~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~ 166 (446)
.|++|.|+|||.|.||.+||+||||.+ |+|||.|+++++|+|..+....+.
T Consensus 101 ~l~~G~~~~pF~~~LP~~~P~Sfeg~~-----------------------------G~irY~vk~~idr~~~~~~~~~~~ 151 (427)
T KOG3780|consen 101 VLPPGNYEFPFSFTLPLNLPPSFEGKF-----------------------------GHVRYFVKAEIDRPWKLNKKNRKP 151 (427)
T ss_pred ecCCCceEEeEeccCCCCCCCceeeCC-----------------------------ceEEEEEEEEEecCCCCCccceee
Confidence 467777777777777777777777666 567899999999999999999999
Q ss_pred EEEEeccccCCCCCccceeeeccccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEE
Q psy10650 167 FIIMSPIDLNLEPPILSVFIIMSPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY 246 (446)
Q Consensus 167 ~~V~~~~dl~~~p~~~~~~~~~~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~ 246 (446)
|+|++.+|+|.+|. ...|+.+..++.++||||..|+|.+.+.||++||+|||.|.+.++|+
T Consensus 152 ~~V~~~~~ln~~p~-------------------~~~~~~~~~~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~ 212 (427)
T KOG3780|consen 152 FTVIETVDLNSSPS-------------------LLEPIISKASKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIE 212 (427)
T ss_pred EEEecccccccCcc-------------------ccCcchhhhhheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEe
Confidence 99999999986543 34677888889999999999999999999999999999999999999
Q ss_pred cCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEE
Q psy10650 247 NRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQ 326 (446)
Q Consensus 247 N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~ 326 (446)
|.|++.++.+.+.|.|+..+.. . ..| ...
T Consensus 213 n~ss~~~~~~~~~l~q~~~~~~-------------------~------~~~---------~~~----------------- 241 (427)
T KOG3780|consen 213 NKSSRTIKKVKAKLIQKISYLA-------------------F------SYG---------EHT----------------- 241 (427)
T ss_pred cCCCCcceeeEEEEEEEEEEEe-------------------e------cCC---------ccc-----------------
Confidence 9999999888888887632211 0 000 000
Q ss_pred EEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecCC-CCCCeEEEecEEE
Q psy10650 327 YLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKS-IEKPVKLQLPIML 405 (446)
Q Consensus 327 y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~-~~~~l~v~lPIiI 405 (446)
..+......+.....+.|.++....| ...|.||..+|++...|.+|+++|.|.|.+.+.+ +..++.+++||+|
T Consensus 242 -----~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~iP~~~Ps~~~~~~~i~v~y~l~v~~~~~~~~~~~~~l~~pi~i 315 (427)
T KOG3780|consen 242 -----KTKKSEKTLIKSRGSLEVAPRSEDKF-EKELRIPPVPPSILPDTPIIRVEYELKVTLKTSSLRHSELALELPIII 315 (427)
T ss_pred -----cceeeeeEEeeeccccccCCCCcccc-ceEEEcCCCCCccCCCCceEEEEEEEEEEEecCcccccceeeeeceEE
Confidence 00111112233334567888888877 8999999988876556999999999999999875 2578999999999
Q ss_pred Eee-cC
Q psy10650 406 ATY-PF 410 (446)
Q Consensus 406 Gtv-Pl 410 (446)
|++ |+
T Consensus 316 gt~~P~ 321 (427)
T KOG3780|consen 316 GTIPPL 321 (427)
T ss_pred eccCcc
Confidence 999 53
No 2
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=99.84 E-value=3.9e-20 Score=161.60 Aligned_cols=130 Identities=34% Similarity=0.561 Sum_probs=98.5
Q ss_pred CCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccc--eeeeeEEEEeeeecCccCCCCccce
Q psy10650 280 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNK--VLESETRELASLTRGKIKPGERDDW 357 (446)
Q Consensus 280 ~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~--~~~~~~~~V~~~~~~~V~~g~~~~~ 357 (446)
+|.+++.+++++.+|.|||+|++++.|+|.|++.++.|+++|+|.++|.+++. ......+.+++.....+.++....|
T Consensus 2 ~g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 81 (136)
T PF02752_consen 2 SGKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAKSKNCGVDPGSSGSF 81 (136)
T ss_dssp TEEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEEEECCEB-B-TTEEE
T ss_pred CCEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEEEecCCccCCCCceE
Confidence 68999999999999999999999999999999999999999999999999875 3334556677766777877777778
Q ss_pred e-eeeEecC-CCCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEEeec
Q psy10650 358 T-NQQLYVP-PLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYP 409 (446)
Q Consensus 358 ~-~~~L~IP-~i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGtvP 409 (446)
+ ...|.|| +++||+...+++|+|+|.|+|.+.+.++..++.+++||+||++|
T Consensus 82 ~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~~~p 135 (136)
T PF02752_consen 82 EFNIQLQLPSNLPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIGSSP 135 (136)
T ss_dssp EEEEEE-----B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEEB-S
T ss_pred EEEEEEcCCCccCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEEEecC
Confidence 4 4899999 58888645899999999999999999877899999999999988
No 3
>KOG3865|consensus
Probab=99.62 E-value=2.2e-14 Score=139.52 Aligned_cols=121 Identities=31% Similarity=0.510 Sum_probs=87.1
Q ss_pred eEEEEeEEEecCCCCCceEE--------eecccEEEEEEEEEecCCCC-CccceEEEEEEeccccCCCCCccceeeeccc
Q psy10650 120 GIHSFPFKLGLPLGLPSTFL--------GKHGWVQYFCKAALREPTGY-THKNQQVFIIMSPIDLNLEPPILSVFIIMSP 190 (446)
Q Consensus 120 G~~~~pf~f~LP~~lP~Sf~--------~~~g~IrY~i~~~i~~p~~~-d~~~~~~~~V~~~~dl~~~p~~~~~~~~~~P 190 (446)
|.+.|||.|.+|.++|+|+. |+.+-|.|.+++-+.....- ..+....--+++.+.. ||
T Consensus 107 G~nAyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~IRKvqy-------------AP 173 (402)
T KOG3865|consen 107 GSNAYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLVIRKVQY-------------AP 173 (402)
T ss_pred CCCCCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeeeeeeeee-------------cC
Confidence 88889999999999999883 55678999999987654211 1111111123344322 33
Q ss_pred cccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeec
Q psy10650 191 IDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQ 263 (446)
Q Consensus 191 ~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~ 263 (446)
...+. +| +.++++. |.++.|+++|+++|||.-|..||.|+|+|.|.|+|++.|+.|++.+.|.
T Consensus 174 ~~~Gp------qP-~~~v~k~---FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~ 236 (402)
T KOG3865|consen 174 LEPGP------QP-SAEVSKQ---FLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQV 236 (402)
T ss_pred CCCCC------Cc-hhHhhHh---hccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEee
Confidence 22221 22 2233444 4789999999999999999999999999999999999999999999885
No 4
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=99.09 E-value=9.5e-11 Score=103.99 Aligned_cols=63 Identities=46% Similarity=0.835 Sum_probs=44.2
Q ss_pred CeeecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEeccccC
Q psy10650 114 PVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLN 176 (446)
Q Consensus 114 g~~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~~~dl~ 176 (446)
+..|++|.|.|||+|.||.++|+||++.+|+|+|.++|.+++++..+....+.|+|++++|+|
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l~~~~~~~~~~~~~~~v~~~id~n 149 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATLDRPGKKDHKAKREFTVVEPIDLN 149 (149)
T ss_dssp -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEESSTTSE--CGGEEEEEEEEEEB-
T ss_pred eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEEECCCCCCcEEEEEEEEECcccCC
Confidence 456777888888888888888888888888999999999999999898899999999999986
No 5
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.64 E-value=4.5e-08 Score=85.15 Aligned_cols=50 Identities=38% Similarity=0.600 Sum_probs=41.5
Q ss_pred cCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeec-cccc
Q psy10650 218 SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQ-PFDC 267 (446)
Q Consensus 218 ~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~-~~~~ 267 (446)
|+|+|++++++||+||+|||+|++.++|+|.|++.|+.|.+.|.|. +|.+
T Consensus 1 w~g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~ 51 (136)
T PF02752_consen 1 WSGKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKA 51 (136)
T ss_dssp -TEEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-S
T ss_pred CCCEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEE
Confidence 5899999999999999999999999999999999999999999997 4433
No 6
>KOG3780|consensus
Probab=98.51 E-value=6.1e-07 Score=93.86 Aligned_cols=69 Identities=41% Similarity=0.621 Sum_probs=62.3
Q ss_pred ccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccce
Q psy10650 265 FDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKV 333 (446)
Q Consensus 265 ~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~ 333 (446)
.....++.++|+|+..|.+.+.+++++.||++||.|.+.+.|+|.+++.+..+.++|.|.+.|.+....
T Consensus 170 ~~~~~~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q~~~~~~~~~~ 238 (427)
T KOG3780|consen 170 IISKASKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQKISYLAFSYG 238 (427)
T ss_pred chhhhhheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEEEEEEEEeecCC
Confidence 344556678889999999999999999999999999999999999999999999999999999987543
No 7
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.27 E-value=1.2e-06 Score=77.58 Aligned_cols=40 Identities=43% Similarity=0.792 Sum_probs=26.0
Q ss_pred CcccCCeeeEeeeEeecCCCCCCccccCCCeeecCeEEEEeEEEec
Q psy10650 85 PVLLSPGIHSFPFKLGLPLGLPSTFLGQAPVLLSPGIHSFPFKLGL 130 (446)
Q Consensus 85 ~~~Lp~G~H~fpF~~~LP~~LPsSfeg~~g~~l~~G~~~~pf~f~L 130 (446)
...|++|.|.|||+|+||.+||+||+|.+ |.+.|-.++.|
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~------g~I~Y~l~a~l 126 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNLPSSFEGSH------GSIRYKLKATL 126 (149)
T ss_dssp -----C-TTEEEEEE---TTS--SEEEE-------SEEEEEEEEEE
T ss_pred eecccCCCEEEEEEEECCCCCCceEeccC------cCEEEEEEEEE
Confidence 56799999999999999999999999998 68888888888
No 8
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=98.06 E-value=0.00084 Score=66.68 Aligned_cols=177 Identities=19% Similarity=0.277 Sum_probs=88.7
Q ss_pred eecCeEEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEeccccCCCCCccceeeeccccccCC
Q psy10650 116 LLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMSPIDLNLEPPILSVFIIMSPIDLNL 195 (446)
Q Consensus 116 ~l~~G~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~~~dl~~~p~~~~~~~~~~P~~~~~ 195 (446)
.|+.|.. |||.|.+-..--.||.|.+-.|+|.+++++.|+. .+......|-|... ...
T Consensus 92 ~l~~~~t-~pFeF~~~~k~yETY~G~~v~i~Y~lrv~v~R~~-~~i~k~~ef~V~~~---~~~----------------- 149 (275)
T PF03643_consen 92 KLPEGKT-FPFEFPLVEKPYETYHGVNVNIRYFLRVTVKRSY-KDISKEQEFWVQNF---SIT----------------- 149 (275)
T ss_dssp EE-S-EE-EEEEE-SB---S--EE-SSEEEEEEEEEEE--SS-S-EEEEEEEEEE-E---B-------------------
T ss_pred ccCCCcE-EeeEeCCCCCCCccEeeeEEEEEEEEEEEEEccC-CCcceEEEEEEEec---cCC-----------------
Confidence 4555666 9999987544456788888899999999999998 56666666665522 110
Q ss_pred CCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeee
Q psy10650 196 EPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGV 275 (446)
Q Consensus 196 ~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~ 275 (446)
|...+|+ .+++.+
T Consensus 150 --p~~~~~i------------------k~evgi----------------------------------------------- 162 (275)
T PF03643_consen 150 --PESNQPI------------------KMEVGI----------------------------------------------- 162 (275)
T ss_dssp --------E------------------EEEECE-----------------------------------------------
T ss_pred --CCCCCCc------------------ccccCC-----------------------------------------------
Confidence 1001121 111100
Q ss_pred eEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEee--eecCccCCCC
Q psy10650 276 ACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELAS--LTRGKIKPGE 353 (446)
Q Consensus 276 ~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~--~~~~~V~~g~ 353 (446)
.+-+++...++++.|.-.|.|.=.+.+. ..+..|+.+++.|+|.-++.+.... ..+..+|.. ++.+.+-+|.
