RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10662
(221 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 64.0 bits (154), Expect = 9e-13
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLW 60
L GS D + +D+ T L GH V V F + I+S + D L++W
Sbjct: 216 PGPFLLSGSRDKTIKMWDVS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 61 NINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+ C+++ H + + YV GS + ++ ++
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 58.6 bits (140), Expect = 6e-11
Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 24/221 (10%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLW 60
N H+ S D + ++++ T + F GHR+ V V+ I S S D +++W
Sbjct: 112 NGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 61 NINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHA-------Y 113
+ C H + + A + Y + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 114 RFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+D M + VGH N V + G ++ +++ +L ++ + M
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE- 289
Query: 174 RSMLERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
FV+++ + + + +V + +K++
Sbjct: 290 --------------HFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 50.1 bits (118), Expect = 5e-08
Identities = 36/260 (13%), Positives = 77/260 (29%), Gaps = 66/260 (25%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--------------------- 43
+ S D + +D T + KGH +V + F
Sbjct: 31 VMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89
Query: 44 ----------------------NKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFV 81
N + IVSAS D +K+W + C+++F GH V
Sbjct: 90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149
Query: 82 GLATDGDYVACGSENNSLYIYYKG-------LSKHMHAYRFDTVRSMLESSFVGHINDKN 134
DG +A S + ++ ++ L +H H + S +
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 135 FVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVC 194
G ++ GS + ++ ++ + + +V V
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---------------GHDNWVRGVL 254
Query: 195 WRQLSRVLVAANSQGIIKIY 214
+ + +++ ++++
Sbjct: 255 FHSGGKFILSCADDKTLRVW 274
Score = 48.2 bits (113), Expect = 2e-07
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 4/150 (2%)
Query: 29 VFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
GHR V+ V F +VSAS D+ +K+W+ + R+ GH + V +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH---TDSVQDISFD 68
Query: 88 DYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVAC 147
+ ++ + R SS N + V + D
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 148 GSENNSLYIYYKGLSKHMHAYRFDTVRSML 177
+ + G + + R + +++
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLI 158
Score = 28.9 bits (63), Expect = 0.45
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 58 KLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
K W I +P + GH + V + SE+ ++ ++
Sbjct: 1 KEW-IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 62.1 bits (149), Expect = 5e-12
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKL 59
++ G+ D +D+R F GH ++ + F N + S D+ +L
Sbjct: 194 PDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 60 WNINKPNCLRSFVGHINDKNFVGLA--TDGDYVACGSENNSLYIYYKGLSKHMHAYRFDT 117
+++ L ++ ++ G + G ++ + ++ D
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-------------DA 299
Query: 118 VRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
+++ GH N + +G+ DG VA GS ++ L I+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 54.7 bits (130), Expect = 1e-09
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 26/166 (15%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
VS + D+ KLW++ + C ++F GH +D N + +G+ A GS++ + ++ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 109 HMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAY 168
+ Y D I V + G + G ++ + ++ +
Sbjct: 260 ELMTYSHDN-----------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 169 RFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
VS + + + +KI+
Sbjct: 309 AGHD---------------NRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 47.8 bits (112), Expect = 3e-07
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLW 60
+ L G D + +D + V GH VS + + + + S DS LK+W
Sbjct: 281 SGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 61 N 61
N
Sbjct: 340 N 340
Score = 30.5 bits (67), Expect = 0.15
