BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10659
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 89/136 (65%), Gaps = 15/136 (11%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNE 79
ND +CPICF++I EA++T+CGH+FC+ CI + +E +CPKC+ + +++ ++PNFL+NE
Sbjct: 132 NDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNE 191
Query: 80 LVQKHKIK----------SAQDSDGLR-----DFVASESQNLSLPDVNLMLEVLNQRKHL 124
L+ K K + S ++G R D++ ++ NL L +VNLMLE+L Q+K
Sbjct: 192 LILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNLMLELLVQKKKQ 251
Query: 125 LEAESSVAQYKLLYEL 140
LEAES AQ ++L E
Sbjct: 252 LEAESHAAQLQILMEF 267
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 88/136 (64%), Gaps = 15/136 (11%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNE 79
ND +CPICF++I EA++T+CGH+FC+ CI + +E +CPKC+ + +++ ++PNFL+NE
Sbjct: 134 NDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNE 193
Query: 80 LVQKHKIK----------SAQDSDGLR-----DFVASESQNLSLPDVNLMLEVLNQRKHL 124
L+ K K + S ++G R D + ++ NL L +VNLMLE+L Q+K
Sbjct: 194 LILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQ 253
Query: 125 LEAESSVAQYKLLYEL 140
LEAES AQ ++L E
Sbjct: 254 LEAESHAAQLQILMEF 269
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLN 78
D DLLCPIC ++I++A +T CGH+FC+ CI + + CP CS L + N ++PNFLL+
Sbjct: 47 DKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTN-NQLYPNFLLD 105
Query: 79 ELVQK----HKIKSAQDSDGLRDFVASESQNLSLPDVNLMLEVLNQRKHLLEAESSVAQY 134
+L++K H K+A D R+ + ++S+ +V+ +L +L +RK +E E +
Sbjct: 106 KLLKKTSARHVSKTASPLDQFREAL-QRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNM 164
Query: 135 KLLYEL 140
++L +
Sbjct: 165 QILLDF 170
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLN 78
D D LCPIC ++I++A +T CGH+FC+ CI + + CP C L + N +FPNFLL+
Sbjct: 42 DKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSN-LFPNFLLD 100
Query: 79 ELVQK 83
+L++K
Sbjct: 101 KLLKK 105
>sp|Q9UPQ4|TRI35_HUMAN Tripartite motif-containing protein 35 OS=Homo sapiens GN=TRIM35
PE=1 SV=2
Length = 493
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 14/81 (17%)
Query: 7 PSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIK--CPKCS-- 62
PSRS K +LLC +C++ R+A RCGH FC C+S+C E+Q+ CP C
Sbjct: 11 PSRSFK-------EELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDR 63
Query: 63 ASLPDMNSVFPNFLLNELVQK 83
AS D+ + N LN LV+K
Sbjct: 64 ASPADLRT---NHTLNNLVEK 81
>sp|Q5RBG2|TRI35_PONAB Tripartite motif-containing protein 35 OS=Pongo abelii GN=TRIM35
PE=2 SV=1
Length = 492
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 14/81 (17%)
Query: 7 PSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIK--CPKCS-- 62
PSRS K +LLC +C++ R+A RCGH FC C+S+C E+Q+ CP C
Sbjct: 11 PSRSFK-------EELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDR 63
Query: 63 ASLPDMNSVFPNFLLNELVQK 83
AS D+ + N LN LV+K
Sbjct: 64 ASPADLRT---NHTLNNLVEK 81
>sp|Q5RKG6|TRI35_RAT Tripartite motif-containing protein 35 OS=Rattus norvegicus
GN=Trim35 PE=2 SV=1
Length = 501
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 SATSTPSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQI--KCP 59
S + PSRS K +LLC +C++ R+A RCGH FC C+S C E+Q CP
Sbjct: 6 SVSPGPSRSFK-------EELLCAVCYDPFRDAVTLRCGHNFCRRCVSGCWEVQTTPSCP 58
Query: 60 KCSA-SLPDMNSVFPNFLLNELVQ 82
C ++P + N LN LV+
Sbjct: 59 VCKERAVP--GELRTNHTLNNLVE 80