T Consensus 163 ----e~~lhief~~~k~~~~l~d~i~G~i~f~-lv~~kIk~~elqLiR~Et~g~~~~~-~~e~t~i~~~eImDG~p~rge 236 (275)
T PF03643_consen 163 ----EDCLHIEFEYDKSKYHLKDVITGKIYFL-LVRIKIKSMELQLIRVETCGCGENY-AKESTEIQKIEIMDGAPCRGE 236 (275)
T ss_dssp ----TTTEEEEEEES-SEEETT-EEEEEEEEE-EESS-EEEEEEEEEEEEEECECCCE-EEEEEEEEEEEEESS---TT-
T ss_pred ----CccEEEEEEEcccceECCCCEEEEEEEE-EEeecceEEEEEEEEEEEEecCCcc-cccceEEEEEEeecCCccccc
Confidence 1123444444555555555433222221 2236789999999999988664332 234445544 4455555554
Q ss_pred ccceeeeeEecCC--CCCCCcCCCceEEEEEEEEEEEec
Q psy10650 354 RDDWTNQQLYVPP--LPPTNLRGCHLIKIQYDVFFIVDP 390 (446)
Q Consensus 354 ~~~~~~~~L~IP~--i~PT~l~~~~iI~V~Y~L~V~v~~ 390 (446)
.- -..|-+|. +.||...-...++|+|+|.+.+..
T Consensus 237 ~I---Pirl~l~~l~l~Pt~~~~~~~FsV~y~lnlvlid 272 (275)
T PF03643_consen 237 SI---PIRLFLPRLFLCPTYKNVNNKFSVEYELNLVLID 272 (275)
T ss_dssp EE---EEEEECCCT-----EEEECTTEEEEEEEEEEEEE
T ss_pred ee---eEEEEcCCcccCCcchhcCCcEEEEEEEEEEEEc
Confidence 32 56677788 788852225679999999997743
No 9
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=97.85 E-value=0.0025 Score=66.97 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=73.8
Q ss_pred ecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccc----e--eeeeEEEEeeeecCccCC
Q psy10650 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNK----V--LESETRELASLTRGKIKP 351 (446)
Q Consensus 278 ~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~----~--~~~~~~~V~~~~~~~V~~ 351 (446)
...|..-+.+++.|.+|..||.|...+.+.+.....+-.+.+.|.-.-.+...-. . ....++.+++.. .+-.
T Consensus 299 ~~n~~~va~~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~--e~~~ 376 (415)
T PF08737_consen 299 RRNGQRVARLSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHH--EICL 376 (415)
T ss_pred EECCeEEEEEEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccccccEEEEEEEEe--eeec
Confidence 3477888899999999999999999999988775677788888887666533221 1 111222233322 1212
Q ss_pred CCccceeeeeEecCC-CCCCCcCCCceEEEEEEEEEEEec
Q psy10650 352 GERDDWTNQQLYVPP-LPPTNLRGCHLIKIQYDVFFIVDP 390 (446)
Q Consensus 352 g~~~~~~~~~L~IP~-i~PT~l~~~~iI~V~Y~L~V~v~~ 390 (446)
+..... ...|.||. .+|++ .+.++++.|.|++.+.+
T Consensus 377 ~~~~~~-~f~l~IP~~~tp~F--~T~~v~lkW~LrfeFv~ 413 (415)
T PF08737_consen 377 DSRSRT-SFSLPIPLSATPQF--QTSGVSLKWRLRFEFVT 413 (415)
T ss_pred CCcceE-EEEeeCCCCCCCce--EeCCEEEEEEEEEEEEe
Confidence 222122 67899999 56665 68899999999998765
No 10
>KOG3865|consensus
Probab=97.27 E-value=0.00052 Score=67.97 Aligned_cols=125 Identities=26% Similarity=0.305 Sum_probs=91.6
Q ss_pred EecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEe--ccceeeeeEEEEeeee---cCccCC
Q psy10650 277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA--RNKVLESETRELASLT---RGKIKP 351 (446)
Q Consensus 277 c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a--~~~~~~~~~~~V~~~~---~~~V~~ 351 (446)
..+.|+++|.+++|+.-|..||.|.+++.|.|+|+++|+.|++.+.|...... .... .+.|+.++ .+.|.|
T Consensus 189 lmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy----~~~VA~~E~~eGc~v~P 264 (402)
T KOG3865|consen 189 LMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQY----KKPVAMEETDEGCPVAP 264 (402)
T ss_pred ccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEecccc----cceeeeeecccCCccCC
Confidence 46799999999999999999999999999999999999999999999654432 2222 23455443 568999
Q ss_pred CCccceeeeeEecCCC----------------------CCCC-cCC---Cc--eEEEEEEEEEEEecCC-CCCCeEEEec
Q psy10650 352 GERDDWTNQQLYVPPL----------------------PPTN-LRG---CH--LIKIQYDVFFIVDPKS-IEKPVKLQLP 402 (446)
Q Consensus 352 g~~~~~~~~~L~IP~i----------------------~PT~-l~~---~~--iI~V~Y~L~V~v~~~~-~~~~l~v~lP 402 (446)
|++.+- ..-.+|-+ +.|+ ++. .. =|-|+|.++|.+.+++ +..++.+++|
T Consensus 265 gstl~K--vf~l~PllanN~dkrGlALDG~lKhEDtnLASSTii~~~~~re~lGI~VsY~VkVkL~vs~ll~ge~~~ElP 342 (402)
T KOG3865|consen 265 GSTLSK--VFTLTPLLANNKDKRGLALDGKLKHEDTNLASSTIIREGADREALGILVSYKVKVKLVVSRLLGGEVAAELP 342 (402)
T ss_pred CCeeee--eEEechhhhcCcccccccccccccccccccchhheecCCCCcceeEEEEEEEEEEEEEEecccCCceeeecc
Confidence 987542 33334422 1111 111 01 1789999999998884 6789999999
Q ss_pred EEEEe
Q psy10650 403 IMLAT 407 (446)
Q Consensus 403 IiIGt 407 (446)
+++..
T Consensus 343 F~Lmh 347 (402)
T KOG3865|consen 343 FTLMH 347 (402)
T ss_pred eEEec
Confidence 98765
No 11
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=96.82 E-value=0.017 Score=54.13 Aligned_cols=26 Identities=38% Similarity=0.728 Sum_probs=19.8
Q ss_pred CcccCCeeeEeeeEeecCCCCCCccc
Q psy10650 85 PVLLSPGIHSFPFKLGLPLGLPSTFL 110 (446)
Q Consensus 85 ~~~Lp~G~H~fpF~~~LP~~LPsSfe 110 (446)
+..|..|.|.|||++-||-+||.|..
T Consensus 44 ~t~l~~G~h~fPFS~LiPG~LPaS~~ 69 (191)
T PF13002_consen 44 PTTLTKGSHAFPFSYLIPGHLPASMD 69 (191)
T ss_pred ccccCCCcccCCeeEECCCCCccccc
Confidence 44578888888888888888887764
No 12
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=96.51 E-value=0.016 Score=54.29 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=69.7
Q ss_pred eeecCeEEEEeEEEecCCCCCceEE---eecccEEEEEEEEEecC--CC-CCccceEEEEEEeccccCCCCCccceeeec
Q psy10650 115 VLLSPGIHSFPFKLGLPLGLPSTFL---GKHGWVQYFCKAALREP--TG-YTHKNQQVFIIMSPIDLNLEPPILSVFIIM 188 (446)
Q Consensus 115 ~~l~~G~~~~pf~f~LP~~lP~Sf~---~~~g~IrY~i~~~i~~p--~~-~d~~~~~~~~V~~~~dl~~~p~~~~~~~~~ 188 (446)
..|..|.|.|||++-||..+|.|.. +..+.|.|.+.|++..- .. ........+.+..++++... ..
T Consensus 45 t~l~~G~h~fPFS~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~Rs-------i~- 116 (191)
T PF13002_consen 45 TTLTKGSHAFPFSYLIPGHLPASMDLGSTPLVSIKYELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKRS-------IL- 116 (191)
T ss_pred cccCCCcccCCeeEECCCCCccccccCCCCcEEEEEEEEEEEEEccCccccCCCcceeEEEeeeEEEEEe-------cC-
Confidence 3567899999999999999999998 77899999999998762 11 00111122333334433320 00
Q ss_pred cccccCCCCCCCCCCCceeEeEeEeeeeecCCcEEEEEEEcccccccCceEEEEEEEEcCCcce
Q psy10650 189 SPIDLNLEPPILSQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKIT 252 (446)
Q Consensus 189 ~P~~~~~~~p~~~~p~~~~~~k~~~~~c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ 252 (446)
| .|. . ..+. .|.--.|...+.+|--.| |--+.+|.+.++|-++.+
T Consensus 117 -~------gpd----~-----~S~R--vFPPT~l~a~a~lP~VI~-P~gtfpvel~LdGv~~~~ 161 (191)
T PF13002_consen 117 -P------GPD----K-----NSLR--VFPPTNLTASAVLPNVIH-PKGTFPVELRLDGVVSKD 161 (191)
T ss_pred -C------CCC----c-----ccEE--ecCCCCcEEEEEcCCeeC-CCCcccEEEEEecccCCC
Confidence 0 010 0 0111 345566788888886665 555689999999976544
No 13
>KOG2717|consensus
Probab=96.42 E-value=0.12 Score=49.78 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=64.9
Q ss_pred CCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCc---cc
Q psy10650 280 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGER---DD 356 (446)
Q Consensus 280 ~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~---~~ 356 (446)
.+...++-.+|++.++..+.+.=.+.++. |...|+.|++.|+|.-+........+ +...|. ...|+.|+- .+
T Consensus 176 ~p~FlvtG~Ld~t~c~~t~PltGeltVe~-seaaI~Sie~qLvRVEtcgc~Egy~~-dateIQ---siQIADGdVcr~l~ 250 (313)
T KOG2717|consen 176 TPGFLVTGKLDATQCSLTDPLTGELTVEA-SEAAITSIEIQLVRVETCGCGEGYVT-DATEIQ---SIQIADGDVCRNLT 250 (313)
T ss_pred CCceEEEeeecceeeEecCCccceEEEEe-eccceeEEEEEEEEEEEeecccceec-ccceee---eEEeccCccccCCc
Confidence 44556677778888877776655555554 55689999999999887766543321 111222 223434331 22
Q ss_pred eeeeeEecCC--CCCCCcCCCceEEEEEEEEEEEecCC
Q psy10650 357 WTNQQLYVPP--LPPTNLRGCHLIKIQYDVFFIVDPKS 392 (446)
Q Consensus 357 ~~~~~L~IP~--i~PT~l~~~~iI~V~Y~L~V~v~~~~ 392 (446)
+ ..-+.+|. +.||. ...-++|++.+.+.+.+..
T Consensus 251 l-PIymvlPRLftCPtl--~t~nFkvEFevni~v~fk~ 285 (313)
T KOG2717|consen 251 L-PIYMVLPRLFTCPTL--FTGNFKVEFEVNITVSFKS 285 (313)
T ss_pred e-eEEEEechhhcCCce--eccccEEEEEEEEEEEEcc
Confidence 2 34455677 67885 4666799999999887753
No 14
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=95.33 E-value=0.89 Score=43.79 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=79.5
Q ss_pred ecCCceeEEEEeccceecCCCeEEEEEEEeec-cceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeee---cCccCCCC
Q psy10650 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNR-SKITVKSTKAALTETIQYLARNKVLESETRELASLT---RGKIKPGE 353 (446)
Q Consensus 278 ~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~-S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~---~~~V~~g~ 353 (446)
+.-|..++...+++..|.|||+|.=.+.|.-. ....|..|.+.|+..+.....+... ....++.... .-.|.+|+
T Consensus 8 ~GiG~akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~-~~~~~~~~~~v~~~f~I~~ge 86 (218)
T PF07070_consen 8 IGIGGAKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEY-TQEVELARVRVSGPFTIEPGE 86 (218)
T ss_pred cCCCCceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeE-EEEEEEEEEEeCCCEEECCCC
Confidence 45688899999999999999999999999885 6689999999999887765544321 1233444432 34689999
Q ss_pred ccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecCC
Q psy10650 354 RDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKS 392 (446)
Q Consensus 354 ~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~ 392 (446)
..++ ...|.||.-.|-+. . ...|.|+-.+++.+
T Consensus 87 ~~~i-PF~~~lP~etPiT~-~----~~~v~l~T~LdI~~ 119 (218)
T PF07070_consen 87 EKEI-PFSFPLPWETPITE-G----GMRVWLRTGLDIAG 119 (218)
T ss_pred EEEE-eEEEECCCCCCccC-C----CcEEEEEEEEEeCC
Confidence 9888 88999998555432 2 45666677777765
No 15
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=93.32 E-value=1.9 Score=42.97 Aligned_cols=138 Identities=19% Similarity=0.200 Sum_probs=74.4
Q ss_pred CceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeecc--cee
Q psy10650 236 GETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRS--KIT 313 (446)
Q Consensus 236 GE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S--~~~ 313 (446)
|..+.|.+.+++...+....++.. .|.. -.-..|..||+|.=.+.|.... +..
