RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10659
(140 letters)
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 58.9 bits (142), Expect = 5e-13
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 1 MSATSTPSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ---IK 57
M ++ ++ + L CPIC ELI+E T+C H FC C+ K + + +
Sbjct: 1 MDLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ 60
Query: 58 CPKCSASLPDMNSVFPNFLLNELVQK-HKIKSAQDSD 93
CP C + S+ + ++LV++ KI A D
Sbjct: 61 CPLCKNDIT-KRSLQESTRFSQLVEELLKIICAFQLD 96
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 55.5 bits (133), Expect = 5e-12
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 18 PDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLL 77
CPI EL+++ I G T+ S I K ++ K S + PN++L
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 78 NELVQKHKIKS 88
L+ +
Sbjct: 65 KSLIALWCESN 75
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 51.2 bits (122), Expect = 3e-10
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 10 SLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQ-IKCPKCSASLPDM 68
+ LC IC E ++ I CGH C SC++ E + CP C +
Sbjct: 12 QYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71
Query: 69 NSVFPN 74
+ +
Sbjct: 72 EPIVVD 77
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 50.2 bits (119), Expect = 8e-10
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLLNEL 80
L I FEL+RE IT G T+ I + ++ + S + PN + E+
Sbjct: 7 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEV 66
Query: 81 VQKHKIKS 88
+ ++
Sbjct: 67 IDAFISEN 74
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 49.9 bits (119), Expect = 9e-10
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 19 DNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQI-KCPKCSASLPDMNSVFP-NFL 76
+ C IC ++ + T C H FC CI +C+++ CP C + P
Sbjct: 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSF 80
Query: 77 LNEL 80
LN L
Sbjct: 81 LNIL 84
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 47.2 bits (112), Expect = 5e-09
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 21 DLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKCSASLP 66
L C C + + C HT C C+ ++CP C A P
Sbjct: 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 46.5 bits (110), Expect = 1e-08
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 24 CPICFELIRE-AHITRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68
CPIC E + C H FC+ CI++ + CP C + +
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 45.5 bits (107), Expect = 6e-08
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 19 DNDLLCPICFELIREAH-ITRCGHTFCFSCISKCVELQIKCPKCSASLPDMNSVFPNFLL 77
+ L C C ++RE + C H FC +C+S C + CP C + + N L
Sbjct: 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC--IGTGCPVCYTPA-WIQDLKINRQL 76
Query: 78 NELVQKHK 85
+ ++Q
Sbjct: 77 DSMIQLCS 84
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 42.5 bits (100), Expect = 4e-07
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 19 DNDLLCPICFELIREAH----ITRCGHTFCFSCISKCVELQIKCPKCSASL 65
D+ + C +C + + + RCGH F C+ + CP C ++
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 42.9 bits (100), Expect = 7e-07
Identities = 16/91 (17%), Positives = 33/91 (36%)
Query: 2 SATSTPSRSLKRQHSPPDNDLLCPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKC 61
S +S + + ++ ++ L PI L+ + + L +
Sbjct: 3 SGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPF 62
Query: 62 SASLPDMNSVFPNFLLNELVQKHKIKSAQDS 92
+ S M+ + PN L E +Q+ + Q S
Sbjct: 63 NRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 38.6 bits (89), Expect = 1e-05
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 22 LLCPICFELIREAHITR-CGHTFCFSCISKCVELQIKCPKCSASL 65
+LC I ++ R ++ F S + + V+ P + L
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 35.8 bits (82), Expect = 3e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 24 CPICFELIREAHITR---CGHTFCFSCISKCVELQI--------KCP--KCSASLPDMNS 70
C +C +T C FC C+ + VEL I CP C +
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67
Query: 71 VFPNFLLNELVQKHK 85
+ E++Q++K
Sbjct: 68 EIECMVAAEIMQRYK 82
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 33.9 bits (77), Expect = 6e-04
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 24 CPICFELIREAH----ITRCGHTFCFSCISKCVELQ-IKCPKCSASLPD 67
CP+C E + CG+ C C + + CP C P+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 33.6 bits (76), Expect = 8e-04
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 21 DLLCPICFELIREAH-----ITRCGHTFCFSCISKCVEL-QIKCPKCSASL 65
D CP C + CGHT C SC+ CP+C L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 31.8 bits (71), Expect = 0.004
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 19 DNDLLCPICFELIREAHITR-----CGHTFCFSCISKCVELQI--KCPKC 61
++ +C IC E + SC+S + + C C
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC 53