>sp|Q8C006|TRI35_MOUSE Tripartite motif-containing protein 35 OS=Mus musculus GN=Trim35
PE=2 SV=2
Length = 501
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 2 SATSTPSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQI--KCP 59
S + PSRS K + LLC +C++ R+A RCGH FC C+S C E+Q CP
Sbjct: 6 SVSPGPSRSFKEE-------LLCAVCYDPFRDAVTLRCGHNFCRRCVSGCWEVQTTPSCP 58
Query: 60 KCSA-SLPDMNSVFPNFLLNELVQ 82
C ++P + N LN LV+
Sbjct: 59 VCKERAVP--GELRTNHTLNNLVE 80
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQ--IKCPKCSASLPDMNSVFPNFLLN 78
+L CP+C EL ++ + CGH FC SCI K E Q CP+C S+ D L N
Sbjct: 143 ELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESITDRKYTINRVLAN 202
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQ--IKCPKCSASLPDMNSVFPNFLLN 78
+L CP+C EL ++ + CGH FC SCI K E Q CP+C S+ D L N
Sbjct: 142 ELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESITDRKYTINRVLAN 201
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD------------ 67
+DL C +C L E T CGHTFC C+ +C++ KCP C L
Sbjct: 463 SDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 522
Query: 68 MNSVFPNFLLNELVQKHKI 86
M + FL EL ++ K+
Sbjct: 523 MEELIAKFLPEELKERRKL 541
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD------------ 67
+DL C +C L E T CGHTFC C+ +C++ KCP C L
Sbjct: 422 SDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 481
Query: 68 MNSVFPNFLLNELVQKHKI 86
M + FL EL ++ K+
Sbjct: 482 MEELIAKFLPEELKERRKL 500
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVEL--QIKCPKCSASLPDMNSVFPNFLLN 78
++ CPIC E++++ CGH FC CIS+ + +I+CP C S+ + N+ PN LL
Sbjct: 13 EVTCPICMEILQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSV-NKNTFRPNKLLA 71
Query: 79 ELVQK 83
L +K
Sbjct: 72 SLAEK 76
>sp|Q6AZZ1|TRI68_HUMAN E3 ubiquitin-protein ligase TRIM68 OS=Homo sapiens GN=TRIM68 PE=1
SV=1
Length = 485
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVEL-------QIKCPKCSASLPDMNSVFP 73
++ CPIC +RE CGH+FC SC+S E+ CP C A + N + P
Sbjct: 13 EVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCRAPVQPRN-LRP 71
Query: 74 NFLLNELVQKHKIKSAQDSDGLR-DFVASESQNLSL---PDVNLMLEVLNQ 120
N+ L +V+K ++ GL+ D + L + DV +M E +Q
Sbjct: 72 NWQLANVVEKVRLLRLHPGMGLKGDLCERHGEKLKMFCKEDVLIMCEACSQ 122
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNF 75
SP ++ L C +C + IT C HTFC CI +C+ + KCP C +S ++ + N+
Sbjct: 22 SPLESSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPACRSSDQELK-LRRNW 80
Query: 76 LLNELVQ 82
+ ELV+
Sbjct: 81 AVQELVE 87
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQ---IKCPKCSASLPDMNSVFPNFLL 77
+++CPIC +++++ CGH FC CI++ E KCP C S+ N++ N LL
Sbjct: 13 EVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK-NAIRFNSLL 71
Query: 78 NELVQKHKIKSAQDSD 93
LV+ KI++ Q S+
Sbjct: 72 RNLVE--KIQALQASE 85
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNF 75
+P + L C +C + IT C HTFC CI +C+ + KCP C +S ++ + N+
Sbjct: 22 APFETSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPTCRSSDQEL-KLRRNW 80
Query: 76 LLNELVQKHK 85
++ ELV+ K
Sbjct: 81 VVQELVEGFK 90
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKC 61
+DL C +C L E T CGHTFC C+ +C++ KCP C
Sbjct: 457 SDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLC 498
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVEL---QIKCPKCSA--SLP--DMNSVFPN 74
L CPIC + ++ + C HTFC+ C+ C + +KCP+C A ++P + + PN
Sbjct: 41 LTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAEHNIPYDGVKAFQPN 100
