RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10650
(446 letters)
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 218
Score = 79.0 bits (194), Expect = 2e-17
Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 32/195 (16%)
Query: 277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA------R 330
+S P+ SLD+ Y GE I +N V N + TVK K ++ + +
Sbjct: 16 LMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYK 75
Query: 331 NKVLESETREL--ASLTRGKIK-----------------PGERDDWTNQQLYVPPLPPTN 371
V E + S T K+ G+ L
Sbjct: 76 CPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGA 135
Query: 372 LRGCHLIKIQYDV-------FFIVDPKSIEKPVKLQLPIMLATYPFRQDDGSLQRKSSGT 424
R I + Y V + V ++LP L +++ + T
Sbjct: 136 NREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKPKEEPPHREVPEHET 195
Query: 425 HYPTTLPIFRPWLEE 439
T L ++
Sbjct: 196 PVDTNLIELDTNDDD 210
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 211
Score = 76.2 bits (187), Expect = 1e-16
Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 32/161 (19%)
Query: 277 CVSSGPVLCRVSLDRGGYVPGETIIINATVYNRSKITVKSTKAALTETIQYLA------R 330
+S P+ VSL + Y GE I + V N ++ TVK K + + +
Sbjct: 15 FMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYI 74
Query: 331 NKVLESETRE----------------LASLTRGK----IKPGERDDWTNQQLYVPPLPPT 370
V E +E L + R + + + + TN +
Sbjct: 75 KTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLAS-STIIKEG 133
Query: 371 NLRGCHLIKIQYDVFFIVDPKS-----IEKPVKLQLPIMLA 406
+ I + Y + + V ++P L
Sbjct: 134 IDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLM 174
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 36.3 bits (83), Expect = 0.005
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 1 MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
M K + E +E+ + E+ E ++ + K++++ K E+E+ +E
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Score = 33.2 bits (75), Expect = 0.054
Identities = 9/54 (16%), Positives = 24/54 (44%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
E + E+ + R +E ++ +K + + + K++ K +E++ L
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 278
Score = 33.2 bits (75), Expect = 0.059
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
+ + +++ + KE +E K+ +K + + + E+E K
Sbjct: 221 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 270
Score = 30.9 bits (69), Expect = 0.25
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 1 MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
E+ +E Q E + + + + K++++ K +++++ +E ++E
Sbjct: 236 QKERSYQEHLKQLTE-----KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Score = 30.9 bits (69), Expect = 0.27
Identities = 6/54 (11%), Positives = 24/54 (44%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
E + + + ++ E + ++ ++K++ ++ + E+ E ++ L
Sbjct: 207 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 260
Score = 30.5 bits (68), Expect = 0.37
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 1 MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
+EKE + + V S + E ++K ++ ++K++ E ++ EK
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Score = 30.1 bits (67), Expect = 0.56
Identities = 6/56 (10%), Positives = 26/56 (46%)
Query: 2 NEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
+ K EK + ++ + + + +++++ K+ +K+ + + E ++ +
Sbjct: 244 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 33.1 bits (75), Expect = 0.056
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
+ E K+ + +K K+ + Y + E + D K
Sbjct: 222 SKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAK 258
Score = 30.0 bits (67), Expect = 0.55
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 19 ISRGKEEETEEEKKKKKKKKKKKKKKKRYEE--EEKEEEKDNKLLHNCY 65
I R K E K+ + +K K+ + + E K + K + LL+NC
Sbjct: 219 IIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCD 267
Score = 28.5 bits (63), Expect = 1.6
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 30 EKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSYY 70
+ K + K YE ++ +E L
Sbjct: 216 RDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKND 256
Score = 28.5 bits (63), Expect = 1.7
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 30 EKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSYY 70
+ K + K+ + + +E E K+ N
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVS 260
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 31.8 bits (72), Expect = 0.064
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 3 EKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
EK E+E +K + + + +E+ +K + K+ ++ E+ +EKD
