Query psy10659
Match_columns 140
No_of_seqs 189 out of 1584
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 15:19:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.8 1.1E-20 3.8E-25 113.2 5.4 73 16-89 3-76 (78)
2 1wgm_A Ubiquitin conjugation f 99.8 2.7E-20 9.4E-25 116.2 7.4 74 15-89 16-90 (98)
3 3ztg_A E3 ubiquitin-protein li 99.8 5E-20 1.7E-24 113.7 5.9 75 14-88 6-83 (92)
4 2kre_A Ubiquitin conjugation f 99.8 7.7E-20 2.6E-24 114.5 6.7 73 16-89 24-96 (100)
5 2kr4_A Ubiquitin conjugation f 99.8 5.3E-20 1.8E-24 112.1 5.6 71 16-87 9-79 (85)
6 2y43_A E3 ubiquitin-protein li 99.8 9.7E-20 3.3E-24 113.9 2.4 72 17-89 18-90 (99)
7 3fl2_A E3 ubiquitin-protein li 99.8 2E-19 6.8E-24 116.8 3.3 71 17-87 48-119 (124)
8 2ysl_A Tripartite motif-contai 99.7 2.3E-18 7.8E-23 101.7 6.2 68 1-69 1-71 (73)
9 3lrq_A E3 ubiquitin-protein li 99.7 1.4E-19 4.8E-24 113.4 0.8 75 14-89 15-91 (100)
10 2ecw_A Tripartite motif-contai 99.7 3E-19 1E-23 108.3 1.4 65 14-79 12-82 (85)
11 2yur_A Retinoblastoma-binding 99.7 2E-18 6.9E-23 102.4 4.8 60 15-74 9-71 (74)
12 2csy_A Zinc finger protein 183 99.7 1.8E-18 6.2E-23 104.3 3.8 60 16-77 10-69 (81)
13 2ecv_A Tripartite motif-contai 99.7 4.3E-19 1.5E-23 107.6 1.1 64 14-78 12-81 (85)
14 2ysj_A Tripartite motif-contai 99.7 4.2E-18 1.4E-22 97.9 5.2 60 1-61 1-63 (63)
15 2djb_A Polycomb group ring fin 99.7 4E-18 1.4E-22 100.6 4.6 56 14-69 8-64 (72)
16 2ckl_B Ubiquitin ligase protei 99.7 2E-18 6.9E-23 117.1 3.4 73 18-90 51-125 (165)
17 2egp_A Tripartite motif-contai 99.7 1.7E-19 5.7E-24 108.2 -1.8 62 16-78 7-75 (79)
18 2yu4_A E3 SUMO-protein ligase 99.7 5.7E-18 2E-22 104.9 4.8 71 18-89 4-84 (94)
19 4ayc_A E3 ubiquitin-protein li 99.7 5.2E-18 1.8E-22 112.0 4.8 65 18-85 50-114 (138)
20 2ckl_A Polycomb group ring fin 99.7 4.5E-18 1.5E-22 107.8 4.0 70 17-86 11-84 (108)
21 1jm7_A BRCA1, breast cancer ty 99.7 6.5E-19 2.2E-23 112.2 0.1 75 11-86 11-88 (112)
22 2ecy_A TNF receptor-associated 99.7 9E-18 3.1E-22 97.4 4.9 56 14-69 8-64 (66)
23 1jm7_B BARD1, BRCA1-associated 99.7 1.7E-18 5.7E-23 111.4 1.9 70 15-87 16-86 (117)
24 1z6u_A NP95-like ring finger p 99.7 1E-17 3.6E-22 112.0 5.5 69 19-87 76-145 (150)
25 2c2l_A CHIP, carboxy terminus 99.7 1.4E-17 4.7E-22 121.0 6.0 73 16-89 203-276 (281)
26 2f42_A STIP1 homology and U-bo 99.7 2.1E-17 7.2E-22 113.0 6.0 74 15-89 100-174 (179)
27 3ng2_A RNF4, snurf, ring finge 99.7 3.4E-17 1.2E-21 96.1 4.6 56 17-73 6-68 (71)
28 3l11_A E3 ubiquitin-protein li 99.7 1.2E-17 4.2E-22 106.9 2.4 69 17-85 11-86 (115)
29 2ea6_A Ring finger protein 4; 99.7 5E-17 1.7E-21 94.8 4.7 51 17-67 11-68 (69)
30 3hct_A TNF receptor-associated 99.7 2.2E-17 7.4E-22 106.3 3.3 75 14-89 11-86 (118)
31 2d8t_A Dactylidin, ring finger 99.7 2.4E-17 8.1E-22 97.0 2.8 51 17-67 11-61 (71)
32 2xeu_A Ring finger protein 4; 99.6 1.1E-16 3.6E-21 92.0 3.6 50 20-69 2-58 (64)
33 2ct2_A Tripartite motif protei 99.6 1.6E-16 5.5E-21 96.9 4.5 55 15-69 9-70 (88)
34 2ect_A Ring finger protein 126 99.6 2.5E-16 8.6E-21 94.1 4.3 53 17-69 11-66 (78)
35 1g25_A CDK-activating kinase a 99.6 4E-16 1.4E-20 90.1 4.8 54 20-74 2-61 (65)
36 2ecj_A Tripartite motif-contai 99.6 2.7E-16 9.3E-21 88.7 3.8 47 15-61 9-58 (58)
37 3knv_A TNF receptor-associated 99.6 9.3E-17 3.2E-21 106.3 0.9 73 16-88 26-107 (141)
38 1rmd_A RAG1; V(D)J recombinati 99.6 4E-16 1.4E-20 100.0 3.8 70 19-88 21-91 (116)
39 3hcs_A TNF receptor-associated 99.6 4.8E-16 1.6E-20 105.8 4.0 74 14-88 11-85 (170)
40 1iym_A EL5; ring-H2 finger, ub 99.6 7.1E-16 2.4E-20 86.1 4.0 49 18-66 2-54 (55)
41 2ecn_A Ring finger protein 141 99.6 1.6E-16 5.5E-21 93.0 1.0 56 13-69 7-62 (70)
42 2kiz_A E3 ubiquitin-protein li 99.6 2.1E-15 7.1E-20 88.0 4.6 53 16-68 9-64 (69)
43 2l0b_A E3 ubiquitin-protein li 99.6 9.6E-16 3.3E-20 94.3 3.3 51 17-67 36-89 (91)
44 2ep4_A Ring finger protein 24; 99.6 1.7E-15 5.7E-20 89.6 4.1 55 15-69 9-66 (74)
45 2ecm_A Ring finger and CHY zin 99.6 1.7E-15 5.8E-20 84.5 3.8 47 20-66 4-54 (55)
46 1x4j_A Ring finger protein 38; 99.6 1.5E-15 5.3E-20 90.0 3.8 52 17-68 19-73 (75)
47 1chc_A Equine herpes virus-1 r 99.6 1.5E-15 5E-20 88.4 3.5 49 19-67 3-52 (68)
48 1bor_A Transcription factor PM 99.5 2E-15 6.8E-20 84.7 2.4 49 18-69 3-51 (56)
49 4ap4_A E3 ubiquitin ligase RNF 99.5 3.9E-15 1.3E-19 97.0 4.0 51 19-69 5-62 (133)
50 3htk_C E3 SUMO-protein ligase 99.5 2.9E-15 9.9E-20 107.2 3.4 68 18-86 178-250 (267)
51 1e4u_A Transcriptional repress 99.5 2E-14 6.7E-19 85.9 5.2 53 17-69 7-64 (78)
52 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.5E-19 92.1 4.7 51 19-69 23-96 (114)
53 2ecl_A Ring-box protein 2; RNF 99.5 4.4E-14 1.5E-18 85.0 4.3 48 20-67 14-76 (81)
54 4ic3_A E3 ubiquitin-protein li 99.4 2.9E-15 1E-19 88.7 -2.3 47 17-67 20-67 (74)
55 4ap4_A E3 ubiquitin ligase RNF 99.4 5.2E-14 1.8E-18 91.6 2.5 55 18-73 69-130 (133)
56 2ecg_A Baculoviral IAP repeat- 99.4 2.4E-14 8.1E-19 84.9 0.3 48 17-68 21-69 (75)
57 2vje_A E3 ubiquitin-protein li 99.4 2.1E-13 7.2E-18 78.4 2.8 49 19-67 6-57 (64)
58 3dpl_R Ring-box protein 1; ubi 99.4 4.7E-13 1.6E-17 84.3 4.2 47 20-66 36-100 (106)
59 2bay_A PRE-mRNA splicing facto 99.3 2.2E-13 7.5E-18 77.5 1.6 53 21-74 3-56 (61)
60 2y1n_A E3 ubiquitin-protein li 99.3 6E-13 2.1E-17 100.4 4.1 50 20-69 331-381 (389)
61 2vje_B MDM4 protein; proto-onc 99.3 4.4E-13 1.5E-17 76.8 2.3 49 19-67 5-56 (63)
62 2yho_A E3 ubiquitin-protein li 99.2 1.8E-13 6.1E-18 81.9 -2.5 54 11-68 8-62 (79)
63 2ea5_A Cell growth regulator w 99.2 7E-12 2.4E-16 72.8 3.7 47 18-68 12-59 (68)
64 2d8s_A Cellular modulator of i 99.2 8.5E-12 2.9E-16 74.7 4.1 53 17-69 11-72 (80)
65 1wim_A KIAA0161 protein; ring 99.2 1.9E-12 6.5E-17 79.8 1.1 45 20-64 4-61 (94)
66 4a0k_B E3 ubiquitin-protein li 99.2 2.2E-12 7.4E-17 82.5 0.3 48 20-67 47-112 (117)
67 3t6p_A Baculoviral IAP repeat- 99.1 2.5E-12 8.4E-17 96.3 -1.7 47 17-67 291-338 (345)
68 2ct0_A Non-SMC element 1 homol 99.0 3.1E-10 1.1E-14 66.7 5.3 49 19-67 13-64 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.6 3.5E-08 1.2E-12 55.6 4.2 49 19-67 4-59 (60)
70 3vk6_A E3 ubiquitin-protein li 98.6 3.5E-08 1.2E-12 60.4 3.3 46 23-68 3-50 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 98.5 3.3E-08 1.1E-12 73.3 2.0 50 18-67 305-373 (381)
72 3m62_A Ubiquitin conjugation f 98.3 6.4E-07 2.2E-11 74.2 5.4 74 15-89 885-959 (968)
73 3nw0_A Non-structural maintena 97.7 3.6E-05 1.2E-09 54.7 4.1 48 20-67 179-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 97.6 2.7E-05 9.2E-10 47.9 2.1 33 20-52 2-37 (101)
75 2cs3_A Protein C14ORF4, MY039 96.0 0.0063 2.2E-07 35.5 3.3 36 19-54 13-52 (93)
76 3i2d_A E3 SUMO-protein ligase 96.0 0.0064 2.2E-07 45.6 4.1 63 21-84 249-316 (371)
77 4fo9_A E3 SUMO-protein ligase 95.8 0.0091 3.1E-07 44.7 4.1 63 21-84 215-282 (360)
78 2ko5_A Ring finger protein Z; 95.4 0.0066 2.2E-07 36.5 1.7 48 20-68 27-74 (99)
79 1z2q_A LM5-1; membrane protein 92.4 0.076 2.6E-06 31.3 2.2 31 20-50 20-54 (84)
80 1weo_A Cellulose synthase, cat 91.4 0.36 1.2E-05 28.7 4.3 48 20-67 15-70 (93)
81 1x64_A Alpha-actinin-2 associa 89.5 0.45 1.5E-05 27.8 3.8 44 17-68 21-64 (89)
82 2k16_A Transcription initiatio 89.0 0.058 2E-06 31.0 -0.5 51 16-66 13-70 (75)
83 1m3v_A FLIN4, fusion of the LI 88.9 0.35 1.2E-05 30.2 3.1 48 22-69 33-83 (122)
84 1wil_A KIAA1045 protein; ring 88.8 0.69 2.4E-05 27.2 4.0 36 15-51 9-47 (89)
85 2yw8_A RUN and FYVE domain-con 87.6 0.3 1E-05 28.5 2.0 31 20-50 18-52 (82)
86 1weu_A Inhibitor of growth fam 87.4 0.69 2.3E-05 27.6 3.5 46 17-65 32-86 (91)
87 1wen_A Inhibitor of growth fam 87.3 0.61 2.1E-05 26.5 3.1 48 15-65 10-66 (71)
88 1z60_A TFIIH basal transcripti 87.2 0.35 1.2E-05 26.5 2.0 40 22-61 16-58 (59)
89 2lri_C Autoimmune regulator; Z 87.1 0.71 2.4E-05 25.8 3.3 44 19-64 10-59 (66)
90 1joc_A EEA1, early endosomal a 87.1 0.2 6.9E-06 31.8 1.1 30 21-50 69-102 (125)
91 3t7l_A Zinc finger FYVE domain 86.9 0.37 1.3E-05 28.6 2.2 30 21-50 20-53 (90)
92 1vfy_A Phosphatidylinositol-3- 86.7 0.34 1.2E-05 27.6 1.8 28 22-49 12-43 (73)
93 1x62_A C-terminal LIM domain p 86.5 0.53 1.8E-05 26.8 2.7 40 19-66 13-52 (79)
94 2fiy_A Protein FDHE homolog; F 86.0 0.091 3.1E-06 38.6 -1.1 46 19-64 180-231 (309)
95 1x4u_A Zinc finger, FYVE domai 85.9 0.36 1.2E-05 28.2 1.7 30 20-49 13-46 (84)
96 1y02_A CARP2, FYVE-ring finger 85.5 0.31 1.1E-05 30.7 1.3 45 18-62 16-64 (120)
97 2l5u_A Chromodomain-helicase-D 84.9 0.45 1.5E-05 26.1 1.7 45 17-63 7-57 (61)
98 1wfk_A Zinc finger, FYVE domai 84.1 0.52 1.8E-05 27.9 1.8 31 20-50 8-42 (88)
99 1wd2_A Ariadne-1 protein homol 84.0 0.14 4.8E-06 28.2 -0.7 34 21-54 6-47 (60)
100 1rut_X Flinc4, fusion protein 83.0 0.58 2E-05 31.4 2.0 48 20-67 31-81 (188)
101 1wg2_A Zinc finger (AN1-like) 83.0 0.84 2.9E-05 25.4 2.2 27 20-46 14-41 (64)
102 1dvp_A HRS, hepatocyte growth 82.9 0.4 1.4E-05 33.2 1.1 30 20-49 160-193 (220)
103 3zyq_A Hepatocyte growth facto 82.7 0.58 2E-05 32.6 1.9 31 20-50 163-197 (226)
104 2jmo_A Parkin; IBR, E3 ligase, 82.6 0.11 3.8E-06 30.2 -1.6 33 21-53 25-70 (80)
105 2xqn_T Testin, TESS; metal-bin 81.6 1.1 3.8E-05 27.8 2.8 47 20-68 29-76 (126)
106 2jrp_A Putative cytoplasmic pr 80.6 0.074 2.5E-06 31.2 -2.8 11 22-32 3-13 (81)
107 2d8v_A Zinc finger FYVE domain 80.1 1.2 4E-05 24.9 2.1 35 17-52 4-39 (67)
108 3mpx_A FYVE, rhogef and PH dom 79.8 0.36 1.2E-05 36.5 0.0 33 20-52 374-410 (434)
109 2ct7_A Ring finger protein 31; 79.2 0.2 6.9E-06 29.5 -1.3 29 23-51 27-61 (86)
110 2xjy_A Rhombotin-2; oncoprotei 79.1 0.92 3.1E-05 28.4 1.8 48 20-67 28-78 (131)
111 3mjh_B Early endosome antigen 78.8 0.31 1E-05 23.6 -0.4 14 21-34 5-18 (34)
112 1mm2_A MI2-beta; PHD, zinc fin 78.7 0.61 2.1E-05 25.5 0.7 44 19-64 7-56 (61)
113 1x4w_A Hypothetical protein FL 78.4 1.1 3.7E-05 25.2 1.7 27 20-46 14-44 (67)
114 1f62_A Transcription factor WS 78.1 0.85 2.9E-05 23.8 1.2 41 23-63 2-49 (51)
115 2lv9_A Histone-lysine N-methyl 78.0 0.62 2.1E-05 28.1 0.7 44 19-63 26-75 (98)
116 2rgt_A Fusion of LIM/homeobox 77.3 2.8 9.6E-05 27.5 3.8 45 20-66 32-76 (169)
117 1wfl_A Zinc finger protein 216 75.7 2.7 9.1E-05 24.0 2.8 27 20-46 24-51 (74)
118 2cor_A Pinch protein; LIM doma 75.4 3.7 0.00013 23.2 3.6 41 20-68 14-54 (79)
119 1wig_A KIAA1808 protein; LIM d 74.8 2.7 9.1E-05 23.4 2.8 37 22-66 6-42 (73)
120 2o35_A Hypothetical protein DU 74.3 1.3 4.3E-05 26.9 1.3 12 42-53 42-53 (105)
121 3fyb_A Protein of unknown func 74.0 1.3 4.4E-05 26.8 1.3 12 42-53 41-52 (104)
122 2jtn_A LIM domain-binding prot 73.2 2.5 8.5E-05 28.1 2.7 44 22-67 88-131 (182)
123 2lbm_A Transcriptional regulat 73.0 5.6 0.00019 25.7 4.3 45 19-63 61-116 (142)
124 1nyp_A Pinch protein; LIM doma 73.0 2.4 8.1E-05 22.9 2.2 38 22-67 6-43 (66)
125 1wfp_A Zinc finger (AN1-like) 72.6 3.2 0.00011 23.7 2.6 28 19-46 23-51 (74)
126 1wyh_A SLIM 2, skeletal muscle 72.4 3.3 0.00011 22.7 2.8 39 22-68 6-46 (72)
127 2gmg_A Hypothetical protein PF 72.4 0.73 2.5E-05 28.2 -0.1 25 35-64 69-93 (105)
128 3u5n_A E3 ubiquitin-protein li 71.9 0.9 3.1E-05 31.1 0.3 45 19-65 5-55 (207)
129 2jne_A Hypothetical protein YF 71.1 0.28 9.5E-06 29.6 -2.1 40 22-66 33-72 (101)
130 3o36_A Transcription intermedi 71.1 0.94 3.2E-05 30.4 0.3 44 20-65 3-52 (184)
131 2dar_A PDZ and LIM domain prot 70.8 3.2 0.00011 24.1 2.6 41 20-68 24-64 (90)
132 1wff_A Riken cDNA 2810002D23 p 70.0 3.9 0.00013 24.0 2.7 29 19-47 23-53 (85)
133 2d8x_A Protein pinch; LIM doma 69.9 2.1 7.2E-05 23.5 1.5 40 21-68 5-44 (70)
134 2d8z_A Four and A half LIM dom 69.4 3.3 0.00011 22.6 2.3 38 22-67 6-43 (70)
135 3k1f_M Transcription initiatio 69.2 2 6.9E-05 28.9 1.5 29 1-29 1-29 (197)
136 3lqh_A Histone-lysine N-methyl 68.8 1.3 4.3E-05 30.0 0.5 43 22-64 3-63 (183)
137 2cup_A Skeletal muscle LIM-pro 68.8 1.6 5.6E-05 25.8 1.0 46 20-67 32-78 (101)
138 1x6a_A LIMK-2, LIM domain kina 67.9 3.5 0.00012 23.3 2.3 38 22-67 16-53 (81)
139 3v43_A Histone acetyltransfera 67.6 7.6 0.00026 23.7 3.9 31 19-49 3-42 (112)
140 2dj7_A Actin-binding LIM prote 67.6 3.4 0.00012 23.5 2.2 41 19-67 13-54 (80)
141 1v6g_A Actin binding LIM prote 67.4 3.2 0.00011 23.5 2.0 40 22-69 16-55 (81)
142 1zbd_B Rabphilin-3A; G protein 67.3 2.2 7.4E-05 27.3 1.3 31 19-49 53-88 (134)
143 2e6r_A Jumonji/ARID domain-con 67.0 0.64 2.2E-05 27.7 -1.1 47 17-63 12-65 (92)
144 1x4l_A Skeletal muscle LIM-pro 66.5 3.7 0.00013 22.6 2.1 39 21-67 5-47 (72)
145 3ql9_A Transcriptional regulat 66.5 8.3 0.00028 24.4 3.9 44 19-62 55-109 (129)