T Consensus 2 ~~~~~i~i~l~~~~~rk~v~~~~~--------------------~~~~-----~~~~iY~~gE~V~G~V~I~~~~gk~~~ 56 (275)
T PF03643_consen 2 GPPCDIDIELDDEDSRKKVEVKTD--------------------DGKK-----EKNPIYSDGETVSGKVVITSKPGKSLE 56 (275)
T ss_dssp TTTEEEEEEETTCCCS-EEEEE-T--------------------TS-E-----EEEEEEETC--EEEEEEEEESSTS-EE
T ss_pred CCceEEEEEECCCcccceEEEECC--------------------CCCE-----EEeceEcCCCEEEEEEEEEECCCCceE
Confidence 567778888888877766554422 0111 0113688999999999997766 556
Q ss_pred eeeeEEEEEEEEEE-Eeccceee--eeEEEEeeeecCccCCCCccceeeeeEecCC---CCCCCcCCCceEEEEEEEEEE
Q psy10650 314 VKSTKAALTETIQY-LARNKVLE--SETRELASLTRGKIKPGERDDWTNQQLYVPP---LPPTNLRGCHLIKIQYDVFFI 387 (446)
Q Consensus 314 I~~i~v~Liq~v~y-~a~~~~~~--~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~---i~PT~l~~~~iI~V~Y~L~V~ 387 (446)
-.+|++.|+-.+.. +.+++.-. ...+.++ ..+.+..+.+ .+|..|. --.|. .+..++|.|.|+|+
T Consensus 57 H~GI~l~lvG~ie~~~~~~k~~~f~~~~~eL~--~~G~l~~~~t-----~pFeF~~~~k~yETY--~G~~v~i~Y~lrv~ 127 (275)
T PF03643_consen 57 HQGIKLELVGQIEAFYDSGKPIEFLSLSIELA--PPGKLPEGKT-----FPFEFPLVEKPYETY--HGVNVNIRYFLRVT 127 (275)
T ss_dssp ES-EEEEEEEEEEEGCCTT-EEEEEEEEEEEE---SEEE-S-EE-----EEEEE-SB---S--E--E-SSEEEEEEEEEE
T ss_pred EeeEEEEEEEeEeEeccCCCceEeEEeeEEEc--CCcccCCCcE-----EeeEeCCCCCCCccE--eeeEEEEEEEEEEE
Confidence 67899999876644 33332211 1111111 1234444444 2333333 34564 57789999999999
Q ss_pred EecCCCCCCeEEEecEEEEeec
Q psy10650 388 VDPKSIEKPVKLQLPIMLATYP 409 (446)
Q Consensus 388 v~~~~~~~~l~v~lPIiIGtvP 409 (446)
+.-+. .++.-+.++++-...
T Consensus 128 v~R~~--~~i~k~~ef~V~~~~ 147 (275)
T PF03643_consen 128 VKRSY--KDISKEQEFWVQNFS 147 (275)
T ss_dssp E--SS--S-EEEEEEEEEE-EB
T ss_pred EEccC--CCcceEEEEEEEecc
Confidence 97654 789999999887543
No 16
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=91.49 E-value=0.56 Score=49.48 Aligned_cols=57 Identities=26% Similarity=0.486 Sum_probs=45.6
Q ss_pred ccCCCCccceeeeeEecCC-CCCCCcCCCceEEEEEEEEEEEecCC--CCCCeEEEecEEEEe
Q psy10650 348 KIKPGERDDWTNQQLYVPP-LPPTNLRGCHLIKIQYDVFFIVDPKS--IEKPVKLQLPIMLAT 407 (446)
Q Consensus 348 ~V~~g~~~~~~~~~L~IP~-i~PT~l~~~~iI~V~Y~L~V~v~~~~--~~~~l~v~lPIiIGt 407 (446)
.+.||++++| ...+.+|. +|||+ ++..|++.|.|.|.+.-.+ -.....+.+||-|-.
T Consensus 114 ~L~pge~k~f-~~~~~lP~~lPPsy--~g~~i~~~Y~l~vg~~~~~~~~~~~~~~~~Pi~v~~ 173 (415)
T PF08737_consen 114 RLAPGESKSF-HFSFTLPKDLPPSY--RGKAIKISYSLVVGTQRGSSVNSKVKSIRVPIRVLP 173 (415)
T ss_pred EECCCCcEEE-EEEEeCCCCCCCCC--cCcEEEEEEEEEEEEEEcCCCCcceEEEEeCEEEee
Confidence 5688999999 88999999 88885 5999999999999886621 224567888887763
No 17
>COG1470 Predicted membrane protein [Function unknown]
Probab=88.59 E-value=16 Score=38.95 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=59.8
Q ss_pred cCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCCCCCCcCC
Q psy10650 295 VPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPTNLRG 374 (446)
Q Consensus 295 ~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT~l~~ 374 (446)
.+||...+.+.|.|..+.+++.|++.+---. +..- .|....-..++||+..+. ...+.+|+-++..
T Consensus 394 taGee~~i~i~I~NsGna~LtdIkl~v~~Pq-----gWei-----~Vd~~~I~sL~pge~~tV-~ltI~vP~~a~aG--- 459 (513)
T COG1470 394 TAGEEKTIRISIENSGNAPLTDIKLTVNGPQ-----GWEI-----EVDESTIPSLEPGESKTV-SLTITVPEDAGAG--- 459 (513)
T ss_pred cCCccceEEEEEEecCCCccceeeEEecCCc-----cceE-----EECcccccccCCCCcceE-EEEEEcCCCCCCC---
Confidence 4999999999999999999999888665322 1111 122223356888988887 8889999865543
Q ss_pred CceEEEEEEEEEEEecCCCCCCeEEEecEEEEe
Q psy10650 375 CHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLAT 407 (446)
Q Consensus 375 ~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGt 407 (446)
+|++.+++..+-.. -.-.|-|.+|.
T Consensus 460 ------dY~i~i~~ksDq~s--~e~tlrV~V~~ 484 (513)
T COG1470 460 ------DYRITITAKSDQAS--SEDTLRVVVGQ 484 (513)
T ss_pred ------cEEEEEEEeecccc--ccceEEEEEec
Confidence 47777776555322 23333444554
No 18
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=85.19 E-value=10 Score=31.76 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred EEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCcee--EEEEeccceecCCCeE
Q psy10650 223 LCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVL--CRVSLDRGGYVPGETI 300 (446)
Q Consensus 223 ~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~--l~~sl~r~gY~pGE~I 300 (446)
++.+.++.... -|+.+.+.+.+.|.++..++.+++.|.-.+. ..+|... +.......-..||++.
T Consensus 2 ~~~i~~~~~~~-vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v------------~ytG~~~~~~~~~~~~~~l~p~~~~ 68 (107)
T PF00927_consen 2 EIKIKLPGDPV-VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTV------------EYTGLTRDQFKKEKFEVTLKPGETK 68 (107)
T ss_dssp EEEEEEESEEB-TTSEEEEEEEEEE-SSS-EECEEEEEEEEEE------------ECTTTEEEEEEEEEEEEEE-TTEEE
T ss_pred eEEEEECCCcc-CCCCEEEEEEEEeCCcCccccceeEEEEEEE------------EECCcccccEeEEEcceeeCCCCEE
Confidence 45566666665 8999999999999999999999888754321 1244442 3334444455689988
Q ss_pred EEEEEEeec
Q psy10650 301 IINATVYNR 309 (446)
Q Consensus 301 ~i~v~I~N~ 309 (446)
.+.+.|.-.
T Consensus 69 ~~~~~i~p~ 77 (107)
T PF00927_consen 69 SVEVTITPS 77 (107)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEEce
Confidence 888887553
No 19
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=83.99 E-value=3.8 Score=33.64 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=21.8
Q ss_pred EEEEEcccccccCceEEEEEEEEcCC
Q psy10650 224 CRVSLDRGGYVPGETIIINATVYNRS 249 (446)
Q Consensus 224 l~v~lpr~gYvPGE~I~v~v~I~N~S 249 (446)
+-+..||..|.|||+|.+.+-+-+..
T Consensus 2 ~~i~TDr~iYrPGetV~~~~~~~~~~ 27 (99)
T PF01835_consen 2 IFIQTDRPIYRPGETVHFRAIVRDLD 27 (99)
T ss_dssp EEEEESSSEE-TTSEEEEEEEEEEEC
T ss_pred EEEECCccCcCCCCEEEEEEEEeccc
Confidence 35788999999999999999987776
No 20
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=6.8 Score=36.51 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=53.0
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEE--EEEeec-
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIIN--ATVYNR- 309 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~--v~I~N~- 309 (446)
.|||+..+.-+..|.|.++|....+-=+. +-.| ..=.++.|+|+. .+-..|||+|.+= ..|++.
T Consensus 90 ~pGet~~~~y~a~N~sd~~itg~A~~nv~-P~~Ag~YF~KveCFCFt-----------eq~L~pgE~vemPV~FfVDpd~ 157 (195)
T COG3175 90 RPGETNLIFYEAENLSDKPITGQATYNVA-PGQAGAYFNKVECFCFT-----------EQTLKPGETVEMPVVFFVDPDF 157 (195)
T ss_pred ccCceEEEEEEEecCCCCCceeEEecccC-hhHhhhheeeeeEEEee-----------ecccCCCCeEeccEEEEECccc
Confidence 69999999999999999999885432221 1111 112356788873 3556799987655 466764
Q ss_pred -cceeeeeeEEEEEEEEEEEe
Q psy10650 310 -SKITVKSTKAALTETIQYLA 329 (446)
Q Consensus 310 -S~~~I~~i~v~Liq~v~y~a 329 (446)
....++.|+.-..-+.-|.+
T Consensus 158 ~~dPe~kdvk~iTLSYTFF~~ 178 (195)
T COG3175 158 ADDPEMKDVKTITLSYTFFPI 178 (195)
T ss_pred ccCcccCCCCeEEEEEEEEEc
Confidence 33445666555554544443
No 21
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=81.96 E-value=12 Score=29.39 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=36.0
Q ss_pred cCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCCCCC
Q psy10650 295 VPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPLPPT 370 (446)
Q Consensus 295 ~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i~PT 370 (446)
.+|+++.+.+.|.|.....+..+.++|-- -.|........ ....+++|.+.++ ...+.+|...+.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-----P~GW~~~~~~~-----~~~~l~pG~s~~~-~~~V~vp~~a~~ 66 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-----PEGWTVSASPA-----SVPSLPPGESVTV-TFTVTVPADAAP 66 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE-------TTSE---EEE-----EE--B-TTSEEEE-EEEEEE-TT--S
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-----CCCccccCCcc-----ccccCCCCCEEEE-EEEEECCCCCCC
Confidence 48999999999999888888877776652 12222111111 1227889998887 888999985543
No 22
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=80.91 E-value=4.7 Score=37.94 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=48.6
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEE--EEEeecc
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIIN--ATVYNRS 310 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~--v~I~N~S 310 (446)
.|||+..+.-.+.|.|.+.|....+==+ .+..+ ..=.++.|+|+ +.+-+.|||++.+- ..|+..-
T Consensus 91 ~pGE~~~~~y~a~N~sd~~i~g~A~~nV-~P~~a~~YF~KieCFCF-----------~eQ~L~pgE~~~mPV~F~IDP~i 158 (188)
T PRK05089 91 HPGELNLVFYEAENLSDRPIVGQAIPSV-TPGQAGAYFNKIECFCF-----------TQQTLQPGETREMPVVFYVDPDL 158 (188)
T ss_pred cCCCeEEEEEEEECCCCCcEEEEEeccc-CHHHHhhhccceeeecc-----------cCcccCCCCeEecCEEEEECCCc
Confidence 5999999999999999999988654322 23222 22235778887 56778899976554 4566654
Q ss_pred ceeeeeeE
Q psy10650 311 KITVKSTK 318 (446)
Q Consensus 311 ~~~I~~i~ 318 (446)
..+|+.|.
T Consensus 159 ~~dv~~iT 166 (188)
T PRK05089 159 PKDVKTIT 166 (188)
T ss_pred ccccCEEE
Confidence 44454433
No 23
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=80.87 E-value=6.1 Score=38.10 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=33.0
Q ss_pred eeecCe-EEEEeEEEecCCCCCceEEeecccEEEEEEEEEecCCCCCccceEEEEEEe
Q psy10650 115 VLLSPG-IHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQVFIIMS 171 (446)
Q Consensus 115 ~~l~~G-~~~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~~d~~~~~~~~V~~ 171 (446)
+.+.+| .+.+||+|+||.+.|-|. +..+|.+...++..+..|....-.+.|.+
T Consensus 80 f~I~~ge~~~iPF~~~lP~etPiT~----~~~~v~l~T~LdI~~avD~~D~D~i~V~P 133 (218)
T PF07070_consen 80 FTIEPGEEKEIPFSFPLPWETPITE----GGMRVWLRTGLDIAGAVDPGDLDPIEVEP 133 (218)
T ss_pred EEECCCCEEEEeEEEECCCCCCccC----CCcEEEEEEEEEeCCCCCCCCceeEEEeC
Confidence 445554 566677777777666655 44557777777777766654444555554
No 24
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=79.76 E-value=5.3 Score=36.35 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=33.0
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEE--EEEeec
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIIN--ATVYNR 309 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~--v~I~N~ 309 (446)
.|||+..+.-.+.|.|.+.|....+=-+ .+..+ ..=.++.|+|+ +.+-..|||++.+- ..|+..
