BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10662
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 121 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 225
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 226 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 260
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 92
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 93 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 152
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 153 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 213 KLWDYSKGKCLKTY 226
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 74 NLLVSASDDKTLKIW 88
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 149 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 253
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 254 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 288
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 120
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 121 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 180
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 181 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 241 KLWDYSKGKCLKTY 254
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 102 NLLVSASDDKTLKIW 116
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 142 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 246
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 247 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 281
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 113
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 114 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 173
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 174 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 234 KLWDYSKGKCLKTY 247
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 95 NLLVSASDDKTLKIW 109
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 147 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 251
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 252 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 286
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 118
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 119 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 178
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 179 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 239 KLWDYSKGKCLKTY 252
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 100 NLLVSASDDKTLKIW 114
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 131 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 235
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 236 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 270
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 223 KLWDYSKGKCLKTY 236
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 84 NLLVSASDDKTLKIW 98
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 125 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 229
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 230 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 264
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 217 KLWDYSKGKCLKTY 230
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 78 NLLVSASDDKTLKIW 92
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 125 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 229
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 230 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 264
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 217 KLWDYSKGKCLKTY 230
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 78 NLLVSASDDKTLKIW 92
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 128 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 232
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 233 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 267
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 220 KLWDYSKGKCLKTY 233
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + ++S D +K+W ++ GH + V ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 81 NLLVSASDDKTLKIW 95
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 124 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 228
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 229 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 263
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 95
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 96 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 155
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 156 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 216 KLWDYSKGKCLKTY 229
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 77 NLLVSASDDKTLKIW 91
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 126 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 230
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 231 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 265
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 97
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 98 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 157
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 158 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 218 KLWDYSKGKCLKTY 231
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 79 NLLVSASDDKTLKIW 93
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 131 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 235
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 236 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 270
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 223 KLWDYSKGKCLKTY 236
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 84 NLLVSASDDKTLKIW 98
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 131 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 235
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 236 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 270
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 103 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 162
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 223 KLWDYSKGKCLKTY 236
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 84 NLLVSASDDKTLKIW 98
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 130 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 234
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 235 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 269
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 101
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 102 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 161
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 162 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 222 KLWDYSKGKCLKTY 235
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 83 NLLVSASDDKTLKIW 97
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 128 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 232