146 3o70_A PHD finger protein 13; 66.2 0.69 2.4E-05 26.0 -1.1 48 15-63 13-66 (68)
147 1iml_A CRIP, cysteine rich int 65.6 6 0.00021 21.9 2.9 44 20-65 26-71 (76)
148 2cur_A Skeletal muscle LIM-pro 64.5 2.9 0.0001 22.8 1.4 37 22-66 6-42 (69)
149 1x68_A FHL5 protein; four-and- 64.3 3.6 0.00012 22.9 1.8 38 22-67 6-47 (76)
150 2cu8_A Cysteine-rich protein 2 64.3 3.3 0.00011 23.1 1.6 40 21-68 9-49 (76)
151 1x63_A Skeletal muscle LIM-pro 64.1 5.9 0.0002 22.3 2.8 39 22-68 16-56 (82)
152 2yt5_A Metal-response element- 63.8 3 0.0001 22.8 1.4 47 18-64 3-61 (66)
153 2dlo_A Thyroid receptor-intera 63.6 3.1 0.00011 23.5 1.4 39 21-67 15-53 (81)
154 2ffw_A Midline-1; B-BOX, ring 62.2 6.8 0.00023 22.3 2.7 31 20-50 29-62 (78)
155 2cuq_A Four and A half LIM dom 61.7 6.4 0.00022 22.0 2.6 38 22-67 16-53 (80)
156 1fp0_A KAP-1 corepressor; PHD 61.6 4.3 0.00015 24.0 1.8 44 19-64 23-72 (88)
157 3vth_A Hydrogenase maturation 61.3 4.7 0.00016 33.2 2.5 70 17-86 107-214 (761)
158 2l43_A N-teminal domain from h 61.0 8 0.00027 22.6 2.9 51 16-66 20-77 (88)
159 1g47_A Pinch protein; LIM doma 60.9 7.6 0.00026 21.5 2.8 41 20-68 10-52 (77)
160 1x4k_A Skeletal muscle LIM-pro 60.4 5.3 0.00018 21.8 2.0 39 22-68 6-46 (72)
161 2ysm_A Myeloid/lymphoid or mix 60.3 2.4 8.4E-05 25.8 0.6 35 19-53 5-42 (111)
162 2d8y_A Eplin protein; LIM doma 59.7 11 0.00037 21.7 3.4 41 20-68 14-55 (91)
163 2wuj_A Septum site-determining 59.6 15 0.00052 19.6 3.7 33 105-137 19-51 (57)
164 2zet_C Melanophilin; complex, 59.3 4.2 0.00014 26.6 1.6 29 20-48 67-100 (153)
165 1x61_A Thyroid receptor intera 59.1 12 0.0004 20.4 3.3 37 22-66 6-44 (72)
166 1wfh_A Zinc finger (AN1-like) 58.5 5.4 0.00018 22.1 1.7 29 19-47 13-42 (64)
167 2co8_A NEDD9 interacting prote 58.5 13 0.00045 20.9 3.6 42 20-69 14-56 (82)
168 1x3h_A Leupaxin; paxillin fami 57.6 5.6 0.00019 22.3 1.8 39 22-68 16-54 (80)
169 1wep_A PHF8; structural genomi 56.5 8.9 0.00031 21.8 2.6 46 19-65 10-64 (79)
170 3a1b_A DNA (cytosine-5)-methyl 56.5 8.1 0.00028 25.4 2.6 42 20-63 78-133 (159)
171 4ayb_P DNA-directed RNA polyme 56.2 1.5 5.1E-05 22.7 -0.8 29 37-67 7-35 (48)
172 2pv0_B DNA (cytosine-5)-methyl 56.0 7.8 0.00027 29.3 2.8 44 20-63 92-147 (386)
173 3c5k_A HD6, histone deacetylas 54.9 5.5 0.00019 24.4 1.5 25 21-45 24-48 (109)
174 2ku3_A Bromodomain-containing 54.8 10 0.00036 21.2 2.6 47 16-62 11-64 (71)
175 4g9i_A Hydrogenase maturation 54.5 7.5 0.00026 32.0 2.7 51 17-67 102-190 (772)
176 2ro1_A Transcription intermedi 53.8 3.4 0.00012 27.8 0.5 44 21-64 2-49 (189)
177 2ehe_A Four and A half LIM dom 52.9 9.3 0.00032 21.4 2.3 38 22-67 16-55 (82)
178 3ttc_A HYPF, transcriptional r 52.2 9.8 0.00034 30.8 3.0 49 17-65 13-99 (657)
179 2egq_A FHL1 protein; LIM domai 51.8 6.7 0.00023 21.7 1.5 39 22-68 16-59 (77)
180 2iyb_E Testin, TESS, TES; LIM 51.7 6.7 0.00023 21.1 1.5 38 23-68 4-45 (65)
181 1we9_A PHD finger family prote 51.3 5.9 0.0002 21.4 1.2 45 19-63 4-57 (64)
182 4gut_A Lysine-specific histone 50.8 6.7 0.00023 32.3 1.8 34 21-54 13-56 (776)
183 2l4z_A DNA endonuclease RBBP8, 50.2 12 0.00042 23.1 2.6 38 21-66 61-99 (123)
184 2l3k_A Rhombotin-2, linker, LI 49.1 9.8 0.00034 23.4 2.1 32 21-52 36-69 (123)
185 1j2o_A FLIN2, fusion of rhombo 48.7 14 0.00046 22.4 2.7 34 20-53 29-65 (114)
186 1e8j_A Rubredoxin; iron-sulfur 47.3 8.2 0.00028 20.3 1.3 13 17-29 32-44 (52)
187 2cot_A Zinc finger protein 435 47.3 15 0.0005 19.9 2.5 38 19-67 16-58 (77)
188 1l8d_A DNA double-strand break 46.4 5 0.00017 24.3 0.4 12 55-66 47-58 (112)
189 6rxn_A Rubredoxin; electron tr 46.1 6.2 0.00021 20.3 0.6 13 17-29 26-38 (46)
190 2ee8_A Protein ODD-skipped-rel 45.6 35 0.0012 19.4 4.2 16 18-33 14-29 (106)
191 1wev_A Riken cDNA 1110020M19; 45.2 2.1 7.2E-05 25.2 -1.5 47 19-65 14-73 (88)
192 2eps_A POZ-, at HOOK-, and zin 44.9 29 0.00098 17.2 3.5 37 20-67 11-53 (54)
193 2lq6_A Bromodomain-containing 44.9 23 0.0008 20.6 3.1 37 15-51 11-51 (87)
194 1wem_A Death associated transc 44.8 15 0.0005 20.6 2.2 44 20-64 15-70 (76)
195 2jvx_A NF-kappa-B essential mo 44.7 6.2 0.00021 18.0 0.4 11 22-32 4-14 (28)
196 3lay_A Zinc resistance-associa 44.6 63 0.0021 21.4 5.6 62 75-138 74-142 (175)
197 2ctu_A Zinc finger protein 483 44.5 4.4 0.00015 21.6 -0.1 37 20-69 17-53 (73)
198 3ra3_B P2F; coiled coil domain 44.3 21 0.00073 15.6 2.6 19 118-136 5-23 (28)
199 1zfo_A LAsp-1; LIM domain, zin 44.3 15 0.00051 16.8 1.8 26 22-47 4-30 (31)
200 2lce_A B-cell lymphoma 6 prote 43.6 17 0.0006 19.3 2.4 40 17-67 13-57 (74)
201 1b8t_A Protein (CRP1); LIM dom 42.6 20 0.00068 23.8 3.0 24 39-64 161-184 (192)
202 2yql_A PHD finger protein 21A; 42.3 10 0.00035 20.0 1.2 43 18-62 6-54 (56)
203 3asl_A E3 ubiquitin-protein li 41.8 6.5 0.00022 21.9 0.3 41 23-63 20-68 (70)
204 2lcq_A Putative toxin VAPC6; P 41.5 5.5 0.00019 26.0 -0.0 23 38-66 137-159 (165)
205 2puy_A PHD finger protein 21A; 41.3 12 0.00042 19.9 1.4 41 20-62 4-50 (60)
206 2m0e_A Zinc finger and BTB dom 40.9 18 0.00063 14.5 1.8 14 56-69 3-16 (29)
207 2kn9_A Rubredoxin; metalloprot 40.6 11 0.00038 21.8 1.2 13 17-29 56-68 (81)
208 4rxn_A Rubredoxin; electron tr 40.6 8.4 0.00029 20.5 0.6 14 17-30 32-45 (54)
209 3f6q_B LIM and senescent cell 39.7 14 0.00047 19.9 1.5 41 20-68 10-52 (72)
210 2jmi_A Protein YNG1, ING1 homo 39.3 12 0.00041 22.1 1.2 45 17-62 22-74 (90)
211 2kwj_A Zinc finger protein DPF 38.9 14 0.00049 22.5 1.6 28 23-50 3-40 (114)
212 1xwh_A Autoimmune regulator; P 38.7 13 0.00044 20.3 1.3 44 19-64 6-55 (66)
213 2kdx_A HYPA, hydrogenase/ureas 38.6 13 0.00044 22.9 1.4 21 38-64 78-99 (119)
214 4bbr_M Transcription initiatio 38.6 8.1 0.00028 28.5 0.5 52 1-52 1-64 (345)
215 2vnf_A ING 4, P29ING4, inhibit 38.6 11 0.00038 20.2 0.9 44 17-63 6-58 (60)
216 2lv2_A Insulinoma-associated p 38.5 25 0.00084 20.1 2.5 39 19-68 26-69 (85)
217 1erd_A Pheromone ER-2; NMR {Eu 38.1 7.7 0.00026 18.5 0.2 17 36-52 9-25 (40)
218 2jr6_A UPF0434 protein NMA0874 38.1 17 0.00058 20.2 1.7 16 17-32 4-19 (68)
219 1yk4_A Rubredoxin, RD; electro 38.0 9.8 0.00034 20.0 0.6 13 17-29 31-43 (52)
220 3shb_A E3 ubiquitin-protein li 37.5 5.8 0.0002 22.7 -0.4 26 38-63 46-76 (77)
221 2e6s_A E3 ubiquitin-protein li 37.3 6.2 0.00021 22.6 -0.3 41 23-63 28-76 (77)
222 2v3b_B Rubredoxin 2, rubredoxi 37.2 10 0.00034 20.2 0.6 13 17-29 32-44 (55)
223 2lvu_A Zinc finger and BTB dom 42.4 7.5 0.00026 15.7 0.0 14 56-69 3-16 (26)
224 2vpb_A Hpygo1, pygopus homolog 36.2 17 0.00057 19.9 1.4 30 19-48 6-40 (65)
225 1x4v_A Hypothetical protein LO 36.1 32 0.0011 18.8 2.6 38 20-60 11-51 (63)
226 1a7i_A QCRP2 (LIM1); LIM domai 36.0 8.4 0.00029 21.6 0.2 38 22-67 8-46 (81)
227 1dx8_A Rubredoxin; electron tr 35.9 11 0.00037 21.2 0.6 14 17-30 36-49 (70)
228 3h0g_L DNA-directed RNA polyme 35.9 35 0.0012 18.7 2.7 16 54-69 37-52 (63)
229 1vd4_A Transcription initiatio 35.7 2 6.8E-05 22.8 -2.5 41 20-69 13-53 (62)
230 3c6w_A P28ING5, inhibitor of g 35.3 13 0.00046 19.8 0.9 44 17-63 5-57 (59)
231 1wfe_A Riken cDNA 2310008M20 p 35.2 24 0.00081 20.6 2.1 29 18-46 22-53 (86)
232 1klr_A Zinc finger Y-chromosom 35.1 22 0.00077 14.3 1.6 13 56-68 3-15 (30)
233 2k5c_A Uncharacterized protein 34.8 8.5 0.00029 22.4 0.1 11 56-66 9-19 (95)
234 3pwf_A Rubrerythrin; non heme 34.6 15 0.00052 24.2 1.3 9 56-64 154-162 (170)
235 1loi_A Cyclic 3',5'-AMP specif 34.1 2.4 8.4E-05 18.3 -1.7 12 42-53 6-17 (26)
236 1znf_A 31ST zinc finger from X 33.8 19 0.00064 14.3 1.2 12 56-67 2-13 (27)
237 3ask_A E3 ubiquitin-protein li 33.6 7.4 0.00025 27.1 -0.4 41 23-63 176-224 (226)
238 1ard_A Yeast transcription fac 32.4 19 0.00066 14.5 1.1 12 56-67 3-14 (29)
239 2js4_A UPF0434 protein BB2007; 32.3 24 0.00081 19.7 1.7 16 17-32 4-19 (70)
240 1wew_A DNA-binding family prot 32.0 30 0.001 19.4 2.2 47 17-64 12-72 (78)
241 2uzg_A Ubiquitin carboxyl-term 32.0 22 0.00074 21.1 1.6 26 21-46 25-53 (97)
242 2kgg_A Histone demethylase jar 31.6 34 0.0012 17.5 2.2 40 23-62 4-52 (52)
243 2g6q_A Inhibitor of growth pro 31.0 17 0.00059 19.6 0.9 46 17-63 7-59 (62)
244 4gzn_C ZFP-57, zinc finger pro 31.0 23 0.00077 18.7 1.4 37 21-68 4-45 (60)
245 1s24_A Rubredoxin 2; electron 29.3 17 0.00057 21.4 0.7 13 17-29 64-76 (87)
246 1paa_A Yeast transcription fac 29.2 24 0.00082 14.4 1.2 12 56-67 3-14 (30)
247 1p7a_A BF3, BKLF, kruppel-like 29.2 23 0.00077 15.6 1.1 13 55-67 11-23 (37)
248 2epr_A POZ-, at HOOK-, and zin 29.1 48 0.0016 15.7 2.5 15 20-34 11-25 (48)
249 2kpi_A Uncharacterized protein 29.0 14 0.0005 19.6 0.4 16 17-32 6-21 (56)
250 3d00_A Tungsten formylmethanof 28.4 19 0.00066 24.2 1.0 26 19-49 161-186 (191)
251 1lv3_A Hypothetical protein YA 27.8 14 0.00049 20.6 0.2 11 56-66 10-20 (68)
252 1x6e_A Zinc finger protein 24; 27.6 29 0.00099 18.3 1.6 38 19-67 12-54 (72)
253 2lvt_A Zinc finger and BTB dom 33.2 13 0.00045 15.3 0.0 14 56-69 3-16 (29)
254 2lvr_A Zinc finger and BTB dom 32.6 14 0.00047 15.2 0.0 14 56-69 4-17 (30)
255 1rim_A E6APC2 peptide; E6-bind 26.3 36 0.0012 14.6 1.5 12 56-67 3-14 (33)
256 2epq_A POZ-, at HOOK-, and zin 25.8 58 0.002 15.0 2.6 13 21-33 10-22 (45)
257 2e72_A POGO transposable eleme 25.7 41 0.0014 17.3 1.7 13 55-67 12-24 (49)
258 2jny_A Uncharacterized BCR; st 25.6 22 0.00074 19.7 0.7 15 18-32 7-21 (67)
259 2a20_A Regulating synaptic mem 24.7 36 0.0012 18.4 1.5 13 18-30 6-18 (62)
260 2elr_A Zinc finger protein 406 24.6 31 0.0011 14.9 1.1 13 55-67 9-21 (36)
261 1rik_A E6APC1 peptide; E6-bind 24.5 23 0.00078 14.3 0.6 12 57-68 4-15 (29)
262 2g45_A Ubiquitin carboxyl-term 24.2 46 0.0016 20.9 2.1 27 20-46 33-59 (129)
263 1wee_A PHD finger family prote 24.1 21 0.00072 19.7 0.5 47 16-63 11-65 (72)
264 2kvf_A Zinc finger and BTB dom 23.7 24 0.00081 14.2 0.5 12 56-67 4-15 (28)
265 1lko_A Rubrerythrin all-iron(I 23.7 26 0.0009 23.4 1.0 8 57-64 173-180 (191)
266 1twf_L ABC10-alpha, DNA-direct 23.7 45 0.0015 18.6 1.8 14 54-67 44-57 (70)
267 3vhs_A ATPase wrnip1; zinc fin 23.5 20 0.00067 15.9 0.2 13 21-33 6-18 (29)
268 1f2i_G Fusion of N-terminal 17 22.7 50 0.0017 17.2 1.9 39 18-67 16-61 (73)
269 1wii_A Hypothetical UPF0222 pr 22.3 34 0.0012 19.9 1.2 11 16-26 18-28 (85)
270 3jyw_9 60S ribosomal protein L 20.3 69 0.0024 18.0 2.1 11 54-64 25-35 (72)
271 1yuz_A Nigerythrin; rubrythrin 20.0 41 0.0014 22.7 1.4 9 56-64 187-195 (202)
272 2dlq_A GLI-kruppel family memb 20.0 1E+02 0.0034 17.7 3.1 15 20-34 6-20 (124)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.82 E-value=1.1e-20 Score=113.24 Aligned_cols=73 Identities=26% Similarity=0.479 Sum_probs=65.6
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhc-CCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
.++.+++.|+||++.+.+|+.++|||+||..||..|+.. ...||.|+..+...+ +.+|..+.++++.+....+
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~-l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG-LTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC-CEECTTTHHHHHHHHHHSC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh-CccCHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999999999999986 788999999998776 8899999999999877543
No 2
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.82 E-value=2.7e-20 Score=116.17 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCCCCCCcccccccchhhhceecCCC-CcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHITRCG-HTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
...+.+++.||||+++|.+||+++|| |+||..||..|+.....||+|+.++...+ +.+|..+.++++.|.....
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~-L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ-IRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT-SEECHHHHHHHHHHHHHST
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh-ceEcHHHHHHHHHHHHHcc
Confidence 34567899999999999999999999 99999999999998889999999998876 9999999999999987654
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.80 E-value=5e-20 Score=113.68 Aligned_cols=75 Identities=25% Similarity=0.639 Sum_probs=64.8
Q ss_pred cCCCCCCCcccccccchhhhceecC-CCCcccHhhHHHHhhc--CCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcC
Q psy10659 14 QHSPPDNDLLCPICFELIREAHITR-CGHTFCFSCISKCVEL--QIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKS 88 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~--~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
....+.+++.|+||++.|.+|+.++ |||+||..||..|+.. ...||.||..+...+.+.+|..+.++++.+....