Sbjct: 71 EKREHEREVIQKAIEENNN-FIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHA 127
Score = 31.8 bits (72), Expect = 0.068
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 9 KEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
+E Q+K R K +E E K +K++ +++ ++ EE K K
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAK 95
Score = 31.4 bits (71), Expect = 0.084
Identities = 7/52 (13%), Positives = 21/52 (40%)
Query: 8 EKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
E+ + ++ E K+ ++ ++ + +++ EE + NK
Sbjct: 83 AIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 31.0 bits (70), Expect = 0.11
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLL 61
E E R E E ++ ++ K K+K ++ E +E L
Sbjct: 63 AELLKHLAEK----REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHL 113
Score = 29.1 bits (65), Expect = 0.49
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEE 51
+K + KE + ++ ++K K ++ +K E +E
Sbjct: 99 AQKMESNKE-----NREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 27.9 bits (62), Expect = 1.4
Identities = 7/57 (12%), Positives = 21/57 (36%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHN 63
E + E +E +K + K+ ++ E +++++ ++ N
Sbjct: 77 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 133
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 30.4 bits (68), Expect = 0.12
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 25 EETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKD 57
+ +K K K K Y+ + + D
Sbjct: 70 TSEAISQFLEKPKPKTASLIKAYKMAQSTPDLD 102
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 29.5 bits (66), Expect = 0.14
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 2 NEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
++ E + K+ + + + + KK K++ KK +E ++ K
Sbjct: 18 QQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKV--ADETAKDGKTGN 73
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 31.8 bits (71), Expect = 0.16
Identities = 5/36 (13%), Positives = 18/36 (50%)
Query: 28 EEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHN 63
+ ++ + +++ + + +E+ + + K LHN
Sbjct: 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 38
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 31.2 bits (71), Expect = 0.16
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 29 EEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
+ + + +K+ K++K K EE EK ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.7 bits (67), Expect = 0.55
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 28 EEEKKKKKKKKKKKKKKKRYEEEEKEEE 55
+ + + +K+ K++K K + E E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.3 bits (66), Expect = 0.73
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 25 EETEEEKKKKKKKKKKKKKKKRYEEEEK 52
+ E +K+ K++K K K++ + ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 27.0 bits (60), Expect = 3.6
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRY 47
+++ ++EEK K K++ +K K+ +
Sbjct: 116 RKQMSKEEKLKIKEENEKLLKEYGF 140
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 30.9 bits (69), Expect = 0.26
Identities = 6/41 (14%), Positives = 19/41 (46%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHN 63
+ + ++ + K+ + K+R+E + KE ++ +
Sbjct: 117 FHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK 157
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.4 bits (69), Expect = 0.31
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 29 EEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
+ +K++KK+ ++KK+ E EK EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.7 bits (67), Expect = 0.53
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 25 EETEEEKKKKKKKKKKKKKKKRYEEEEK 52
+ +E+KK+ ++KK+ + +R + EE
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.7 bits (67), Expect = 0.56
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 28 EEEKKKKKKKKKKKKKKKRYEEEEKEEE 55
+ +K++KK+ ++KK+ R E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.9 bits (65), Expect = 0.95
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 24 EEETEEEKKKKKKKKKKKKKKKRYEEEE 51
+ + E++K+ ++KK+ + ++ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.0 bits (60), Expect = 4.4
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRY 47
K++ T +EKK+ + +++K ++ ++
Sbjct: 108 KKQLTSQEKKQIRLEREKFEEDYKF 132
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 28.2 bits (63), Expect = 0.37
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 9 KEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKE 53
