RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10662
(221 letters)
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 138 bits (349), Expect = 1e-37
Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 51/208 (24%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKP 65
LAFGSADH V+YYDLRN K L GH K VSYV+F++ +VS+STD+ LKLW
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLW----- 687
Query: 66 NCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESS 125
D G L+ S
Sbjct: 688 --------------------DLSMSISGINETPLH------------------------S 703
Query: 126 FVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDD 185
F+GH N KNFVGL+ Y+A GSE N +++Y+K + +Y+F T+ + + DD
Sbjct: 704 FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE--VDD 761
Query: 186 TNEFVSAVCWRQLSRVLVAANSQGIIKI 213
++F+S+VCWR S LVAANS G IKI
Sbjct: 762 ASQFISSVCWRGQSSTLVAANSTGNIKI 789
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 80.5 bits (199), Expect = 4e-18
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 30/211 (14%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNIN 63
LA GS D + +DL T E L KGH V V + + S S+D ++LW++
Sbjct: 23 LLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81
Query: 64 KPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLE 123
C+R+ GH + + V + DG ++ S + ++ + +D
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV-------------WDVETGKCL 128
Query: 124 SSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNE 183
++ GH + N V + DG +VA S++ ++ ++ K + T
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT----------- 177
Query: 184 DDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
V++V + L++++S G IK++
Sbjct: 178 ----GEVNSVAFSPDGEKLLSSSSDGTIKLW 204
Score = 78.1 bits (193), Expect = 2e-17
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNINK 64
+A S D + +DLR K +A GH V+ V F + E ++S+S+D +KLW+++
Sbjct: 150 VASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
CL + GH N N V + DG +A GSE+ ++ + + T +
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV-----------WDLRTGECV--Q 255
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
+ GH N + + DG +A GS + ++ I+
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 77.4 bits (191), Expect = 5e-17
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 30/210 (14%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIV-SASTDSQLKLWNINK 64
LA GS+D + +DL T E + GH VS V F I+ S+S D +K+W++
Sbjct: 66 LASGSSDKTIRLWDL-ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 65 PNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLES 124
CL + GH + N V + DG +VA S++ ++ ++ D +
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW-------------DLRTGKCVA 171
Query: 125 SFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNED 184
+ GH + N V + DG+ + S + ++ ++ K + R
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH------------- 218
Query: 185 DTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
V++V + +L + + G I+++
Sbjct: 219 --ENGVNSVAFSPDGYLLASGSEDGTIRVW 246
Score = 62.4 bits (152), Expect = 1e-11
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLW 60
+ L S+D + +DL T + L +GH V+ V F + + S S D +++W
Sbjct: 188 DGEKLLSSSSDGTIKLWDLS-TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246
Query: 61 NINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
++ C+++ GH N + + DG +A GS + ++ I+
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Score = 36.5 bits (85), Expect = 0.007
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 6 LAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKE-DIVSASTDSQLKLWN 61
LA GS D + +DLR T E + GH +V+ + + + S S D +++W+
Sbjct: 234 LASGSEDGTIRVWDLR-TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 36.2 bits (84), Expect = 0.008
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 28/148 (18%)
Query: 67 CLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSF 126
R+ GH V + DG +A GS + ++ ++ D L +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW-------------DLETGELLRTL 47
Query: 127 VGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDT 186
GH V + DG Y+A GS + ++ ++ L +
Sbjct: 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLW---------DLETGECVRTLTGHTSY--- 95
Query: 187 NEFVSAVCWRQLSRVLVAANSQGIIKIY 214
VS+V + R+L +++ IK++
Sbjct: 96 ---VSSVAFSPDGRILSSSSRDKTIKVW 120
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 60.1 bits (144), Expect = 1e-10
Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 30/216 (13%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED--IVSASTDSQLKL 59
NS LA S D V +DL + + +GH ++V+ + F +S D +KL
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGD-YVACGSENNSLYIYYKGLSKHMHAYRFDTV 118
W++ L + GH + + + + DG +A GS + ++ ++ K +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR------- 235
Query: 119 RSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLE 178
S+ GH + + DG +A GS + ++ ++ +RS
Sbjct: 236 -----STLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLW--------------DLRSSSS 275
Query: 179 RDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
R + V +V + ++L + +S G ++++
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Score = 53.6 bits (127), Expect = 2e-08
Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 13/173 (7%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