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 3456778999999999999999999 9999999999999964 3689999999855555899999999999987653
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.80 E-value=7.7e-20 Score=114.52 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=67.0
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
..+.+.+.||||+++|.+||+++|||+||..||..|+.....||.|+.++...+ +.+|..+.++++.|.....
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~-L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM-LEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS-SEECHHHHHHHHHHHHTTT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh-ceECHHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999998899999999998876 9999999999999987654
No 5
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=5.3e-20 Score=112.12 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=65.1
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhc
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHKIK 87 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
..+.+.+.||||+++|.+||+++|||+||..||..|+.....||.|+.++...+ +.+|..+.++++.|...
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~-l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM-LEPVPELKEQIQAWMRE 79 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG-CEECHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh-cchHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999998899999999998776 99999999999998654
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.77 E-value=9.7e-20 Score=113.88 Aligned_cols=72 Identities=32% Similarity=0.697 Sum_probs=64.0
Q ss_pred CCCCCcccccccchhhhceec-CCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
.+.+.+.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+...+ +.+|..+.++++.++....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~-l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD-LKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh-CCcCHHHHHHHHHHHHHHH
Confidence 445679999999999999988 99999999999999998899999999988766 8899999999998876543
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.76 E-value=2e-19 Score=116.80 Aligned_cols=71 Identities=23% Similarity=0.456 Sum_probs=62.1
Q ss_pred CCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCCCCccchHHHHHHHHHHhc
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMNSVFPNFLLNELVQKHKIK 87 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
.+.+.+.|+||++.+.+|+.++|||+||..||..|+... ..||.||..+.....+.+|..+.++++.+...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 445678999999999999999999999999999999854 58999999998844589999999999887654
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=101.74 Aligned_cols=68 Identities=28% Similarity=0.659 Sum_probs=54.9
Q ss_pred CCCCCCCChhhhhcCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhh---cCCCCCCCCCCCCCCC
Q psy10659 1 MSATSTPSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE---LQIKCPKCSASLPDMN 69 (140)
Q Consensus 1 ms~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C~~~~~~~~ 69 (140)
||+++++.. .......+.+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+||..+...+
T Consensus 1 ~Ss~~~~~~-~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 1 GSSGSSGMA-SGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCCC-CCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CCCcccccc-cHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 455544432 3345567788999999999999999999999999999999996 4568999999887654
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.75 E-value=1.4e-19 Score=113.43 Aligned_cols=75 Identities=27% Similarity=0.531 Sum_probs=63.8
Q ss_pred cCCCCCCCcccccccchhhhcee-cCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 14 QHSPPDNDLLCPICFELIREAHI-TRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
....+.+++.|+||++.+.+|+. ++|||+||..||..|+... ..||.||.++...+ +..+..+..+++.+.....
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE-LVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG-CEECTTHHHHHHHHHHHCC
T ss_pred ccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH-hHhhHHHHHHHHHHHHHHH
Confidence 33456678999999999999999 8999999999999999876 79999999998766 8888888888777665543
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3e-19 Score=108.27 Aligned_cols=65 Identities=32% Similarity=0.711 Sum_probs=55.5
Q ss_pred cCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhc------CCCCCCCCCCCCCCCCCccchHHHH
Q psy10659 14 QHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL------QIKCPKCSASLPDMNSVFPNFLLNE 79 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~C~~~~~~~~~~~~~~~~~~ 79 (140)
....+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+...+ +.+|..+.+
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~n~~l~~ 82 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN-LKPNLHVAN 82 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC-CEECSCCCS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh-CCcCHHHHH
Confidence 34567788999999999999999999999999999999986 678999999988765 777765543
No 11
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=102.41 Aligned_cols=60 Identities=25% Similarity=0.659 Sum_probs=50.8
Q ss_pred CCCCCCCcccccccchhhhceecC-CCCcccHhhHHHHhhcC--CCCCCCCCCCCCCCCCccc
Q psy10659 15 HSPPDNDLLCPICFELIREAHITR-CGHTFCFSCISKCVELQ--IKCPKCSASLPDMNSVFPN 74 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~--~~CP~C~~~~~~~~~~~~~ 74 (140)
...+.+++.|+||++.+.+|+.++ |||+||..||..|+... ..||+||..+...+.+..|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 446678899999999999999999 99999999999999854 7899999987665544444
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=104.26 Aligned_cols=60 Identities=23% Similarity=0.443 Sum_probs=51.7
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHH
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLL 77 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~ 77 (140)
.+..+.+.|+||++.+.+|+.++|||+||..|+..|+.....||+||..+. .. +.+|..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~-~~~~~~l 69 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GI-FNPAKEL 69 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SC-CEECHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-cc-CCcHHHH
Confidence 455678999999999999999999999999999999998899999999886 23 5666444
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-19 Score=107.58 Aligned_cols=64 Identities=30% Similarity=0.691 Sum_probs=55.1
Q ss_pred cCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhc------CCCCCCCCCCCCCCCCCccchHHH
Q psy10659 14 QHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL------QIKCPKCSASLPDMNSVFPNFLLN 78 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~C~~~~~~~~~~~~~~~~~ 78 (140)
....+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+...+ +.+|..+.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~-~~~n~~l~ 81 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN-IRPNRHVA 81 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS-CCCSCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh-cCccHHHH
Confidence 34567788999999999999999999999999999999976 788999999988765 77776543
No 14
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=97.90 Aligned_cols=60 Identities=30% Similarity=0.737 Sum_probs=48.8
Q ss_pred CCCCCCCChhhhhcCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhh---cCCCCCCC
Q psy10659 1 MSATSTPSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE---LQIKCPKC 61 (140)
Q Consensus 1 ms~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 61 (140)
||+.+.... .......+.+++.|+||++.+.+|+.++|||+||..||..|+. ....||+|
T Consensus 1 ~s~~~~~~~-~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 1 GSSGSSGMA-SGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCSSSSCC-CCCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCccccccc-hHHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 565554432 2334556788999999999999999999999999999999997 45689998
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=100.59 Aligned_cols=56 Identities=32% Similarity=0.655 Sum_probs=50.7
Q ss_pred cCCCCCCCcccccccchhhhceec-CCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 14 QHSPPDNDLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
....+++.+.|+||++.+.+|+.+ +|||+||..||..|+.....||+||..+...+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 345677899999999999999987 99999999999999998899999999988766
No 16
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.72 E-value=2e-18 Score=117.14 Aligned_cols=73 Identities=27% Similarity=0.672 Sum_probs=61.0
Q ss_pred CCCCcccccccchhhhceec-CCCCcccHhhHHHHhhc-CCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCCC
Q psy10659 18 PDNDLLCPICFELIREAHIT-RCGHTFCFSCISKCVEL-QIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSAQ 90 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (140)
+.+.+.|+||++.+.+|+.+ +|||+||..||..|+.. ...||.||..+...+.+.+|..+..++..+......
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~~~ 125 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDE 125 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-----
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcchhH
Confidence 34567999999999999987 99999999999999986 788999999997666688999999999998775544
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-19 Score=108.22 Aligned_cols=62 Identities=31% Similarity=0.671 Sum_probs=53.5
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhc-------CCCCCCCCCCCCCCCCCccchHHH
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL-------QIKCPKCSASLPDMNSVFPNFLLN 78 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-------~~~CP~C~~~~~~~~~~~~~~~~~ 78 (140)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+...+ +.+|..+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~-l~~n~~l~ 75 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH-LQANQHLA 75 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG-GGTCSSSC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh-CCcCHHHH
Confidence 456788999999999999999999999999999999975 578999999988765 66776544
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=104.91 Aligned_cols=71 Identities=24% Similarity=0.537 Sum_probs=61.7
Q ss_pred CCCCcccccccchhhhceecC-CCCcccHhhHHHHhhc------CCCCCC--CCCC-CCCCCCCccchHHHHHHHHHHhc
Q psy10659 18 PDNDLLCPICFELIREAHITR-CGHTFCFSCISKCVEL------QIKCPK--CSAS-LPDMNSVFPNFLLNELVQKHKIK 87 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~------~~~CP~--C~~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
..+.+.||||+++|.+||+++ |||+||..||..|+.. ...||+ |+.. +...+ +.+|..+..+++.+...
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~-L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD-LIQDEALRRAIENHNKK 82 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG-EEECHHHHHHHHHHHTT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh-CcCCHHHHHHHHHHHHH
Confidence 356899999999999999996 9999999999999974 358999 8876 66666 99999999999999876
Q ss_pred CC
Q psy10659 88 SA 89 (140)
Q Consensus 88 ~~ 89 (140)
..
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 54
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.71 E-value=5.2e-18 Score=112.02 Aligned_cols=65 Identities=31% Similarity=0.674 Sum_probs=53.9
Q ss_pred CCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHH
Q psy10659 18 PDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHK 85 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~ 85 (140)
+++++.|+||++.+.+|++++|||+||..||..|+.....||.||.++... ..+..+...+..+.
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~---~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK---TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE---EECHHHHHHHHHHH
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC---CCccchhHHHHHHH
Confidence 345689999999999999999999999999999999999999999988653 34555655555543
No 20
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.71 E-value=4.5e-18 Score=107.84 Aligned_cols=70 Identities=24% Similarity=0.535 Sum_probs=61.4
Q ss_pred CCCCCcccccccchhhhceec-CCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC---CCccchHHHHHHHHHHh
Q psy10659 17 PPDNDLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQIKCPKCSASLPDMN---SVFPNFLLNELVQKHKI 86 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~---~~~~~~~~~~~~~~~~~ 86 (140)
.+.+++.|+||++.+.+|+.+ +|||+||..||..|+.....||.|+..+.... .+.+|..+.++++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 345789999999999999997 99999999999999998899999999988752 36788999988887755
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.71 E-value=6.5e-19 Score=112.25 Aligned_cols=75 Identities=28% Similarity=0.599 Sum_probs=60.8
Q ss_pred hhhcCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcC---CCCCCCCCCCCCCCCCccchHHHHHHHHHHh
Q psy10659 11 LKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ---IKCPKCSASLPDMNSVFPNFLLNELVQKHKI 86 (140)
Q Consensus 11 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (140)
+......+.+.+.|+||++.+.+|+.++|||+||..|+..|+... ..||.||..+.... +.+|..+..+++.+..
T Consensus 11 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS-LQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT-CBCCCSSSHHHHHHHH
T ss_pred HHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh-cCccHHHHHHHHHHHH
Confidence 333333455678999999999999999999999999999999854 48999999988776 7777777777766654
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9e-18 Score=97.40 Aligned_cols=56 Identities=25% Similarity=0.584 Sum_probs=49.3
Q ss_pred cCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhh-cCCCCCCCCCCCCCCC
Q psy10659 14 QHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-LQIKCPKCSASLPDMN 69 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~C~~~~~~~~ 69 (140)
....+.+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||.||..+...+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 3456678899999999999999999999999999999995 5678999999887654
No 23
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.71 E-value=1.7e-18 Score=111.38 Aligned_cols=70 Identities=26% Similarity=0.519 Sum_probs=61.8
Q ss_pred CCCCCCCcccccccchhhhceec-CCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhc
Q psy10659 15 HSPPDNDLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHKIK 87 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
...+.+.+.|+||++.+.+|+.+ +|||+||..||..|+. ..||.|+..+...+ +.+|..+.++++.+...
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~-~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD-LKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS-CCCCHHHHHHHHHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc-ccccHHHHHHHHHHHHH
Confidence 34556789999999999999999 9999999999999987 78999999987666 89999999999887653
No 24
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=112.02 Aligned_cols=69 Identities=26% Similarity=0.594 Sum_probs=61.5
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCCCCccchHHHHHHHHHHhc
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMNSVFPNFLLNELVQKHKIK 87 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
.+.+.|+||++.+.+|+.++|||+||..||..|+... ..||.||..+.....+.+|..+.++++.+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999999999999999999865 48999999999874489999999999988653
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=1.4e-17 Score=121.03 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=65.0
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhc-CCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
.++.+.+.||||+++|.+||+++|||+||..||..|+.. ...||+|+.++...+ +.+|..+.++++.|....+
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~-l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ-LIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG-CEECHHHHHHHHHHHTTCS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc-CcccHHHHHHHHHHHHHCC
Confidence 356688999999999999999999999999999999985 445999999998776 9999999999999987654
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.69 E-value=2.1e-17 Score=112.97 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=66.1
Q ss_pred CCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
...+.+.+.||||+++|.+||+++|||+||..||..|+... ..||+|+.++...+ +.+|..+.++++.+....+
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~-L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ-LIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHCT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh-CcchHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999999999999999753 46999999998776 9999999999999987654
No 27
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.68 E-value=3.4e-17 Score=96.10 Aligned_cols=56 Identities=30% Similarity=0.788 Sum_probs=49.3
Q ss_pred CCCCCcccccccchhhhc-------eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCcc
Q psy10659 17 PPDNDLLCPICFELIREA-------HITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFP 73 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~ 73 (140)
..++++.|+||++.+.+| +.++|||+||..|+..|+.....||+||..+...+ +.+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~-~~~ 68 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR-YHP 68 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS-CCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh-eee
Confidence 345689999999999998 78899999999999999998899999999988766 444
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=106.93 Aligned_cols=69 Identities=30% Similarity=0.633 Sum_probs=57.0
Q ss_pred CCCCCcccccccchhhhceecCCCCcccHhhHHHHhhc-CCCCCCCCCCCCC------CCCCccchHHHHHHHHHH
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASLPD------MNSVFPNFLLNELVQKHK 85 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~C~~~~~~------~~~~~~~~~~~~~~~~~~ 85 (140)
...+++.|+||++.+.+|+.++|||+||..||..|+.. ...||.||..+.. ...+.+|..+..++..+.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 44568999999999999999999999999999999975 6789999998764 123567777777777664
No 29
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=94.78 Aligned_cols=51 Identities=31% Similarity=0.830 Sum_probs=46.2
Q ss_pred CCCCCcccccccchhhhc-------eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREA-------HITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
...+...|+||++.+.+| +.++|||.||..||..|+.....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456789999999999988 788999999999999999988999999998764
No 30
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.67 E-value=2.2e-17 Score=106.31 Aligned_cols=75 Identities=32% Similarity=0.635 Sum_probs=65.1
Q ss_pred cCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 14 QHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
....+.+.+.|+||++.+.+|+.++|||+||..||..|+... ..||.||..+.... +.++..+...+..+.....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~l~~~i~~l~v~C~ 86 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ-LFPDNFAKREILSLMVKCP 86 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG-CEECHHHHHHHHTSEEECS
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh-cccCHHHHHHHccceeECC
Confidence 456788899999999999999999999999999999999865 49999999988766 7788888888887776653
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=96.97 Aligned_cols=51 Identities=25% Similarity=0.668 Sum_probs=46.6
Q ss_pred CCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
...+.+.|+||++.+.+|+.++|||+||..||..|+.....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 445778999999999999999999999999999999988999999998764
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=92.02 Aligned_cols=50 Identities=30% Similarity=0.767 Sum_probs=45.8
Q ss_pred CCcccccccchhhhc-------eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREA-------HITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
+++.|+||++.+.+| +.++|||.||..|+..|+.....||.||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 568999999999987 77899999999999999998999999999988765
No 33
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=96.87 Aligned_cols=55 Identities=33% Similarity=0.728 Sum_probs=48.3
Q ss_pred CCCCCCCcccccccchhhh----ceecCCCCcccHhhHHHHhhcC---CCCCCCCCCCCCCC
Q psy10659 15 HSPPDNDLLCPICFELIRE----AHITRCGHTFCFSCISKCVELQ---IKCPKCSASLPDMN 69 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~---~~CP~C~~~~~~~~ 69 (140)
...+.+.+.|+||++.+.+ |+.++|||+||..|+..|+... ..||.||..+...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4466788999999999998 9999999999999999999865 78999999876643
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=2.5e-16 Score=94.06 Aligned_cols=53 Identities=34% Similarity=0.592 Sum_probs=46.5
Q ss_pred CCCCCcccccccchhhhc---eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREA---HITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
...+...|+||++.|.++ +.++|||.||..||..|+.....||+||..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 456789999999999866 44699999999999999998899999999988765
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.62 E-value=4e-16 Score=90.08 Aligned_cols=54 Identities=31% Similarity=0.655 Sum_probs=45.4
Q ss_pred CCcccccccc-hhhhc----eecCCCCcccHhhHHHHhhc-CCCCCCCCCCCCCCCCCccc
Q psy10659 20 NDLLCPICFE-LIREA----HITRCGHTFCFSCISKCVEL-QIKCPKCSASLPDMNSVFPN 74 (140)
Q Consensus 20 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~-~~~CP~C~~~~~~~~~~~~~ 74 (140)
+++.|+||++ .+.+| +.++|||+||..|+..|+.. ...||.||..+...+ +.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN-FRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC-CEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc-ceee
Confidence 5689999999 99998 46799999999999999764 577999999988766 5443
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=88.66 Aligned_cols=47 Identities=34% Similarity=0.887 Sum_probs=41.6
Q ss_pred CCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhh---cCCCCCCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE---LQIKCPKC 61 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~---~~~~CP~C 61 (140)
...+.+.+.|+||++.+.+|+.++|||+||..||..|+. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 346678899999999999999999999999999999954 46789988
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.60 E-value=9.3e-17 Score=106.35 Aligned_cols=73 Identities=21% Similarity=0.481 Sum_probs=58.2
Q ss_pred CCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCC--------CCccchHHHHHHHHHHh
Q psy10659 16 SPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMN--------SVFPNFLLNELVQKHKI 86 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~--------~~~~~~~~~~~~~~~~~ 86 (140)
..+++.+.|+||++.+.+|+.++|||+||..||..|+... ..||.||.++.... .+.++..+...+..+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence 4678899999999999999999999999999999999855 48999998754321 24567677777766655
Q ss_pred cC
Q psy10659 87 KS 88 (140)
Q Consensus 87 ~~ 88 (140)
..