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 233 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 267
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 220 KLWDYSKGKCLKTY 233
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 81 NLLVSASDDKTLKIW 95
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T + L H VS V F N++ IVS+S D ++W+
Sbjct: 128 GSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 232
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 233 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNLVYIW 267
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-------YKGLSKH---MHAYR 114
CL++ GH N + + GS + S+ I+ K L H + A
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 159
Query: 115 FDTVRSMLESS----------------FVGHINDKN----FVGLATDGDYVACGSENNSL 154
F+ S++ SS I+D N FV + +G Y+ + +N+L
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 155 YIYYKGLSKHMHAY 168
++ K + Y
Sbjct: 220 KLWDYSKGKCLKTY 233
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 81 NLLVSASDDKTLKIW 95
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T L H VS V F N++ IVS+S D ++W+
Sbjct: 128 GSFDESVRIWDVK-TGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N+L ++ D + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-------------DYSKGKCLKT 232
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 233 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNMVYIW 267
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 29/210 (13%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
CL++ GH N + + GS + S+ I+ D M
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------------DVKTGMCLK 146
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNED 184
+ H + + V DG + S Y GL + +++++ D
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSS--------YDGLCRIWDTASGQCLKTLI------D 192
Query: 185 DTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
D N VS V + + ++AA +K++
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 81 NLLVSASDDKTLKIW 95
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINK 64
+A S D V ++ RN + L GH +V V F + + I SAS D +KLWN N
Sbjct: 154 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
L++ GH + V + DG +A S++ ++ ++ + L
Sbjct: 212 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQ 256
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYK 159
+ GH + N V DG +A S++ ++ ++ +
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINK 64
+A S D V ++ RN + L GH +V V F + + I SAS D +KLWN N
Sbjct: 400 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
L++ GH + V + DG +A S++ ++ ++ + L
Sbjct: 458 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQ 502
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYK 159
+ GH + V + DG +A S++ ++ ++ +
Sbjct: 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINK 64
+A S D V ++ RN + L GH +V+ V F + + I SAS D +KLWN N
Sbjct: 236 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
L++ GH + V + DG +A S++ ++ ++ + +H+
Sbjct: 294 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQ------------- 338
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYK 159
+ GH + V + DG +A S++ ++ ++ +
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINK 64
+A S D V ++ RN + L GH +V V F + + I SAS D +KLWN N
Sbjct: 72 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
L++ GH + V + DG +A S++ ++ ++ + L
Sbjct: 130 -QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQ 174
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYK 159
+ GH + V + DG +A S++ ++ ++ +
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 209
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 18/155 (11%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINK 64
+A S D V ++ RN + L GH +V V F + + I SAS D +KLWN N
Sbjct: 318 IASASDDKTVKLWN-RNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
L++ GH + V + DG +A S++ ++ ++ + L
Sbjct: 376 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQ 420
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYK 159
+ GH + V + D +A S++ ++ ++ +
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 30 FKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGD 88
+ H +V V F + + I SAS D +KLWN N L++ GH + V + DG
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 89 YVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACG 148
+A S++ ++ ++ + L + GH + V + DG +A
Sbjct: 71 TIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 116
Query: 149 SENNSLYIYYK 159
S++ ++ ++ +
Sbjct: 117 SDDKTVKLWNR 127
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINK 64
+A S D V ++ RN + L GH +V V F + + I SAS D +KLWN N
Sbjct: 482 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
L++ GH + V + DG +A S + ++ ++
Sbjct: 540 -QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWN 61
+A S D V ++ RN + L GH +V V F + + I SAS+D +KLWN
Sbjct: 523 IASASDDKTVKLWN-RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPN 66
GS D V +D++ T L H VS V F N++ IVS+S D ++W+
Sbjct: 128 GSFDESVRIWDVK-TGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 67 CLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
CL++ + N +FV + +G Y+ + +N L ++ D + +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW-------------DYSKGKCLKT 232
Query: 126 FVGHINDK-----NFVGLATDGDYVACGSENNSLYIY 157
+ GH N+K NF T G ++ GSE+N +YI+
Sbjct: 233 YTGHKNEKYCIFANFS--VTGGKWIVSGSEDNMVYIW 267
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 29/210 (13%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINK 64
LA SAD + + + K + GH+ +S V + + ++ VSAS D LK+W+++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
CL++ GH N + + GS + S+ I+ D M
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------------DVKTGMCLK 146
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNED 184
+ H + + V DG + S Y GL + +++++ D
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSS--------YDGLCRIWDTASGQCLKTLI------D 192
Query: 185 DTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
D N VS V + + ++AA +K++
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GH KAVS VKF N E + S+S D +K+W ++ GH + V ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 88 DYVACGSENNSLYIY 102
+ + S++ +L I+
Sbjct: 81 NLLVSASDDKTLKIW 95
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAV---FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
++A G D+ Y+L+ + + V GH +S +FL+ IV++S D+ LW+
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 181
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
I +F GH D + LA D G+ + S ++ D M
Sbjct: 182 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-------------DVREGM 228
Query: 122 LESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+F GH +D N + +G+ A GS++ + ++ + + Y D +
Sbjct: 229 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 280
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
VS + D+ KLW++ + C ++F GH +D N + +G+ A GS++ + ++ +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270
Query: 109 HMHAYR-------------------------------FDTVRSMLESSFVGHINDKNFVG 137
+ Y +D +++ GH N + +G
Sbjct: 271 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 330
Query: 138 LATDGDYVACGSENNSLYIY 157
+ DG VA GS ++ L I+
Sbjct: 331 VTDDGMAVATGSWDSFLKIW 350