+E+ +V +++ E K K + + K K K Y+ KE
Sbjct: 24 RENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVKE 68
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 29.2 bits (65), Expect = 0.78
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 25 EETEEEKKKKKKKKKKKKKKKRYEEEEKEE-EKDNKLL 61
+ + +++ ++K +K K EE+ E + + L
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEEL 250
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.6 bits (66), Expect = 0.79
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKK 45
K ETEE+ ++ K K+K +K++
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKER 331
Score = 28.8 bits (64), Expect = 1.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKR 46
++ EEK ++ K K+K +K+R
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.4 bits (63), Expect = 1.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 28 EEEKKKKKKKKKKKKKKKRYEEEEKE 53
+E +K+++ ++K ++ K E+ EKE
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 28.0 bits (62), Expect = 2.3
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 31 KKKKKKKKKKKKKKKRYEEEEKEEEKD 57
K+ +K+++ ++K +R + +++ EK+
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 26.5 bits (58), Expect = 6.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKR 46
KE + E ++K ++ K K+K
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAE 328
Score = 26.1 bits (57), Expect = 8.4
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 32 KKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
K+ +K+++ ++K R + KE+ + +L
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 229
Score = 29.2 bits (64), Expect = 0.80
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 257 KAALTEQPFDCEIEHKLGVACV-SSGPVLCRVSLDRGGYVPGETIIINATVYNRSKI--T 313
K + D + VA + V+ + + +P ET+ +++ +Y+ +I
Sbjct: 143 KGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDRPIPVETLKLDSKLYSEDEIKAY 202
Query: 314 VKSTKAALTETIQYLARNKVLESE 337
+ +AA + + LES+
Sbjct: 203 KERYEAANLVPFREYLEAEGLESK 226
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 28.9 bits (63), Expect = 0.86
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRYEEEEKEE 54
K + E+ KK K+ K K ++EK++
Sbjct: 152 KSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQD 183
Score = 27.3 bits (59), Expect = 3.0
Identities = 6/47 (12%), Positives = 22/47 (46%)
Query: 13 EKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
+KE+ + ++ ++E+ K KK + ++ ++ ++ +
Sbjct: 4 KKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDT 50
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha,
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 239
Score = 29.2 bits (65), Expect = 0.87
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 17 GGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSYYRVTHIC 76
GGI + E+ E+E + K K + E+E + + Y+VT I
Sbjct: 31 GGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVI- 89
Query: 77 FSDPPGQA 84
D PG
Sbjct: 90 --DAPGHR 95
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.9 bits (62), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 31 KKKKKKKKKKKKKKKRYEEEEKE 53
K K K K +++ K E E++E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
Score = 27.1 bits (60), Expect = 2.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 32 KKKKKKKKKKKKKKRYEEEEKEE 54
K K K K +++ K E EK E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
Score = 26.4 bits (58), Expect = 5.2
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 31 KKKKKKKKKKKKKKKRYEEEEKEEE 55
K +++ K + + +K+ +E +E
Sbjct: 9 KNRRRGKNENESEKRELVFKEDGQE 33
Score = 25.2 bits (55), Expect = 9.8
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 31 KKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNC 64
+++ K + + +K++ ++E+ +E + K+L N
Sbjct: 11 RRRGKNENESEKRELVFKEDGQEYAQVIKMLGNG 44
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 27.5 bits (61), Expect = 1.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
+ + EE++ K + + K R +E EKE EK
Sbjct: 84 AQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEK 117
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 27.9 bits (62), Expect = 1.9
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 19 ISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK------DNKLLHNC 64
I +E+ +E+ + + + K+ +EE E + D+ LL
Sbjct: 40 IKSQEEKLRKEKSLNNEFIQVIEDIKRDFEESILLESEDVIRIIDDNLLMYS 91
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.2 bits (60), Expect = 1.9
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 1 MNEKGGEEKEDQEKEVGG-ISRGKEEETEEEKKK-----KKKKKKKKKKKKRYEEEEKEE 54