T Consensus 106 ~C 107 (141)
T 3knv_A 106 VC 107 (141)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 38
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.60 E-value=4e-16 Score=99.99 Aligned_cols=70 Identities=23% Similarity=0.524 Sum_probs=57.2
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHhhc-CCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVEL-QIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKS 88 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
.+.+.|+||++.+.+|+.++|||+||..||..|+.. ...||.||..+...+...++..+.+++..+...-
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C 91 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKC 91 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEEC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999999986 6789999999887663345566666666555543
No 39
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.60 E-value=4.8e-16 Score=105.84 Aligned_cols=74 Identities=32% Similarity=0.642 Sum_probs=64.0
Q ss_pred cCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcC-CCCCCCCCCCCCCCCCccchHHHHHHHHHHhcC
Q psy10659 14 QHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDMNSVFPNFLLNELVQKHKIKS 88 (140)
Q Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
....+++.+.|+||++++.+|+.++|||+||..||..|+... ..||.||..+...+ +.++..+...+..+...-
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~-~~~~~~~~~~i~~l~v~C 85 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ-LFPDNFAKREILSLMVKC 85 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG-CEECHHHHHHHHTSEEEC
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh-hhhhHHHHHHHhhcccCC
Confidence 566888999999999999999999999999999999999754 59999999988766 778888888877766554
No 40
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=7.1e-16 Score=86.08 Aligned_cols=49 Identities=24% Similarity=0.702 Sum_probs=43.3
Q ss_pred CCCCcccccccchhhh---ceecC-CCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 18 PDNDLLCPICFELIRE---AHITR-CGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
+++...|+||++.+.+ ++.++ |||.||..|+..|+.....||+||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4678899999999987 66776 9999999999999999999999998763
No 41
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-16 Score=93.04 Aligned_cols=56 Identities=27% Similarity=0.625 Sum_probs=49.3
Q ss_pred hcCCCCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 13 RQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 13 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
.......+...|+||++.+.+ +.++|||.||..|+..|+.....||+||..+...+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 7 GRVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred hhhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 334566788999999999998 88999999999999999998899999999887654
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=88.00 Aligned_cols=53 Identities=23% Similarity=0.614 Sum_probs=45.1
Q ss_pred CCCCCCcccccccchhh---hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 16 SPPDNDLLCPICFELIR---EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
....+...|+||++.+. .++.++|||.||..|+..|+.....||+||..+...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34556789999999885 346789999999999999999888999999987753
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-16 Score=94.25 Aligned_cols=51 Identities=27% Similarity=0.620 Sum_probs=44.7
Q ss_pred CCCCCcccccccchhhh---ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIRE---AHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
...++..|+||++.+.. ++.++|||.||..||..|+.....||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567899999999876 6778999999999999999988999999987754
No 44
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=89.58 Aligned_cols=55 Identities=24% Similarity=0.567 Sum_probs=47.0
Q ss_pred CCCCCCCcccccccchhhhceec---CCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHIT---RCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
..+..++..|+||++.+.++..+ +|||.||..||..|+.....||+||..+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 34567789999999999877543 99999999999999998889999999887644
No 45
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.57 E-value=1.7e-15 Score=84.46 Aligned_cols=47 Identities=34% Similarity=0.770 Sum_probs=42.0
Q ss_pred CCcccccccchhhh----ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE----AHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 20 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
+...|+||++.+.+ ++.++|||.||..|+..|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56889999999965 677899999999999999998899999998764
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=90.01 Aligned_cols=52 Identities=23% Similarity=0.573 Sum_probs=45.4
Q ss_pred CCCCCcccccccchhhhc---eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREA---HITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
...+...|+||++.+..+ +.++|||.||..||..|+.....||+||..+...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345678999999999877 6679999999999999999889999999987653
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.56 E-value=1.5e-15 Score=88.37 Aligned_cols=49 Identities=29% Similarity=0.723 Sum_probs=44.0
Q ss_pred CCCcccccccchhhhc-eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREA-HITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
++...|+||++.+.+| +.++|||.||..|+..|+.....||.||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3567899999999997 678999999999999999988999999998764
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.54 E-value=2e-15 Score=84.73 Aligned_cols=49 Identities=27% Similarity=0.553 Sum_probs=42.8
Q ss_pred CCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 18 PDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
..+.+.|+||++.+.+|+.++|||+||..|+.. ....||+||..+....
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 457899999999999999999999999999877 3678999999877543
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.53 E-value=3.9e-15 Score=96.98 Aligned_cols=51 Identities=29% Similarity=0.780 Sum_probs=47.1
Q ss_pred CCCcccccccchhhhc-------eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREA-------HITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
.+.+.|+||++.+.+| +.++|||+||..||.+|+.....||.||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4679999999999999 88999999999999999999999999999988765
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.9e-15 Score=107.22 Aligned_cols=68 Identities=21% Similarity=0.402 Sum_probs=59.5
Q ss_pred CCCCcccccccchhhhceec-CCCCcccHhhHHHHhhcC--CCCCC--CCCCCCCCCCCccchHHHHHHHHHHh
Q psy10659 18 PDNDLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQ--IKCPK--CSASLPDMNSVFPNFLLNELVQKHKI 86 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~--~~CP~--C~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (140)
....+.||||+++|.+||+. .|||+||+.||..|+... ..||+ |+..+...+ +.+|..+..+++.++.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d-L~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD-FVRDPIMELRCKIAKM 250 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG-EEECHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh-CCcCHHHHHHHHHHHH
Confidence 35678999999999999985 999999999999999753 57999 999888777 9999999999877654
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.51 E-value=2e-14 Score=85.87 Aligned_cols=53 Identities=23% Similarity=0.645 Sum_probs=43.2
Q ss_pred CCCCCcccccccchhh--hceecC--CCCcccHhhHHHHhh-cCCCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIR--EAHITR--CGHTFCFSCISKCVE-LQIKCPKCSASLPDMN 69 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~--~p~~~~--CgH~fC~~Ci~~~~~-~~~~CP~C~~~~~~~~ 69 (140)
.+++++.||||++.+. ++..++ |||+||..|+..++. ....||.||+++....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3567899999999884 445555 999999999999985 4578999999887655
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=1.6e-14 Score=92.10 Aligned_cols=51 Identities=25% Similarity=0.611 Sum_probs=42.6
Q ss_pred CCCcccccccchhhhce------------------ecCCCCcccHhhHHHHhh-----cCCCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAH------------------ITRCGHTFCFSCISKCVE-----LQIKCPKCSASLPDMN 69 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~-----~~~~CP~C~~~~~~~~ 69 (140)
..+..|+||++.|.++. .++|||.||..||..|+. ....||+||..+....
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 34569999999997764 679999999999999994 4678999999887654
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=84.98 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=40.7
Q ss_pred CCcccccccchhhh--------------ceec-CCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE--------------AHIT-RCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~--------------p~~~-~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
++..|+||++.+.+ ++.+ +|||.||..||.+|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 46779999999876 3444 599999999999999999999999988754
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.43 E-value=2.9e-15 Score=88.68 Aligned_cols=47 Identities=28% Similarity=0.624 Sum_probs=42.4
Q ss_pred CCCCCcccccccchhhhceecCCCCc-ccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHT-FCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
.+.+++.|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 44567899999999999999999999 999999988 889999998765
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.42 E-value=5.2e-14 Score=91.60 Aligned_cols=55 Identities=29% Similarity=0.752 Sum_probs=48.2
Q ss_pred CCCCcccccccchhhhc-------eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCcc
Q psy10659 18 PDNDLLCPICFELIREA-------HITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFP 73 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~ 73 (140)
.++...|+||++.+.++ +.++|||+||..|+.+|+.....||+||..+...+ +.+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~-~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR-YHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG-EEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc-cee
Confidence 35678999999999987 77899999999999999999999999999887655 443
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.4e-14 Score=84.93 Aligned_cols=48 Identities=27% Similarity=0.591 Sum_probs=41.8
Q ss_pred CCCCCcccccccchhhhceecCCCCc-ccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHT-FCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
.+.+...|+||++.+.+|+.++|||. ||..|+.. ...||+||..+...
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 34567899999999999999999999 99999964 47899999988764
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.37 E-value=2.1e-13 Score=78.39 Aligned_cols=49 Identities=27% Similarity=0.574 Sum_probs=44.0
Q ss_pred CCCcccccccchhhhceec--CCCCc-ccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHT-FCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
.++..|+||++...+++.+ ||||. ||..|+..|......||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3567899999999999977 99999 8999999999988899999998753
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.36 E-value=4.7e-13 Score=84.32 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=41.0
Q ss_pred CCcccccccchhhhc------------------eecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREA------------------HITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
++..|+||++.|.++ +.++|||.||..||..|+..+..||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999998865 33699999999999999999999999998764
No 59
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.34 E-value=2.2e-13 Score=77.55 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=47.3
Q ss_pred Ccccccccchhhhceec-CCCCcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccc
Q psy10659 21 DLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPN 74 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~ 74 (140)
.+.|||+++.+.+||.+ ++||+|++.||.+|+..+..||+.+.++...+ +.++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~-Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE-IVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG-CEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh-cEEC
Confidence 47899999999999999 99999999999999987778999999998776 5554
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.33 E-value=6e-13 Score=100.43 Aligned_cols=50 Identities=32% Similarity=0.699 Sum_probs=45.1
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhh-cCCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVE-LQIKCPKCSASLPDMN 69 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~C~~~~~~~~ 69 (140)
....|+||++.+.+|+.++|||.||..|+..|+. ....||.||..+....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3479999999999999999999999999999998 6789999999887643
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.32 E-value=4.4e-13 Score=76.79 Aligned_cols=49 Identities=27% Similarity=0.605 Sum_probs=43.5
Q ss_pred CCCcccccccchhhhceec--CCCCc-ccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHT-FCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
+....|+||++...+++.+ ||||. ||..|+..|......||+||.++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3457899999999999877 99998 9999999999888899999998754
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.24 E-value=1.8e-13 Score=81.93 Aligned_cols=54 Identities=28% Similarity=0.671 Sum_probs=44.4
Q ss_pred hhhcCCCCCCCcccccccchhhhceecCCCCc-ccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 11 LKRQHSPPDNDLLCPICFELIREAHITRCGHT-FCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 11 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
+......+.+...|+||++.+.+++.+||||. ||..|+..| ..||+||..+...
T Consensus 8 l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 8 LQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred HHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 33334445567899999999999999999999 999999876 3899999987653
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7e-12 Score=72.82 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=41.1
Q ss_pred CCCCcccccccchhhhceecCCCCc-ccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 18 PDNDLLCPICFELIREAHITRCGHT-FCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
..+...|+||++...+++.+||||. ||..|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3457899999999999999999999 99999984 57899999987653
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.5e-12 Score=74.65 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=43.3
Q ss_pred CCCCCcccccccchhh--hceecCCC-----CcccHhhHHHHhhcC--CCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIR--EAHITRCG-----HTFCFSCISKCVELQ--IKCPKCSASLPDMN 69 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~C~~~~~~~~ 69 (140)
...+...|+||++.+. +++++||+ |.||..||.+|+..+ ..||+|+..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456789999998874 56778996 999999999999754 58999999887644
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1.9e-12 Score=79.79 Aligned_cols=45 Identities=31% Similarity=0.789 Sum_probs=38.0
Q ss_pred CCcccccccchhhhceec---CCCCcccHhhHHHHhhc--------CCCCCC--CCCC
Q psy10659 20 NDLLCPICFELIREAHIT---RCGHTFCFSCISKCVEL--------QIKCPK--CSAS 64 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~--------~~~CP~--C~~~ 64 (140)
+.+.|+||++.+..|..+ +|||.||..|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 568999999999888654 79999999999999862 247999 9876
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.19 E-value=2.2e-12 Score=82.47 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=0.9
Q ss_pred CCcccccccchhhhce------------------ecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAH------------------ITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
++..|+||++.|.++. .++|||.||..||..|+.....||+||..+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3468999999997642 24899999999999999999999999987543
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.13 E-value=2.5e-12 Score=96.25 Aligned_cols=47 Identities=23% Similarity=0.641 Sum_probs=42.3
Q ss_pred CCCCCcccccccchhhhceecCCCCc-ccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHT-FCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
.+.+++.|+||++.+.+|+.++|||. ||..|+..| ..||.||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 44577999999999999999999999 999999977 789999998764
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=3.1e-10 Score=66.67 Aligned_cols=49 Identities=27% Similarity=0.739 Sum_probs=41.0
Q ss_pred CCCcccccccchhhhcee-cCCCCcccHhhHHHHhhcC--CCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHI-TRCGHTFCFSCISKCVELQ--IKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~CP~C~~~~~~ 67 (140)
+....|.||.+.+..-.. ..|+|.|+..||..|++.. ..||+|+.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 455799999999975443 3899999999999999876 889999987654
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.64 E-value=3.5e-08 Score=55.60 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=39.8
Q ss_pred CCCcccccccchhhhceecCCC--C---cccHhhHHHHhh--cCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCG--H---TFCFSCISKCVE--LQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~Cg--H---~fC~~Ci~~~~~--~~~~CP~C~~~~~~ 67 (140)
++...|.||++...++..+||. + .|+..|+.+|+. ++..||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4567899999987777777864 4 899999999996 36789999987653
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.58 E-value=3.5e-08 Score=60.39 Aligned_cols=46 Identities=26% Similarity=0.638 Sum_probs=38.1
Q ss_pred ccccccchhhhce-ecCCCCcccHhhHHHHhh-cCCCCCCCCCCCCCC
Q psy10659 23 LCPICFELIREAH-ITRCGHTFCFSCISKCVE-LQIKCPKCSASLPDM 68 (140)
Q Consensus 23 ~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~-~~~~CP~C~~~~~~~ 68 (140)
.|++|.-.+..-. .+||+|+||.+|+..|.+ +...||.|+.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 5888988777654 569999999999999985 568899999987653
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.49 E-value=3.3e-08 Score=73.30 Aligned_cols=50 Identities=24% Similarity=0.550 Sum_probs=39.7
Q ss_pred CCCCcccccccchhhh----ce----ecCCCCcccHhhHHHHhhcC-----------CCCCCCCCCCCC
Q psy10659 18 PDNDLLCPICFELIRE----AH----ITRCGHTFCFSCISKCVELQ-----------IKCPKCSASLPD 67 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~----p~----~~~CgH~fC~~Ci~~~~~~~-----------~~CP~C~~~~~~ 67 (140)
.+....|+||...+.+ |. ..+|||.||..|+.+|+++. ..||.|+.+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4567899999998876 31 23799999999999999742 469999997764
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.31 E-value=6.4e-07 Score=74.16 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCCCCCCcccccccchhhhceecCCC-CcccHhhHHHHhhcCCCCCCCCCCCCCCCCCccchHHHHHHHHHHhcCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHITRCG-HTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNELVQKHKIKSA 89 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
..++++.+.|||-.+++.+||+++-| ++|=+..|.+|+....+||.-|.+++... +.||..+...++.|.....
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~-liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED-VTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG-CEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc-ccccHHHHHHHHHHHHHHH
Confidence 35778899999999999999999998 69999999999998899999999998877 8999999999999976543
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.67 E-value=3.6e-05 Score=54.68 Aligned_cols=48 Identities=25% Similarity=0.719 Sum_probs=39.3
Q ss_pred CCcccccccchhhhceec-CCCCcccHhhHHHHhhcC--CCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHIT-RCGHTFCFSCISKCVELQ--IKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~--~~CP~C~~~~~~ 67 (140)
....|.||.++......- .|+|.||..|+..|++.. ..||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467899999988865543 499999999999999754 589999987544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.59 E-value=2.7e-05 Score=47.90 Aligned_cols=33 Identities=21% Similarity=0.603 Sum_probs=28.0
Q ss_pred CCcccccccch-hhhcee--cCCCCcccHhhHHHHh
Q psy10659 20 NDLLCPICFEL-IREAHI--TRCGHTFCFSCISKCV 52 (140)
Q Consensus 20 ~~~~C~IC~~~-~~~p~~--~~CgH~fC~~Ci~~~~ 52 (140)
+++.|+||.+. +.+|+. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 46899999975 677887 8999999999999843
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.04 E-value=0.0063 Score=35.52 Aligned_cols=36 Identities=33% Similarity=0.961 Sum_probs=31.0
Q ss_pred CCCcccccccchhhhceecCC----CCcccHhhHHHHhhc
Q psy10659 19 DNDLLCPICFELIREAHITRC----GHTFCFSCISKCVEL 54 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~~ 54 (140)
...+.|.+|.+-+.+.....| +|.||..|-..+++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 467999999999998876655 899999999999863
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0064 Score=45.62 Aligned_cols=63 Identities=21% Similarity=0.503 Sum_probs=48.3
Q ss_pred Ccccccccchhhhceec-CCCCcccHhh--HHHHhh--cCCCCCCCCCCCCCCCCCccchHHHHHHHHH
Q psy10659 21 DLLCPICFELIREAHIT-RCGHTFCFSC--ISKCVE--LQIKCPKCSASLPDMNSVFPNFLLNELVQKH 84 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~-~CgH~fC~~C--i~~~~~--~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
.+.||+-...+..|+.. .|.|.-|.+- +..... ..-.||+|.+.+...+ +..+..+..++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d-L~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN-LAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG-EEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH-eeEcHHHHHHHHhc
Confidence 47999999999999875 8999966654 333332 3467999999888877 88898887776554
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.78 E-value=0.0091 Score=44.65 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=48.2
Q ss_pred Ccccccccchhhhceec-CCCCcccHhh--HHHHhh--cCCCCCCCCCCCCCCCCCccchHHHHHHHHH
Q psy10659 21 DLLCPICFELIREAHIT-RCGHTFCFSC--ISKCVE--LQIKCPKCSASLPDMNSVFPNFLLNELVQKH 84 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~-~CgH~fC~~C--i~~~~~--~~~~CP~C~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
.+.||+-...+..|+.. .|.|.-|.+- +..... ..-.||+|++.+...+ +..+..+.+++...
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d-L~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES-LILDGLFMEILNDC 282 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG-EEEBHHHHHHHTTC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH-eEEcHHHHHHHHhC
Confidence 46899999999999875 8999966543 333333 3467999999988877 88898888887653
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.38 E-value=0.0066 Score=36.54 Aligned_cols=48 Identities=21% Similarity=0.620 Sum_probs=37.6
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
.-+.|..|.-..+. .+.-..|-+|..|+...+..+..||+|+.++..+
T Consensus 27 G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 35688888866552 2224589999999999999999999999987654
No 79
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=92.36 E-value=0.076 Score=31.27 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHHH
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCISK 50 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (140)
+...|.+|...|.-- .--.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 456899999988632 1237999999999653
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.43 E-value=0.36 Score=28.68 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=36.2
Q ss_pred CCcccccccchhhh-----ceec--CCCCcccHhhHHHHhh-cCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE-----AHIT--RCGHTFCFSCISKCVE-LQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~-~~~~CP~C~~~~~~ 67 (140)
....|.||.+..-. +.+. .|+--.|+.|+.--.+ ....||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 35789999997642 3332 6898999999975443 67889999998764
No 81
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=89.53 E-value=0.45 Score=27.83 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCCCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
.......|.-|...+...++..-+..|+..| +.|-.|+..+...
T Consensus 21 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCCSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4455678999999887766667888888887 5688999888654
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.00 E-value=0.058 Score=30.96 Aligned_cols=51 Identities=22% Similarity=0.523 Sum_probs=34.5
Q ss_pred CCCCCCcccccccchhhhc-eec--CCCCcccHhhHHHHhh----cCCCCCCCCCCCC
Q psy10659 16 SPPDNDLLCPICFELIREA-HIT--RCGHTFCFSCISKCVE----LQIKCPKCSASLP 66 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p-~~~--~CgH~fC~~Ci~~~~~----~~~~CP~C~~~~~ 66 (140)
++-.+...|++|....... .+. .|..-|+..|+..-.. ....||.|...+.
T Consensus 13 ~~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred ccCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3345667899999876442 332 7889999999864332 2457999976543
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=88.87 E-value=0.35 Score=30.16 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=37.5
Q ss_pred cccccccchhhh---ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIRE---AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
+.|..|...+.+ .....=|..||..|..+.+.....|..|..++....
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 789999998862 345577889999999887755558999999887644
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.81 E-value=0.69 Score=27.19 Aligned_cols=36 Identities=22% Similarity=0.532 Sum_probs=26.6
Q ss_pred CCCCCCCcccccccchhhhceec---CCCCcccHhhHHHH
Q psy10659 15 HSPPDNDLLCPICFELIREAHIT---RCGHTFCFSCISKC 51 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~ 51 (140)
.+.+..+..|.||.-.- ....+ -|+.+|+..|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 34566889999997533 33344 58999999999986
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=87.61 E-value=0.3 Score=28.52 Aligned_cols=31 Identities=32% Similarity=0.746 Sum_probs=22.9
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHHH
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCISK 50 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (140)
+...|.+|...|.-- .--.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 446899999988632 1237999999999653
No 86
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.37 E-value=0.69 Score=27.64 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=30.3
Q ss_pred CCCCCcccccccchhhhceec--C--CC-CcccHhhHHHHhh----cCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT--R--CG-HTFCFSCISKCVE----LQIKCPKCSASL 65 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~----~~~~CP~C~~~~ 65 (140)
+..+...| ||.......++. . |. .-||..|+. +. ....||.|+...