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 6 LAFGSADHCVHYYDLRNTKEALA-----VFKGHRKAVSYVKFLNKEDIVSASTDS-QLKL 59
A GS D +DLR +E + + G ++ V F ++ A D +
Sbjct: 252 FATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNV 307
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
W+ K + GH N + +G+ DG VA GS ++ L I+
Sbjct: 308 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+VSAS D +L +W+ N + + + A G+YVACG +N IY
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 135
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
R+ GH+ + TD + S++ L I+ + +HA L SS+V
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-------LRSSWV- 111
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
A G+YVACG +N IY
Sbjct: 112 -----MTCAYAPSGNYVACGGLDNICSIY 135
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAV---FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
++A G D+ Y+L+ + + V GH +S +FL+ IV++S D+ LW+
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
I +F GH D + LA D G+ + S ++ D M
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-------------DVREGM 217
Query: 122 LESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+F GH +D N + +G+ A GS++ + ++ + + Y D +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
VS + D+ KLW++ + C ++F GH +D N + +G+ A GS++ + ++ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 109 HMHAYR-------------------------------FDTVRSMLESSFVGHINDKNFVG 137
+ Y +D +++ GH N + +G
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 138 LATDGDYVACGSENNSLYIY 157
+ DG VA GS ++ L I+
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 6 LAFGSADHCVHYYDLRNTKEALA-----VFKGHRKAVSYVKFLNKEDIVSASTDS-QLKL 59
A GS D +DLR +E + + G ++ V F ++ A D +
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
W+ K + GH N + +G+ DG VA GS ++ L I+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+VSAS D +L +W+ N + + + A G+YVACG +N IY
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
R+ GH+ + TD + S++ L I+ + +HA L SS+V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-------LRSSWV- 100
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
A G+YVACG +N IY
Sbjct: 101 -----MTCAYAPSGNYVACGGLDNICSIY 124
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAV---FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
++A G D+ Y+L+ + + V GH +S +FL+ IV++S D+ LW+
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
I +F GH D + LA D G+ + S ++ D M
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-------------DVREGM 217
Query: 122 LESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+F GH +D N + +G+ A GS++ + ++ + + Y D +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
VS + D+ KLW++ + C ++F GH +D N + +G+ A GS++ + ++ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 109 HMHAYR-------------------------------FDTVRSMLESSFVGHINDKNFVG 137
+ Y +D +++ GH N + +G
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 138 LATDGDYVACGSENNSLYIY 157
+ DG VA GS ++ L I+
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 6 LAFGSADHCVHYYDLRNTKEALA-----VFKGHRKAVSYVKFLNKEDIVSASTDS-QLKL 59
A GS D +DLR +E + + G ++ V F ++ A D +
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
W+ K + GH N + +G+ DG VA GS ++ L I+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D +L +W+ N + + + A G+YVACG +N IY
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
R+ GH+ + TD + S++ L I+ + +HA L SS+V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-------LRSSWV- 100
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
A G+YVACG +N IY
Sbjct: 101 -----MTCAYAPSGNYVACGGLDNICSIY 124
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAV---FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
++A G D+ Y+L+ + + V GH +S +FL+ IV++S D+ LW+
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
I +F GH D + LA D G+ + S ++ D M
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-------------DVREGM 217
Query: 122 LESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+F GH +D N + +G+ A GS++ + ++ + + Y D +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
VS + D+ KLW++ + C ++F GH +D N + +G+ A GS++ + ++ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 109 HMHAYR-------------------------------FDTVRSMLESSFVGHINDKNFVG 137
+ Y +D +++ GH N + +G
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 138 LATDGDYVACGSENNSLYIY 157
+ DG VA GS ++ L I+
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 6 LAFGSADHCVHYYDLRNTKEALA-----VFKGHRKAVSYVKFLNKEDIVSASTDS-QLKL 59
A GS D +DLR +E + + G ++ V F ++ A D +
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
W+ K + GH N + +G+ DG VA GS ++ L I+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D +L +W+ N + + + A G+YVACG +N IY
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
R+ GH+ + TD + S++ L I+ + +HA L SS+V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-------LRSSWV- 100
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
A G+YVACG +N IY
Sbjct: 101 -----MTCAYAPSGNYVACGGLDNICSIY 124
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAV---FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
++A G D+ Y+L+ + + V GH +S +FL+ IV++S D+ LW+
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
I +F GH D + LA D G+ + S ++ D M
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-------------DVREGM 217
Query: 122 LESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+F GH +D N + +G+ A GS++ + ++ + + Y D +
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
VS + D+ KLW++ + C ++F GH +D N + +G+ A GS++ + ++ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 109 HMHAYR-------------------------------FDTVRSMLESSFVGHINDKNFVG 137
+ Y +D +++ GH N + +G
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 138 LATDGDYVACGSENNSLYIY 157
+ DG VA GS ++ L I+
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 6 LAFGSADHCVHYYDLRNTKEALA-----VFKGHRKAVSYVKFLNKEDIVSASTDS-QLKL 59
A GS D +DLR +E + + G ++ V F ++ A D +
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNV 296
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
W+ K + GH N + +G+ DG VA GS ++ L I+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+VSAS D +L +W+ N + + + A G+YVACG +N IY
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
R+ GH+ + TD + S++ L I+ + +HA L SS+V
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-------LRSSWV- 100
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
A G+YVACG +N IY
Sbjct: 101 -----MTCAYAPSGNYVACGGLDNICSIY 124
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNINK 64
LA SAD + +D + E + GH VS V + N + IVSAS D +K+W +
Sbjct: 165 LASCSADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
C+++F GH V DG +A S + ++ ++
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 21 RNTKEALA------VFKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINKPNCLRSFVG 73
R+ KE + GHR V+ V F + VSAS D+ +K+W+ + R+ G
Sbjct: 89 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG 148
Query: 74 HINDKNFVGLATDGDYVACGSENNSLYIY-YKGLSKHMHAYRFDTVRSMLESSFVGHIND 132
H + + G +A S + ++ ++ ++G F+ +R+M GH ++
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQG---------FECIRTMH-----GHDHN 194
Query: 133 KNFVGLATDGDYVACGSENNSLYIY 157