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 29 VFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
+GH + + + +VSAS D +L +W+ N + + + A G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 88 DYVACGSENNSLYIYY 103
+YVACG +N IY
Sbjct: 110 NYVACGGLDNICSIYN 125
Score = 28.2 bits (61), Expect = 0.76
Identities = 11/74 (14%), Positives = 25/74 (33%)
Query: 44 NKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYY 103
D + + + + R+ GH+ + TD + S++ L I+
Sbjct: 24 ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Query: 104 KGLSKHMHAYRFDT 117
+ +HA +
Sbjct: 84 SYTTNKVHAIPLRS 97
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 53.8 bits (127), Expect = 2e-09
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLW 60
+ +A GS D + Y ++ + + H+ V+ + + +VS+ D+ +K W
Sbjct: 225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 284
Query: 61 NI 62
N+
Sbjct: 285 NV 286
Score = 35.7 bits (80), Expect = 0.003
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 23 TKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVG 82
E L GH K ++ + ++S S D ++ W+ + H N +
Sbjct: 2 HDEVLKTISGHNKGITALTV---NPLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLD 53
Query: 83 LATDGDYVACGSENNSLYIYYKGLSKHMHAYRF 115
+ +Y + ++
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVA 86
Score = 31.5 bits (69), Expect = 0.064
Identities = 8/55 (14%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 44 NKEDIVSASTDSQLKLWNINKP-NCLRSFVGHINDKNFVGLATDGDYVACGSENN 97
++ + + S D+ + ++++ +P +++ H + N + T V+ G++
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADAC 280
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 49.8 bits (117), Expect = 8e-08
Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 17/221 (7%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLW 60
+ L GS D V +DLR + +L + V + + I + S D +++W
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
Query: 61 NINKPNC-------LRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAY 113
+ S GH + V DG V GS + S+ ++ + +
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292
Query: 114 RFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTV 173
+ + +++GH + V + +Y+ GS++ + + K +
Sbjct: 293 KTPNSGTCE-VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL------- 344
Query: 174 RSMLERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
ML+ RN + + V + +I+
Sbjct: 345 --MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
Score = 48.6 bits (114), Expect = 2e-07
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-------IVSASTD 54
N ++ GS D V ++D + + L + +GHR +V V N + S D
Sbjct: 319 NDEYILSGSKDRGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 55 SQLKLWNINK 64
+ ++W K
Sbjct: 378 CKARIWKYKK 387
Score = 32.5 bits (72), Expect = 0.031
Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 55/244 (22%)
Query: 21 RNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDK-- 78
R L H V VKF N + ++ + +++ ++ + +
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108
Query: 79 ----------------NFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSML 122
V + DG ++A G+E+ + I+ K + +
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 123 ESSFVGHINDKNFVGLAT-----------------------------DGDYVACGSENNS 153
F + G T DG Y+A GS + +
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 154 LYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKI 213
+ ++ + + +D V +V + + + +V+ + +K+
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDS--------VYSVVFTRDGQSVVSGSLDRSVKL 280
Query: 214 YVIP 217
+ +
Sbjct: 281 WNLQ 284
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 49.0 bits (115), Expect = 1e-07
Identities = 27/215 (12%), Positives = 74/215 (34%), Gaps = 26/215 (12%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLW 60
+ + G+ D V +D L +GH V ++F + +VS S D+ +++W
Sbjct: 145 YDGRRVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVW 202
Query: 61 NINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRS 120
++ NC+ + GH G+ + + G+ ++++ I+ + + +
Sbjct: 203 DVETGNCIHTLTGH--QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP---- 256
Query: 121 MLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERD 180
+ + L + ++V S++ ++ ++ + +
Sbjct: 257 --------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-------- 300
Query: 181 RNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIYV 215
+ V + V + G + +
Sbjct: 301 --SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333