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44567888 999865543322 3 55 569999986 32 346799997643
No 87
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=87.27 E-value=0.61 Score=26.46 Aligned_cols=48 Identities=25% Similarity=0.676 Sum_probs=31.9
Q ss_pred CCCCCCCcccccccchhhhceec--C--CC-CcccHhhHHHHhh----cCCCCCCCCCCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHIT--R--CG-HTFCFSCISKCVE----LQIKCPKCSASL 65 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~----~~~~CP~C~~~~ 65 (140)
..+..+...| ||.......++. . |. .-||..|+. +. ....||.|...-
T Consensus 10 ~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3345667889 899865444333 4 65 589999987 32 346799997643
No 88
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=87.24 E-value=0.35 Score=26.52 Aligned_cols=40 Identities=25% Similarity=0.663 Sum_probs=29.2
Q ss_pred cccccccchhhhce-e--cCCCCcccHhhHHHHhhcCCCCCCC
Q psy10659 22 LLCPICFELIREAH-I--TRCGHTFCFSCISKCVELQIKCPKC 61 (140)
Q Consensus 22 ~~C~IC~~~~~~p~-~--~~CgH~fC~~Ci~~~~~~~~~CP~C 61 (140)
..|--|...+.+.. . ..|++.||.+|=.-.-+.-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45888998886544 2 3799999999955333455779988
No 89
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=87.11 E-value=0.71 Score=25.78 Aligned_cols=44 Identities=18% Similarity=0.494 Sum_probs=31.7
Q ss_pred CCCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCSAS 64 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~~ 64 (140)
.....|.||.+.- .++. .|...||..|+...+.. .-.||.|...
T Consensus 10 ~~~~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799998632 2333 79999999999876653 3479999754
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=87.09 E-value=0.2 Score=31.76 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=22.2
Q ss_pred Ccccccccchhhhc----eecCCCCcccHhhHHH
Q psy10659 21 DLLCPICFELIREA----HITRCGHTFCFSCISK 50 (140)
Q Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (140)
...|.+|...|.-- .--.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45899999988632 1237999999999543
No 91
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=86.90 E-value=0.37 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=22.2
Q ss_pred Ccccccccchhhhc----eecCCCCcccHhhHHH
Q psy10659 21 DLLCPICFELIREA----HITRCGHTFCFSCISK 50 (140)
Q Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (140)
...|.+|...|.-- .--.||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 46799999877521 2237999999999654
No 92
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=86.73 E-value=0.34 Score=27.60 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=21.1
Q ss_pred cccccccchhhhc----eecCCCCcccHhhHH
Q psy10659 22 LLCPICFELIREA----HITRCGHTFCFSCIS 49 (140)
Q Consensus 22 ~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 49 (140)
..|.+|...|.-- .--.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4899999987632 123799999999954
No 93
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.51 E-value=0.53 Score=26.85 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
.....|.-|...+...++..-+..|+..| +.|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 34678999999887766667788888887 45888887764
No 94
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=86.02 E-value=0.091 Score=38.57 Aligned_cols=46 Identities=28% Similarity=0.560 Sum_probs=36.1
Q ss_pred CCCcccccccchhhhceec----CCC--CcccHhhHHHHhhcCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT----RCG--HTFCFSCISKCVELQIKCPKCSAS 64 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~----~Cg--H~fC~~Ci~~~~~~~~~CP~C~~~ 64 (140)
...-.||+|.....-.++. .=| +.+|..|-..|.-....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999999977654432 233 688999999998888899999986
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.90 E-value=0.36 Score=28.25 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=22.1
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHH
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCIS 49 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 49 (140)
+...|.+|...|.-- .--.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 346899999988532 123799999999954
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=85.47 E-value=0.31 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.458 Sum_probs=26.6
Q ss_pred CCCCcccccccchhhhc----eecCCCCcccHhhHHHHhhcCCCCCCCC
Q psy10659 18 PDNDLLCPICFELIREA----HITRCGHTFCFSCISKCVELQIKCPKCS 62 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~C~ 62 (140)
..+...|..|...|.-- .--.||.+||..|..........|-.|-
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34456899999987532 2247999999999665444344455553
No 97
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.91 E-value=0.45 Score=26.09 Aligned_cols=45 Identities=22% Similarity=0.595 Sum_probs=31.8
Q ss_pred CCCCCcccccccchhhhceec--CCCCcccHhhHHHHhh----cCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVE----LQIKCPKCSA 63 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~----~~~~CP~C~~ 63 (140)
+...+..|.+|... ..++. .|...||..|+..-+. ..-.||.|..
T Consensus 7 ~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 44567899999973 23333 7999999999986543 2346999864
No 98
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=84.14 E-value=0.52 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.508 Sum_probs=22.9
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHHH
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCISK 50 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (140)
+...|.+|...|.-- .--.||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 456899999987632 1237999999999653
No 99
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.99 E-value=0.14 Score=28.18 Aligned_cols=34 Identities=26% Similarity=0.696 Sum_probs=24.5
Q ss_pred Ccccccccchhhhc-----eecC---CCCcccHhhHHHHhhc
Q psy10659 21 DLLCPICFELIREA-----HITR---CGHTFCFSCISKCVEL 54 (140)
Q Consensus 21 ~~~C~IC~~~~~~p-----~~~~---CgH~fC~~Ci~~~~~~ 54 (140)
.-.||-|...+... ++-. |++.||..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 45789888877643 2323 8999999998887653
No 100
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=83.00 E-value=0.58 Score=31.45 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=33.5
Q ss_pred CCcccccccchhhh---ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE---AHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
+=|.|..|...+.. +....=|..||..|..+.+.....|+.|++.+..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 34788888888875 4555678889999887765332368888776654
No 101
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.97 E-value=0.84 Score=25.38 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=20.4
Q ss_pred CCcccccccchhhh-ceecCCCCcccHh
Q psy10659 20 NDLLCPICFELIRE-AHITRCGHTFCFS 46 (140)
Q Consensus 20 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~ 46 (140)
....|..|...+.- +..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 45799999986543 4445899999985
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.87 E-value=0.4 Score=33.22 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=22.4
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHH
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCIS 49 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~ 49 (140)
++..|.+|...|.-- .--.||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 357999999987622 123799999999954
No 103
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=82.70 E-value=0.58 Score=32.60 Aligned_cols=31 Identities=32% Similarity=0.622 Sum_probs=22.8
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHHH
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCISK 50 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (140)
+...|.+|...|.-- .--.||++||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 346899999877622 2247999999999653
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=82.57 E-value=0.11 Score=30.25 Aligned_cols=33 Identities=30% Similarity=0.652 Sum_probs=23.3
Q ss_pred Cccccc--ccchhhh-----ceec------CCCCcccHhhHHHHhh
Q psy10659 21 DLLCPI--CFELIRE-----AHIT------RCGHTFCFSCISKCVE 53 (140)
Q Consensus 21 ~~~C~I--C~~~~~~-----p~~~------~CgH~fC~~Ci~~~~~ 53 (140)
..-||- |...+.. .+.= .||+.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 667886 7765531 2333 5999999999988764
No 105
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=81.56 E-value=1.1 Score=27.78 Aligned_cols=47 Identities=15% Similarity=0.387 Sum_probs=35.6
Q ss_pred CCcccccccchhhh-ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE-AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
+-+.|..|...+.. +....=|..||..|.... ....|+.|+.++...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 34789999988865 344567889999998754 367899999988753
No 106
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.61 E-value=0.074 Score=31.16 Aligned_cols=11 Identities=27% Similarity=1.135 Sum_probs=6.8
Q ss_pred cccccccchhh
Q psy10659 22 LLCPICFELIR 32 (140)
Q Consensus 22 ~~C~IC~~~~~ 32 (140)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 56777766554
No 107
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=80.08 E-value=1.2 Score=24.91 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=26.2
Q ss_pred CCCCCcccccccchhhhceecCC-CCcccHhhHHHHh
Q psy10659 17 PPDNDLLCPICFELIREAHITRC-GHTFCFSCISKCV 52 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~ 52 (140)
..++..-|-||.+.-. -.-+.| |-.||..|+.+.-
T Consensus 4 ~~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 4 GSSGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SCCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCcCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 4456778999999733 223578 8899999998876
No 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=79.78 E-value=0.36 Score=36.53 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCcccccccchhhhc----eecCCCCcccHhhHHHHh
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFSCISKCV 52 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~ 52 (140)
+...|.+|...|.-- .--.||++||..|-....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 356899999988622 223799999999987554
No 109
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=79.18 E-value=0.2 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=20.2
Q ss_pred ccccccchhhh-----ceec-CCCCcccHhhHHHH
Q psy10659 23 LCPICFELIRE-----AHIT-RCGHTFCFSCISKC 51 (140)
Q Consensus 23 ~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 51 (140)
-||-|...+.. ++.- .||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 49988775532 2333 49999999987766
No 110
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=79.07 E-value=0.92 Score=28.37 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=34.9
Q ss_pred CCcccccccchhhh---ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE---AHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
+=+.|..|...+.. +....=|..||..|..+.+.....|..|+.++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45788899888852 4455678889999988765433478888887764
No 111
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=78.84 E-value=0.31 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.921 Sum_probs=8.0
Q ss_pred Ccccccccchhhhc
Q psy10659 21 DLLCPICFELIREA 34 (140)
Q Consensus 21 ~~~C~IC~~~~~~p 34 (140)
.+.||+|...+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 35666666655544
No 112
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.72 E-value=0.61 Score=25.51 Aligned_cols=44 Identities=16% Similarity=0.582 Sum_probs=30.2
Q ss_pred CCCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCSAS 64 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~~ 64 (140)
..+..|.+|.+. ..++. .|...||..|+..-+.. .-.||.|...
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456789999863 22332 78999999998754432 3469999753
No 113
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.38 E-value=1.1 Score=25.17 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=21.0
Q ss_pred CCcccccccchhhhc----eecCCCCcccHh
Q psy10659 20 NDLLCPICFELIREA----HITRCGHTFCFS 46 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~ 46 (140)
....|..|.....-+ ..-.||.+||..
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhc
Confidence 457899999977655 344899999985
No 114
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.12 E-value=0.85 Score=23.78 Aligned_cols=41 Identities=22% Similarity=0.643 Sum_probs=26.6
Q ss_pred ccccccchhhh-ceec--CCCCcccHhhHHHHhhc----CCCCCCCCC
Q psy10659 23 LCPICFELIRE-AHIT--RCGHTFCFSCISKCVEL----QIKCPKCSA 63 (140)
Q Consensus 23 ~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~ 63 (140)
.|.||...-.. .++. .|...|+..|+..-+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47788764322 2222 78899999999754432 345998864
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.99 E-value=0.62 Score=28.12 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCCcccccccchhhhceec---CCCCcccHhhHHHHhh---cCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT---RCGHTFCFSCISKCVE---LQIKCPKCSA 63 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~CP~C~~ 63 (140)
++...| ||........++ .|..-|+..|+..-.. ....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345778 898766544333 7888999999864322 2367999963
No 116
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=77.34 E-value=2.8 Score=27.46 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=29.0
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
+=+.|..|...+.......=|..||..|....+ ...|..|+..+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc--cccccccccccC
Confidence 457888888877654444567888988877654 344555554443
No 117
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=75.74 E-value=2.7 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=19.7
Q ss_pred CCcccccccchhh-hceecCCCCcccHh
Q psy10659 20 NDLLCPICFELIR-EAHITRCGHTFCFS 46 (140)
Q Consensus 20 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~ 46 (140)
....|..|...+. .+..-.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 3468999988543 34555799999984
No 118
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.42 E-value=3.7 Score=23.20 Aligned_cols=41 Identities=17% Similarity=0.459 Sum_probs=30.8
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
....|+-|...+....+..-|..|+..| +.|..|+.++...
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 3467999998777666667788888777 5688898887754
No 119
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.80 E-value=2.7 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=24.7
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
..|+-|...+...++..-|..|+..| +.|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46777777666655556677777766 45777777665
No 120
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=74.30 E-value=1.3 Score=26.85 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=10.9
Q ss_pred cccHhhHHHHhh
Q psy10659 42 TFCFSCISKCVE 53 (140)
Q Consensus 42 ~fC~~Ci~~~~~ 53 (140)
.||..|+..|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 121
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=74.03 E-value=1.3 Score=26.76 Aligned_cols=12 Identities=33% Similarity=0.932 Sum_probs=10.9
Q ss_pred cccHhhHHHHhh
Q psy10659 42 TFCFSCISKCVE 53 (140)
Q Consensus 42 ~fC~~Ci~~~~~ 53 (140)
.||..|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 122
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=73.23 E-value=2.5 Score=28.09 Aligned_cols=44 Identities=25% Similarity=0.536 Sum_probs=24.7
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
|.|..|...+.......=|..||..|..+. ....|..|+..+..
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCceeECCEeeecCccccc--cccccccCCCccCC
Confidence 455555555443222234556777776543 24678888776654
No 123
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.04 E-value=5.6 Score=25.66 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=30.0
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHhh-----------cCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-----------LQIKCPKCSA 63 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~CP~C~~ 63 (140)
..+..|.+|.+--.--.--.|-.+||..|+..-+. ..-.||.|..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34678888887332111127999999999996542 2346999964
No 124
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=72.98 E-value=2.4 Score=22.94 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=27.6
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|+.|...+...++..-|..|+..| +.|..|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCCC
Confidence 56888888777666666777777777 458888887764
No 125
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=72.57 E-value=3.2 Score=23.71 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=20.7
Q ss_pred CCCcccccccchhhh-ceecCCCCcccHh
Q psy10659 19 DNDLLCPICFELIRE-AHITRCGHTFCFS 46 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~ 46 (140)
.....|..|...+.- +..-.||.+||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 456799999876543 4555899999985
No 126
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.45 E-value=3.3 Score=22.71 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=25.8
Q ss_pred cccccccchhh--hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIR--EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 22 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
..|.-|...+. +.++..-|..|+..| +.|..|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCCC
Confidence 46777877766 345556677777776 4577777776543
No 127
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=72.36 E-value=0.73 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.854 Sum_probs=16.3
Q ss_pred eecCCCCcccHhhHHHHhhcCCCCCCCCCC
Q psy10659 35 HITRCGHTFCFSCISKCVELQIKCPKCSAS 64 (140)
Q Consensus 35 ~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~ 64 (140)
.-..||+.|+ .-+.....||.|+..
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 3457999992 112234789999864
No 128
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=71.87 E-value=0.9 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCSASL 65 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~~~ 65 (140)
..+..|.+|.+.-. +.. .|...||..|+...+.. .-.||.|+...
T Consensus 5 ~~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 35577999986421 222 79999999998765542 35699998643
No 129
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.15 E-value=0.28 Score=29.63 Aligned_cols=40 Identities=35% Similarity=0.832 Sum_probs=26.7
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
..||+|...+.-. =|+.+|..|-.. +.....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 8999999877521 234448877543 223467999998764
No 130
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=71.12 E-value=0.94 Score=30.35 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=30.4
Q ss_pred CCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCSASL 65 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~~~ 65 (140)
.+..|.+|.+--. ... .|...||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4567999986421 222 79999999998665542 35699998753
No 131
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.82 E-value=3.2 Score=24.07 Aligned_cols=41 Identities=17% Similarity=0.532 Sum_probs=31.7
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
....|+.|...+...++..-|..||..| +.|..|++.+...
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCCC
Confidence 4567999999887766667788888887 5688898887653
No 132
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.04 E-value=3.9 Score=23.99 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=22.0
Q ss_pred CCCcccccccchhhh--ceecCCCCcccHhh
Q psy10659 19 DNDLLCPICFELIRE--AHITRCGHTFCFSC 47 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~--p~~~~CgH~fC~~C 47 (140)
.....|..|...+.- +..-.||.+||..-
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECTTT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEecccC
Confidence 345799999986553 66668999999853
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.86 E-value=2.1 Score=23.48 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=26.7
Q ss_pred CcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
...|..|...+...++..-|..|+..| +.|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCCC
Confidence 356788887776555556666777766 4577787776654
No 134
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.40 E-value=3.3 Score=22.62 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=23.5
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|..|...+....+..-|..|+..| +.|..|++++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCCc
Confidence 45777777665554445666666666 446677766643
No 135
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=69.22 E-value=2 Score=28.91 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=13.5
Q ss_pred CCCCCCCChhhhhcCCCCCCCcccccccc
Q psy10659 1 MSATSTPSRSLKRQHSPPDNDLLCPICFE 29 (140)
Q Consensus 1 ms~~~~~~~~~~~~~~~~~~~~~C~IC~~ 29 (140)
|+++++..........++.....||.|..
T Consensus 1 ~~~~~~~~~~~~~~~~~ln~~~~CPECGs 29 (197)
T 3k1f_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKV 29 (197)
T ss_dssp ------------CCSSCCCCCCCCTTTCC
T ss_pred CCCCCCCCCCccccccccccCeECcCCCC
Confidence 55555555544455667777889999997
No 136
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=68.84 E-value=1.3 Score=29.97 Aligned_cols=43 Identities=16% Similarity=0.556 Sum_probs=30.3
Q ss_pred cccccccchhhhce----ec---CCCCcccHhhHHH------Hhh-----cCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAH----IT---RCGHTFCFSCISK------CVE-----LQIKCPKCSAS 64 (140)
Q Consensus 22 ~~C~IC~~~~~~p~----~~---~CgH~fC~~Ci~~------~~~-----~~~~CP~C~~~ 64 (140)
..||||...+.+.- .+ .|..=||..|..- -+. ....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 56999999887542 33 6888899999732 111 26899999864
No 137
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=68.79 E-value=1.6 Score=25.82 Aligned_cols=46 Identities=15% Similarity=0.467 Sum_probs=33.2
Q ss_pred CCcccccccchhhhc-eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREA-HITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
+=+.|..|...+... ....=|..||..|..+. ....|..|+.++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCcccc
Confidence 347888998888643 33467888999886432 35789999988874
No 138
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.90 E-value=3.5 Score=23.27 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=27.5
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|..|...+.+.++..-+..|+..| +.|..|++++..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccCC
Confidence 46888888777666666677777776 458888887754
No 139
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.60 E-value=7.6 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=20.8
Q ss_pred CCCcccccccchh-----hh--ceec--CCCCcccHhhHH
Q psy10659 19 DNDLLCPICFELI-----RE--AHIT--RCGHTFCFSCIS 49 (140)
Q Consensus 19 ~~~~~C~IC~~~~-----~~--p~~~--~CgH~fC~~Ci~ 49 (140)
.....|.+|+..- .+ ..+. .|+..|+..|+.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3456788897642 11 2222 799999999994
No 140
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.57 E-value=3.4 Score=23.50 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=28.7
Q ss_pred CCCcccccccchhh-hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIR-EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
.....|+-|...+. ...+..-+..|+..| +.|..|+.++..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcCC
Confidence 34678999998775 334445677777777 558888887763
No 141
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.36 E-value=3.2 Score=23.48 Aligned_cols=40 Identities=23% Similarity=0.554 Sum_probs=29.2
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
..|+.|...+...++..-|..|+..| +.|-.|++++....