+ V + +GD++ S + ++ ++
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMW 219
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY----- 102
++S S D +K+W+++ CL + VGH N V + G ++ +++ +L ++
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 103 --YKGLSKHMH 111
K L+ H H
Sbjct: 371 RCMKTLNAHEH 381
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINK 64
L GS D + +D+ +T L GH V V F + I+S + D L++W+
Sbjct: 311 LLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
C+++ H + + YV GS + ++ ++
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNC 67
S D + +D+ T E F GH+ V V K I+S S D +K+W I K C
Sbjct: 83 ASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQC 140
Query: 68 LRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFV 127
L + +GH + + V + + ++++S+ I G K + A+ + + +E+ F+
Sbjct: 141 LATLLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI 193
Query: 128 GHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 166
GH ++ N + + DG +A ++ + ++ K M+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 48 IVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D L W + + +RSF GH + L DG Y S + +L ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 103 YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-YKG- 160
D FVGH +D V + + GS + ++ ++ KG
Sbjct: 93 -------------DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 161 -LSKHMHAYRFDTVRSMLERDRNEDDTNEFVSA 192
L+ + + + ++ ++ +DD+ +SA
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 10 SADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCL 68
S D + +D+ T E F GH+ V V K I+S S D +K+W I K CL
Sbjct: 84 SWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 141
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
+ +GH + + V + + ++++S+ I G K + A+ + + +E+ F+G
Sbjct: 142 ATLLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIG 194
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 166
H ++ N + + DG +A ++ + ++ K M+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-------IVSASTDSQLKLWN 61
GS D + + ++ + LA GH VS V+ + E I+SA D +K WN
Sbjct: 125 GSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 111
+N+ F+GH ++ N + + DG +A ++ + ++ K M+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 48 IVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D L W + + +RSF GH + L DG Y S + +L ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 103 YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-YKG- 160
D FVGH +D V + + GS + ++ ++ KG
Sbjct: 93 -------------DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 161 -LSKHMHAYRFDTVRSMLERDRNEDDTNEFVSA 192
L+ + + + ++ ++ +DD+ +SA
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 10 SADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCL 68
S D + +D+ T E F GH+ V V K I+S S D +K+W I K CL
Sbjct: 84 SWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCL 141
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
+ +GH + + V + + ++++S+ I G K + A+ + + +E+ F+G
Sbjct: 142 ATLLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIG 194
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 166
H ++ N + + DG +A ++ + ++ K M+
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-------IVSASTDSQLKLWN 61
GS D + + ++ + LA GH VS V+ + E I+SA D +K WN
Sbjct: 125 GSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 111
+N+ F+GH ++ N + + DG +A ++ + ++ K M+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 48 IVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D L W + + +RSF GH + L DG Y S + +L ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 103 YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-YKG- 160
D FVGH +D V + + GS + ++ ++ KG
Sbjct: 93 -------------DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 161 -LSKHMHAYRFDTVRSMLERDRNEDDTNEFVSA 192
L+ + + + ++ ++ +DD+ +SA
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNC 67
S D + +D+ T E F GH+ V V K I+S S D +K+W I K C
Sbjct: 77 ASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQC 134
Query: 68 LRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFV 127
L + +GH + + V + + ++++S+ I G K + A+ + + +E+ F+
Sbjct: 135 LATLLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI 187
Query: 128 GHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 166
GH ++ N + + DG +A ++ + ++ K M+
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 226
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 48 IVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D L W + + +RSF GH + L DG Y S + +L ++
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 103 YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-YKG- 160
D FVGH +D V + + GS + ++ ++ KG
Sbjct: 87 -------------DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 133
Query: 161 -LSKHMHAYRFDTVRSMLERDRNEDDTNEFVSA 192
L+ + + + ++ ++ +DD+ +SA
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 166
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNC 67
S D + +D+ T E F GH+ V V K I+S S D +K+W I K C
Sbjct: 83 ASWDKTLRLWDVA-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQC 140
Query: 68 LRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFV 127
L + +GH + + V + + ++++S+ I G K + A+ + + +E+ F+
Sbjct: 141 LATLLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI 193
Query: 128 GHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMH 166
GH ++ N + + DG +A ++ + ++ K M+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 48 IVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D L W + + +RSF GH + L DG Y S + +L ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 103 YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-YKG- 160
D FVGH +D V + + GS + ++ ++ KG
Sbjct: 93 -------------DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 161 -LSKHMHAYRFDTVRSMLERDRNEDDTNEFVSA 192
L+ + + + ++ ++ +DD+ +SA
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNC 67
S D + +D+ T E F GH+ V V K I+S S D +K+W I K C
Sbjct: 83 ASWDKTLRLWDVA-TGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQC 140
Query: 68 LRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFV 127
L + +GH + + V + + ++++S+ I G K + A+ + + +E+ F+
Sbjct: 141 LATLLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKXVKAWNLNQFQ--IEADFI 193
Query: 128 GHINDKNFVGLATDGDYVACGSENNSLYIY 157
GH ++ N + + DG +A ++ + ++
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 21/153 (13%)
Query: 48 IVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++SAS D L W + + +RSF GH + L DG Y S + +L ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 103 YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY-YKG- 160
D FVGH +D V + + GS + ++ ++ KG
Sbjct: 93 -------------DVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ 139
Query: 161 -LSKHMHAYRFDTVRSMLERDRNEDDTNEFVSA 192
L+ + + + ++ ++ +DD+ +SA
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWNI 62
A G D V + L + + G + V+YV + D +++AS D +K+W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 63 NKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+C+ + GH+++ +F + GSE+ +L I+
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWN 61
++ S D + +D + TK +A +GH VS+ F I+S S D LK+WN