Score = 48.3 bits (113), Expect = 2e-07
Identities = 26/101 (25%), Positives = 36/101 (35%)
Query: 21 RNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNF 80
R ++ V KGH V IVS S D+ LK+W+ CLR+ VGH
Sbjct: 3 RGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62
Query: 81 VGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
+ + ++ G H TVR M
Sbjct: 63 SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103
Score = 31.3 bits (69), Expect = 0.088
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 14/117 (11%)
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVR 119
W + + GH +D L G+ + GS++N+L ++ V
Sbjct: 1 WRRGELKSPKVLKGH-DDHVITCLQFCGNRIVSGSDDNTLKVW-------------SAVT 46
Query: 120 SMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 176
+ VGH + + ++ G H TVR M
Sbjct: 47 GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103
Score = 29.8 bits (65), Expect = 0.24
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF 42
+ GS D+ + + T + L GH V +
Sbjct: 29 RIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQM 65
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 44.8 bits (104), Expect = 3e-06
Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 12/217 (5%)
Query: 5 HLAFGSADHCVHYYDLRNTK-EALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNI 62
+A +H VH Y+ K + K H V+ V + + IV+ TD +W +
Sbjct: 21 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80
Query: 63 NKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSML 122
+ V ++ + + + S I + + ++ +
Sbjct: 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 140
Query: 123 ESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY---YKGLSKHMHAYRFDTVRSMLER 179
S+ + N +A GS + I+ K + + + + E
Sbjct: 141 RSTVLSLDWHPNS-------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 193
Query: 180 DRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIYVI 216
+ +V VC+ + + + +
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Score = 34.4 bits (77), Expect = 0.008
Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 11/91 (12%)
Query: 86 DGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYV 145
D +A N+ ++IY + + H V A D + +
Sbjct: 18 DRTQIAICPNNHEVHIY-----------EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 146 ACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 176
+ + Y++ +
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRA 97
Score = 30.6 bits (67), Expect = 0.13
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 3 SCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-----NKEDIVSASTDSQL 57
+ F + D + + H+ +VS + L + D +
Sbjct: 296 TARERFQNLDKKASSEG--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353
Query: 58 KLWNIN 63
+W++
Sbjct: 354 SIWDVR 359
Score = 26.4 bits (56), Expect = 3.1
Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 13/158 (8%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLW 60
N +A+ S D V D A + V F+ + +V+A D L+
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269
Query: 61 NINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRS 120
+ SF G ++ ++ L K + +
Sbjct: 270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARER-----------FQNLDKKASSEGSAAAGA 318
Query: 121 MLESSFVGHINDKNFV-GLATDGDYVACGSENNSLYIY 157
L+S ++ + + G + + I+
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 44.5 bits (103), Expect = 4e-06
Identities = 11/94 (11%), Positives = 28/94 (29%)
Query: 28 AVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDG 87
+GH +V +++ + D +++++ L GH + A G
Sbjct: 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 88 DYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSM 121
V+ ++ K ++
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 99
Score = 42.6 bits (98), Expect = 2e-05
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
S ++ +++ + Y+LR+ K A + V F K + + D Q L
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 351
Query: 62 IN 63
++
Sbjct: 352 LD 353
Score = 39.1 bits (89), Expect = 3e-04
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINK 64
++ G+ D + YD K+ L GH V +K+ + +VS STD +++W+I K
Sbjct: 25 YVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 83
Query: 65 PNCLRSFVGHI--NDKNFVGLATDGDYVACGSENNSLYIY 102
C F GH + + Y+ GS +N+L+++
Sbjct: 84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
Score = 32.6 bits (72), Expect = 0.031
Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLW 60