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 37888888777655556777888777 55888988876543
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=67.35 E-value=2.2 Score=27.31 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCCcccccccchhh---hc--eecCCCCcccHhhHH
Q psy10659 19 DNDLLCPICFELIR---EA--HITRCGHTFCFSCIS 49 (140)
Q Consensus 19 ~~~~~C~IC~~~~~---~p--~~~~CgH~fC~~Ci~ 49 (140)
.....|.+|...|. +. +-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45789999999883 11 223688888887743
No 143
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.03 E-value=0.64 Score=27.73 Aligned_cols=47 Identities=17% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCCCcccccccchhhh-ceec--CCCCcccHhhHHHHhhc----CCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIRE-AHIT--RCGHTFCFSCISKCVEL----QIKCPKCSA 63 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~ 63 (140)
...+...|.||...-.. .+++ .|...||..|+..-+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44567789999986532 2333 78888999998643332 235887753
No 144
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.51 E-value=3.7 Score=22.56 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=25.3
Q ss_pred Ccccccccchhhh----ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 21 DLLCPICFELIRE----AHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 21 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
...|.-|...+.. .++..-|..|+..| +.|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCCC
Confidence 3567778776664 44445677777766 457777777654
No 145
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.48 E-value=8.3 Score=24.42 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHh-----------hcCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCV-----------ELQIKCPKCS 62 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~C~ 62 (140)
..+..|.+|.+--.-..--.|-..||..|+..-+ ...-.|+.|.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 3456799988632211112799999999999642 1235799995
No 146
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=66.24 E-value=0.69 Score=25.97 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCCCCCcccccccchhhhceec---CCCCcccHhhHHHHhh---cCCCCCCCCC
Q psy10659 15 HSPPDNDLLCPICFELIREAHIT---RCGHTFCFSCISKCVE---LQIKCPKCSA 63 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~---~~~~CP~C~~ 63 (140)
.....+...| ||.........+ .|..=|+..|+.--.. ....||.|+.
T Consensus 13 ~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 13 NLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp -CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred cCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3445677889 999876654343 5777888888752221 2356777753
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=65.58 E-value=6 Score=21.94 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=30.5
Q ss_pred CCcccccccchhhh-ceecCCCCcccH-hhHHHHhhcCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE-AHITRCGHTFCF-SCISKCVELQIKCPKCSASL 65 (140)
Q Consensus 20 ~~~~C~IC~~~~~~-p~~~~CgH~fC~-~Ci~~~~~~~~~CP~C~~~~ 65 (140)
+=+.|..|...+.. +....=|..||. .|..+.+ ...|..|+..+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 45788888887765 344466788998 5876543 56788887543
No 148
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.48 E-value=2.9 Score=22.78 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=21.1
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
..|+-|...+....+..-|..|+..| +.|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 45666666555444444555566555 34666666654
No 149
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.34 E-value=3.6 Score=22.94 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=24.4
Q ss_pred cccccccchhhh----ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIRE----AHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|+.|...+.. .++..-+..|+..| +.|..|+.++..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCC
Confidence 467778777664 44445666777766 446777776653
No 150
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.30 E-value=3.3 Score=23.11 Aligned_cols=40 Identities=25% Similarity=0.613 Sum_probs=28.0
Q ss_pred Ccccccccchhh-hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 21 DLLCPICFELIR-EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 21 ~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
...|+.|...+. ...+..-|..|+..| +.|..|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 357888888776 444446677777777 4588888877653
No 151
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.10 E-value=5.9 Score=22.26 Aligned_cols=39 Identities=21% Similarity=0.546 Sum_probs=28.3
Q ss_pred cccccccchhh--hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIR--EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 22 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
..|+.|...+. +.++..-|..|+..| +.|-.|++++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccCCC
Confidence 57888888777 444556677888777 5588888877654
No 152
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=63.76 E-value=3 Score=22.79 Aligned_cols=47 Identities=19% Similarity=0.545 Sum_probs=31.5
Q ss_pred CCCCcccccccchhh---hceec--CCCCcccHhhHHHHh-------hcCCCCCCCCCC
Q psy10659 18 PDNDLLCPICFELIR---EAHIT--RCGHTFCFSCISKCV-------ELQIKCPKCSAS 64 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~~~-------~~~~~CP~C~~~ 64 (140)
..++..|.+|..... +.+++ .|...|+..|+..-+ ...-.||.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 346788999998643 33333 799999999987532 133568888643
No 153
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.63 E-value=3.1 Score=23.52 Aligned_cols=39 Identities=21% Similarity=0.484 Sum_probs=26.1
Q ss_pred CcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
...|+-|...+.+.++..-|..|+..| +.|..|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccCC
Confidence 356777777666555556666777666 457788877764
No 154
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=62.20 E-value=6.8 Score=22.31 Aligned_cols=31 Identities=23% Similarity=0.660 Sum_probs=23.7
Q ss_pred CCcccccccchh-hhce--ecCCCCcccHhhHHH
Q psy10659 20 NDLLCPICFELI-REAH--ITRCGHTFCFSCISK 50 (140)
Q Consensus 20 ~~~~C~IC~~~~-~~p~--~~~CgH~fC~~Ci~~ 50 (140)
.+..|.+|.... ..++ -+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 468899998644 3333 358999999999986
No 155
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.66 E-value=6.4 Score=22.00 Aligned_cols=38 Identities=18% Similarity=0.522 Sum_probs=25.8
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|+.|...+....+..-|..|+..| +.|-.|++++..
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCCC
Confidence 46777777666555556677777766 457788877754
No 156
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.57 E-value=4.3 Score=23.96 Aligned_cols=44 Identities=18% Similarity=0.528 Sum_probs=31.4
Q ss_pred CCCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCSAS 64 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~~~ 64 (140)
+.+..|.+|...- .... .|...|+..|+..-+.. .-.||.|...
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4567899999742 2322 78899999999765543 3469999754
No 157
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=61.30 E-value=4.7 Score=33.21 Aligned_cols=70 Identities=17% Similarity=0.357 Sum_probs=44.8
Q ss_pred CCCCCcccccccchhhhce----------ecCCCCc--------------------ccHhhHHHHhhc--------CCCC
Q psy10659 17 PPDNDLLCPICFELIREAH----------ITRCGHT--------------------FCFSCISKCVEL--------QIKC 58 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~----------~~~CgH~--------------------fC~~Ci~~~~~~--------~~~C 58 (140)
...|.-.|+-|+..+.+|- -+.||-. +|..|..+|-.. ...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 3467789999999998872 2357743 599999999752 2469
Q ss_pred CCCCCCCCCCCCCccchHHHHHHHHHHh
Q psy10659 59 PKCSASLPDMNSVFPNFLLNELVQKHKI 86 (140)
Q Consensus 59 P~C~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (140)
|.|+-.+...+.--....+...++.++.
T Consensus 187 ~~CGP~l~l~~~~~~~~~i~~aa~~L~~ 214 (761)
T 3vth_A 187 FDCGPSLSFVGEGCFDDEIKCVAKALKE 214 (761)
T ss_dssp TTTSCCEEEESSCCCSCHHHHHHHHHHT
T ss_pred CccCCeeEEeCCCCchHHHHHHHHHHHc
Confidence 9999776432200022345555555544
No 158
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.96 E-value=8 Score=22.64 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCCCCCcccccccchhh---hceec--CCCCcccHhhHHHHhh--cCCCCCCCCCCCC
Q psy10659 16 SPPDNDLLCPICFELIR---EAHIT--RCGHTFCFSCISKCVE--LQIKCPKCSASLP 66 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~~~~--~~~~CP~C~~~~~ 66 (140)
...+++..|.||...-. +.+++ .|.-.|+..|+..-.. +.-.||.|.....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34567889999997641 22333 7988999999874322 3346888865433
No 159
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.92 E-value=7.6 Score=21.47 Aligned_cols=41 Identities=20% Similarity=0.486 Sum_probs=27.6
Q ss_pred CCcccccccchhh--hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIR--EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
....|+-|...+. +.++..-|..|+..| +.|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCCC
Confidence 3567888888775 344446677777776 4577888776543
No 160
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.39 E-value=5.3 Score=21.80 Aligned_cols=39 Identities=18% Similarity=0.452 Sum_probs=25.1
Q ss_pred cccccccchhhh--ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIRE--AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 22 ~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
..|+.|...+.. .++..-|..|+..| +.|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccCCC
Confidence 467778776663 34445666777766 4577777776543
No 161
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.26 E-value=2.4 Score=25.82 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCcccccccchhhh-cee--cCCCCcccHhhHHHHhh
Q psy10659 19 DNDLLCPICFELIRE-AHI--TRCGHTFCFSCISKCVE 53 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~-p~~--~~CgH~fC~~Ci~~~~~ 53 (140)
.++..|.||.+.-.. ..+ ..|+..||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 357889999876432 222 38999999999976553
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.71 E-value=11 Score=21.73 Aligned_cols=41 Identities=20% Similarity=0.446 Sum_probs=26.8
Q ss_pred CCcccccccchhhh-ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE-AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
....|.-|...+.. ..+..-|..|+..| +.|-.|+.++...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCCCC
Confidence 35678888887754 33456677777776 4477777766553
No 163
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=59.64 E-value=15 Score=19.55 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=27.4
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy10659 105 NLSLPDVNLMLEVLNQRKHLLEAESSVAQYKLL 137 (140)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~ 137 (140)
..+..+++.+|+.+......+.++...++.++-
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999888887763
No 164
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=59.31 E-value=4.2 Score=26.57 Aligned_cols=29 Identities=28% Similarity=0.634 Sum_probs=21.9
Q ss_pred CCcccccccchhhh---c--eecCCCCcccHhhH
Q psy10659 20 NDLLCPICFELIRE---A--HITRCGHTFCFSCI 48 (140)
Q Consensus 20 ~~~~C~IC~~~~~~---p--~~~~CgH~fC~~Ci 48 (140)
++-.|.+|...|.- + +-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 57899999998752 2 22379999999885
No 165
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.11 E-value=12 Score=20.36 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=19.0
Q ss_pred cccccccchhhh--ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIRE--AHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 22 ~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
..|..|...+.. .++..-|..|+..| +.|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccC--------CcccccCCcCC
Confidence 456666654442 23334455555555 33556666553
No 166
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=58.49 E-value=5.4 Score=22.08 Aligned_cols=29 Identities=31% Similarity=0.669 Sum_probs=21.2
Q ss_pred CCCcccccccchhhh-ceecCCCCcccHhh
Q psy10659 19 DNDLLCPICFELIRE-AHITRCGHTFCFSC 47 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~C 47 (140)
.....|..|...+.- +..-.||.+||..-
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred CcCCcChhhCCccCccCEEeecCCEecccc
Confidence 345899999986543 45558999999853
No 167
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.49 E-value=13 Score=20.95 Aligned_cols=42 Identities=31% Similarity=0.574 Sum_probs=28.6
Q ss_pred CCcccccccchhhh-ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIRE-AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 20 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
....|..|...+.. ..+..-|..|+..| +.|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 45789999997743 33445677777777 45778887776543
No 168
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.63 E-value=5.6 Score=22.25 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=26.2
Q ss_pred cccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
..|+.|...+....+..-|..|+..| +.|..|+.++...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCCCC
Confidence 46777877766555555666676666 4578888877653
No 169
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.49 E-value=8.9 Score=21.77 Aligned_cols=46 Identities=22% Similarity=0.438 Sum_probs=30.2
Q ss_pred CCCcccccccchhh-hceec---CCCCcccHhhHHHHh-----hcCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIR-EAHIT---RCGHTFCFSCISKCV-----ELQIKCPKCSASL 65 (140)
Q Consensus 19 ~~~~~C~IC~~~~~-~p~~~---~CgH~fC~~Ci~~~~-----~~~~~CP~C~~~~ 65 (140)
.+...| ||...+. ....+ .|..=||..|+.--. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456778 8988773 22222 688888999984211 1357899998654
No 170
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=56.49 E-value=8.1 Score=25.42 Aligned_cols=42 Identities=24% Similarity=0.594 Sum_probs=28.5
Q ss_pred CCcccccccchhhhcee----cCCCCcccHhhHHHHhhc----------CCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHI----TRCGHTFCFSCISKCVEL----------QIKCPKCSA 63 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~----------~~~CP~C~~ 63 (140)
.+..|.||-+-- .++ ..|...||..||...+-. .-.|=+|.-
T Consensus 78 ~~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 457888888632 122 158899999999988742 235878864
No 171
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=56.23 E-value=1.5 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=16.4
Q ss_pred cCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 37 TRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 37 ~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
+.||++|-.+=+.. -....||.|+-.+-.
T Consensus 7 ~rCg~~fs~~el~~--lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 7 GKCWKTFTDEQLKV--LPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCTTTTCCCCCSCC--CSSSCCTTTCCSCEE
T ss_pred eccCCCccHHHHhh--CCCcccCccCcEEEE
Confidence 45676665532211 134679999876543
No 172
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=55.98 E-value=7.8 Score=29.25 Aligned_cols=44 Identities=23% Similarity=0.538 Sum_probs=29.1
Q ss_pred CCcccccccchhhhcee--cCCCCcccHhhHHHHhhc----------CCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHI--TRCGHTFCFSCISKCVEL----------QIKCPKCSA 63 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~----------~~~CP~C~~ 63 (140)
.+..|.+|-+--.--.- -.|...||..||...+-. .-.|=+|.-
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45678888763321111 279999999999988721 246888864
No 173
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=54.85 E-value=5.5 Score=24.41 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=19.6
Q ss_pred CcccccccchhhhceecCCCCcccH
Q psy10659 21 DLLCPICFELIREAHITRCGHTFCF 45 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~ 45 (140)
...|..|...-..-+-+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4679999876555567899999995
No 174
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=54.77 E-value=10 Score=21.19 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=30.2
Q ss_pred CCCCCCcccccccchh---hhceec--CCCCcccHhhHHHHhh--cCCCCCCCC
Q psy10659 16 SPPDNDLLCPICFELI---REAHIT--RCGHTFCFSCISKCVE--LQIKCPKCS 62 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~---~~p~~~--~CgH~fC~~Ci~~~~~--~~~~CP~C~ 62 (140)
....++..|.||...- .+.+++ .|.-.|+..|+..-.. +.-.||.|.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 3455678999998753 223333 7999999999864221 233576664
No 175
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=54.52 E-value=7.5 Score=32.04 Aligned_cols=51 Identities=25% Similarity=0.557 Sum_probs=37.6
Q ss_pred CCCCCcccccccchhhhce----------ecCCCCc--------------------ccHhhHHHHhhc--------CCCC
Q psy10659 17 PPDNDLLCPICFELIREAH----------ITRCGHT--------------------FCFSCISKCVEL--------QIKC 58 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~----------~~~CgH~--------------------fC~~Ci~~~~~~--------~~~C 58 (140)
...|.-.|+-|+..+.+|- -+.||-. +|..|-.+|-.. ...|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 3467789999999998872 1356654 499999999852 2469
Q ss_pred CCCCCCCCC
Q psy10659 59 PKCSASLPD 67 (140)
Q Consensus 59 P~C~~~~~~ 67 (140)
|.|+-.+..
T Consensus 182 ~~CGP~l~l 190 (772)
T 4g9i_A 182 PVCGPSYRL 190 (772)
T ss_dssp TTTSCCEEE
T ss_pred ccCCceEEE
Confidence 999987643
No 176
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=53.81 E-value=3.4 Score=27.82 Aligned_cols=44 Identities=16% Similarity=0.455 Sum_probs=28.1
Q ss_pred CcccccccchhhhceecCCCCcccHhhHHHHhh----cCCCCCCCCCC
Q psy10659 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVE----LQIKCPKCSAS 64 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----~~~~CP~C~~~ 64 (140)
+..|.+|.+--.--.--.|...||..|+..-+. +.-.||.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 356888886422111126888999999865443 23469999764
No 177
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.95 E-value=9.3 Score=21.44 Aligned_cols=38 Identities=29% Similarity=0.609 Sum_probs=25.4
Q ss_pred cccccccchhh--hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIR--EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|..|...+. ..++..-|..|+..| +.|..|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCC
Confidence 46888888776 334445577777766 457788877764
No 178
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=52.24 E-value=9.8 Score=30.78 Aligned_cols=49 Identities=24% Similarity=0.670 Sum_probs=36.8
Q ss_pred CCCCCcccccccchhhhce----------ecCCCCc--------------------ccHhhHHHHhhc--------CCCC
Q psy10659 17 PPDNDLLCPICFELIREAH----------ITRCGHT--------------------FCFSCISKCVEL--------QIKC 58 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~----------~~~CgH~--------------------fC~~Ci~~~~~~--------~~~C 58 (140)
...|.-.|+-|+..+.+|- -+.||-. +|..|..+|-.. ...|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 4567789999999998872 1356654 599999999852 2469
Q ss_pred CCCCCCC
Q psy10659 59 PKCSASL 65 (140)
Q Consensus 59 P~C~~~~ 65 (140)
|.|+-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9999776
No 179
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=51.79 E-value=6.7 Score=21.73 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=27.5
Q ss_pred cccccccchhhh-----ceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIRE-----AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
..|+-|...+.. .++..=|..|+..| +.|..|++++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCCC
Confidence 578888887774 44445677777777 5588888887644
No 180
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=51.75 E-value=6.7 Score=21.07 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=25.5
Q ss_pred ccccccchhh--hceecCCCCccc--HhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 23 LCPICFELIR--EAHITRCGHTFC--FSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 23 ~C~IC~~~~~--~p~~~~CgH~fC--~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
.|+-|...+. +.++..-|..|+ ..| +.|-.|+.++...
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCCCC
Confidence 5777877766 345556677777 776 4577787777543
No 181
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.27 E-value=5.9 Score=21.43 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=30.3
Q ss_pred CCCcccccccchhhh-ceec---CCCCcccHhhHHHHhh-----cCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIRE-AHIT---RCGHTFCFSCISKCVE-----LQIKCPKCSA 63 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~-p~~~---~CgH~fC~~Ci~~~~~-----~~~~CP~C~~ 63 (140)
++...|++|...+.+ ...+ .|..=||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 467889999988742 2233 6788888888753221 3467998865
No 182
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=50.76 E-value=6.7 Score=32.27 Aligned_cols=34 Identities=29% Similarity=0.748 Sum_probs=25.7
Q ss_pred Ccccccccchhhhc----------eecCCCCcccHhhHHHHhhc
Q psy10659 21 DLLCPICFELIREA----------HITRCGHTFCFSCISKCVEL 54 (140)
Q Consensus 21 ~~~C~IC~~~~~~p----------~~~~CgH~fC~~Ci~~~~~~ 54 (140)
...||+|.--..+. ..++||-.||..|+..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 45789998766543 24689999999999977653
No 183
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.18 E-value=12 Score=23.10 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=28.3
Q ss_pred Ccccccccchhhhce-ecCCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 21 DLLCPICFELIREAH-ITRCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
...|.-|...+.... +..-|..|+..|+. |-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~--------C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLK--------CSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSB--------CTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccC--------cCcCCCccc
Confidence 568999999877663 45677778888865 677888775
No 184
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=49.13 E-value=9.8 Score=23.37 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=18.9
Q ss_pred Ccccccccchhh--hceecCCCCcccHhhHHHHh
Q psy10659 21 DLLCPICFELIR--EAHITRCGHTFCFSCISKCV 52 (140)
Q Consensus 21 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~ 52 (140)
=|.|..|...+. +.....=|..||..|....+
T Consensus 36 CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 356667766662 23344556677777766554
No 185
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.70 E-value=14 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCcccccccchhhh---ceecCCCCcccHhhHHHHhh
Q psy10659 20 NDLLCPICFELIRE---AHITRCGHTFCFSCISKCVE 53 (140)
Q Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~ 53 (140)
+=|.|..|...+.+ .....=|..||..|..+.+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC
Confidence 34778888887763 34445677888888776653
No 186
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=47.28 E-value=8.2 Score=20.31 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.4
Q ss_pred CCCCCcccccccc
Q psy10659 17 PPDNDLLCPICFE 29 (140)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (140)
++.++..||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 5677889999975
No 187
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.27 E-value=15 Score=19.85 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHhh-----cCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-----LQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~C~~~~~~ 67 (140)
+..+.|++|...|..... +..... ....|+.|.+.+..