+A GS+D + +DL K + GH +V + + S S+D ++LW+
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD 269
Query: 62 INKP-NCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRS 120
+ + LR+ GH + V + DG +A GS + ++ + + +T +
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL-----------WDLETGKL 318
Query: 121 MLESSFVGHINDKNFVGLATDGDYVACG-SENNSLYIYYKGLSKHMHAYRFDT 172
+ + GH + + + DG + G S++ ++ ++ K + +
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371
Score = 45.5 bits (106), Expect = 1e-05
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 9 GSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCL 68
GS D + +DL T + L +GH +S + + S STD ++LW+++ + L
Sbjct: 347 GSDDGTIRLWDL-RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 69 RSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
R+ GH + + + DG +A GS +N++ ++
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Score = 31.2 bits (69), Expect = 0.46
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLW 60
+ ++ GS D V +DL +T L GH V+ + F + S S+D+ ++LW
Sbjct: 381 DGRVVSSGSTDGTVRLWDL-STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
Query: 61 NINKPNCLRSF 71
++ SF
Sbjct: 440 DLKTSLKSVSF 450
Score = 27.4 bits (59), Expect = 6.3
Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 29/190 (15%)
Query: 30 FKGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLA---T 85
+GH +++ + F + E ++S S+D +KLW+++ L + ++D + LA
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 86 DGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYV 145
DG+ + S + + LS R + GH + + DG +
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR----------TLEGHSESVTSLAFSPDGKLL 170
Query: 146 ACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVA- 204
A GS + + + + + VS++ + +L+A
Sbjct: 171 ASGSSLDGTIKLWDLRTG--------------KPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 205 ANSQGIIKIY 214
+S G I+++
Sbjct: 217 GSSDGTIRLW 226
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 34.2 bits (79), Expect = 0.003
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 23 TKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWN 61
+ E L KGH V+ V F + S S D +KLW+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 27.7 bits (62), Expect = 0.69
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 64 KPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
L++ GH V + DG Y+A GS++ ++ ++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 32.7 bits (75), Expect = 0.008
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 27 LAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWN 61
L KGH V+ V F + + S S D +++W+
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 27.7 bits (62), Expect = 0.61
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 66 NCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
LR+ GH V + DG+ +A GS++ ++ ++
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 34.5 bits (79), Expect = 0.034
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 36/177 (20%)
Query: 2 NSCH---LAFGSADHCVHYYDLRNT-------KEALAVFKGHRKAVSYVKF--LNKEDIV 49
N C LA GS D + +++ + K+ + KGH+K +S + + +N +
Sbjct: 83 NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMC 142
Query: 50 SASTDSQLKLWNINKPNCLRSFVGHIN-DKNFVGLATD-GDYVACGSENNSLYIYYKGLS 107
S+ DS + +W+I N R+F IN K L + + G+
Sbjct: 143 SSGFDSFVNIWDIE--NEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG---------- 188
Query: 108 KHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKH 164
KHMH D + + SSF H KN + DG G ++N YI G SK+
Sbjct: 189 KHMHI--IDPRKQEIASSFHIHDGGKNTKNIWIDG----LGGDDN--YILSTGFSKN 237
>gnl|CDD|214355 CHL00076, chlB, photochlorophyllide reductase subunit B.
Length = 513
Score = 30.0 bits (68), Expect = 0.90
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 6/23 (26%)
Query: 165 MHA-----YRFDTVRSMLERDRN 182
MHA Y F+ +RSMLER+R+
Sbjct: 30 MHAPLGDDY-FNVMRSMLERERD 51
>gnl|CDD|240970 cd12526, RRM1_EAR1_like, RNA recognition motif 1 in terminal
EAR1-like proteins. This subgroup corresponds to the
RRM1 of terminal EAR1-like proteins, including terminal
EAR1-like protein 1 and 2 (TEL1 and TEL2) found in land
plants. They may play a role in the regulation of leaf
initiation. The terminal EAR1-like proteins are
putative RNA-binding proteins carrying three RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains),
and TEL characteristic motifs that allow sequence and
putative functional discrimination between the terminal
EAR1-like proteins and Mei2-like proteins. .
Length = 71
Score = 28.1 bits (63), Expect = 0.94
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 15 VHYYDLRNTKEALAVFKGH 33
VH+YDLR+ ++AL +
Sbjct: 43 VHFYDLRHAEDALRDIRAQ 61
>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
Members of this protein were designated YjeQ and are now
designated RsgA (ribosome small subunit-dependent GTPase
A). The strongest motif in the alignment of these
proteins is GXSGVGKS[ST], a classic P-loop for
nucleotide binding. This protein has been shown to
cleave GTP and remain bound to GDP. A role as a
regulator of translation has been suggested. The Aquifex
aeolicus ortholog is split into consecutive open reading
frames. Consequently, this model was build in fragment
mode (-f option) [Protein synthesis, Translation
factors].