+ SA + H + F ++I+ + +++Q ++
Sbjct: 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308
Query: 61 NINKPNCLRS-FVGHINDKNFVGLATDGDYVACGSENNSLYI 101
N+ + + + + V VA ++ ++
Sbjct: 309 NLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFL 349
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 44.1 bits (102), Expect = 4e-06
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFV-GLATDGDYVACGSENNSLYIY 102
I SAS D +K+WN+ ++ ++ G+ + S N +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 38.0 bits (86), Expect = 5e-04
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL--NKEDIVSASTDSQLK 58
+ +A SAD + +++ T + + + K+ +VS S + +
Sbjct: 248 PDGTKIASASADKTIKIWNVA-TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Query: 59 LWNI 62
N
Sbjct: 307 FVNP 310
Score = 35.3 bits (79), Expect = 0.004
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLS 107
I + S + + + H + + G Y A G + ++ I+ +
Sbjct: 32 IQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90
Query: 108 KHMHAYRFD 116
H+
Sbjct: 91 THILKTTIP 99
Score = 31.4 bits (69), Expect = 0.074
Identities = 5/64 (7%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFL-NKEDIVSASTDSQLKLWNIN 63
+ + + V+ + + + ++ H + K + S +++W+
Sbjct: 31 KIQYCN-GTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88
Query: 64 KPNC 67
+
Sbjct: 89 QTTH 92
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 43.8 bits (101), Expect = 6e-06
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLA---TDGDYVACGSENNSLYIY 102
+ D+ +++W++ C++ + + T + S + +L Y
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 39.9 bits (91), Expect = 1e-04
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSY----VKFLNKEDIVSASTDSQ 56
++S A AD + +D+ T + + + ++ + V I+S S D
Sbjct: 261 LDSQKFATVGADATIRVWDVT-TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319
Query: 57 LKLWNI 62
L + +
Sbjct: 320 LNFYEL 325
Score = 26.0 bits (55), Expect = 4.0
Identities = 17/172 (9%), Positives = 45/172 (26%), Gaps = 12/172 (6%)
Query: 33 HRKAVSYVKFLNKED-IVSASTDS-QLKLWNI--NKPNCLRSFVGHINDKNFV---GLAT 85
R +++ + + I S ++ + +K + F GH +
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 86 DGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYV 145
Y+ G E+ + ++ K + +V ++S F + + +G +
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESN-----SVEVNVKSEFQVLAGPISDISWDFEGRRL 130
Query: 146 ACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQ 197
E + + + + V
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 43.3 bits (100), Expect = 9e-06
Identities = 24/204 (11%), Positives = 53/204 (25%), Gaps = 20/204 (9%)
Query: 29 VFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGHIND----------- 77
K H + V N VS S D LK+W+ + +
Sbjct: 9 AGKAHDADIFSVSACNSF-TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 78 --KNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNF 135
+ A + VA S + L Y F+ + + +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 136 V--GLATDGDYVACGSENNSLYIYY---KGLSKHMHAYRFDTVRSMLERDRNEDDTNEFV 190
+ + YI+ + + + + ++F
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 191 SAVCWRQLSRVLVAANSQGIIKIY 214
++V + ++ + G ++I
Sbjct: 188 TSVDISE-RGLIATGFNNGTVQIS 210
Score = 34.1 bits (76), Expect = 0.010
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 13 HCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCLRSF 71
++ +A H V + F + + + SA D +L+ W++ + +
Sbjct: 268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 327
Query: 72 VGHIND----KNFVGLATDGDYVACGS 94
H +D ++ + + GD +A
Sbjct: 328 NMHCDDIEIEEDILAVDEHGDSLAEPG 354
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 42.9 bits (99), Expect = 1e-05
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 33 HRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVA 91
H V +KF VS D+ L W + + ++ D Y+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322
Query: 92 CGSENNSLYIY 102
GS + +Y
Sbjct: 323 TGSGDKKATVY 333
Score = 37.1 bits (84), Expect = 0.001
Identities = 6/62 (9%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKED-IVSASTDSQLKLW 60
D+ ++ + +V + IV+ S D + ++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 61 NI 62
+
Sbjct: 334 EV 335
Score = 37.1 bits (84), Expect = 0.001
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 32 GHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLR-----SFVGHINDKNFVGLATD 86
H + V V N V +K+W+I+ P + N L D