T Consensus 16 ~~~~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSD-----------LSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHHH-----------HHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHHH-----------HHHHHHHcCCCcCeeCCCCCCccCC
Confidence 456899999888765422 112221 23569999886654
No 188
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.40 E-value=5 Score=24.33 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q psy10659 55 QIKCPKCSASLP 66 (140)
Q Consensus 55 ~~~CP~C~~~~~ 66 (140)
...||+|+.++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 456999998765
No 189
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=46.07 E-value=6.2 Score=20.26 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=9.9
Q ss_pred CCCCCcccccccc
Q psy10659 17 PPDNDLLCPICFE 29 (140)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (140)
++.++..||+|..
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4567789999875
No 190
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=45.63 E-value=35 Score=19.38 Aligned_cols=16 Identities=13% Similarity=0.575 Sum_probs=12.1
Q ss_pred CCCCcccccccchhhh
Q psy10659 18 PDNDLLCPICFELIRE 33 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~ 33 (140)
....+.|++|...|..
T Consensus 14 ~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCBCSSSCCBCSS
T ss_pred CCcCeECCCCCCccCC
Confidence 3456899999988754
No 191
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.24 E-value=2.1 Score=25.19 Aligned_cols=47 Identities=19% Similarity=0.557 Sum_probs=31.8
Q ss_pred CCCcccccccchhh---hceec--CCCCcccHhhHHHHhh--------cCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIR---EAHIT--RCGHTFCFSCISKCVE--------LQIKCPKCSASL 65 (140)
Q Consensus 19 ~~~~~C~IC~~~~~---~p~~~--~CgH~fC~~Ci~~~~~--------~~~~CP~C~~~~ 65 (140)
+.+..|.+|...-. +.+++ .|...||..|+..-+. +.-.|+.|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35678999998643 34444 7999999999875432 234688886543
No 192
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=44.92 E-value=29 Score=17.20 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhh------cCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVE------LQIKCPKCSASLPD 67 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~------~~~~CP~C~~~~~~ 67 (140)
..+.|++|...|.... -+...+. ....|+.|.+.+..
T Consensus 11 k~~~C~~C~k~f~~~~-----------~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSRPD-----------HLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESSHH-----------HHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCCHH-----------HHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 4588999888776532 2222221 23679999987754
No 193
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=44.86 E-value=23 Score=20.55 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=25.5
Q ss_pred CCCCCCCcccccccch-hhhce---ecCCCCcccHhhHHHH
Q psy10659 15 HSPPDNDLLCPICFEL-IREAH---ITRCGHTFCFSCISKC 51 (140)
Q Consensus 15 ~~~~~~~~~C~IC~~~-~~~p~---~~~CgH~fC~~Ci~~~ 51 (140)
++.....+.|.||... ....+ .-.|.-.|+..|....
T Consensus 11 Ip~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 11 IPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 4445668999999764 22222 2369999999998764
No 194
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.82 E-value=15 Score=20.59 Aligned_cols=44 Identities=27% Similarity=0.603 Sum_probs=29.9
Q ss_pred CCcccccccchhhhceec---CCCCcccHhhHHHH---------hhcCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHIT---RCGHTFCFSCISKC---------VELQIKCPKCSAS 64 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~---------~~~~~~CP~C~~~ 64 (140)
+...| ||.........+ .|..=||..|+.-- ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 45788 899877643333 68888999998411 1246789999653
No 195
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.66 E-value=6.2 Score=18.03 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=5.2
Q ss_pred cccccccchhh
Q psy10659 22 LLCPICFELIR 32 (140)
Q Consensus 22 ~~C~IC~~~~~ 32 (140)
+.||+|...+-
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 44555554443
No 196
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.58 E-value=63 Score=21.43 Aligned_cols=62 Identities=3% Similarity=0.050 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCC-------ChHHHHHHhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy10659 75 FLLNELVQKHKIKSAQ-------DSDGLRDFVASESQNLSLPDVNLMLEVLNQRKHLLEAESSVAQYKLLY 138 (140)
Q Consensus 75 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~i~~ 138 (140)
..+..+.+.+...... ...++...+ ...+.|...+..+...+.+.+.++..+.-+.+.++..
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~--~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALL--TASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554332 223333333 3356788889999999999999999888888877754
No 197
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.54 E-value=4.4 Score=21.56 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
..+.|++|...|.....+.= .....|+.|+..+....
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~-------------~~~~~C~~C~~~f~~~~ 53 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR-------------RKTPMCEKCRKDSCQEA 53 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC-------------SSSCCCHHHHHTCSCCC
T ss_pred CCeeCCcccchhCCHHHhCc-------------CCCCCCCCCChhhcCHH
Confidence 45889999988876544321 34466777777665544
No 198
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.32 E-value=21 Score=15.57 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhHh
Q psy10659 118 LNQRKHLLEAESSVAQYKL 136 (140)
Q Consensus 118 ~~~~~~~~e~~~~~~~~~i 136 (140)
+..+..++.|+.+.++++|
T Consensus 5 lkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4556677888888888776
No 199
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=44.29 E-value=15 Score=16.79 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=16.9
Q ss_pred cccccccchhhhc-eecCCCCcccHhh
Q psy10659 22 LLCPICFELIREA-HITRCGHTFCFSC 47 (140)
Q Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~C 47 (140)
..|+.|....... ....=|..|+..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 3688888855433 2345677788777
No 200
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.58 E-value=17 Score=19.34 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCCCCcccccccchhhhceecCCCCcccHhhHHHHhh-----cCCCCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-----LQIKCPKCSASLPD 67 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~C~~~~~~ 67 (140)
.....+.|++|...|..... +..... ....|+.|++.+..
T Consensus 13 ~~~~~~~C~~C~k~f~~~~~-----------l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYKGN-----------LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCCSBCCTTSSCCBSCHHH-----------HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCCeECCCCCceeCCHHH-----------HHHHHHHcCCCCCEECCCCCchhCC
Confidence 33456899999888765422 111211 23579999987654
No 201
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=42.60 E-value=20 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=11.2
Q ss_pred CCCcccHhhHHHHhhcCCCCCCCCCC
Q psy10659 39 CGHTFCFSCISKCVELQIKCPKCSAS 64 (140)
Q Consensus 39 CgH~fC~~Ci~~~~~~~~~CP~C~~~ 64 (140)
=|..||..|....+ ...|..|+..
T Consensus 161 ~g~~yC~~cy~~~f--~~kc~~C~~~ 184 (192)
T 1b8t_A 161 DGEIYCKGCYAKNF--GPKGFGFGQG 184 (192)
T ss_dssp TTEEEEHHHHHHHT--CCCCCCCCCC
T ss_pred CCEEeCHHHHHHhc--CCcCCCCCCc
Confidence 34445555554432 3445555543
No 202
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.28 E-value=10 Score=19.96 Aligned_cols=43 Identities=16% Similarity=0.652 Sum_probs=27.8
Q ss_pred CCCCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCC
Q psy10659 18 PDNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCS 62 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~ 62 (140)
...+..|.+|... ..++. .|...||..|+..-+.. .-.||.|.
T Consensus 6 ~~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3456789999974 23333 78889999998754432 23466663
No 203
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=41.82 E-value=6.5 Score=21.95 Aligned_cols=41 Identities=20% Similarity=0.578 Sum_probs=25.4
Q ss_pred ccccccchhhh-ceec--CCCCcccHhhHHHHhh----c-CCCCCCCCC
Q psy10659 23 LCPICFELIRE-AHIT--RCGHTFCFSCISKCVE----L-QIKCPKCSA 63 (140)
Q Consensus 23 ~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~----~-~~~CP~C~~ 63 (140)
.|.+|...-.. .+++ .|...||..|+..-+. + .-.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45577753222 2333 7999999999875443 2 346888864
No 204
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=41.46 E-value=5.5 Score=25.97 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=13.4
Q ss_pred CCCCcccHhhHHHHhhcCCCCCCCCCCCC
Q psy10659 38 RCGHTFCFSCISKCVELQIKCPKCSASLP 66 (140)
Q Consensus 38 ~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~ 66 (140)
.|||.|=.. .....||.|+.++.
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBEE
T ss_pred CCCCcccCC------CCCCcCCCCCCcce
Confidence 466665322 12347999987653
No 205
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=41.33 E-value=12 Score=19.90 Aligned_cols=41 Identities=17% Similarity=0.680 Sum_probs=25.9
Q ss_pred CCcccccccchhhhceec--CCCCcccHhhHHHHhhc----CCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHIT--RCGHTFCFSCISKCVEL----QIKCPKCS 62 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~----~~~CP~C~ 62 (140)
.+..|.+|... ..++. .|...|+..|+..-+.. .-.||.|.
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~ 50 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence 45779999874 22332 78889999998753332 23466664
No 206
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.94 E-value=18 Score=14.51 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPDMN 69 (140)
Q Consensus 56 ~~CP~C~~~~~~~~ 69 (140)
..|+.|++.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 46999988776543
No 207
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=40.61 E-value=11 Score=21.81 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=10.7
Q ss_pred CCCCCcccccccc
Q psy10659 17 PPDNDLLCPICFE 29 (140)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (140)
++.++..||+|..
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5677889999986
No 208
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=40.57 E-value=8.4 Score=20.48 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.0
Q ss_pred CCCCCcccccccch
Q psy10659 17 PPDNDLLCPICFEL 30 (140)
Q Consensus 17 ~~~~~~~C~IC~~~ 30 (140)
++.++..||+|...
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 56788899999763
No 209
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=39.66 E-value=14 Score=19.87 Aligned_cols=41 Identities=20% Similarity=0.476 Sum_probs=27.4
Q ss_pred CCcccccccchhhhc--eecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREA--HITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~ 68 (140)
....|.-|...+... ++..-|..|+..| +.|-.|+.++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCC--------CcccCCCCCCCCC
Confidence 345788898877633 4446677777777 3577888776543
No 210
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=39.34 E-value=12 Score=22.10 Aligned_cols=45 Identities=16% Similarity=0.459 Sum_probs=26.4
Q ss_pred CCCCCcccccccchhhhceec--CCC---CcccHhhHHHHh--hcCCCCCC-CC
Q psy10659 17 PPDNDLLCPICFELIREAHIT--RCG---HTFCFSCISKCV--ELQIKCPK-CS 62 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~--~Cg---H~fC~~Ci~~~~--~~~~~CP~-C~ 62 (140)
+.++...| ||.......++. .|. .-||..|+.--. .....||. |.
T Consensus 22 ~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCK 74 (90)
T ss_dssp --CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHH
T ss_pred CCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhc
Confidence 44567889 999855444333 443 578999985111 12456888 75
No 211
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.92 E-value=14 Score=22.50 Aligned_cols=28 Identities=18% Similarity=0.520 Sum_probs=17.8
Q ss_pred ccccccchhh-h-------cee--cCCCCcccHhhHHH
Q psy10659 23 LCPICFELIR-E-------AHI--TRCGHTFCFSCISK 50 (140)
Q Consensus 23 ~C~IC~~~~~-~-------p~~--~~CgH~fC~~Ci~~ 50 (140)
.|.+|+..-. + ..+ ..|+..||..|+..
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 5778876441 1 222 27889999999853
No 212
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=38.73 E-value=13 Score=20.29 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=29.5
Q ss_pred CCCcccccccchhhhceec--CCCCcccHhhHHHHhh----cCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHIT--RCGHTFCFSCISKCVE----LQIKCPKCSAS 64 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~----~~~~CP~C~~~ 64 (140)
..+..|.||.+. ..++. .|...||..|+..-+. +.-.||.|...
T Consensus 6 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 457889999874 22332 7888999999875443 23458888653
No 213
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.63 E-value=13 Score=22.86 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=14.3
Q ss_pred CCCCcccHhhHHHHhhcCC-CCCCCCCC
Q psy10659 38 RCGHTFCFSCISKCVELQI-KCPKCSAS 64 (140)
Q Consensus 38 ~CgH~fC~~Ci~~~~~~~~-~CP~C~~~ 64 (140)
.|||.|=.. .... .||.|+.+
T Consensus 78 ~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 78 DCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSSCEECSC------CSTTCCCSSSSSC
T ss_pred CCCCEEeCC------CCCCCcCccccCC
Confidence 577776552 2356 89999876
No 214
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=38.56 E-value=8.1 Score=28.55 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=17.8
Q ss_pred CCCCCCCChhhhhcCCCCCCCcccccccc----hhhhc-----eecCCCCcccHhhH---HHHh
Q psy10659 1 MSATSTPSRSLKRQHSPPDNDLLCPICFE----LIREA-----HITRCGHTFCFSCI---SKCV 52 (140)
Q Consensus 1 ms~~~~~~~~~~~~~~~~~~~~~C~IC~~----~~~~p-----~~~~CgH~fC~~Ci---~~~~ 52 (140)
|++.++...+-.....++.....||-|.. +..+. +-..||-+.-..-| .+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR 64 (345)
T 4bbr_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWR 64 (345)
T ss_dssp ---------------------CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHT
T ss_pred CCCcccCCCCccccCcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCcccc
Confidence 44444444434444556667789999985 22221 33466666555444 4554
No 215
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.56 E-value=11 Score=20.24 Aligned_cols=44 Identities=27% Similarity=0.767 Sum_probs=26.6
Q ss_pred CCCCCcccccccchhhhceec--C--CC-CcccHhhHHHHhh----cCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT--R--CG-HTFCFSCISKCVE----LQIKCPKCSA 63 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~----~~~~CP~C~~ 63 (140)
+..+...| ||.......++. . |. .-||..|+. +. +...||.|..
T Consensus 6 d~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567888 899865443332 4 55 579999987 32 3356887753
No 216
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.49 E-value=25 Score=20.08 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHhh-----cCCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVE-----LQIKCPKCSASLPDM 68 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~C~~~~~~~ 68 (140)
.....|++|...|... .-+..... ....|+.|.+.+...
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 4457899998888754 22222222 235699999877653
No 217
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=38.09 E-value=7.7 Score=18.45 Aligned_cols=17 Identities=29% Similarity=0.684 Sum_probs=12.9
Q ss_pred ecCCCCcccHhhHHHHh
Q psy10659 36 ITRCGHTFCFSCISKCV 52 (140)
Q Consensus 36 ~~~CgH~fC~~Ci~~~~ 52 (140)
..+|.|+.|..|--...
T Consensus 9 mascehtmcgycqgply 25 (40)
T 1erd_A 9 MASCEHTMCGYCQGPLY 25 (40)
T ss_dssp HHHTCGGGGGGSCHHHH
T ss_pred HHhccccccccccCCee
Confidence 34799999999865543
No 218
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=38.07 E-value=17 Score=20.22 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=12.3
Q ss_pred CCCCCcccccccchhh
Q psy10659 17 PPDNDLLCPICFELIR 32 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~ 32 (140)
.+-+.+.||+|...+.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 4557899999998654
No 219
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=37.97 E-value=9.8 Score=19.99 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.5
Q ss_pred CCCCCcccccccc
Q psy10659 17 PPDNDLLCPICFE 29 (140)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (140)
++.++..||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5678889999976
No 220
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=37.45 E-value=5.8 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.710 Sum_probs=18.4
Q ss_pred CCCCcccHhhHHHHhhc----C-CCCCCCCC
Q psy10659 38 RCGHTFCFSCISKCVEL----Q-IKCPKCSA 63 (140)
Q Consensus 38 ~CgH~fC~~Ci~~~~~~----~-~~CP~C~~ 63 (140)
.|...|+..|+..-+.. . -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 78999999998765432 2 46888864
No 221
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.33 E-value=6.2 Score=22.55 Aligned_cols=41 Identities=17% Similarity=0.549 Sum_probs=26.2
Q ss_pred ccccccchhhh-ceec--CCCCcccHhhHHHHhh----c-CCCCCCCCC
Q psy10659 23 LCPICFELIRE-AHIT--RCGHTFCFSCISKCVE----L-QIKCPKCSA 63 (140)
Q Consensus 23 ~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~----~-~~~CP~C~~ 63 (140)
.|.||...-.. .+++ .|...||..|+..-+. + .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67788764222 2333 7999999999875443 2 346888853
No 222
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=37.21 E-value=10 Score=20.22 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.3
Q ss_pred CCCCCcccccccc
Q psy10659 17 PPDNDLLCPICFE 29 (140)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (140)
++.++..||+|..
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4667889999976
No 223
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.43 E-value=7.5 Score=15.72 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPDMN 69 (140)
Q Consensus 56 ~~CP~C~~~~~~~~ 69 (140)
..|+.|++.+....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 3 YVCERCGKRFVQSS 16 (26)
Confidence 35778877766544
No 224
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=36.17 E-value=17 Score=19.93 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=19.9
Q ss_pred CCCcccccccchhhhc-eec----CCCCcccHhhH
Q psy10659 19 DNDLLCPICFELIREA-HIT----RCGHTFCFSCI 48 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p-~~~----~CgH~fC~~Ci 48 (140)
+....|++|...+.+- ..+ .|..-||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3457899999987543 222 67778899997
No 225
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.07 E-value=32 Score=18.77 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCccccc--ccchhhhceecC-CCCcccHhhHHHHhhcCCCCCC
Q psy10659 20 NDLLCPI--CFELIREAHITR-CGHTFCFSCISKCVELQIKCPK 60 (140)
Q Consensus 20 ~~~~C~I--C~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~ 60 (140)
....|+. |...-..|+.-. |+..||.. ..+...-.|+.
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~---HR~~e~H~C~~ 51 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK---HRHPLDHDCSG 51 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH---HHSTTSSCCCS
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc---cCCccCCcCCC
Confidence 4578988 997644465554 99999874 23334456764
No 226
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=36.05 E-value=8.4 Score=21.61 Aligned_cols=38 Identities=21% Similarity=0.470 Sum_probs=18.2
Q ss_pred cccccccchhh-hceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCC
Q psy10659 22 LLCPICFELIR-EAHITRCGHTFCFSCISKCVELQIKCPKCSASLPD 67 (140)
Q Consensus 22 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~ 67 (140)
..|+.|...+. ...+..-|..|+..| +.|-.|++++..
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSS--------EECSSSCCEECS
T ss_pred CcCcCcCccccCceeEEeCCccccccc--------CccCCCCCCCCC
Confidence 45666666553 223334455555544 235555555443
No 227
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=35.94 E-value=11 Score=21.17 Aligned_cols=14 Identities=21% Similarity=0.702 Sum_probs=11.1
Q ss_pred CCCCCcccccccch
Q psy10659 17 PPDNDLLCPICFEL 30 (140)
Q Consensus 17 ~~~~~~~C~IC~~~ 30 (140)
++.++..||+|...