Query: 75 FLLNELVQKH 84
+ L ++ H
Sbjct: 101 YTLTGFLEIH 110
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 2 SATSTPSRSLKRQHSP--PDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-LQIKC 58
+ S +R+L+R+ P P C +C E++ + TRCGH FC SCI+ ++ + C
Sbjct: 13 APASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTC 72
Query: 59 PKCSASLP 66
P C A LP
Sbjct: 73 PYCRAYLP 80
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLN 78
D+ L C IC + ++ + +T CGH+FC CI K ++ + KCP C + L + + + FL+
Sbjct: 27 DSLLRCHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTE-SMLQKEFLVQ 85
Query: 79 EL----------VQKHKIKSAQDSDGLRDFVASESQNLSL 108
E+ +QKH S+Q+ + + + S+ + S+
Sbjct: 86 EICSSYVKLRGSLQKHLTISSQEEEKDNEIIISDEADTSV 125
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis
GN=RNF125 PE=2 SV=3
Length = 232
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 4 TSTPSRSLKRQHSP--PDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-LQIKCPK 60
++TP R+L+R+ P P C +C E++ + TRCGH FC SCI+ ++ + CP
Sbjct: 16 SATP-RALERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPY 74
Query: 61 CSASLP 66
C A LP
Sbjct: 75 CRAYLP 80
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNF---- 75
D C +C L+ E T CGHTFC C+ +C++ CP C L ++ + NF
Sbjct: 445 TDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSELLASR-NFNITV 503
Query: 76 LLNELVQKHKIKSAQDSDGLRDFVASESQNLS 107
L EL+ ++ D + D SE NL+
Sbjct: 504 LAEELIFRYLPDELSDRKRIYDEEMSELSNLT 535
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLN 78
D+ L C IC ++++ +T+CGHTFC CI + + + +CP C A L N + FL+
Sbjct: 27 DSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAEL-RQNMLQKEFLVG 85
Query: 79 ELV 81
EL
Sbjct: 86 ELA 88
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELV 81
L CPIC E ++ T CGHT+C+ C+ ++ CP C L S P +L+ E++
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS--PAYLVYEIM 140
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSC---ISKCVELQIKCPKCSASLPDMNSVFPNF 75
++ L CPIC E+ +E+ + +CGH++C C +S ++ +++CP C + D +S PN
Sbjct: 11 EDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMC-WQVVDGSSSLPNV 69
Query: 76 LLNELVQ 82
L +++
Sbjct: 70 SLAWVIE 76
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSC---ISKCVELQIKCPKCSASLPDMNSVFPNF 75
++ L CPIC E+ +E+ + +CGH++C C +S ++ +++CP C + D +S PN
Sbjct: 11 EDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMC-WQVVDGSSSLPNV 69
Query: 76 LLNELVQ 82
L +++
Sbjct: 70 SLAWVIE 76
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1
SV=1
Length = 1002
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASLP--DMNSVF 72
L CP C ++A +T+C H FCF C+ E Q KCPKC+A+ D + V+
Sbjct: 947 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVY 1000
>sp|Q86XT4|TRI50_HUMAN E3 ubiquitin-protein ligase TRIM50 OS=Homo sapiens GN=TRIM50 PE=1
SV=1
Length = 487
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKC---VELQIKCPKCSASLPDMNSVFPNF 75
++ L CPIC E+ +E + +CGH++C C+ ++ +++CP C ++ D +S PN
Sbjct: 11 EDWLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV-DGSSSLPNV 69
Query: 76 LLNELVQ 82
L +++
Sbjct: 70 SLARVIE 76
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13
PE=3 SV=1
Length = 408
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ----------IKCPKCSASLPDM 68
+ DL CPIC L + + C H FC C+ +E KCP C P M
Sbjct: 5 EEDLTCPICCSLFDDPRVLPCSHNFCKKCLDGVLEENSRTMQWRPSSFKCPTCRKETPTM 64
Query: 69 --NSVFPNFLLNELVQKH-KIK 87