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 87 GDYVACGSENNSLYIYYKGLSKHMHAYRFD 116
G + G E ++L I+
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELT 138
Score = 35.9 bits (81), Expect = 0.002
Identities = 11/157 (7%), Positives = 35/157 (22%), Gaps = 14/157 (8%)
Query: 1 MNSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLW 60
+++ + + + + + + ++ +S
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 61 NINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDTVRS 120
H + + A G + ++N L +
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW--------------RTPY 296
Query: 121 MLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 157
+ ++ D Y+ GS + +Y
Sbjct: 297 GASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 28.2 bits (61), Expect = 0.84
Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%)
Query: 49 VSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK 108
V D+ + + + H V ++ +V G + ++
Sbjct: 26 VPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVW------ 77
Query: 109 HMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAY 168
+ + + N L DG + G E ++L I+
Sbjct: 78 --DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 169 RFD 171
Sbjct: 136 ELT 138
Score = 27.1 bits (58), Expect = 1.9
Identities = 16/232 (6%), Positives = 45/232 (19%), Gaps = 20/232 (8%)
Query: 2 NSCHLAFGSADHCVHYYDLRN----TKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQL 57
+ H+ G CV +D+ + + + + K L + ++
Sbjct: 62 PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 58 KLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAYRFDT 117
R + S + R
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 118 VRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSK-------------- 163
+ S + D + + S+
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240
Query: 164 -HMHAYRFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
M + + + V ++ + + V+ ++ +
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 26.3 bits (56), Expect = 3.0
Identities = 9/106 (8%), Positives = 24/106 (22%), Gaps = 16/106 (15%)
Query: 109 HMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLSKHMHAY 168
V + H + + A G + ++N L + +
Sbjct: 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303
Query: 169 RFDTVRSMLERDRNEDDTNEFVSAVCWRQLSRVLVAANSQGIIKIY 214
+ + V + + +V + +Y
Sbjct: 304 K----------------ESSSVLSCDISVDDKYIVTGSGDKKATVY 333
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 41.9 bits (96), Expect = 3e-05
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 4 CHLAFGSADHCVHYYDLRNTKEALAVFK--GHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
LA GS D+ V +++ + + K +V+ V +LN+ IVSA DS +K WN
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Query: 62 I 62
+
Sbjct: 297 V 297
Score = 38.0 bits (86), Expect = 5e-04
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 27 LAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNINKPNCLRSFVGH 74
V GH KA++ + + + + SA + + W+I+ R F
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53
Score = 35.0 bits (78), Expect = 0.004
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLA--TDGDYVACGSENNSLYIY 102
+ + S D+ + +WN+NKP+ + + + V + + +++++ +
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Score = 34.2 bits (76), Expect = 0.009
Identities = 11/66 (16%), Positives = 24/66 (36%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
+ L A+ ++ +D+ H ++ +K +K D+ + S D LK+
Sbjct: 23 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 82
Query: 62 INKPNC 67
Sbjct: 83 AGGSGV 88
Score = 25.3 bits (53), Expect = 6.5
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 66 NCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIY 102
+ + GH + + DG + + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 40.2 bits (92), Expect = 9e-05
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 RNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWNINKPNCLRSFVGH 74
R++ + + K V +++ + + IVS D+ +K+W+ N C R GH
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGH 54
Score = 37.1 bits (84), Expect = 8e-04
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 1 MNSCHLAFGSADHCVHYYDLRN--------TKEALAVFKGHRKAVSYVKFLNKEDIVSAS 52
++ + G+ D + +DL L H V ++F ++ IVS+S
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSS 284
Query: 53 TDSQLKLWN 61
D + +W+
Sbjct: 285 HDDTILIWD 293
Score = 30.2 bits (66), Expect = 0.17