T Consensus 64 ~pGe~~~~~y~a~N~s~~~i~g~A~~nV-~P~~a~~YF~KieCFCF-----------~eQ~L~pgE~~~mPv~F~IDp~ 130 (152)
T PF04442_consen 64 HPGETALVFYEATNPSDKPITGQAIPNV-TPGEAGKYFNKIECFCF-----------EEQTLAPGETVDMPVVFYIDPD 130 (152)
T ss_dssp ETT--EEEEEEEEE-SSS-EE---EEEE--SSS-STTECCS-TTS------------S--EE-TT-EEEEEEEEEE-GG
T ss_pred CCCCEEEEEEEEECCCCCcEEEEEeeeE-CHHHhhhhccccceEec-----------cCcCcCCCCeEEEEEEEEECCc
Confidence 5999999999999999999988654333 33322 22235778886 55778899976554 455653
No 25
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=77.73 E-value=6.5 Score=32.25 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=21.7
Q ss_pred EEEEeccceecCCCeEEEEEEEeecc
Q psy10650 285 CRVSLDRGGYVPGETIIINATVYNRS 310 (446)
Q Consensus 285 l~~sl~r~gY~pGE~I~i~v~I~N~S 310 (446)
+-+.+||..|.|||+|.+.+.+.+..
T Consensus 2 ~~i~TDr~iYrPGetV~~~~~~~~~~ 27 (99)
T PF01835_consen 2 IFIQTDRPIYRPGETVHFRAIVRDLD 27 (99)
T ss_dssp EEEEESSSEE-TTSEEEEEEEEEEEC
T ss_pred EEEECCccCcCCCCEEEEEEEEeccc
Confidence 34688999999999999999987765
No 26
>KOG3063|consensus
Probab=73.44 E-value=96 Score=30.41 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=26.0
Q ss_pred EEeEEEecCCCCCceEEeecccEEEEEEEEEecCCC
Q psy10650 123 SFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTG 158 (446)
Q Consensus 123 ~~pf~f~LP~~lP~Sf~~~~g~IrY~i~~~i~~p~~ 158 (446)
.|||.|.--..--.|+.|..-..||.+++++.|-..
T Consensus 105 ~fpFeF~~vekpyEsY~G~NV~lrY~lkvTv~Rr~~ 140 (301)
T KOG3063|consen 105 SFPFEFPHVEKPYESYIGKNVRLRYFLKVTVSRRLT 140 (301)
T ss_pred cCCccccccccchhhhcCcceEEEEEEEEEEEechh
Confidence 577777654444456667777889999999987643
No 27
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=72.85 E-value=4.8 Score=38.30 Aligned_cols=24 Identities=42% Similarity=0.862 Sum_probs=15.2
Q ss_pred cccCCe-eeEeeeEeecCCCCCCcc
Q psy10650 86 VLLSPG-IHSFPFKLGLPLGLPSTF 109 (446)
Q Consensus 86 ~~Lp~G-~H~fpF~~~LP~~LPsSf 109 (446)
.+|+|| .|+|||.+.||.+.|-++
T Consensus 100 fTIqpgEe~~fpf~l~lP~~tPvT~ 124 (270)
T COG4326 100 FTIQPGEERNFPFELSLPWNTPVTI 124 (270)
T ss_pred EEecCCceEeccEEEecCCCCceee
Confidence 345555 466666666666666665
No 28
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=72.50 E-value=6.4 Score=37.47 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=64.9
Q ss_pred ecCCceeEEEEeccceecCCCeEEEEEEEee-ccceeeeeeEEEEEEEEEEEec-cceeeeeEEEEeeeec---CccCCC
Q psy10650 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYN-RSKITVKSTKAALTETIQYLAR-NKVLESETRELASLTR---GKIKPG 352 (446)
Q Consensus 278 ~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N-~S~~~I~~i~v~Liq~v~y~a~-~~~~~~~~~~V~~~~~---~~V~~g 352 (446)
.+=|..++.-.+...+|.||+.+...+.|.- .....|+.|.++|. ..|.+. ......+..++++-.. --|.||
T Consensus 28 ~GIGaAKVDt~L~~~~~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~--t~Y~~evdDe~~~~~~t~~n~rl~~~fTIqpg 105 (270)
T COG4326 28 FGIGAAKVDTVLQQEVLYPGQSVKGIVHVYGGATAQDIDNIELKLC--TCYIAEVDDERGQQQGTLANWRLPYAFTIQPG 105 (270)
T ss_pred cCcchhhhhhhhhhccccCCceEEEEEEEecCchHhhhhhhhhhhe--eeEEEEeccccceeEEEEEEEeecceEEecCC
Confidence 3456677777888999999999999999876 46678888888776 345442 1122233445554332 358999
Q ss_pred CccceeeeeEecCCCCCCCc
Q psy10650 353 ERDDWTNQQLYVPPLPPTNL 372 (446)
Q Consensus 353 ~~~~~~~~~L~IP~i~PT~l 372 (446)
++..| ...|.+|...|-++
T Consensus 106 Ee~~f-pf~l~lP~~tPvT~ 124 (270)
T COG4326 106 EERNF-PFELSLPWNTPVTI 124 (270)
T ss_pred ceEec-cEEEecCCCCceee
Confidence 99988 89999999666543
No 29
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=72.14 E-value=40 Score=28.03 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=45.0
Q ss_pred EEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEec
Q psy10650 285 CRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYV 364 (446)
Q Consensus 285 l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~I 364 (446)
+.+.++.... .|+.+.+.+.+.|.++..++.+++.|.-...+++.-.... .-.......|.||++.. ..+.|
T Consensus 3 ~~i~~~~~~~-vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~----~~~~~~~~~l~p~~~~~---~~~~i 74 (107)
T PF00927_consen 3 IKIKLPGDPV-VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQ----FKKEKFEVTLKPGETKS---VEVTI 74 (107)
T ss_dssp EEEEEESEEB-TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEE----EEEEEEEEEE-TTEEEE---EEEEE
T ss_pred EEEEECCCcc-CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCccccc----EeEEEcceeeCCCCEEE---EEEEE
Confidence 4455555554 8999999999999999999999999977666665432110 00111223577777653 45555
Q ss_pred CC
Q psy10650 365 PP 366 (446)
Q Consensus 365 P~ 366 (446)
.+
T Consensus 75 ~p 76 (107)
T PF00927_consen 75 TP 76 (107)
T ss_dssp -H
T ss_pred Ec
Confidence 44
No 30
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=71.44 E-value=11 Score=36.70 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=44.1
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEEE--EEee
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINA--TVYN 308 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v--~I~N 308 (446)
.|||+..+.-.+.|.|.+.|..+.+==+ .+..+ ..=.++.|+|+ +.+-+.|||++.+-+ .|+.
T Consensus 135 ~pGE~~lv~Y~a~N~sd~~i~G~A~ynV-~P~~Ag~YFnKieCFCF-----------~eQ~L~pgE~~~MPV~F~IDP 200 (232)
T PTZ00128 135 LPGETALAFYRAKNRSDKPVIGVATYHI-APPEAGLYFNKIQCFCF-----------EEQRLNPHEEVDMPVFFYIDP 200 (232)
T ss_pred cCCCeEEEEEEEECCCCCcEEEEEeccc-CHHHHhhhccceeeecc-----------cccccCCCCeEecCEEEEECC
Confidence 5999999999999999999998754322 22222 12235778887 557788999876654 5555
No 31
>KOG2540|consensus
Probab=69.86 E-value=13 Score=35.66 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccc-cccceeeeeEecCCceeEEEEeccceecCCCeEEEEE--EEee--
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDC-EIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINA--TVYN-- 308 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~-~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v--~I~N-- 308 (446)
.|||+...--...|.|.++|.+|+--= -.++.| ..=.++.|+|+ +.+-..|||.|.+-+ .|+.
T Consensus 160 ~PGEtALaFYta~N~sdkpIiGvstYn-i~P~~Aa~YFnKiqCFCF-----------EEQ~L~pgE~vDmPVFFyIDPef 227 (269)
T KOG2540|consen 160 LPGETALAFYTAENPSDKPIIGVSTYN-ITPGQAAVYFNKIQCFCF-----------EEQKLNPGEQVDMPVFFYIDPEF 227 (269)
T ss_pred cCCcceeeeEeccCCCCCCceeeEeec-cCccHhhhheeceeEEee-----------hhhccCCCcccCcceEEEeCccc
Confidence 699999999999999999999986322 223322 11124667776 445678999887665 4555
Q ss_pred ccceeeeeeEEEEEEEEEEEeccc
Q psy10650 309 RSKITVKSTKAALTETIQYLARNK 332 (446)
Q Consensus 309 ~S~~~I~~i~v~Liq~v~y~a~~~ 332 (446)
.+.-.+..|.--|.-+.-|.|+..
T Consensus 228 a~DP~m~~id~i~LsYTFFea~~g 251 (269)
T KOG2540|consen 228 ATDPAMDGIDDILLSYTFFEAKYG 251 (269)
T ss_pred ccCcccccccceEEEEEEEEeecC
Confidence 456677788888887777777643
No 32
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=69.52 E-value=60 Score=26.47 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=42.0
Q ss_pred EcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEe
Q psy10650 228 LDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY 307 (446)
Q Consensus 228 lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~ 307 (446)
|+-..+..|++....+.|.|.|....+. .+.+.. ...-.+.+........||+++.+.+.+.
T Consensus 11 ldFG~v~~g~~~~~~v~l~N~s~~p~~f---~v~~~~---------------~~~~~~~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 11 LDFGNVFVGQTYSRTVTLTNTSSIPARF---RVRQPE---------------SLSSFFSVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEeeEEccCCEEEEEEEEEECCCCCEEE---EEEeCC---------------cCCCCEEEECCCCEECCCCEEEEEEEEE
Confidence 4445677899999999999999887542 222211 0011244455566677999999998877
Q ss_pred e
Q psy10650 308 N 308 (446)
Q Consensus 308 N 308 (446)
.
T Consensus 73 ~ 73 (102)
T PF14874_consen 73 P 73 (102)
T ss_pred e
Confidence 3
No 33
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=69.27 E-value=60 Score=26.32 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=26.8
Q ss_pred ceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEEE
Q psy10650 282 PVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAAL 321 (446)
Q Consensus 282 ~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~L 321 (446)
++.+...+|+. +..||.+.+.+.|.|.....++ +.++|
T Consensus 55 p~~i~~~lP~~-l~~GD~~~i~v~v~N~~~~~~~-v~V~l 92 (92)
T PF00207_consen 55 PFFIQLNLPRS-LRRGDQIQIPVTVFNYTDKDQE-VTVTL 92 (92)
T ss_dssp SEEEEEE--SE-EETTSEEEEEEEEEE-SSS-EE-EEEEE
T ss_pred eEEEEcCCCcE-EecCCEEEEEEEEEeCCCCCEE-EEEEC
Confidence 67788899977 4799999999999998877663 45543
No 34
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=61.82 E-value=37 Score=26.59 Aligned_cols=59 Identities=31% Similarity=0.471 Sum_probs=32.2
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEee
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYN 308 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N 308 (446)
.||+++.+.+.|.|.....+..+.+.|.- + ..| -...+. ..+. ...||++..+.+.|.-
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P-~GW--------~~~~~~----~~~~--~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-P-EGW--------TVSASP----ASVP--SLPPGESVTVTFTVTV 60 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE----TTS--------E---EE----EEE----B-TTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-C-CCc--------cccCCc----cccc--cCCCCCEEEEEEEEEC
Confidence 48999999999999998888877777643 1 111 100111 1222 4568998888777754
No 35
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=61.53 E-value=24 Score=27.48 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=34.7
Q ss_pred CCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeece
Q psy10650 219 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAA 259 (446)
Q Consensus 219 sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~ 259 (446)
...+.+.-+.+.....|||.|..++.+.|........+.+.
T Consensus 23 ~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~ 63 (76)
T PF01345_consen 23 IPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVT 63 (76)
T ss_pred CCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEE
Confidence 34567778888999999999999999999999888876544
No 36
>PF04426 Bul1_C: Bul1 C terminus; InterPro: IPR022794 This domain contains the C terminus of Saccharomyces cerevisiae Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. This domain is found C-terminal to PF04425 from PFAM. This signature also matches the C terminus of some bacterial Methyl-accepting chemotaxis proteins.
Probab=61.45 E-value=15 Score=36.56 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEEe
Q psy10650 367 LPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLAT 407 (446)
Q Consensus 367 i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGt 407 (446)
+.||+ .+.++.=-|.|+|.+.+.+....+.+.+||.|..