Length = 245
Score = 27.8 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 195 WRQLSRVLVAANSQGIIKIYVI 216
QL R LV A +Q I I V+
Sbjct: 53 LNQLDRFLVVAEAQNIEPIIVL 74
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 28.3 bits (63), Expect = 4.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 22 NTKEALAVFKGHRKAVSYVKF--LNKEDIVSASTDSQLKLWNINK 64
N + + +GH K V V F + SA D + +W++ +
Sbjct: 113 NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157
>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction
only].
Length = 187
Score = 27.4 bits (61), Expect = 4.3
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 22 NTKEALAV--FKGHRKAVSYVKFLNKEDIVSASTDSQ----LKLWNINKPNCLRSFVGHI 75
T A + F R + V +NK+D+ A + LKL ++ P
Sbjct: 105 ITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVP---------- 154
Query: 76 NDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
AT+G+ + L ++
Sbjct: 155 ---VIEIDATEGEGARDQLDVLLLKDLLGSANE 184
>gnl|CDD|238939 cd01981, Pchlide_reductase_B, Pchlide_reductase_B: B protein of the
NB protein complex of Protochlorophyllide
(Pchlide)_reductase. Pchlide reductase catalyzes the
reductive formation of chlorophyllide (chlide) from
protochlorophyllide (pchlide) during biosynthesis of
chlorophylls and bacteriochlorophylls. This group
contains both the light-independent Pchlide reductase
(DPOR) and light-dependent Pchlide reductase (LPOR).
Angiosperms contain only LPOR, cyanobacteria, algae and
gymnosperms contain both DPOR and LPOR, primitive
anoxygenic photosynthetic bacteria contain only DPOR. NB
is structurally similar to the FeMo protein of
nitrogenase, forming an N2B2 heterotetramer. N and B are
homologous to the FeMo alpha and beta subunits
respectively. Also in common with nitrogenase in vitro
DPOR activity requires ATP hydrolysis and dithoionite or
ferredoxin as electron donor. The NB protein complex may
serve as a catalytic site for Pchlide reduction similar
to MoFe for nitrogen reduction.
Length = 430
Score = 28.1 bits (63), Expect = 4.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 6/30 (20%)
Query: 158 YKGLSKHMHA-----YRFDTVRSMLERDRN 182
+K + MHA Y F+ +RSMLER+R+
Sbjct: 23 FKNVHAVMHAPLGDDY-FNVMRSMLERERD 51
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 27.8 bits (62), Expect = 5.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALA 28
MN C F DH H L N +EA
Sbjct: 64 MNICRFNFSHGDHESHKKTLNNVREAAK 91
>gnl|CDD|222769 PHA00003, B, internal scaffolding protein.
Length = 120
Score = 26.8 bits (59), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 169 RFDTVRSMLERDRNEDDTNEFVSAVCWRQ 197
R D V+ LE +R + E A+C R+
Sbjct: 49 RRDPVQQDLEAERQKRADIEAGKAICARR 77
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 262
Score = 26.9 bits (60), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 76 NDKNFVGLATDGDYVACGSENNSLYIYYK--GLSKHMHAYRFDTVRS 120
D FV + Y SE N+ +YK + + +Y FD +R+
Sbjct: 51 KDNVFVTVVGQIQYRV--SEENATDAFYKLGNPEEQIQSYVFDVLRA 95
Score = 26.9 bits (60), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 131 NDKNFVGLATDGDYVACGSENNSLYIYYK--GLSKHMHAYRFDTVRS 175
D FV + Y SE N+ +YK + + +Y FD +R+
Sbjct: 51 KDNVFVTVVGQIQYRV--SEENATDAFYKLGNPEEQIQSYVFDVLRA 95
>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.
Length = 758
Score = 26.9 bits (60), Expect = 9.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 113 YRFDTVRSM------LESSFVGHINDKNFVGLATDGDYV 145
+RFD V SM L+ +F G+ N+ + G+ATD D V
Sbjct: 387 FRFDGVTSMLYHHHGLQMAFTGNYNE--YFGMATDVDAV 423
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,881,296
Number of extensions: 971600
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 40
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)