Sbjct: 200 YMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWNI 62
A G D V + L + + G + V+YV + D +++AS D +K+W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 63 NKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+C+ + GH+++ +F + GSE+ +L I+
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWN 61
++ S D + +D + TK +A +GH VS+ F I+S S D LK+WN
Sbjct: 200 YMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLK 58
+ A G D V + L + + G + V+YV + D +++AS D +K
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 59 LWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+W+ +C+ + GH+++ +F + GSE+ +L I+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLW 60
+ ++ S D + +D + TK +A +GH VS+ F I+S S D LK+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 61 N 61
N
Sbjct: 256 N 256
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 30 FKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGD 88
+GH VS V N + VSAS D L+LWN+ C F+GH D V + D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 89 YVACGSENNSLYIY-YKG-----LSKHMHAYRFDTVR 119
+ G +N+L ++ KG LS+ H VR
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 36/166 (21%)
Query: 30 FKGHRKAVSYVKFLNKED----IVSASTDSQLKLWNINK-----------PNCLRSFVGH 74
GHR V+ + + +VS S D L W N P+ R GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPD--RRLEGH 66
Query: 75 INDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKN 134
+ V L+ +G++ S ++SL ++ L Y+F +GH D
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLW--NLQNGQCQYKF-----------LGHTKDVL 113
Query: 135 FVGLATDGDYVACGSENNSLYIY-YKG-----LSKHMHAYRFDTVR 174
V + D + G +N+L ++ KG LS+ H VR
Sbjct: 114 SVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF---LNKEDIVSASTDSQLKLWN 61
+ G D+ + ++++ H VS V+F L+ IVS D+ +K+W+
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVA 91
+ + GH N V ++ DG A
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
G+ D + YD N K+ L GH V +K+ + +VS STD +++W+I K C
Sbjct: 138 GADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196
Query: 69 RSFVGHINDKNFVGLAT--DGDYVACGSENNSLYIY----YKGLSKHMHAYRFDTVRSML 122
F GH + + + + Y+ GS +N+L+++ + H + + V
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256
Query: 123 ESS--FVGHIND--KNFVGLATDGDYVACGSENNSLYIY 157
E + FVG + + ++ G+ V GS +N+L ++
Sbjct: 257 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 295
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAV-SYVKFLNKEDIVSASTDSQLKLWNINKPNC 67
GS D+ + +D+ K L + GH + S + ++ +SAS D+ +++W++
Sbjct: 286 GSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344
Query: 68 LRSFVGH--------INDKNFVGLATDG 87
+ + GH ++DK V A DG
Sbjct: 345 MYTLQGHTALVGLLRLSDKFLVSAAADG 372
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 27 LAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHIN 76
+ V +GH +V V + +VS S D+ L +W++ + CL GH +
Sbjct: 263 VGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLK 58
+ A G D V + L + + G + V+YV + D +++AS D +K
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 59 LWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+W+ +C+ + GH+++ +F + GSE+ +L I+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLW 60
+ ++ S D + +D + TK +A +GH VS+ F I+S S D LK+W
Sbjct: 197 DKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 61 N 61
N
Sbjct: 256 N 256
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
G+ D + YD N K+ L GH V +K+ + +VS STD +++W+I K C
Sbjct: 138 GADDKXIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196
Query: 69 RSFVGHINDKNFVGLA--TDGDYVACGSENNSLYIY----YKGLSKHMHAYRFDTVRSML 122
F GH + + + + Y+ GS +N+L+++ + H + + V
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256
Query: 123 ESS--FVGHI--NDKNFVGLATDGDYVACGSENNSLYIY 157
E + FVG + + + ++ G+ V GS +N+L ++
Sbjct: 257 EENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVW 295
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAV-SYVKFLNKEDIVSASTDSQLKLWNINKPNC 67
GS D+ + +D+ K L + GH + S + ++ +SAS D+ +++W++
Sbjct: 286 GSYDNTLIVWDVAQXK-CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
Query: 68 LRSFVGH--------INDKNFVGLATDG 87
+ GH ++DK V A DG
Sbjct: 345 XYTLQGHTALVGLLRLSDKFLVSAAADG 372
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 27 LAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHIN 76
+ V +GH +V V + +VS S D+ L +W++ + CL GH +
Sbjct: 263 VGVLRGHXASVRTVSG-HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTD 311
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 30/215 (13%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALA-VFKGHRKAVSYVKFLNKEDIV-SASTDSQLKL 59
NS + GS D V + R+ + L +GH+ V V + I S+S D+ ++L
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVR 119
W++ ++S D + + D Y+A G+ + I+ G+ Y DT
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF--GVESGKKEYSLDTRG 164
Query: 120 SMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLER 179
+ S + + DG Y+A G+ + + I+ K +H +
Sbjct: 165 KFILS-----------IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP----- 208
Query: 180 DRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
+ ++ + S++LV A+ G IKIY
Sbjct: 209 ----------IRSLTFSPDSQLLVTASDDGYIKIY 233
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
+LA G+ D ++ +D+ T + L +GH + + F + + +V+AS D +K++++
Sbjct: 178 YLASGAIDGIINIFDIA-TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 64 KPNCLRSFVGH 74
N + GH
Sbjct: 237 HANLAGTLSGH 247
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWN 61
++A SAD V +D T + + + H + V+ F NK + + + S D LKLW+
Sbjct: 678 YIATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+N+ C + GH N N + D + +A S + +L ++
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 30 FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDY 89
+ H++ V + L ++S S D +K+WN+ R F H G
Sbjct: 1047 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH-----------QGTV 1095
Query: 90 VACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGS 149
++C +++ K + FD + + E GH + DG +A G
Sbjct: 1096 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--LKGHNGCVRCSAFSLDGILLATGD 1153
Query: 150 ENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAA 205
+N + I+ + +H+ + + + +V+ VC+ S+ LV+A
Sbjct: 1154 DNGEIRIWNVSDGQLLHSC------APISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWN 61
++A SAD V +D T + + + H + V+ F NK + + + S D LKLW+
Sbjct: 671 YIATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+N+ C + GH N N + D + +A S + +L ++
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 30 FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDY 89
+ H++ V + L ++S S D +K+WN+ R F H G
Sbjct: 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH-----------QGTV 1088
Query: 90 VACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGS 149
++C +++ K + FD + + E GH + DG +A G
Sbjct: 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--LKGHNGCVRCSAFSLDGILLATGD 1146
Query: 150 ENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAA 205
+N + I+ + +H+ + + + +V+ VC+ S+ LV+A
Sbjct: 1147 DNGEIRIWNVSDGQLLHSC------APISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLKLWNIN 63
LA GSAD V +DLRN K L F+ H+ + V++ N+ + S+ TD +L +W+++
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 64 K 64