N + N+LL +V+K+ KIK
Sbjct: 65 GVNGLQVNYLLKGIVEKYNKIK 86
>sp|Q5BK82|TRI69_RAT E3 ubiquitin-protein ligase TRIM69 OS=Rattus norvegicus GN=Trim69
PE=2 SV=1
Length = 499
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQIK---CPKCSASLPDMNSVFPNFLL 77
+L CP+C + R+ + CGH FC +CI ++Q K CP+C N F N +L
Sbjct: 38 ELHCPLCNDWFRDPLMLTCGHNFCQACIQNYWKMQAKETFCPECKMLCQYSNCTF-NLVL 96
Query: 78 NELVQKHK 85
+LV+K K
Sbjct: 97 EKLVEKIK 104
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 3 ATSTPSRSLKRQHSP--PDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIK--C 58
A++TP R+L+R P C +C E++ + TRCGH FC SCI+ ++ K C
Sbjct: 15 ASATP-RTLERSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTC 73
Query: 59 PKCSASLPDMNSVFPNFLLNELVQKHKIKSAQDSDGLRDFVASESQNLSLPDVNLMLEVL 118
P C A LP +E V I + SE QN + + ++ +
Sbjct: 74 PYCRAYLP-----------SEGVPATDIAKR---------MKSEYQNCA--ECGTLVCLS 111
Query: 119 NQRKHLLEAESSVAQYKLLYEL 140
+ R H+ E + +Y L EL
Sbjct: 112 DMRAHIRTCEKYIDKYGPLLEL 133
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2
SV=2
Length = 1001
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASLP--DMNSVF 72
L CP C ++A +T+C H FCF C+ E Q KCPKC+A+ D + V+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVY 999
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSC---ISKCVELQIKCPKCSASLPDMNSVFPNF 75
++ L CP+C E+ +E + +CGH++C C +S+ ++ +++CP C + D +S PN
Sbjct: 11 EDRLQCPVCLEVFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEV-DSSSSPPNV 69
Query: 76 LLNELVQ 82
L +++
Sbjct: 70 SLARVIE 76
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSC---ISKCVELQIKCPKCSASLPDMNSVFPNFL 76
+ L CPIC E+ +E + +CGH++C +C +S+ ++ +++CP C S+ D +S PN
Sbjct: 12 DQLQCPICLEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSV-DCSSSPPNVS 70
Query: 77 LNELV 81
L ++
Sbjct: 71 LARVI 75
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 23 LCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVF 72
LC +C E R + T CGH FC+ CI++ + +CP C P V+
Sbjct: 270 LCTLCLEERRHSTATPCGHLFCWECITEWCNTKTECPLCREKFPPQKLVY 319
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2
SV=1
Length = 1001
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASL 65
L CP C ++A +T+C H FCF C+ E Q KCPKC+A+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAF 990
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1
SV=4
Length = 1001
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASL 65
L CP C ++A +T+C H FCF C+ E Q KCPKC+A+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAF 990
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASL 65
L CP C ++A +T+C H FCF C+ E Q KCPKC+A+
Sbjct: 946 LTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAF 990
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFL 76
P + C +C + +T C HTFC CI +C+ + KCP C A+ + + + N+
Sbjct: 27 PVEQAFRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCRATDQE-SKLRGNWA 85
Query: 77 LNELVQKHK 85
L E V+ K
Sbjct: 86 LREAVEAFK 94
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNS-VFPNFLL 77
D+ L C IC E R IT C HTFC CI + CP C A P+ S + N +L
Sbjct: 24 DSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRA--PEQESRLRKNTIL 81
Query: 78 NELVQKHKI 86
E+++ K+
Sbjct: 82 EEILESFKV 90
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 30/108 (27%)
Query: 24 CPICFELIREAHITRCGHTFCFSCISKCVEL----QIKCPKCSASLPDMNSVFPNFLLNE 79
CPIC A ITRCGH FC++CI + L KCP C +S