T Consensus 233 LVPsF--qSCl~~R~Y~lrv~ik~~~~~~~~~l~VPv~i~k 271 (272)
T PF04426_consen 233 LVPSF--QSCLCSRLYYLRVNIKFKNHGGSVSLKVPVQIQK 271 (272)
T ss_pred cCCCc--hheeeeeEEEEEEEEEEcCCCCEEEEEeceEEee
Confidence 67885 4558888999999999954446799999999864
No 37
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=61.43 E-value=1e+02 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=21.9
Q ss_pred eeEEEEeccceecCCCeEEEEEEEeeccceee
Q psy10650 283 VLCRVSLDRGGYVPGETIIINATVYNRSKITV 314 (446)
Q Consensus 283 v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I 314 (446)
..++++.++..|.||+.+.+.+.....+...+
T Consensus 95 ~~v~l~~~~~~~~Pg~~~~~~i~~~~~s~v~l 126 (136)
T PF07703_consen 95 LKVELTASPDEYKPGEEVTLRIKAPPNSLVGL 126 (136)
T ss_dssp SSEEEEESSSSBTTTSEEEEEEEESTTEEEEE
T ss_pred ceEEEEEecceeCCCCEEEEEEEeCCCCEEEE
Confidence 45566667788888888888887754444333
No 38
>KOG3063|consensus
Probab=59.66 E-value=45 Score=32.60 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=73.3
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEe--eccc
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVY--NRSK 311 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~--N~S~ 311 (446)
.=|+.|.|.+..+|.-++..-.++ ...|.+. ..-.|.-||++.=.+.+. +...
T Consensus 7 fF~~~~di~i~~~~~e~Rk~v~~k--------------------~e~g~~e-----~~~lf~dgEtv~G~V~l~lk~gkk 61 (301)
T KOG3063|consen 7 FFKPSIDIEILFDNEESRKQVDMK--------------------TEDGKKE-----KHPLFYDGETVSGKVNLRLKDGKK 61 (301)
T ss_pred ccCCCeeEEEEEcCchhheecccc--------------------ccCCcee-----eeeeEecCCeeeeEEEEEEcCCcc
Confidence 347889999999998776544322 1233322 123466788887666554 3344
Q ss_pred eeeeeeEEEEEEEEEEEe-ccceeeeeEEEEeeeecCccCCCCccceeeeeEecCCC-CCCCcCCCceEEEEEEEEEEEe
Q psy10650 312 ITVKSTKAALTETIQYLA-RNKVLESETRELASLTRGKIKPGERDDWTNQQLYVPPL-PPTNLRGCHLIKIQYDVFFIVD 389 (446)
Q Consensus 312 ~~I~~i~v~Liq~v~y~a-~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~i-~PT~l~~~~iI~V~Y~L~V~v~ 389 (446)
..-.+|++.++..+...- +|+.. ... ++...=-.||+-..-+..+|..+.+ -|=-...+.-+++.|+|+|++.
T Consensus 62 leH~GikiefiGqIe~~~drgn~~-eF~----~lv~eLa~pGel~~~~~fpFeF~~vekpyEsY~G~NV~lrY~lkvTv~ 136 (301)
T KOG3063|consen 62 LEHQGIKIEFIGQIEMYYDRGNFH-EFT----SLVRELARPGELTQSQSFPFEFPHVEKPYESYIGKNVRLRYFLKVTVS 136 (301)
T ss_pred cccCceEEEEEEEEEEEecCCcHH-HHH----HHHHhhcCCcceeecccCCccccccccchhhhcCcceEEEEEEEEEEE
Confidence 566789999998776544 44321 100 1111112355544434566777763 2311125777999999999985
Q ss_pred c
Q psy10650 390 P 390 (446)
Q Consensus 390 ~ 390 (446)
-
T Consensus 137 R 137 (301)
T KOG3063|consen 137 R 137 (301)
T ss_pred e
Confidence 4
No 39
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=58.61 E-value=75 Score=25.26 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=46.1
Q ss_pred EEEeccceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceeeeeEEEEeeeecCccCCCCccceeeeeEecC
Q psy10650 286 RVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLESETRELASLTRGKIKPGERDDWTNQQLYVP 365 (446)
Q Consensus 286 ~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP 365 (446)
..........+|+.+.|++.|.|........+.+.|. ..+... ....| ..+.+|+..++ ...+..|
T Consensus 7 ~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~------~~~~~~--~~~~i-----~~L~~g~~~~v-~~~~~~~ 72 (101)
T PF07705_consen 7 SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLY------LDGNSV--STVTI-----PSLAPGESETV-TFTWTPP 72 (101)
T ss_dssp -EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEE------ETTEEE--EEEEE-----SEB-TTEEEEE-EEEEE-S
T ss_pred EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEE------ECCcee--ccEEE-----CCcCCCcEEEE-EEEEEeC
Confidence 3455556678999999999999987776777666643 332221 11222 56778877655 4444444
Q ss_pred CCCCCCcCCCceEEEEEEEEEEEecCC
Q psy10650 366 PLPPTNLRGCHLIKIQYDVFFIVDPKS 392 (446)
Q Consensus 366 ~i~PT~l~~~~iI~V~Y~L~V~v~~~~ 392 (446)
.+ =.|.|.+.++...
T Consensus 73 --~~----------G~~~i~~~iD~~n 87 (101)
T PF07705_consen 73 --SP----------GSYTIRVVIDPDN 87 (101)
T ss_dssp --S-----------CEEEEEEEESTTT
T ss_pred --CC----------CeEEEEEEEeeCC
Confidence 11 1466777776643
No 40
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=57.72 E-value=20 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.4
Q ss_pred eccceecCCCeEEEEEEEeeccceeeeeeEE
Q psy10650 289 LDRGGYVPGETIIINATVYNRSKITVKSTKA 319 (446)
Q Consensus 289 l~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v 319 (446)
.++....+||.|..++.+.|........+.+
T Consensus 3 ~d~~~~~~Gd~v~Yti~v~N~g~~~a~~v~v 33 (53)
T TIGR01451 3 VDKTVATIGDTITYTITVTNNGNVPATNVVV 33 (53)
T ss_pred cCccccCCCCEEEEEEEEEECCCCceEeEEE
Confidence 4566778999999999999988777655433
No 41
>KOG1144|consensus
Probab=57.17 E-value=6.8 Score=44.01 Aligned_cols=10 Identities=10% Similarity=-0.154 Sum_probs=4.5
Q ss_pred EEEEEecCCCC
Q psy10650 384 VFFIVDPKSIE 394 (446)
Q Consensus 384 L~V~v~~~~~~ 394 (446)
|.|.+ +.|+.
T Consensus 705 lEVKv-ieG~G 714 (1064)
T KOG1144|consen 705 LEVKV-IEGHG 714 (1064)
T ss_pred EEEEe-ecCCC
Confidence 44444 34543
No 42
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=56.85 E-value=1.1e+02 Score=30.01 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=27.6
Q ss_pred ccCceEEEEEEEEcCCcceeEeeeceeeecc
Q psy10650 234 VPGETIIINATVYNRSKITVKSTKAALTEQP 264 (446)
Q Consensus 234 vPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~ 264 (446)
.-||+-...+.|+|.|+..|+.+.++...++
T Consensus 11 ylGEtF~~~l~~~N~s~~~v~~v~ikvemqT 41 (249)
T PF06159_consen 11 YLGETFSCYLSVNNDSNKPVRNVRIKVEMQT 41 (249)
T ss_pred eecCCEEEEEEeecCCCCceEEeEEEEEEeC
Confidence 3499999999999999999999999887764
No 43
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=55.06 E-value=41 Score=26.15 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.7
Q ss_pred CceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEE
Q psy10650 281 GPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 319 (446)
Q Consensus 281 G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v 319 (446)
..+.+.-+.+.....+||.|..++.+.|........+.+
T Consensus 24 ~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v 62 (76)
T PF01345_consen 24 PDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVV 62 (76)
T ss_pred CCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEE
Confidence 345666778888999999999999999988887766544
No 44
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=55.00 E-value=19 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.239 Sum_probs=26.4
Q ss_pred ecCCCeEEEEEEEeeccceeeeeeEEEEEEE
Q psy10650 294 YVPGETIIINATVYNRSKITVKSTKAALTET 324 (446)
Q Consensus 294 Y~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~ 324 (446)
...||+|+|++.+.|....++....+.|.+-
T Consensus 9 aK~Ge~I~ltVt~kda~G~pv~n~~f~l~r~ 39 (47)
T PF05688_consen 9 AKVGETIPLTVTVKDANGNPVPNAPFTLTRG 39 (47)
T ss_pred eecCCeEEEEEEEECCCCCCcCCceEEEEec
Confidence 3579999999999999889998888877764
No 45
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=54.22 E-value=21 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.8
Q ss_pred EcccccccCceEEEEEEEEcCCcceeEeeece
Q psy10650 228 LDRGGYVPGETIIINATVYNRSKITVKSTKAA 259 (446)
Q Consensus 228 lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~ 259 (446)
.++.-..|||.|..++.|.|........+.+.
T Consensus 3 ~d~~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~ 34 (53)
T TIGR01451 3 VDKTVATIGDTITYTITVTNNGNVPATNVVVT 34 (53)
T ss_pred cCccccCCCCEEEEEEEEEECCCCceEeEEEE
Confidence 35566789999999999999998887765443
No 46
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=53.92 E-value=15 Score=26.70 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=24.5
Q ss_pred CceEEEEEEEEcCCcceeEeeeceeeec
Q psy10650 236 GETIIINATVYNRSKITVKSTKAALTEQ 263 (446)
Q Consensus 236 GE~I~v~v~I~N~S~k~ik~i~~~L~q~ 263 (446)
||+|+++|.+.|.....+-...+.|.+-
T Consensus 12 Ge~I~ltVt~kda~G~pv~n~~f~l~r~ 39 (47)
T PF05688_consen 12 GETIPLTVTVKDANGNPVPNAPFTLTRG 39 (47)
T ss_pred CCeEEEEEEEECCCCCCcCCceEEEEec
Confidence 9999999999999999988877777653
No 47
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=52.40 E-value=1.3e+02 Score=24.57 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEecc-ceecCC
Q psy10650 219 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDR-GGYVPG 297 (446)
Q Consensus 219 sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r-~gY~pG 297 (446)
+.-|.+.+++.+. + ..+.+.+.+.|.|..+|..+.+.+.-- + ...+.+.... ....||
T Consensus 4 ~~~l~I~~~~~~~---~-~~~~i~~~~~N~s~~~it~f~~~~avp---------------k--~~~l~l~~~s~~~l~p~ 62 (104)
T smart00809 4 KNGLQIGFKFERR---P-GLIRITLTFTNKSPSPITNFSFQAAVP---------------K--SLKLQLQPPSSPTLPPG 62 (104)
T ss_pred CCCEEEEEEEEcC---C-CeEEEEEEEEeCCCCeeeeEEEEEEcc---------------c--ceEEEEcCCCCCccCCC
Confidence 3446777777665 3 457899999999999999988766431 1 2333343332 356788
Q ss_pred CeEEEEEEEeeccceeeeeeEEEEEEEEEEEecc
Q psy10650 298 ETIIINATVYNRSKITVKSTKAALTETIQYLARN 331 (446)
Q Consensus 298 E~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~ 331 (446)
+.+.-.+.|.|..... +.+.-.+.|...+
T Consensus 63 ~~i~q~~~i~~~~~~~-----~~~~~~vsy~~~g 91 (104)
T smart00809 63 GQITQVLKVENPGKFP-----LRLRLRLSYLLGG 91 (104)
T ss_pred CCEEEEEEEECCCCCC-----EEEEEEEEEEECC
Confidence 9888888888855432 3344455676654
No 48
>KOG4043|consensus
Probab=50.28 E-value=11 Score=34.57 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=3.7
Q ss_pred hhhcccccC
Q psy10650 14 KEVGGISRG 22 (446)
Q Consensus 14 ~~~~~~~~~ 22 (446)
|-+.++-.|
T Consensus 149 Khkdg~t~g 157 (214)
T KOG4043|consen 149 KHKDGRTRG 157 (214)
T ss_pred hhhcceecc
Confidence 334444443
No 49
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=48.94 E-value=1.7e+02 Score=24.91 Aligned_cols=50 Identities=18% Similarity=0.388 Sum_probs=36.6
Q ss_pred cCccCCCCccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEE
Q psy10650 346 RGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIML 405 (446)
Q Consensus 346 ~~~V~~g~~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiI 405 (446)
.+++.+|....+ ...+.||...|.. .|.+++.+.-..-..-.++++|+.|
T Consensus 85 ~CPi~~G~~~~~-~~~~~i~~~~p~~---------~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 85 SCPIKAGEYYTY-TYTIPIPKIYPPG---------KYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp TSTBTTTEEEEE-EEEEEESTTSSSE---------EEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred cCccCCCcEEEE-EEEEEcccceeeE---------EEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 678999988788 8888998876652 7888887755432234678888765
No 50
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=47.40 E-value=2.5e+02 Score=26.50 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=49.4
Q ss_pred cceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEec----cceeeeeEEEEeeeecCccCCCCccceeeeeEecCC
Q psy10650 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLAR----NKVLESETRELASLTRGKIKPGERDDWTNQQLYVPP 366 (446)
Q Consensus 291 r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~----~~~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~IP~ 366 (446)
+.-..|||+..+...+.|.|++++...-+ |.-. +.... +..+.+- ......||++.+. .+.|-|=+
T Consensus 87 ~v~V~pGE~~~~~y~a~N~sd~~i~g~A~-------~nV~P~~a~~YF~-KieCFCF-~eQ~L~pgE~~~m-PV~F~IDP 156 (188)
T PRK05089 87 SVDVHPGELNLVFYEAENLSDRPIVGQAI-------PSVTPGQAGAYFN-KIECFCF-TQQTLQPGETREM-PVVFYVDP 156 (188)
T ss_pred EEEEcCCCeEEEEEEEECCCCCcEEEEEe-------cccCHHHHhhhcc-ceeeecc-cCcccCCCCeEec-CEEEEECC
Confidence 33456999999999999999998865333 2111 00000 1111111 1125678988877 67777755
Q ss_pred CCCCCcCCCceEEEEEEEE
Q psy10650 367 LPPTNLRGCHLIKIQYDVF 385 (446)
Q Consensus 367 i~PT~l~~~~iI~V~Y~L~ 385 (446)
..|. +..-|+++|.+-
T Consensus 157 ~i~~---dv~~iTLSYTff 172 (188)
T PRK05089 157 DLPK---DVKTITLSYTFF 172 (188)
T ss_pred Cccc---ccCEEEEEEEEE
Confidence 4343 256789999763
No 51
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.24 E-value=19 Score=38.86 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=46.6
Q ss_pred eeeeeEecCCceeEEEEeccceecCCC-eEEEEEEEeeccceeeeeeEEEEEEEEEEEeccc
Q psy10650 272 KLGVACVSSGPVLCRVSLDRGGYVPGE-TIIINATVYNRSKITVKSTKAALTETIQYLARNK 332 (446)
Q Consensus 272 ~~~~~c~~~G~v~l~~sl~r~gY~pGE-~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~ 332 (446)
-++|+||...-.++.+++.+.-|.++| .|-|++.+.|.-..++.. |.|-|...|=-.+.