K
Sbjct: 349 K 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLKLWNIN 63
LA GSAD V +DLRN K L F+ H+ + V + N+ + S+ TD +L +W+++
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 64 K--------------PNCLRSFVGHINDKNFVGLATDGDYVACG-SENNSLYIY 102
K P L GH + + +V C SE+N + I+
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLKLWNIN 63
LA GSAD V +DLRN K L F+ H+ + V++ N+ + S+ TD +L +W+++
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 64 K 64
K
Sbjct: 357 K 357
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLKLWNIN 63
LA GSAD V +DLRN K L F+ H+ + V++ N+ + S+ TD +L +W+++
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 64 K 64
K
Sbjct: 355 K 355
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLKLWNIN 63
LA GSAD V +DLRN K L F+ H+ + V++ N+ + S+ TD +L +W+++
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 64 K 64
K
Sbjct: 353 K 353
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLKLWNIN 63
LA GSAD V +DLRN K L F+ H+ + V + N+ + S+ TD +L +W+++
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 64 K 64
K
Sbjct: 351 K 351
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 31 KGHRKAVSYVKFLN---KEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
+GHR VS V+F + IVSAS D +K+WN++ + GH + V ++ DG
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 88 DYVACGSENNSLYIYYKGLSKHMHAYRFDTV 118
A G ++ + ++ K +++ ++V
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 44 NKEDIVSASTDSQLKLWNINKPN-----CLRSFVGHINDKNFVGLATDGDYVACGSENNS 98
N + IVSAS D + LW + K + R GH + V L++DG + GS +
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 99 LYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
L ++ D + FVGH D V + D + S + ++ ++
Sbjct: 454 LRLW-------------DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 70/185 (37%), Gaps = 31/185 (16%)
Query: 30 FKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGD 88
F GH K V V F L+ IVSAS D +KLWN +G G D
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT---------LGECKYTISEGGEGHRD 518
Query: 89 YVACGS-ENNSLY--IYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYV 145
+V+C N+L I K + + + L S+ GH + V ++ DG
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 146 ACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAA 205
A G ++ + ++ K +++ + N + A+C+ L AA
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSL----------------EANSVIHALCFSPNRYWLCAA 620
Query: 206 NSQGI 210
GI
Sbjct: 621 TEHGI 625
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
GS D + ++ T E + GH V + L+++ +VS S D+ L++W+I CL
Sbjct: 175 GSTDRTLKVWNA-ETGECIHTLYGHTSTVRCM-HLHEKRVVSGSRDATLRVWDIETGQCL 232
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
+GH+ V DG V G+ + + ++ +H + G
Sbjct: 233 HVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-------------G 277
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
H N L DG +V GS + S+ ++
Sbjct: 278 HTN--RVYSLQFDGIHVVSGSLDTSIRVW 304
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKG---HRKAVSYVKFLNKEDIVSASTDSQLKLWNI 62
L G+AD V +D++ T + L +G H+ AV+ ++F NK ++++S D +KLW++
Sbjct: 332 LVSGNADSTVKIWDIK-TGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDL 389
Query: 63 NKPNCLRSFV 72
+R+ V
Sbjct: 390 KTGEFIRNLV 399
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINK 64
H+ GS D + +D+ T + GH+ S ++ L +VS + DS +K+W+I
Sbjct: 291 HVVSGSLDTSIRVWDV-ETGNCIHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKT 348
Query: 65 PNCLRSFVGHINDKNFVG-LATDGDYVACGSENNSLYIY 102
CL++ G ++ V L + ++V S++ ++ ++
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
G+ D V +D T+ L +GH V ++F + +VS S D+ +++W++ NC+
Sbjct: 255 GAYDFMVKVWD-PETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCI 312
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+ GH + + G+ + + G+ ++++ I+
Sbjct: 313 HTLTGHQSLTS--GMELKDNILVSGNADSTVKIW 344
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 21 RNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNF 80
R ++ V KGH V IVS S D+ LK+W+ CLR+ VGH
Sbjct: 105 RGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG--GV 162
Query: 81 VGLATDGDYVACGSENNSLYIYYKGLSKHMHAY--RFDTVRSMLESSFVGHINDKNFVGL 138
+ + GS + +L ++ + +H TVR M H+++K V
Sbjct: 163 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM-------HLHEKRVVSG 215
Query: 139 ATD 141
+ D
Sbjct: 216 SRD 218
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 4 CHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNI 62
C S D + +DLR T F GH+ V V F + I+SA + ++KLWNI
Sbjct: 89 CFAISSSWDKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 63 NKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSML 122
C S N ++V + ++ Y+ + ++T +
Sbjct: 148 LG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQI 205
Query: 123 ESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
+F H ++ N + ++ +G Y+A G ++ L I+
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 50/225 (22%)
Query: 30 FKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGD 88
+GH VS V + +S S D L+LW++ R FVGH D V ++D
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 89 YVACGSENNSLYIYYK-GLSKHM-----HAYRFDTVR----------------------- 119
+ GS + ++ ++ G+ K+ H+ VR
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 120 ---SMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 176
L+++ +GH N V ++ DG A G ++ ++ KH++
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-------- 253
Query: 177 LERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIYVIPIRVL 221
D + ++A+C+ +R + A + IKI+ + +++
Sbjct: 254 --------DGGDIINALCFSP-NRYWLCAATGPSIKIWDLEGKII 289
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 28 AVFKGHRKAVSYVKFLNK--EDIVSASTDSQLKLWNINKPNC-----LRSFVGHINDKNF 80
KGH V+ + + + I+SAS D + +W + + R+ GH + +
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 81 VGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLAT 140
V +++DG + GS + +L ++ D FVGH D V ++
Sbjct: 92 VVISSDGQFALSGSWDGTLRLW-------------DLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 141 DGDYVACGSENNSLYIYYK-GLSKHM-----HAYRFDTVRSMLERDRNEDDTNEFVSAVC 194
D + GS + ++ ++ G+ K+ H+ VR + + +N + +
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR------FSPNSSNPIIVSCG 192
Query: 195 WRQLSRVLVAAN 206
W +L +V AN
Sbjct: 193 WDKLVKVWNLAN 204
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWN 61
+ GS D + ++ + + H + VS V+F IVS D +K+WN
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFD 116
+ + +GH N V ++ DG A G ++ ++ L++ H Y D
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW--DLNEGKHLYTLD 254
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 50/225 (22%)
Query: 30 FKGHRKAVSYVKFLNKEDI-VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGD 88
+GH VS V + +S S D L+LW++ R FVGH D V ++D
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 89 YVACGSENNSLYIYYK-GLSKHM-----HAYRFDTVR----------------------- 119
+ GS + ++ ++ G+ K+ H+ VR
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 120 ---SMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 176
L+++ +GH N V ++ DG A G ++ ++ KH++
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-------- 230
Query: 177 LERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIYVIPIRVL 221