E K+ E S+ + +++EK +KKK + + R+ E EE
Sbjct: 29 CAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEE 88
Query: 55 EKDNKL 60
E+ L
Sbjct: 89 EQQRVL 94
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 26.4 bits (58), Expect = 2.0
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 7 EEKEDQEKEVGGISR--GKEEETEEEKKKKKKKKKKKKKKKRYEEEEKE 53
++ D S+ + +T K+K K + K K RYE E K
Sbjct: 22 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 70
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.1 bits (62), Expect = 2.0
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 19 ISRGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSY 69
IS+ KEE ++ K+ ++ +K K + K E K C ++
Sbjct: 247 ISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNF 297
Score = 26.2 bits (57), Expect = 7.9
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 30 EKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCYLYSYY 70
++ KKK++ K+ K+Y+E +K Y
Sbjct: 244 KEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVY 284
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 27.5 bits (61), Expect = 2.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 10 EDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRY 47
E++ E G S + EE ++KK K+ + +
Sbjct: 55 EEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQ 92
Score = 26.3 bits (58), Expect = 4.4
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 1 MNEKGGEEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEE 49
+ +K QE+E+ G E + ++ ++KK K+ R E+
Sbjct: 43 LERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEFRPED 91
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 28.1 bits (62), Expect = 2.3
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLLHNCY 65
++ + + K KK +K E + + L+
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFK 271
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 27.3 bits (60), Expect = 2.5
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 26 ETEEEKKKKKKKKKKKKKKKRYEEEEKE 53
+TEEEK+ + + +++ + E K+
Sbjct: 130 DTEEEKESHRIAVLRAEQRHIRKAESKK 157
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 26.3 bits (58), Expect = 2.7
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 23 KEEETEEEKKKKKKKKKKKKKKK 45
KE E + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.3 bits (58), Expect = 3.0
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 22 GKEEETEEEKKKKKKKKKKKKKKKR 46
G +E E + K+ +KR
Sbjct: 76 GILKEVVPEGYEMKRVGDYYVFEKR 100
Score = 25.9 bits (57), Expect = 4.1
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 32 KKKKKKKKKKKKKKRYEEEEKEE 54
K+ + + K+ Y EK E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 7.2
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 29 EEKKKKKKKKKKKKKKKRYEEEE 51
+E + + K+ +E+ E
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 26.0 bits (57), Expect = 3.6
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 28 EEEKKKKKKKKKKKKKKKR 46
E KK+ +KKK KR
Sbjct: 5 REPKKRTTRKKKDPNAPKR 23
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.3 bits (57), Expect = 3.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 28 EEEKKKKKKKKKKKKKKKRYEEEEK 52
+ ++ K+K ++ ++K+R EE EK
Sbjct: 79 DSKRLAKRKLIEENREKRRREELEK 103
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.4 bits (58), Expect = 3.7
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 25 EETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
+E + K++K + + EEE +++
Sbjct: 84 QECKTVALKRRKASSRLENLGIPEEELLRQQQ 115
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 25.6 bits (56), Expect = 3.7
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKR 46
EE+ + + + + KKKK+K+++
Sbjct: 47 EEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 26.6 bits (59), Expect = 3.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 14 KEVGGISRGKEEETEEEKKKKKKKKKKKKKKKR 46
K+ G SRG+ E ++++ +K +K K
Sbjct: 52 KDKKGNSRGRARERQKKRAYGHQKGAGSRKGKA 84
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 25.2 bits (55), Expect = 4.0
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 9 KEDQEKEVGGISR--GKEEETEEEKKKKKKKKKKKKKKKRYEEE 50
+ + IS+ G + +K+ +++ + K++ E+
Sbjct: 23 QAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEK 66
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 25.7 bits (56), Expect = 4.2
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 9 KEDQEKEVGGISRGKEEE--TEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDN 58
K E +++ ++ EKKK K + +++K+ +E +D+