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSS--------------- 269
Query: 80 LVQKHKIKSAQDSDGLRDFVASESQNLSLPDVNLMLEVLNQRKHLLEA 127
V K +KS VA+ES+ ++ D + ++++ + K +L A
Sbjct: 270 -VHKKDLKSV---------VATESRQYAVGDT-ITMQLMKREKGVLVA 306
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 22 LLCPICFELIREAHITRCGHTFCFSCISKCVE--LQIKCPKCSASLPDMNSVFPNFLLNE 79
L CP+C L +E I CGH FC CI K E CP+C L + N +L
Sbjct: 161 LTCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTERKYT-TNRVLAN 219
Query: 80 LVQKHKIKSAQDSD 93
LV+K + +D D
Sbjct: 220 LVKKAAV-GVKDKD 232
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP-----------DM 68
+L C ICF ++ + ++ CGHTFC C+ + + +CP C LP +
Sbjct: 165 RELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKSHSI 224
Query: 69 NSVFPNFLLNELVQKHKIKSAQDSDGLRDFVASESQNLSLPDVNLMLEVLNQRKHLL 125
+ +F + +++ KS ++ ++ L+ P + L + R H++
Sbjct: 225 TTFLRDFYPDNWLERQ--KSWEEEKEQESWLPLFISMLAYPRMPTFLHIFELRYHIM 279
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD------------ 67
+D C +C L E T CGH+FC +C+ +C++ CP C SL +
Sbjct: 475 SDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRRYCVTQL 534
Query: 68 MNSVFPNFLLNELVQKHKIKSAQDSD 93
+ + +L +EL ++ KI + ++
Sbjct: 535 LEELIVKYLPDELSERKKIYDEETAE 560
>sp|Q8K243|TRI68_MOUSE E3 ubiquitin-protein ligase TRIM68 OS=Mus musculus GN=Trim68 PE=2
SV=1
Length = 485
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 24 CPICFELIREAHITRCGHTFCFSCISKCVE-------LQIKCPKCSASLPDMNSVFPNFL 76
CPIC +RE CGHTFC SC+S + L CP C A + + PN+
Sbjct: 16 CPICMTFLREPVSISCGHTFCHSCLSGLWKLPGESQNLSYTCPLCRAPVKP-RKLRPNWQ 74
Query: 77 LNELVQKHKI 86
L +V K ++
Sbjct: 75 LASVVDKVRL 84
>sp|Q28DL4|TRAF6_XENTR TNF receptor-associated factor 6 OS=Xenopus tropicalis GN=traf6
PE=2 SV=1
Length = 558
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCV-ELQIKCPKCSASLPDMNSVFP-N 74
P ++ CPIC +REA T CGH FC +CI K + + KCP + SL + N +FP N
Sbjct: 65 PLESKYECPICLMALREAVQTPCGHRFCKACILKSIRDAGHKCPVDNESLME-NQLFPDN 123
Query: 75 FLLNELV 81
F E++
Sbjct: 124 FAKREIL 130
>sp|Q86WT6|TRI69_HUMAN E3 ubiquitin-protein ligase TRIM69 OS=Homo sapiens GN=TRIM69 PE=1
SV=2
Length = 500
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQIK---CPKCSASLPDMNSVFPNFLL 77
+L CP+C + R+ + CGH FC +CI LQ K CP+C N F N +L
Sbjct: 38 ELHCPLCNDWFRDPLMLSCGHNFCEACIQDFWRLQAKETFCPECKMLCQYNNCTF-NPVL 96
Query: 78 NELVQKHK 85
++LV+K K
Sbjct: 97 DKLVEKIK 104
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 24 CPICFELIREAHITRCGHTFCFSCISKCVEL----QIKCPKCSASL--PDMNSV 71
CPIC A ITRCGH FC++CI + L KCP C +S+ D+ SV
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSERTWSKCPICYSSVHKKDLKSV 278
>sp|Q96LD4|TRI47_HUMAN Tripartite motif-containing protein 47 OS=Homo sapiens GN=TRIM47
PE=1 SV=2
Length = 638
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 24 CPICFELIREAHITRCGHTFCFSCISKCV-----------ELQIKCPKCSASLPDMNSVF 72
CPIC E +RE CGH FC +C+ +CP C PD +
Sbjct: 9 CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEPFPDGLQLR 68
Query: 73 PNFLLNELVQ 82
N L+EL+Q
Sbjct: 69 KNHTLSELLQ 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,453,120
Number of Sequences: 539616
Number of extensions: 1557653
Number of successful extensions: 5808
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 5099
Number of HSP's gapped (non-prelim): 1067
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)