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 46788899999873
No 228
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.88 E-value=35 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=11.1
Q ss_pred cCCCCCCCCCCCCCCC
Q psy10659 54 LQIKCPKCSASLPDMN 69 (140)
Q Consensus 54 ~~~~CP~C~~~~~~~~ 69 (140)
....||.|+..+-.+.
T Consensus 37 ~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 37 EVIRCRECGHRVMYKM 52 (63)
T ss_dssp SCCCCSSSCCCCCBCC
T ss_pred CceECCCCCcEEEEEe
Confidence 4577999987765543
No 229
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=35.71 E-value=2 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.453 Sum_probs=22.6
Q ss_pred CCcccccccchhhhceecCCCCcccHhhHHHHhhcCCCCCCCCCCCCCCC
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMN 69 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~C~~~~~~~~ 69 (140)
..+.|++|...|.....+. ..+. -.....|+.|++.+....
T Consensus 13 k~~~C~~C~k~F~~~~~l~---~~H~------~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ---LFDP------MTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH---HEET------TTTEEBCSSSCCBCEECT
T ss_pred CCccCCCCCchhccHHHhH---hhcC------CCCCEECCCCCCccccCc
Confidence 3477888777665432221 0000 012357999999876654
No 230
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.25 E-value=13 Score=19.85 Aligned_cols=44 Identities=23% Similarity=0.668 Sum_probs=27.1
Q ss_pred CCCCCcccccccchhhhceec--C--CC-CcccHhhHHHHhh----cCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT--R--CG-HTFCFSCISKCVE----LQIKCPKCSA 63 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~~----~~~~CP~C~~ 63 (140)
+..+...| ||.......++. . |. .-||..|+. +. +...||.|..
T Consensus 5 d~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567888 999865443332 4 65 589999987 32 2356887753
No 231
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.18 E-value=24 Score=20.60 Aligned_cols=29 Identities=24% Similarity=0.622 Sum_probs=21.5
Q ss_pred CCCCccccc--ccchhhhceecC-CCCcccHh
Q psy10659 18 PDNDLLCPI--CFELIREAHITR-CGHTFCFS 46 (140)
Q Consensus 18 ~~~~~~C~I--C~~~~~~p~~~~-CgH~fC~~ 46 (140)
......|+. |...-..|+.-. ||..||..
T Consensus 22 ~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CSCCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 345678998 998755666654 99999985
No 232
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=35.07 E-value=22 Score=14.35 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPDM 68 (140)
Q Consensus 56 ~~CP~C~~~~~~~ 68 (140)
..|+.|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 4689998876653
No 233
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=34.78 E-value=8.5 Score=22.36 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.6
Q ss_pred CCCCCCCCCCC
Q psy10659 56 IKCPKCSASLP 66 (140)
Q Consensus 56 ~~CP~C~~~~~ 66 (140)
..||+|+.++.
T Consensus 9 ~~~PlCG~~L~ 19 (95)
T 2k5c_A 9 AKCPICGSPLK 19 (95)
T ss_dssp EECSSSCCEEC
T ss_pred ccCCcCCCccC
Confidence 46999998764
No 234
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.64 E-value=15 Score=24.24 Aligned_cols=9 Identities=44% Similarity=1.010 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q psy10659 56 IKCPKCSAS 64 (140)
Q Consensus 56 ~~CP~C~~~ 64 (140)
..||.|+.+
T Consensus 154 ~~CP~Cg~~ 162 (170)
T 3pwf_A 154 EYCPVCGAP 162 (170)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 379999864
No 235
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=34.09 E-value=2.4 Score=18.32 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=7.3
Q ss_pred cccHhhHHHHhh
Q psy10659 42 TFCFSCISKCVE 53 (140)
Q Consensus 42 ~fC~~Ci~~~~~ 53 (140)
-||..|-..|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 367777666653
No 236
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.83 E-value=19 Score=14.34 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPD 67 (140)
Q Consensus 56 ~~CP~C~~~~~~ 67 (140)
..|+.|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 358888876654
No 237
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.60 E-value=7.4 Score=27.12 Aligned_cols=41 Identities=20% Similarity=0.584 Sum_probs=24.2
Q ss_pred ccccccchhhh-ceec--CCCCcccHhhHHHHhhc-----CCCCCCCCC
Q psy10659 23 LCPICFELIRE-AHIT--RCGHTFCFSCISKCVEL-----QIKCPKCSA 63 (140)
Q Consensus 23 ~C~IC~~~~~~-p~~~--~CgH~fC~~Ci~~~~~~-----~~~CP~C~~ 63 (140)
.|.+|...-.. ...+ .|...||..|+..-+.. .-.||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888763222 2222 79999999999855532 235999964
No 238
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=32.41 E-value=19 Score=14.54 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPD 67 (140)
Q Consensus 56 ~~CP~C~~~~~~ 67 (140)
..|+.|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 468888877654
No 239
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.27 E-value=24 Score=19.73 Aligned_cols=16 Identities=25% Similarity=0.575 Sum_probs=12.5
Q ss_pred CCCCCcccccccchhh
Q psy10659 17 PPDNDLLCPICFELIR 32 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~ 32 (140)
.+-+.+.||+|...+.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 4557899999998665
No 240
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.05 E-value=30 Score=19.43 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=30.5
Q ss_pred CCCCCcccccccchhhhceec-----CCCCcccHhhHHHHhh---------cCCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT-----RCGHTFCFSCISKCVE---------LQIKCPKCSAS 64 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~---------~~~~CP~C~~~ 64 (140)
+..+...| ||........++ .|..=||..|+.--.. ....||.|+..
T Consensus 12 ~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 12 QPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp SCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44567899 899974433333 5777899999852211 25679988653
No 241
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=31.98 E-value=22 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=18.1
Q ss_pred Ccccccccchhhh-ceecC--CCCcccHh
Q psy10659 21 DLLCPICFELIRE-AHITR--CGHTFCFS 46 (140)
Q Consensus 21 ~~~C~IC~~~~~~-p~~~~--CgH~fC~~ 46 (140)
...|..|...-.+ -+-+. |||++|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4689999854333 24567 99999954
No 242
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=31.64 E-value=34 Score=17.52 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=23.2
Q ss_pred ccccccchhhhc-eec----CCCCcccHhhHHHH----hhcCCCCCCCC
Q psy10659 23 LCPICFELIREA-HIT----RCGHTFCFSCISKC----VELQIKCPKCS 62 (140)
Q Consensus 23 ~C~IC~~~~~~p-~~~----~CgH~fC~~Ci~~~----~~~~~~CP~C~ 62 (140)
.|.+|...+.+- ..+ .|..=||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 467888776432 222 36667788886421 12567788874
No 243
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.03 E-value=17 Score=19.64 Aligned_cols=46 Identities=30% Similarity=0.689 Sum_probs=27.1
Q ss_pred CCCCCcccccccchhhhceec--C--CC-CcccHhhHHHHh--hcCCCCCCCCC
Q psy10659 17 PPDNDLLCPICFELIREAHIT--R--CG-HTFCFSCISKCV--ELQIKCPKCSA 63 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~~p~~~--~--Cg-H~fC~~Ci~~~~--~~~~~CP~C~~ 63 (140)
+..+...| +|.......++. . |. .-||..|+.--. .+...||.|..
T Consensus 7 d~~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 44567888 999865433322 4 54 789999986211 12456888854
No 244
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.98 E-value=23 Score=18.72 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=22.3
Q ss_pred CcccccccchhhhceecCCCCcccHhhHHHHhh-----cCCCCCCCCCCCCCC
Q psy10659 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVE-----LQIKCPKCSASLPDM 68 (140)
Q Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----~~~~CP~C~~~~~~~ 68 (140)
.+.|.+|...|... .-+..... ....|+.|++.+...
T Consensus 4 py~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 4 PFFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CEECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 46788877777654 22222222 235799999877653
No 245
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.33 E-value=17 Score=21.38 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.4
Q ss_pred CCCCCcccccccc
Q psy10659 17 PPDNDLLCPICFE 29 (140)
Q Consensus 17 ~~~~~~~C~IC~~ 29 (140)
++.++..||+|..
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 5677889999976
No 246
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.20 E-value=24 Score=14.39 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPD 67 (140)
Q Consensus 56 ~~CP~C~~~~~~ 67 (140)
..|+.|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 468888877654
No 247
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.19 E-value=23 Score=15.59 Aligned_cols=13 Identities=31% Similarity=0.963 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCC
Q psy10659 55 QIKCPKCSASLPD 67 (140)
Q Consensus 55 ~~~CP~C~~~~~~ 67 (140)
...|+.|++.+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 3578889876654
No 248
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.09 E-value=48 Score=15.70 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=11.2
Q ss_pred CCcccccccchhhhc
Q psy10659 20 NDLLCPICFELIREA 34 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p 34 (140)
..+.|.+|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 11 KQVACEICGKIFRDV 25 (48)
T ss_dssp CSEEETTTTEEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 458899988877654
No 249
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.03 E-value=14 Score=19.61 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.4
Q ss_pred CCCCCcccccccchhh
Q psy10659 17 PPDNDLLCPICFELIR 32 (140)
Q Consensus 17 ~~~~~~~C~IC~~~~~ 32 (140)
.+-+-+.||+|...+.
T Consensus 6 ~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 6 GLLEILACPACHAPLE 21 (56)
T ss_dssp SCTTSCCCSSSCSCEE
T ss_pred HHHhheeCCCCCCcce
Confidence 4557889999998654
No 250
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=28.37 E-value=19 Score=24.23 Aligned_cols=26 Identities=31% Similarity=0.709 Sum_probs=21.3
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHH
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCIS 49 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~ 49 (140)
.....|++|.+.+-+. |-..|..|..
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-----CCcCCccccC
Confidence 4667899999988766 8899999964
No 251
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.79 E-value=14 Score=20.62 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=9.2
Q ss_pred CCCCCCCCCCC
Q psy10659 56 IKCPKCSASLP 66 (140)
Q Consensus 56 ~~CP~C~~~~~ 66 (140)
..||.|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999999875
No 252
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.65 E-value=29 Score=18.29 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCCcccccccchhhhceecCCCCcccHhhHHHHh-----hcCCCCCCCCCCCCC
Q psy10659 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCV-----ELQIKCPKCSASLPD 67 (140)
Q Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----~~~~~CP~C~~~~~~ 67 (140)
+..+.|++|...|.....+ .... .....|+.|.+.+..
T Consensus 12 ~k~~~C~~C~k~f~~~~~L-----------~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSIL-----------VQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSHHHH-----------HHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCHHHH-----------HHHHHhcCCCCCeECCCCCcccCC
Confidence 3468999998877654221 1111 123579999887654
No 253
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.18 E-value=13 Score=15.28 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPDMN 69 (140)
Q Consensus 56 ~~CP~C~~~~~~~~ 69 (140)
..|+.|++.+....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 3 CQCVMCGKAFTQAS 16 (29)
Confidence 35788887766543
No 254
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=32.55 E-value=14 Score=15.23 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPDMN 69 (140)
Q Consensus 56 ~~CP~C~~~~~~~~ 69 (140)
..|+.|++.+....
T Consensus 4 ~~C~~C~k~f~~~~ 17 (30)
T 2lvr_A 4 YVCIHCQRQFADPG 17 (30)
Confidence 45788877766543
No 255
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.32 E-value=36 Score=14.64 Aligned_cols=12 Identities=25% Similarity=0.874 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPD 67 (140)
Q Consensus 56 ~~CP~C~~~~~~ 67 (140)
..|+.|++.+..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 469999887654
No 256
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.78 E-value=58 Score=14.99 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=8.7
Q ss_pred Ccccccccchhhh
Q psy10659 21 DLLCPICFELIRE 33 (140)
Q Consensus 21 ~~~C~IC~~~~~~ 33 (140)
.+.|++|...|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (45)
T 2epq_A 10 PYSCPVCGLRFKR 22 (45)
T ss_dssp SSEETTTTEECSC
T ss_pred CCcCCCCCcccCC
Confidence 4677777776654
No 257
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.65 E-value=41 Score=17.35 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q psy10659 55 QIKCPKCSASLPD 67 (140)
Q Consensus 55 ~~~CP~C~~~~~~ 67 (140)
...||.|+..+..
T Consensus 12 ~~~CPrCn~~f~~ 24 (49)
T 2e72_A 12 RKICPRCNAQFRV 24 (49)
T ss_dssp CCCCTTTCCCCSS
T ss_pred ceeCCcccccccc
Confidence 4679999987664
No 258
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.57 E-value=22 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=11.7
Q ss_pred CCCCcccccccchhh
Q psy10659 18 PDNDLLCPICFELIR 32 (140)
Q Consensus 18 ~~~~~~C~IC~~~~~ 32 (140)
+-+.+.||+|...+.
T Consensus 7 LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 7 LLEVLACPKDKGPLR 21 (67)
T ss_dssp GTCCCBCTTTCCBCE
T ss_pred HHHHhCCCCCCCcCe
Confidence 447789999998664
No 259
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.69 E-value=36 Score=18.42 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=9.9
Q ss_pred CCCCcccccccch
Q psy10659 18 PDNDLLCPICFEL 30 (140)
Q Consensus 18 ~~~~~~C~IC~~~ 30 (140)
-.+...|.||+..
T Consensus 6 ~~d~~~C~iC~KT 18 (62)
T 2a20_A 6 KGDAPTCGICHKT 18 (62)
T ss_dssp SSCCCCCSSSSCS
T ss_pred cCCcchhhhhccc
Confidence 3567899999873
No 260
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.59 E-value=31 Score=14.91 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCC
Q psy10659 55 QIKCPKCSASLPD 67 (140)
Q Consensus 55 ~~~CP~C~~~~~~ 67 (140)
...|+.|.+.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 3568888876654
No 261
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.50 E-value=23 Score=14.31 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCC
Q psy10659 57 KCPKCSASLPDM 68 (140)
Q Consensus 57 ~CP~C~~~~~~~ 68 (140)
.|+.|++.+...
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 1rik_A 4 ACPECPKRFMRS 15 (29)
T ss_dssp ECSSSSCEESCS
T ss_pred cCCCCCchhCCH
Confidence 588888766543
No 262
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.17 E-value=46 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=18.5
Q ss_pred CCcccccccchhhhceecCCCCcccHh
Q psy10659 20 NDLLCPICFELIREAHITRCGHTFCFS 46 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~ 46 (140)
....|..|...-..=+-+.|||+.|.+
T Consensus 33 ~~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 33 CGWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CBCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCCcCccccCcCceEEeccCCccccCc
Confidence 346799998764333457899998843
No 263
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.05 E-value=21 Score=19.74 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCCCCCcccccccchhhhc-eec---CCCCcccHhhHHHHh----hcCCCCCCCCC
Q psy10659 16 SPPDNDLLCPICFELIREA-HIT---RCGHTFCFSCISKCV----ELQIKCPKCSA 63 (140)
Q Consensus 16 ~~~~~~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~----~~~~~CP~C~~ 63 (140)
.+..+...| ||.....+. ..+ .|..=||..|+.--. .....||.|+.
T Consensus 11 ~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 344567889 799876432 233 677778888865321 13466888864
No 264
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.70 E-value=24 Score=14.20 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCC
Q psy10659 56 IKCPKCSASLPD 67 (140)
Q Consensus 56 ~~CP~C~~~~~~ 67 (140)
..|+.|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 358888776554
No 265
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.69 E-value=26 Score=23.41 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.7
Q ss_pred CCCCCCCC
Q psy10659 57 KCPKCSAS 64 (140)
Q Consensus 57 ~CP~C~~~ 64 (140)
.||.|+.+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 79999875
No 266
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.67 E-value=45 Score=18.58 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=9.3
Q ss_pred cCCCCCCCCCCCCC
Q psy10659 54 LQIKCPKCSASLPD 67 (140)
Q Consensus 54 ~~~~CP~C~~~~~~ 67 (140)
....||.|+..+-.
T Consensus 44 d~irCp~CG~RILy 57 (70)
T 1twf_L 44 DAVRCKDCGHRILL 57 (70)
T ss_dssp STTCCSSSCCCCCB
T ss_pred CCccCCCCCceEeE
Confidence 34679999875443
No 267
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.53 E-value=20 Score=15.89 Aligned_cols=13 Identities=23% Similarity=0.981 Sum_probs=9.0
Q ss_pred Ccccccccchhhh
Q psy10659 21 DLLCPICFELIRE 33 (140)
Q Consensus 21 ~~~C~IC~~~~~~ 33 (140)
...||+|...+-.
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 3678888876643
No 268
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=22.74 E-value=50 Score=17.20 Aligned_cols=39 Identities=13% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCCccccc--ccchhhhceecCCCCcccHhhHHHHh-----hcCCCCCCCCCCCCC
Q psy10659 18 PDNDLLCPI--CFELIREAHITRCGHTFCFSCISKCV-----ELQIKCPKCSASLPD 67 (140)
Q Consensus 18 ~~~~~~C~I--C~~~~~~p~~~~CgH~fC~~Ci~~~~-----~~~~~CP~C~~~~~~ 67 (140)
-...+.|++ |...|..... +.... .....|+.|++.+..
T Consensus 16 ~~~~~~C~~~~C~k~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~ 61 (73)
T 1f2i_G 16 KMRPYACPVESCDRRFSRSDE-----------LTRHIRIHTGQKPFQCRICMRNFSR 61 (73)
T ss_dssp CCCCEECSSTTBCCEESSHHH-----------HHHHHHHHHCCCCEECTTTCCEESC
T ss_pred CCCccCCcCCCCCCccCCHHH-----------HHHHHHhhCCCCCeECCCCCchhCC
Confidence 345688874 8776654321 11111 123579999987654
No 269
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=22.32 E-value=34 Score=19.89 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=6.2
Q ss_pred CCCCCCccccc
Q psy10659 16 SPPDNDLLCPI 26 (140)
Q Consensus 16 ~~~~~~~~C~I 26 (140)
..++-.|.||.
T Consensus 18 ~~L~t~F~CPf 28 (85)
T 1wii_A 18 GTLETQFTCPF 28 (85)
T ss_dssp CCCSSCCCCTT
T ss_pred CCCCCeEcCCC
Confidence 35555666663
No 270
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.33 E-value=69 Score=17.98 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=6.3
Q ss_pred cCCCCCCCCCC
Q psy10659 54 LQIKCPKCSAS 64 (140)
Q Consensus 54 ~~~~CP~C~~~ 64 (140)
....||.|++.
T Consensus 25 ~ky~C~fCgk~ 35 (72)
T 3jyw_9 25 ARYDCSFCGKK 35 (72)
T ss_dssp SCBCCSSCCSS
T ss_pred cCccCCCCCCc
Confidence 34567777643
No 271
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.02 E-value=41 Score=22.73 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q psy10659 56 IKCPKCSAS 64 (140)
Q Consensus 56 ~~CP~C~~~ 64 (140)
-.||.|+.+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 479999864
No 272
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.02 E-value=1e+02 Score=17.75 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=10.9
Q ss_pred CCcccccccchhhhc
Q psy10659 20 NDLLCPICFELIREA 34 (140)
Q Consensus 20 ~~~~C~IC~~~~~~p 34 (140)
..+.|++|...|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 6 SGVECPTCHKKFLSK 20 (124)
T ss_dssp SSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCcCCCH
Confidence 457899998877543
Done!