T Consensus 355 w~~c~CCppn~ar~~as~g~yiY~~~~d~lyvnLy~~S~~~l~~~~--v~irqet~yPw~g~ 414 (589)
T COG3533 355 WFSCWCCPPNGARSVASIGDYIYTRADDALYVNLYIASTADLPGDD--VQIRQETNYPWSGQ 414 (589)
T ss_pred cccCCCCCCcHhhhhhhccceEEccCCCEEEEEEeecccccccccc--eEEEeccCCCCcCe
Confidence 468899999999999999999999665 899999988876666655 77777777644443
No 52
>KOG2812|consensus
Probab=45.52 E-value=19 Score=37.00 Aligned_cols=6 Identities=50% Similarity=0.927 Sum_probs=2.9
Q ss_pred cCCeee
Q psy10650 88 LSPGIH 93 (446)
Q Consensus 88 Lp~G~H 93 (446)
.+||.|
T Consensus 307 e~~~s~ 312 (426)
T KOG2812|consen 307 EAPGSH 312 (426)
T ss_pred CCCCCC
Confidence 345544
No 53
>KOG2775|consensus
Probab=43.31 E-value=7.9 Score=38.97 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.7
Q ss_pred EEEecc
Q psy10650 326 QYLARN 331 (446)
Q Consensus 326 ~y~a~~ 331 (446)
+|.+.|
T Consensus 284 TFgSTG 289 (397)
T KOG2775|consen 284 TFGSTG 289 (397)
T ss_pred eeccCC
Confidence 444443
No 54
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=42.65 E-value=83 Score=32.72 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=25.5
Q ss_pred EEEEEccccc-ccCceEEEEEEEEcCCcceeEe
Q psy10650 224 CRVSLDRGGY-VPGETIIINATVYNRSKITVKS 255 (446)
Q Consensus 224 l~v~lpr~gY-vPGE~I~v~v~I~N~S~k~ik~ 255 (446)
+++.+.+.-| +||-++.++++|+|++...++-
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~pv~L 281 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMTLTVTNNGDSPVRL 281 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEESSS-BEE
T ss_pred eEEEEeccEEecCCcEEEEEEEEEcCCCCceEe
Confidence 6666666666 9999999999999999877653
No 55
>KOG3925|consensus
Probab=42.28 E-value=37 Score=35.02 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=8.2
Q ss_pred EEEecEEEEeecCC
Q psy10650 398 KLQLPIMLATYPFR 411 (446)
Q Consensus 398 ~v~lPIiIGtvPl~ 411 (446)
.--+++.+++.|+.
T Consensus 330 ~~~f~~~~~~lp~p 343 (371)
T KOG3925|consen 330 EDPFDVFFNQLPIP 343 (371)
T ss_pred CCchhhhhccCCCc
Confidence 33456666666655
No 56
>KOG1144|consensus
Probab=42.24 E-value=21 Score=40.38 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.8
Q ss_pred CCCCCc
Q psy10650 200 LSQPFD 205 (446)
Q Consensus 200 ~~~p~~ 205 (446)
|+.|++
T Consensus 473 lRSPIc 478 (1064)
T KOG1144|consen 473 LRSPIC 478 (1064)
T ss_pred cCCceE
Confidence 444543
No 57
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.22 E-value=1.1e+02 Score=31.78 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=24.6
Q ss_pred EEEEEEcc-cccccCceEEEEEEEEcCCcceeE
Q psy10650 223 LCRVSLDR-GGYVPGETIIINATVYNRSKITVK 254 (446)
Q Consensus 223 ~l~v~lpr-~gYvPGE~I~v~v~I~N~S~k~ik 254 (446)
.+++.+-+ +-+|||-++.++++|+|+++..|+
T Consensus 267 ~V~~kv~~a~Y~VPGR~l~~~~~VTN~g~~~vr 299 (399)
T TIGR03079 267 PVSINVTKANYDVPGRALRVTMEITNNGDQVIS 299 (399)
T ss_pred ceEEEEeccEEecCCcEEEEEEEEEcCCCCceE
Confidence 34444444 445999999999999999988765
No 58
>KOG2717|consensus
Probab=40.29 E-value=3.7e+02 Score=26.43 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=61.1
Q ss_pred cceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEeccceee-------------eeEEEEeeeecCccCCCCccce
Q psy10650 291 RGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLARNKVLE-------------SETRELASLTRGKIKPGERDDW 357 (446)
Q Consensus 291 r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a~~~~~~-------------~~~~~V~~~~~~~V~~g~~~~~ 357 (446)
...|..||.+.=.+.|.-..+..-..|.+.+-..+...-.+.+-- .-..++.-...+.+++|.+..=
T Consensus 13 nriy~s~e~l~G~vvi~sa~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK~p~G~tEip 92 (313)
T KOG2717|consen 13 NRIYRSSEPLEGKVVIKSATSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGKIPPGTTEIP 92 (313)
T ss_pred cceeecCCccceeEEEEeccccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCCCCCCceeee
Confidence 345666666555555554444444555555555544433322100 0111232234578888875321
Q ss_pred eeeeEecCCC----CCCCcCCCceEEEEEEEEEEEecCCCCCCeEEEecEEEEeecC
Q psy10650 358 TNQQLYVPPL----PPTNLRGCHLIKIQYDVFFIVDPKSIEKPVKLQLPIMLATYPF 410 (446)
Q Consensus 358 ~~~~L~IP~i----~PT~l~~~~iI~V~Y~L~V~v~~~~~~~~l~v~lPIiIGtvPl 410 (446)
.+.+|..|.- --|+ .+-.|.|+|.|.-.+.-+-+++.+.--+-++|-+-|.
T Consensus 93 FelpL~~kge~~~lYETy--HGvfiNiqY~LtcdikR~~L~K~ltkt~eFiv~s~pv 147 (313)
T KOG2717|consen 93 FELPLREKGEGEKLYETY--HGVFINIQYLLTCDIKRGYLHKPLTKTMEFIVESGPV 147 (313)
T ss_pred eeeeeccCCCccEeeeee--cceEEEEEEEEEEecccchhcCchhhhheeeeccCCc
Confidence 1334444332 2232 4678999998877765554566666656666655554
No 59
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.45 E-value=2e+02 Score=22.72 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=25.7
Q ss_pred EEEEcccccccCceEEEEEEEEcCCcceeEeeeceee
Q psy10650 225 RVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALT 261 (446)
Q Consensus 225 ~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~ 261 (446)
.+.....-..+|+.+.+++.|.|.-......+.+.|.
T Consensus 7 ~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~ 43 (101)
T PF07705_consen 7 SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLY 43 (101)
T ss_dssp -EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEE
T ss_pred EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEE
Confidence 3455566678899999999999997777777666653
No 60
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=37.98 E-value=73 Score=27.67 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.2
Q ss_pred ecCCCeEEEEEEEeeccceeeeeeEEEEEE
Q psy10650 294 YVPGETIIINATVYNRSKITVKSTKAALTE 323 (446)
Q Consensus 294 Y~pGE~I~i~v~I~N~S~~~I~~i~v~Liq 323 (446)
..||++..+.+.|.|.|+..++ +.+.+-.
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~t-v~v~~~~ 51 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEIT-VKVSANT 51 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEE-EEEEEee
Confidence 4599999999999999998775 5555554
No 61
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=35.90 E-value=2.3e+02 Score=23.92 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=26.4
Q ss_pred ecCCceeEEEEeccceecCCCeEEEEEEEeeccceee
Q psy10650 278 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITV 314 (446)
Q Consensus 278 ~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I 314 (446)
+.+|-.++-+.=.+....+||++++++..+|....++
T Consensus 73 l~pgg~HlmL~g~~~~l~~G~~v~ltL~f~~gg~v~v 109 (110)
T PF04314_consen 73 LKPGGYHLMLMGLKRPLKPGDTVPLTLTFEDGGKVTV 109 (110)
T ss_dssp E-CCCCEEEEECESS-B-TTEEEEEEEEETTTEEEEE
T ss_pred ecCCCEEEEEeCCcccCCCCCEEEEEEEECCCCEEEe
Confidence 4566677777767778899999999999988766544
No 62
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=35.69 E-value=71 Score=25.87 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCcEEEEEEEcccccccCceEEEEEEEEcCCcceeE
Q psy10650 219 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVK 254 (446)
Q Consensus 219 sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik 254 (446)
.-++.+.+.+|+. ...||.+.+.+.|.|.....+.
T Consensus 53 ~~p~~i~~~lP~~-l~~GD~~~i~v~v~N~~~~~~~ 87 (92)
T PF00207_consen 53 FKPFFIQLNLPRS-LRRGDQIQIPVTVFNYTDKDQE 87 (92)
T ss_dssp B-SEEEEEE--SE-EETTSEEEEEEEEEE-SSS-EE
T ss_pred EeeEEEEcCCCcE-EecCCEEEEEEEEEeCCCCCEE
Confidence 3467789999976 4799999999999999876643
No 63
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.18 E-value=63 Score=34.99 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=41.6
Q ss_pred EeEeeeeecCCcEEEEEEEcccccccC-ceEEEEEEEEcCCcceeEeeeceeeecccc
Q psy10650 210 HKLGVACVSSGPVLCRVSLDRGGYVPG-ETIIINATVYNRSKITVKSTKAALTEQPFD 266 (446)
Q Consensus 210 k~~~~~c~~sG~v~l~v~lpr~gYvPG-E~I~v~v~I~N~S~k~ik~i~~~L~q~~~~ 266 (446)
+-++||||.---..+-+++...-|.++ +.|.|++-+.|.-..++.. +.+.|.+-+
T Consensus 354 ~w~~c~CCppn~ar~~as~g~yiY~~~~d~lyvnLy~~S~~~l~~~~--v~irqet~y 409 (589)
T COG3533 354 KWFSCWCCPPNGARSVASIGDYIYTRADDALYVNLYIASTADLPGDD--VQIRQETNY 409 (589)
T ss_pred ccccCCCCCCcHhhhhhhccceEEccCCCEEEEEEeecccccccccc--eEEEeccCC
Confidence 457888886555667788999999876 6999999999887777776 666665433
No 64
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=34.95 E-value=2.7e+02 Score=23.29 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=26.8
Q ss_pred cCccCCCCccceeeeeEecCCCCCCCcCCCceEEEEEEEEEEEecC
Q psy10650 346 RGKIKPGERDDWTNQQLYVPPLPPTNLRGCHLIKIQYDVFFIVDPK 391 (446)
Q Consensus 346 ~~~V~~g~~~~~~~~~L~IP~i~PT~l~~~~iI~V~Y~L~V~v~~~ 391 (446)
.+++.+|....+ ...|.||...|. +.|.+++.+.-.