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 32.0 bits (72), Expect = 0.005
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 24 CPICFELIREAHITRCGHTFCFSCISKCVELQIKCPKC 61
C H F F CIS+ ++ + CP
Sbjct: 42 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 31.5 bits (70), Expect = 0.013
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 25/90 (27%)
Query: 8 SRSLKRQHSPPDNDLLCPICFELIREAH------------------ITRCGHTFCFSCI- 48
+ + P+ D C IC E + A +T+C H F C+
Sbjct: 14 RKYTEELKVAPEED--CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL 71
Query: 49 ----SKCVELQIKCPKCSASLPDMNSVFPN 74
+ + ++CP C + P
Sbjct: 72 AMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 29.1 bits (65), Expect = 0.057
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 17 PPDNDLLCPICFELIREAHITRC----GHTFCFSCISKCVELQI-----------KCPKC 61
L C IC E + + H +C H FCF C + ++ Q KCP
Sbjct: 4 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLV 63
Query: 62 SASLP 66
+++P
Sbjct: 64 GSNVP 68
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.3 bits (55), Expect = 0.67
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 4/42 (9%)
Query: 24 CPIC---FELIREAHITR-CGHTFCFSCISKCVELQIKCPKC 61
C C F C FC +C S+ C C
Sbjct: 3 CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 44
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.8 bits (56), Expect = 1.5
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 9/59 (15%)
Query: 12 KRQHSPPDNDLLCPIC-----FELIREAHITRCGHTFCFSCISKCVELQIK----CPKC 61
R++ D C +C C C C + + C C
Sbjct: 39 MRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC 97
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 25.0 bits (54), Expect = 1.6
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 24 CPICFE----LIREAHITRCGHTFCFSCISKCVEL 54
C C R+ H CG FC C +K L
Sbjct: 16 CHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPL 50
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 24.6 bits (53), Expect = 1.6
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 24 CPIC---FELIREAHIT-RCGHTFCFSCISKCVEL 54
C C F + H +CG+ FC C +K
Sbjct: 11 CMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALT 45
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.6 bits (53), Expect = 1.9
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 24 CPICFE----LIREAHITRCGHTFCFSCISKCVELQ 55
C IC + L R+ H CG FC S + L
Sbjct: 8 CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLP 43
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 24.6 bits (53), Expect = 2.7
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 24 CPICFE----LIREAHITRCGHTFCFSCISKCVELQIKCPK 60
C C +E CG FC C+S +
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNT 52
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of
primase-helicase {Bacteriophage T7 [TaxId: 10760]}
Length = 54
Score = 23.7 bits (51), Expect = 3.2
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 40 GHTFCFSC 47
GHTFC+ C
Sbjct: 23 GHTFCYVC 30
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 24.5 bits (52), Expect = 4.4
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 24 CPIC-FELIREAHITRCGHTFC 44
CP C L++E + RC + C
Sbjct: 6 CPECGHRLVKEGKVHRCPNPLC 27
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 23.4 bits (50), Expect = 6.1
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 24 CPICFELIR------EAHITRCGHTFCFSC 47
C C EA +C TFC C
Sbjct: 21 CAQCSFGFIYEREQLEATCPQCHQTFCVRC 50
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia
coli [TaxId: 562]}
Length = 56
Score = 22.7 bits (49), Expect = 7.2
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 6 TPSRSLKRQ----HSPPDNDLLCPICFELIREAHITRCGH 41
T S+ R+ + + + E HIT G+
Sbjct: 8 TRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGY 47
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 24.1 bits (52), Expect = 8.6
Identities = 6/24 (25%), Positives = 7/24 (29%), Gaps = 4/24 (16%)
Query: 42 TFCFSC----ISKCVELQIKCPKC 61
CF+C E C C
Sbjct: 516 DKCFTCGSTHEMTPTENGFVCSIC 539
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 24.0 bits (51), Expect = 9.5
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 17 PPDNDLLCPICFELIREA-----HI---TRCGHTFCFSCISKCVELQIKCPKCSASLPDM 68
D +L C C E + E HI H + I K + C C L D
Sbjct: 59 SIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKV--CECVCMHCGKLLLDE 116
Query: 69 NSVF 72
++
Sbjct: 117 HNEL 120
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 22.5 bits (48), Expect = 9.7
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 24 CPICFELIREA----HIT----RCGHTFCFSC 47
CP C I + H+ C FC+ C
Sbjct: 9 CPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVC 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.397
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,720
Number of extensions: 20075
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 47
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)