D + ++A+C+ +R + A + IKI+ + +++
Sbjct: 231 --------DGGDIINALCFSP-NRYWLCAATGPSIKIWDLEGKII 266
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 28 AVFKGHRKAVSYVKFLNK--EDIVSASTDSQLKLWNINKPNC-----LRSFVGHINDKNF 80
KGH V+ + + + I+SAS D + +W + + R+ GH + +
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 81 VGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLAT 140
V +++DG + GS + +L ++ D FVGH D V ++
Sbjct: 69 VVISSDGQFALSGSWDGTLRLW-------------DLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 141 DGDYVACGSENNSLYIYYK-GLSKHM-----HAYRFDTVRSMLERDRNEDDTNEFVSAVC 194
D + GS + ++ ++ G+ K+ H+ VR + + +N + +
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR------FSPNSSNPIIVSCG 169
Query: 195 WRQLSRVLVAAN 206
W +L +V AN
Sbjct: 170 WDKLVKVWNLAN 181
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWN 61
+ GS D + ++ + + H + VS V+F IVS D +K+WN
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 62 INKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFD 116
+ + +GH N V ++ DG A G ++ ++ L++ H Y D
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW--DLNEGKHLYTLD 231
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTK-EALAVFKG----HRKAVSYVKFLNKE-DIVSASTDS 55
+ C +A G D+ Y L K E +A K H +S F N + I++AS D
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 56 QLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRF 115
LW++ L+SF GH D + LA SE + ++ G K A +
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAP--------SETGNTFV-SGGCDK--KAMVW 225
Query: 116 DTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
D +F H +D N V GD A GS++ + +Y
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRK--AVSYVKF-LNKEDIVSASTDSQLKLWNI 62
A GS D YDLR +E +A++ S V F L+ + + D + +W++
Sbjct: 255 FASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Query: 63 NKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
K + + GH N + + ++ DG GS +++L ++
Sbjct: 314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 23 TKEALAVFKGHRKAVSYVKFLNKED---IVSASTDSQLKLWNINKPNCLRSFVGHINDKN 79
T E + + H + V+ F N + + S+D LKLW++N+ C + GH N N
Sbjct: 694 TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVN 753
Query: 80 FVGLATDGDYVACGSENNSLYIY 102
+ D +A S + +L ++
Sbjct: 754 HCRFSPDDKLLASCSADGTLKLW 776
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 30 FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDY 89
+GH++ V + L ++S S D +K+WNI N + FV H G
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCH-----------QGTV 1094
Query: 90 VACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGS 149
++C +++ K + FD + + E GH + D +A G
Sbjct: 1095 LSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE--LRGHNGCVRCSAFSVDSTLLATGD 1152
Query: 150 ENNSLYIY 157
+N + I+
Sbjct: 1153 DNGEIRIW 1160
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 1 MNSCH---------LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIV-S 50
+N CH LA GS+D + +DL N KE GH +V++ +F + ++ S
Sbjct: 708 VNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNF 80
S D LKLW+ N +S IN K F
Sbjct: 767 CSADGTLKLWDATSANERKS----INVKQF 792
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNIN 63
++AFG + + +L N + + F+ H+K V +++F E ++S+S D+++++WN
Sbjct: 981 YIAFGDENGAIEILELVNNRIFQSRFQ-HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ 1039
Query: 64 KPNCL 68
C+
Sbjct: 1040 LDKCI 1044
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINK 64
++ S D + ++ +T E + GH++ ++ +++ ++ +VS S+D+ ++LW+I
Sbjct: 268 YIVSASGDRTIKVWNT-STCEFVRTLNGHKRGIACLQYRDRL-VVSGSSDNTIRLWDIEC 325
Query: 65 PNCLRSFVGH--------INDKNFVGLATDG 87
CLR GH ++K V A DG
Sbjct: 326 GACLRVLEGHEELVRCIRFDNKRIVSGAYDG 356
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
G D+ + +D +NT E + GH +V +++ ++ I++ S+DS +++W++N L
Sbjct: 149 GLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEML 206
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVG 128
+ + H + +G V C S++ S+ ++ M + T+R +L VG
Sbjct: 207 NTLIHHCEAVLHLRF-NNGMMVTC-SKDRSIAVW------DMASPTDITLRRVL----VG 254
Query: 129 HINDKNFVGLATDGDYVACGSENNSLYIY 157
H N V D Y+ S + ++ ++
Sbjct: 255 HRAAVNVVDF--DDKYIVSASGDRTIKVW 281
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 44 NKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+ + IVS D+ +K+W+ N C R GH + + L D + GS ++++ ++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--SVLCLQYDERVIITGSSDSTVRVW 198
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHR--KAVSYVKFLNKEDIVSASTDSQLKL 59
++ LA GS D+ V +++ + + KG +V+ V +LN+ IVSA DS +K
Sbjct: 547 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 606
Query: 60 WNI 62
WN+
Sbjct: 607 WNV 609
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNINKPNC 67
GS D V +DLR T A+ + GH ++ VKF + + + S D +L+++ +
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 68 LRSFVGHI--NDKNF-----VGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRS 120
L+ + ND V + G + G N Y++ L++ +
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL------G 337
Query: 121 MLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
L++S G I + +GL++DG + GS + +L I+
Sbjct: 338 TLQNSHEGRI---SCLGLSSDGSALCTGSWDKNLKIW 371
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 29 VFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
+GH V + + +++ IVSAS D +L +WN + H A +G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 88 DYVACGSENNSLYIY 102
VACG +++ I+
Sbjct: 121 QSVACGGLDSACSIF 135
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 75/190 (39%), Gaps = 30/190 (15%)
Query: 29 VFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPNCLRSF-----VGHINDKNFV 81
V GH+ S +++ ++ +++ S D LW++ + F GH D +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 82 GL-ATDGDYVACGSENNSLYIY-YKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLA 139
+ + + + GS + ++ ++ + S+ + Y GH D N V
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-------------GHEGDINSVKFF 258
Query: 140 TDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLS 199
DG GS++ + ++ + Y E DRN+++ V++V +
Sbjct: 259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYN-------REPDRNDNEL-PIVTSVAFSISG 310
Query: 200 RVLVAANSQG 209
R+L A S G
Sbjct: 311 RLLFAGYSNG 320
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 31 KGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDY 89
+ H ++ +KF + E ++S+S D QLK+W++ + R+ +GH + + G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 90 VACGSENNSLYIYYKGLSKHMHAYR-----FDTVRSMLESSFVG--------HINDKNFV 136
V S + ++ ++ G +H + D V S+ + FVG + KN +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI--ALFVGTDRQLHEISTSKKNNL 253
Query: 137 GLATDGDYVACG 148
T G YV G
Sbjct: 254 EFGTYGKYVIAG 265
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 31 KGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDY 89
+ H ++ +KF + E ++S+S D QLK+W++ + R+ +GH + + G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 90 VACGSENNSLYIYYKGLSKHMHAYR-----FDTVRSMLESSFVG--------HINDKNFV 136
V S + ++ ++ G +H + D V S+ + FVG + KN +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI--ALFVGTDRQLHEISTSKKNNL 250
Query: 137 GLATDGDYVACG 148
T G YV G
Sbjct: 251 EFGTYGKYVIAG 262
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 34/170 (20%)