T Consensus 71 ~CPl~~G~~~~~-~~~~~v~~~~P~---------~~~~v~~~l~d~ 106 (118)
T smart00737 71 KCPIEKGETVNY-TNSLTVPGIFPP---------GKYTVKWELTDE 106 (118)
T ss_pred CCCCCCCeeEEE-EEeeEccccCCC---------eEEEEEEEEEcC
Confidence 588999998877 677888875553 378888887543
No 65
>PF14181 YqfQ: YqfQ-like protein
Probab=34.76 E-value=4.9 Score=36.89 Aligned_cols=6 Identities=50% Similarity=0.806 Sum_probs=2.2
Q ss_pred hhhhhh
Q psy10650 10 EDQEKE 15 (446)
Q Consensus 10 ~~~~~~ 15 (446)
||+++|
T Consensus 103 e~~~~e 108 (161)
T PF14181_consen 103 EEAEEE 108 (161)
T ss_pred cccccc
Confidence 333333
No 66
>PF09113 N-glycanase_C: Peptide-N-glycosidase F, C terminal; InterPro: IPR015197 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 1PNF_A 1PNG_A 1PGS_A 3KS7_D 3PMS_A.
Probab=34.17 E-value=49 Score=29.71 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=14.1
Q ss_pred EcccccccCceE-EEEEEEEcCC
Q psy10650 228 LDRGGYVPGETI-IINATVYNRS 249 (446)
Q Consensus 228 lpr~gYvPGE~I-~v~v~I~N~S 249 (446)
++|.|+|||+.| +..++|.+..
T Consensus 84 ~~Rs~WCPG~~v~p~~~dl~~~~ 106 (141)
T PF09113_consen 84 YSRSNWCPGMVVDPWRIDLTDAV 106 (141)
T ss_dssp S-BSS--TTEEE--EEEEEE-GG
T ss_pred cCCCCCCCCCCCCceEecccccc
Confidence 899999999988 7888877753
No 67
>KOG0526|consensus
Probab=33.95 E-value=13 Score=40.06 Aligned_cols=6 Identities=17% Similarity=0.052 Sum_probs=2.4
Q ss_pred ccccee
Q psy10650 59 KLLHNC 64 (446)
Q Consensus 59 ~~~~~~ 64 (446)
||-...
T Consensus 537 kra~sa 542 (615)
T KOG0526|consen 537 KRATSA 542 (615)
T ss_pred ccchhH
Confidence 444333
No 68
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=32.95 E-value=2.9e+02 Score=22.98 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=59.0
Q ss_pred eecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEec-ccee
Q psy10650 216 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLD-RGGY 294 (446)
Q Consensus 216 c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~-r~gY 294 (446)
.+.+.-+.+.+.+.+ -.-+..+.+.+.+.|.+...|..+.+.+.- ...+.+.+.-. ....
T Consensus 5 ~ye~~~l~I~~~~~~--~~~~~~~~i~~~f~N~s~~~it~f~~q~av-----------------pk~~~l~l~~~s~~~i 65 (115)
T PF02883_consen 5 LYEDNGLQIGFKSEK--SPNPNQGRIKLTFGNKSSQPITNFSFQAAV-----------------PKSFKLQLQPPSSSTI 65 (115)
T ss_dssp EEEETTEEEEEEEEE--CCETTEEEEEEEEEE-SSS-BEEEEEEEEE-----------------BTTSEEEEEESS-SSB
T ss_pred EEeCCCEEEEEEEEe--cCCCCEEEEEEEEEECCCCCcceEEEEEEe-----------------ccccEEEEeCCCCCee
Confidence 345566777777776 344678999999999999999998776532 12344555444 4456
Q ss_pred cCCCeEEEEEEEee-----ccceeeeeeEEEEEEEEEEEeccc
Q psy10650 295 VPGETIIINATVYN-----RSKITVKSTKAALTETIQYLARNK 332 (446)
Q Consensus 295 ~pGE~I~i~v~I~N-----~S~~~I~~i~v~Liq~v~y~a~~~ 332 (446)
.||..|.-.+.|.| .....+ .+.=.+.|...+.
T Consensus 66 ~p~~~i~Q~~~v~~~~~~~~~~~~l-----~~~~~vsy~~~g~ 103 (115)
T PF02883_consen 66 PPGQQITQVIKVENSPFSEPTPKPL-----KPRLRVSYNVGGQ 103 (115)
T ss_dssp -TTTEEEEEEEEEESS-BSTTSSTT-----EEEEEEEEEETTE
T ss_pred CCCCeEEEEEEEEEeecccCCCCCc-----CeEEEEEEEECCE
Confidence 68999999999998 222222 2333467777765
No 69
>KOG3045|consensus
Probab=32.12 E-value=25 Score=35.03 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.3
Q ss_pred EEEEEEEEEEE
Q psy10650 378 IKIQYDVFFIV 388 (446)
Q Consensus 378 I~V~Y~L~V~v 388 (446)
+...|+..+.+
T Consensus 291 ~~n~~F~lfef 301 (325)
T KOG3045|consen 291 VSNKYFTLFEF 301 (325)
T ss_pred hhcceEEEEEE
Confidence 34455555444
No 70
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=31.53 E-value=2.3e+02 Score=25.50 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=43.7
Q ss_pred CCcEEEEEEEcccccccCceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecCCC
Q psy10650 219 SGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVPGE 298 (446)
Q Consensus 219 sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE 298 (446)
+.||-+++.+--..| .|.+.+.|-|++...+..+.+.|.- .|.+++.-.....-..|++
T Consensus 55 sDPvYaEA~v~v~q~----DIvLDvllvNqT~~tLqNl~vElat-----------------~gdLklve~p~~~tL~P~~ 113 (140)
T PF07718_consen 55 SDPVYAEAYVTVHQY----DIVLDVLLVNQTNETLQNLTVELAT-----------------LGDLKLVERPQPITLAPHG 113 (140)
T ss_pred CCCeEEEEEEEEEee----eEEEEEEEEeCChhhhhcEEEEEEe-----------------cCCcEEccCCCceeeCCCc
Confidence 566666666554444 7899999999999999999888754 2334433333333445666
Q ss_pred eEEEEEEE
Q psy10650 299 TIIINATV 306 (446)
Q Consensus 299 ~I~i~v~I 306 (446)
.+.+.+.|
T Consensus 114 ~~~i~~~i 121 (140)
T PF07718_consen 114 FARIKATI 121 (140)
T ss_pred EEEEEEEE
Confidence 65555543
No 71
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=31.06 E-value=52 Score=35.09 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCCcccCCe-eeEeeeEeecCCC-CCCccccCCC--eeecC--eEEEEeEEEecCC-CCCce-----------------E
Q psy10650 83 QAPVLLSPG-IHSFPFKLGLPLG-LPSTFLGQAP--VLLSP--GIHSFPFKLGLPL-GLPST-----------------F 138 (446)
Q Consensus 83 ~~~~~Lp~G-~H~fpF~~~LP~~-LPsSfeg~~g--~~l~~--G~~~~pf~f~LP~-~lP~S-----------------f 138 (446)
.....|.|| +|...|.|.||.. |+++-..... ..+++ |.-.+.|.-.+.. .+-.. |
T Consensus 251 ~~~r~l~p~~~Yk~fF~FkiP~~LLd~~C~h~~~~H~~lPPs~G~~k~~~~~~~~~i~~n~~lGyg~l~~~gspil~~D~ 330 (438)
T PF04425_consen 251 PNKRILEPGVKYKKFFTFKIPEQLLDSACKHNLSSHCLLPPSLGIDKNEFNGKYSSIKINKALGYGHLGTKGSPILTNDF 330 (438)
T ss_pred CCCceecCCCeEeceeEEeCCchhccccccCcccccCcCCCCCCcChhhccchhhhhhcccccCccccccCCCcceeccc
Q ss_pred EeecccEEEEEEEEE
Q psy10650 139 LGKHGWVQYFCKAAL 153 (446)
Q Consensus 139 ~~~~g~IrY~i~~~i 153 (446)
-...-+|.|.|.|.+
T Consensus 331 s~~d~SIsY~V~AR~ 345 (438)
T PF04425_consen 331 SFDDTSISYSVEARF 345 (438)
T ss_pred CCCCceEEEEEEEEE
No 72
>PF00963 Cohesin: Cohesin domain; InterPro: IPR002102 Cohesin domains interact with a complementary domain, termed the dockerin domain (see IPR002105 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The scaffoldin component of the cellulolytic bacterium Clostridium thermocellum is a non-hydrolytic protein which organises the hydrolytic enzymes in a large complex, called the cellulosome. Scaffoldin comprises a series of functional domains, amongst which is a single cellulose-binding domain and nine cohesin domains which are responsible for integrating the individual enzymatic subunits into the complex.; GO: 0030246 carbohydrate binding, 0000272 polysaccharide catabolic process; PDB: 2BM3_A 3P0D_I 3KCP_A 2B59_A 3L8Q_B 3FNK_C 3GHP_B 2CCL_A 1ANU_A 1OHZ_A ....
Probab=30.59 E-value=1.1e+02 Score=26.55 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.3
Q ss_pred EEEEEcccccccCceEEEEEEEEcCCcceeEeeeceee
Q psy10650 224 CRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALT 261 (446)
Q Consensus 224 l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~~L~ 261 (446)
++++++..---|||++.|.+.++|-+.. |..+.+.|.
T Consensus 1 v~l~~~~~~a~~G~tv~V~V~v~~~~~~-i~~~~~~l~ 37 (141)
T PF00963_consen 1 VTLSVDSVSAKPGETVTVPVNVSNVSNS-IAGMQFTLS 37 (141)
T ss_dssp EEEEESECEE-TTSEEEEEEEEESCTTT-EEEEEEEEE
T ss_pred CEEEeCCceECCCCEEEEEEEEEcCCCc-EEEEEEEEE
Confidence 4567777777899999999999999765 666666654
No 73
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=29.58 E-value=75 Score=27.62 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=23.0
Q ss_pred EEEEEcccccccCceEEEEEEEEcCCcceeEe
Q psy10650 224 CRVSLDRGGYVPGETIIINATVYNRSKITVKS 255 (446)
Q Consensus 224 l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~ 255 (446)
..+.++...|.|||.+.|++.-.+. ...+.
T Consensus 21 y~i~~~~~~y~pG~~~~Vtl~~~~~--~~F~G 50 (135)
T cd08544 21 YSITISGNSYVPGETYTVTLSGSSP--SPFRG 50 (135)
T ss_pred EEEEeCCCEECCCCEEEEEEECCCC--CceeE
Confidence 4566777799999999999998775 34444
No 74
>PF02014 Reeler: Reeler domain Schematic picture including Reeler domain; InterPro: IPR002861 Extracellular matrix (ECM) proteins play an important role in early cortical development, specifically in the formation of neural connections and in controlling the cyto-architecture of the central nervous system. The product of the reeler gene in mouse is reelin,a large extracellular protein secreted by pioneer neurons that coordinates cell positioning during neurodevelopment []. F-spondin and mindin are a family of matrix-attached adhesion molecules that share structural similarities and overlapping domains of expression. Both F-spondin and mindin promote adhesion and outgrowth of hippocampal embryonic neurons and bind to a putative receptor(s) expressed on both hippocampal and sensory neurons []. This domain of unknown function is found at the N terminus of reelin and F-spondin.; PDB: 2ZOT_B 2ZOU_B 3COO_A.
Probab=29.27 E-value=83 Score=27.30 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=22.3
Q ss_pred EEEEEcccccccCceEEEEEEEEcCCcceeEeeec
Q psy10650 224 CRVSLDRGGYVPGETIIINATVYNRSKITVKSTKA 258 (446)
Q Consensus 224 l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik~i~~ 258 (446)
..+.++...|.||+.+.|++ .+.+....++.-+
T Consensus 21 y~i~~~~~~y~pg~~~~Vtl--~~~~~~~F~GFll 53 (132)
T PF02014_consen 21 YSISVSPSSYEPGQTYTVTL--SSSGSSSFRGFLL 53 (132)
T ss_dssp EEEEET-SSB-TTBEEEEEE--EETTTEEBSEEEE
T ss_pred EEEEeCCCeEcCCCEEEEEE--ECCCCCceeEEEE
Confidence 34566699999999999999 5556666665433
No 75
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=28.71 E-value=3e+02 Score=21.91 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred cCCcEEEEEEEc----ccccccCceEEEEEEEEc
Q psy10650 218 SSGPVLCRVSLD----RGGYVPGETIIINATVYN 247 (446)
Q Consensus 218 ~sG~v~l~v~lp----r~gYvPGE~I~v~v~I~N 247 (446)
+.+...+++.++ ...|.|||-|.|.+.+++
T Consensus 11 s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~ 44 (99)
T PF00970_consen 11 SPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPING 44 (99)
T ss_dssp SSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETT
T ss_pred CCCeEEEEEEECCCCcccccCcceEEEEEEccCC
Confidence 445556777777 346999999999998443
No 76
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=28.19 E-value=68 Score=27.17 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=28.7
Q ss_pred ecCCcEEEEEEEcccccccCceEEEEEEEEcCCccee
Q psy10650 217 VSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITV 253 (446)
Q Consensus 217 ~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~i 253 (446)
+..|-.|+.+.=.+.-..+||+|++++.++|.....+
T Consensus 73 l~pgg~HlmL~g~~~~l~~G~~v~ltL~f~~gg~v~v 109 (110)
T PF04314_consen 73 LKPGGYHLMLMGLKRPLKPGDTVPLTLTFEDGGKVTV 109 (110)
T ss_dssp E-CCCCEEEEECESS-B-TTEEEEEEEEETTTEEEEE
T ss_pred ecCCCEEEEEeCCcccCCCCCEEEEEEEECCCCEEEe
Confidence 5667788888777888999999999999999876654
No 77
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=96 Score=28.20 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.9
Q ss_pred cccccCceEEEEEEEEcCCcceeEeee
Q psy10650 231 GGYVPGETIIINATVYNRSKITVKSTK 257 (446)
Q Consensus 231 ~gYvPGE~I~v~v~I~N~S~k~ik~i~ 257 (446)
....||+-...+...+|.|.+.|+.+.