Sbjct: 31 KLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDH 82
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (55), Expect = 4.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 30 EKKKKKKKKKKKKKKKRYEEEEKE 53
+ K KK+ K+ + Y +EE E
Sbjct: 35 FRSKDHKKRLKQLSVEPYSQEEAE 58
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 181
Score = 26.8 bits (59), Expect = 4.4
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 24 EEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKL 60
EE E++ + + ++ ++E K K N +
Sbjct: 3 EEFPEQKAGEAINQPMMMAARQLHDEARKWSSKGNDI 39
>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase
RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Length = 176
Score = 26.7 bits (58), Expect = 5.0
Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 9/138 (6%)
Query: 47 YEEEEKEEEKDNKLLHNCYLYSYYRVT-HICFSDPPGQAPVLLSPGIHSFPFKLGLPLGL 105
++ E+ + + ++ +S V + + P + ++
Sbjct: 31 FKSEDFTKMRIPNVIQTNMSFSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKS 90
Query: 106 PSTFLGQAPVLLSPGIHSFPFKLGLPLGLPSTFLGKHGWVQYFCKAALREPTGYTHKNQQ 165
TF L+ + + + L + + +
Sbjct: 91 SPTFGKYVKAELNE-ENHYMLWIPPGFAHGFQALEDSIVIYFIT-------HNEYSPPHE 142
Query: 166 VFIIMSPIDLNLEPPILS 183
I S ID ++ I+S
Sbjct: 143 RCISYSYIDWPIKEVIIS 160
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 25.2 bits (55), Expect = 5.0
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 21 RGKEEETEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNK 59
G+ K+ +KK K K++YE++ K
Sbjct: 37 LGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK 75
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.7 bits (56), Expect = 5.6
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 8 EKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKK 44
E ++E+ I + + KKK + K
Sbjct: 83 EDNEKEQITQHI-----ADLSSKAAGTPKKKAVVQAK 114
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 26.3 bits (58), Expect = 5.9
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 1 MNEKGGEEKEDQ-EKEVGGISRGKEEETEEEKKKKKK--KKKKKKKKKRYEEEEKEEEKD 57
+E+ + E+ + + + T KK+ K +K K EE++ +
Sbjct: 53 NSEEAVDGMGADVEQVIDIVDSFQLTSTSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDV 112
Query: 58 NK 59
K
Sbjct: 113 FK 114
>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 25.9 bits (57), Expect = 6.2
Identities = 6/47 (12%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 13 EKEVGGISRGKEEETEEEKKKKKKKKKKKKKK-KRYEEEEKEEEKDN 58
E + G++ + ++E+ + ++ + K + R + +K+ +
Sbjct: 2 ELQARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTS 48
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
{Escherichia coli [TaxId: 562]}
Length = 272
Score = 26.2 bits (57), Expect = 7.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 8 EKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKKKKKRYEEE 50
E E Q + GI R +E +EK K +K K+ K+Y E+
Sbjct: 211 EAETQHWVLEGIERAVKEADIKEKNKDLIEKFKEHVAKKYNEQ 253
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 25.2 bits (55), Expect = 7.8
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 7 EEKEDQEKEVGGISR--GKEEETEEEKKKKKKKKKKKKKKKRYEEEEKE 53
E + G + + +K+ KK ++++++Y+
Sbjct: 25 SNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDL 73
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase
NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 25.0 bits (54), Expect = 8.0
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 26 ETEEEKKKKKKKKKKKKKKKRYEEEEKEEEK 56
++ + + K KK EE K ++
Sbjct: 64 VEGDKSFAEGQTSINKTFKKALEEAAKRFQE 94
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 24.4 bits (53), Expect = 8.9
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 7 EEKEDQEKEVGGISRGKEEETEEEKKKKKKKKKKKK-------KKKRYEEEEKEEEK 56
E+ D +++ + + + KK + KKK K + ++EE K
Sbjct: 16 EQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 72
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 26.2 bits (57), Expect = 9.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 27 TEEEKKKKKKKKKKKKKKKRYEEEEKEEEKDNKLL 61
E+ K + K K + + + KE EK+ LL
Sbjct: 20 KEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLL 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.409
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,692,188
Number of extensions: 83596
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 116
Length of query: 446
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,199,356
Effective search space: 429369448
Effective search space used: 429369448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)