Query: 2 NSCHLAF-------GSADHCVHYYDLRNTKEALAVF--KGHRKAVSYVKFLN--KEDIVS 50
N C L+F GS D + KE V+ + H +V K ++ + ++
Sbjct: 106 NVCSLSFQDGVVISGSWDKTAKVW-----KEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDK-NFVGLATDGDYVACGSENNSLYIYYKGLSKH 109
AS D +KLW +K +++F G ND + + DG +++C ++ GL K
Sbjct: 161 ASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISCSND---------GLIKL 209
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYK 159
+ + D +R+ + GH + + L +GD V+CG E+ ++ I+ K
Sbjct: 210 VDXHTGDVLRT-----YEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSK 253
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 16/159 (10%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIV--SASTDSQLKL 59
+ C L G + +DL + Y ++ + V S +D + +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVR 119
W+++ +R F GH + + + ++ DG ++ GL + ++ R
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDG-----------TKLWTGGLDNTVRSWDLREGR 216
Query: 120 SMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYY 158
+ + F I +G G+++A G E++++ + +
Sbjct: 217 QLQQHDFTSQIFS---LGYCPTGEWLAVGMESSNVEVLH 252
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALA---------VFKGHRKAVSYVKFLNKED--IVSAST 53
H++ S HC+ R K L + +GHR+ + V + + D + +AS
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 54 DSQLKLWNINKPN-CLRSFVGHINDKN 79
DS++KLW++ + + CL + H K+
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKS 234
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 25/122 (20%)
Query: 5 HLAFGSADHCVHYYD---------LRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTD 54
++A GS D V +D L + E+ GH+ +V V F + + +VS S D
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENES---GTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 55 SQLKLWNINKPN------------CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+KLWN+ N C +++GH + V + +Y+ GS++ + +
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 103 YK 104
K
Sbjct: 338 DK 339
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 10 SADHCVHYYDLRNTKEALAVF---KGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
S DH + ++++ T +A+F +GHR V + L E I+S D LKLW IN
Sbjct: 130 SKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 10 SADHCVHYYDLRNTKEALAVF---KGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
S DH + ++++ T +A+F +GHR V + L E I+S D LKLW IN
Sbjct: 171 SKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 10 SADHCVHYYDLRNTKEALAVF---KGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
S DH + ++++ T +A+F +GHR V + L E I+S D LKLW IN
Sbjct: 135 SKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 10 SADHCVHYYDLRNTKEALAVF---KGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
S DH + ++++ T +A+F +GHR V + L E I+S D LKLW IN
Sbjct: 134 SKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 10 SADHCVHYYDLRNTKEALAVF---KGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
S DH + ++++ T +A+F +GHR V + L E I+S D LKLW IN
Sbjct: 134 SKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 32 GHRKAVSYVKFLNKEDIVSA-STDSQLKLWNINKP-------NCLRSFVGHINDKNFVGL 83
H+KA+ V + +++A S DS + +W + + L GH N+ V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 84 ATDGDYVACGSENNSLYIY 102
+ DG Y+A S + S++I+
Sbjct: 116 SNDGYYLATCSRDKSVWIW 134
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 882 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 941
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 942 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 981
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 892 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 951
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 952 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 991
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 886 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 945
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 946 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 985
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 901 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 960
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 961 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 1000
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 901 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 960
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 961 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 1000
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 901 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 960
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 961 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 1000
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 901 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 960
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 961 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 1000
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ LR+ H N+ + L T GD++ G S L + YK + +
Sbjct: 900 ASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 959
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 960 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 999
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 19 DLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKLWNINKPNCLRS 70
+ N ++A F H +V VKF K+D + S + ++ +W++NK C S
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK--CTES 149
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 30 FKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
F GH +++ ++ + ++S S D ++LW++ + L
Sbjct: 285 FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 24 KEALAVFKGHRKAVSYVKFLNKEDIV-SASTDSQLKLWNINKPNCLRSFVGH 74
K GH +S ++F + ++ SAS D L++W+ N F GH
Sbjct: 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ +R+ H N+ + L T GD++ G S L + YK + +
Sbjct: 882 ASINSTVRLYEWTTEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 941
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 942 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 981
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ +R+ H N+ + L T GD++ G S L + YK + +
Sbjct: 885 ASINSTVRLYEWTTEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 944
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 945 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 984
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 51 ASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNS-LYIYYKGLSKH 109
AS +S ++L+ +R+ H N+ + L T GD++ G S L + YK + +
Sbjct: 900 ASINSTVRLYEWTTEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 959
Query: 110 MHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSEN 151
D + + S V ++D NF+G + C ++
Sbjct: 960 FEEIARDFNPNWM--SAVEILDDDNFLGAENAFNLFVCQKDS 999
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLW 60
NS L+ GS +H++D+R + +A GH + V +++ + + S D+ + +W
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,809,942
Number of Sequences: 62578
Number of extensions: 277400
Number of successful extensions: 1126
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 296
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)