T Consensus 65 ~a~~PGdlLqyT~~~eNvs~rs~~gL~ 91 (176)
T COG4719 65 EAAAPGDLLQYTGRYENVSKRSLSGLV 91 (176)
T ss_pred cccCcchHHhhccccccccccccccee
Confidence 344599999999999999999998854
No 78
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=5.5e+02 Score=24.19 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=50.0
Q ss_pred ceecCCCeEEEEEEEeeccceeeeeeEEEEEEEEEEEe-ccc---eeeeeEEEEeeeecCccCCCCccceeeeeEec-CC
Q psy10650 292 GGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA-RNK---VLESETRELASLTRGKIKPGERDDWTNQQLYV-PP 366 (446)
Q Consensus 292 ~gY~pGE~I~i~v~I~N~S~~~I~~i~v~Liq~v~y~a-~~~---~~~~~~~~V~~~~~~~V~~g~~~~~~~~~L~I-P~ 366 (446)
....|||+..+-...+|.|.+++.+..+ |.- .+. ...+ ..+.+- ....+.||++.+. -..|-| |.
T Consensus 87 v~v~pGet~~~~y~a~N~sd~~itg~A~-------~nv~P~~Ag~YF~K-veCFCF-teq~L~pgE~vem-PV~FfVDpd 156 (195)
T COG3175 87 VYVRPGETNLIFYEAENLSDKPITGQAT-------YNVAPGQAGAYFNK-VECFCF-TEQTLKPGETVEM-PVVFFVDPD 156 (195)
T ss_pred eEeccCceEEEEEEEecCCCCCceeEEe-------cccChhHhhhheee-eeEEEe-eecccCCCCeEec-cEEEEECcc
Confidence 3345999999999999999999875332 211 111 1111 111111 1124678887766 555555 44
Q ss_pred C--CCCCcCCCceEEEEEEEEE
Q psy10650 367 L--PPTNLRGCHLIKIQYDVFF 386 (446)
Q Consensus 367 i--~PT~l~~~~iI~V~Y~L~V 386 (446)
+ .|- +.+-+-|.++|.+-=
T Consensus 157 ~~~dPe-~kdvk~iTLSYTFF~ 177 (195)
T COG3175 157 FADDPE-MKDVKTITLSYTFFP 177 (195)
T ss_pred cccCcc-cCCCCeEEEEEEEEE
Confidence 3 454 457778999997643
No 79
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=26.13 E-value=2e+02 Score=35.87 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=65.2
Q ss_pred cEEEEEEEcccccccCceEEEEEEEEcCCcc------------------eeEeeeceeeec-------------------
Q psy10650 221 PVLCRVSLDRGGYVPGETIIINATVYNRSKI------------------TVKSTKAALTEQ------------------- 263 (446)
Q Consensus 221 ~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k------------------~ik~i~~~L~q~------------------- 263 (446)
.+.+-+..||.-|.|||++.+.+-....-.. .+....+.+...
T Consensus 393 ~~k~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~ 472 (1621)
T COG2373 393 GLKVYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYT 472 (1621)
T ss_pred ceEEEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEE
Confidence 5788899999999999999887765554444 333333333211
Q ss_pred --ccc----ccccceeeeeEecCCceeEEEEeccceecCCCeEEEEEEEeeccceeeeeeEEE
Q psy10650 264 --PFD----CEIEHKLGVACVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAA 320 (446)
Q Consensus 264 --~~~----~~~~~~~~~~c~~~G~v~l~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~ 320 (446)
.+. ...+..+.+--+-...+.+.+++++..+.+|+.+.+++...+....+....++.
T Consensus 473 l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~~~~~g~~v~~~v~~~yL~GaPa~g~~~~ 535 (1621)
T COG2373 473 LELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTEWVPGKDVKIKVDLRYLYGAPAAGLTVQ 535 (1621)
T ss_pred EEEEeCCccceeeeeEEhhHhCCceEEEecccccccccCCCcEEEEEEEEecCCCcccCceee
Confidence 011 111122333334456677788888999999999999999999887766554444
No 80
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=24.98 E-value=81 Score=27.01 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=24.7
Q ss_pred cEEEEEEEcccccccCceEEEEEEEEcCCcc
Q psy10650 221 PVLCRVSLDRGGYVPGETIIINATVYNRSKI 251 (446)
Q Consensus 221 ~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k 251 (446)
...++++.++.-|.|||.+.+.++....|..
T Consensus 94 ~~~v~l~~~~~~~~Pg~~~~~~i~~~~~s~v 124 (136)
T PF07703_consen 94 ELKVELTASPDEYKPGEEVTLRIKAPPNSLV 124 (136)
T ss_dssp SSSEEEEESSSSBTTTSEEEEEEEESTTEEE
T ss_pred cceEEEEEecceeCCCCEEEEEEEeCCCCEE
Confidence 3557788899999999999999998555433
No 81
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=24.65 E-value=92 Score=28.42 Aligned_cols=9 Identities=0% Similarity=0.028 Sum_probs=4.2
Q ss_pred ccceeEEEE
Q psy10650 60 LLHNCYLYS 68 (446)
Q Consensus 60 ~~~~~~~~~ 68 (446)
.-.++|.-.
T Consensus 96 ~~~r~~Vld 104 (155)
T PF08496_consen 96 PKPRLFVLD 104 (155)
T ss_pred CCCeEEEEe
Confidence 334455544
No 82
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=24.52 E-value=3.4e+02 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=18.7
Q ss_pred CcccCCeeeEeeeEeecCCCCCCccccC
Q psy10650 85 PVLLSPGIHSFPFKLGLPLGLPSTFLGQ 112 (446)
Q Consensus 85 ~~~Lp~G~H~fpF~~~LP~~LPsSfeg~ 112 (446)
...||.|.. |+|.+|..-|..+...
T Consensus 65 ~~~iPGGt~---~~FD~ptSa~~~~kdq 89 (180)
T PF06483_consen 65 GQTIPGGTE---FEFDYPTSAPDNAKDQ 89 (180)
T ss_pred CcccCCccE---EEEccccCCccccccc
Confidence 446899965 8899999988766543
No 83
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=23.95 E-value=4.2e+02 Score=23.91 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=49.6
Q ss_pred cCCcEEEEEEEccccccc-CceEEEEEEEEcCCcceeEeeeceeeeccccccccceeeeeEecCCceeEEEEeccceecC
Q psy10650 218 SSGPVLCRVSLDRGGYVP-GETIIINATVYNRSKITVKSTKAALTEQPFDCEIEHKLGVACVSSGPVLCRVSLDRGGYVP 296 (446)
Q Consensus 218 ~sG~v~l~v~lpr~gYvP-GE~I~v~v~I~N~S~k~ik~i~~~L~q~~~~~~~~~~~~~~c~~~G~v~l~~sl~r~gY~p 296 (446)
..+=+.+.-...|.-+.. ..-+.|.+.+.|.|...|+.|.+.=... .+-+.+..-..=...-|
T Consensus 65 ~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l----------------~~g~~i~~F~~I~~L~p 128 (145)
T PF14796_consen 65 NGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKL----------------PAGMRIHEFPEIESLEP 128 (145)
T ss_pred CCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCC----------------CCCcEeeccCcccccCC
Confidence 344478888888877754 4678999999999999999987653321 01122222222223568
Q ss_pred CCeEEEEEEEee
Q psy10650 297 GETIIINATVYN 308 (446)
Q Consensus 297 GE~I~i~v~I~N 308 (446)
|+.+.+.+-|+=
T Consensus 129 g~s~t~~lgIDF 140 (145)
T PF14796_consen 129 GASVTVSLGIDF 140 (145)
T ss_pred CCeEEEEEEEec
Confidence 998888887753
No 84
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=23.49 E-value=84 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.2
Q ss_pred cccCceEEEEEEEEcCCcceeE
Q psy10650 233 YVPGETIIINATVYNRSKITVK 254 (446)
Q Consensus 233 YvPGE~I~v~v~I~N~S~k~ik 254 (446)
.-|||...+.+.|.|.|.+.++
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~t 44 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEIT 44 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEE
Confidence 3599999999999999987765
No 85
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=23.39 E-value=1.6e+02 Score=26.05 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=23.3
Q ss_pred cccCceEEEEEEEEcCCcceeEeeecee
Q psy10650 233 YVPGETIIINATVYNRSKITVKSTKAAL 260 (446)
Q Consensus 233 YvPGE~I~v~v~I~N~S~k~ik~i~~~L 260 (446)
..-+|.+.|...|.|.++.+++.+.+.+
T Consensus 58 l~~~~~~~v~g~V~N~g~~~i~~c~i~~ 85 (149)
T PF09624_consen 58 LQYSESFYVDGTVTNTGKFTIKKCKITV 85 (149)
T ss_pred eeeccEEEEEEEEEECCCCEeeEEEEEE
Confidence 4468999999999999999998765544
No 86
>PF00963 Cohesin: Cohesin domain; InterPro: IPR002102 Cohesin domains interact with a complementary domain, termed the dockerin domain (see IPR002105 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The scaffoldin component of the cellulolytic bacterium Clostridium thermocellum is a non-hydrolytic protein which organises the hydrolytic enzymes in a large complex, called the cellulosome. Scaffoldin comprises a series of functional domains, amongst which is a single cellulose-binding domain and nine cohesin domains which are responsible for integrating the individual enzymatic subunits into the complex.; GO: 0030246 carbohydrate binding, 0000272 polysaccharide catabolic process; PDB: 2BM3_A 3P0D_I 3KCP_A 2B59_A 3L8Q_B 3FNK_C 3GHP_B 2CCL_A 1ANU_A 1OHZ_A ....
Probab=22.97 E-value=2.1e+02 Score=24.82 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=25.6
Q ss_pred EEEeccceecCCCeEEEEEEEeeccceeeeeeEEEE
Q psy10650 286 RVSLDRGGYVPGETIIINATVYNRSKITVKSTKAAL 321 (446)
Q Consensus 286 ~~sl~r~gY~pGE~I~i~v~I~N~S~~~I~~i~v~L 321 (446)
+++++..--.+||++.+.+.+.|.++. |..+.+.|
T Consensus 2 ~l~~~~~~a~~G~tv~V~V~v~~~~~~-i~~~~~~l 36 (141)
T PF00963_consen 2 TLSVDSVSAKPGETVTVPVNVSNVSNS-IAGMQFTL 36 (141)
T ss_dssp EEEESECEE-TTSEEEEEEEEESCTTT-EEEEEEEE
T ss_pred EEEeCCceECCCCEEEEEEEEEcCCCc-EEEEEEEE
Confidence 456777777999999999999997654 65555544
No 87
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=22.49 E-value=1.8e+02 Score=32.11 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=16.0
Q ss_pred EEcccccccCceEEEEEEEEcCCcce
Q psy10650 227 SLDRGGYVPGETIIINATVYNRSKIT 252 (446)
Q Consensus 227 ~lpr~gYvPGE~I~v~v~I~N~S~k~ 252 (446)
+.||.-|.|||+|.++++..|.....
T Consensus 1 ~tDKA~Y~PGe~V~l~~~~~~~~~~~ 26 (559)
T PF13199_consen 1 TTDKARYRPGEKVTLTASLKNTTGSD 26 (559)
T ss_dssp EES-SSB-TTS-EEEE-EEE--SSS-
T ss_pred CCCcceeCCCCeEEEEEEeccCcccc
Confidence 35788999999999999999986543
No 88
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=21.18 E-value=1.9e+02 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=35.6
Q ss_pred eecCCcEEEEEEEcccccccCceEEEEEEEEcCCcceeE
Q psy10650 216 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVK 254 (446)
Q Consensus 216 c~~sG~v~l~v~lpr~gYvPGE~I~v~v~I~N~S~k~ik 254 (446)
-+..|..|+-+-=.+..+.-||.|++++..+|.....|.
T Consensus 99 ~lkpGgyHvMlm~lK~pl~eGd~v~vtL~f~~~~~~~v~ 137 (151)
T COG2847 99 ELKPGGYHVMLMGLKKPLKEGDKVPVTLKFEKAGKVTVE 137 (151)
T ss_pred EecCCCEEEEEeccCCCccCCCEEEEEEEEecCCeEEEE
Confidence 478999999999999999999999999999999877765
Done!