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF 42
+ + G D+ + +D NT E + GH +V +++
Sbjct: 24 DDQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY 63
Score = 27.9 bits (60), Expect = 0.86
Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 36/144 (25%)
Query: 48 IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGLS 107
IVSAS D +K+WN + +R+ GH + V GS +N++ ++
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECG 208
Query: 108 KHMHAYR---------------------------FDTVRSMLESSFVGHINDKNFVG--- 137
+ +D V ++ + G + + V
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268
Query: 138 ----LATDGDYVACGSENNSLYIY 157
L D + S ++++ I+
Sbjct: 269 RVFRLQFDEFQIVSSSHDDTILIW 292
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 39.1 bits (89), Expect = 2e-04
Identities = 9/92 (9%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 29 VFKGHRKAVSYVKFLNKED-IVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVG----L 83
+ + + +S +K + + ++ S D L ++ + + + K+ + +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 84 ATDGDYVACGSENNSLYIYYKGLSKHMHAYRF 115
+ G+ + S A
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97
Score = 35.2 bits (79), Expect = 0.004
Identities = 9/73 (12%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 31 KGHRKAVSYVKFLNKEDIVSA-STDSQLKLWNINKPNCLRSFVGHINDKNFVGLATDGDY 89
V+ ++F + + +D + WN+ +++F N+ + V +A +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNI 306
Query: 90 VACGSENNSLYIY 102
+ + +++
Sbjct: 307 LCLATSDDTFKTN 319
Score = 29.8 bits (65), Expect = 0.26
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKLWN 61
L +D + ++L T++ + F + + + A++D K
Sbjct: 262 RHKFLYTAGSDGIISCWNL-QTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320
Query: 62 I 62
Sbjct: 321 A 321
Score = 27.9 bits (60), Expect = 0.92
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 2 NSCHLAFGSADHCVHYYDLRNTKE--ALAVFKGHRKAVSYVKFLNKEDIVSASTDSQLKL 59
+ L S D + Y + L ++ + F++ D+ Q ++
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81
Query: 60 WNINKPNC 67
++
Sbjct: 82 LKVDLIGS 89
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 32.5 bits (72), Expect = 0.029
Identities = 7/67 (10%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 5 HLAFGSADHCVHYYDLRNTKEALAVFKGHRKAVSYVKF-LNKEDIVSASTDSQLKLWNIN 63
+ + YD++ K + ++ ++ +++ ++ D ++ + +
Sbjct: 290 YYQGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Query: 64 KPNCLRS 70
KP R+
Sbjct: 345 KPEDERT 351
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 32.1 bits (71), Expect = 0.042
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 45 KEDIVSASTDSQLKLWNINKPNCLRSFVGHINDKNFVGLA--TDGDYV-ACGSENNSLYI 101
++ I++ + +L + + K + + G A +++ SL
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 102 YYKGLSKHMHAYRFDTVRSMLESSFVGHINDKNFVGLATDGDYVACGSENNSLYIYYKGL 161
+T+ + S+ + L+ DG +A L + + +
Sbjct: 61 I--------DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112
Query: 162 SKHMHAYR 169
A
Sbjct: 113 QPTRVALY 120
>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 272
Score = 25.7 bits (56), Expect = 5.2
Identities = 4/34 (11%), Positives = 8/34 (23%)
Query: 60 WNINKPNCLRSFVGHINDKNFVGLATDGDYVACG 93
+ + + G G+ A G
Sbjct: 82 TTPLPDKVEGQWGAAVPADEWSGATALGEVAAVG 115
Score = 25.3 bits (55), Expect = 5.7
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 14/65 (21%)
Query: 98 SLYIYYKGLSKHMHAY--------------RFDTVRSMLESSFVGHINDKNFVGLATDGD 143
Y Y L ++ A+ + +E + + + G G+
Sbjct: 51 MTYFYTSDLGQYDDAFWATANYNRLPGITVDTTPLPDKVEGQWGAAVPADEWSGATALGE 110
Query: 144 YVACG 148
A G
Sbjct: 111 VAAVG 115
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816
{Porphyromonas gingivalis [TaxId: 837]}
Length = 149
Score = 24.7 bits (54), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 100 YIYYKGLSKHMHAYRFDTVRSMLESSF 126
+ Y+GL H R+DT+ S+LE F
Sbjct: 63 EVLYQGL----HFSRYDTLVSVLEREF 85
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency
virus [TaxId: 11723]}
Length = 114
Score = 24.2 bits (53), Expect = 7.4
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 13 HCVHY-YDLRNTKEALAVFKGHRKA 36
C+H +++T+EA + + H
Sbjct: 81 WCIHAEEKVKHTEEAKQIVQRHLVV 105
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA,
HIVp17, p17, MA) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 101
Score = 24.1 bits (53), Expect = 7.6
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 13 HCVHY-YDLRNTKEAL 27
+CVH D+++TKEAL
Sbjct: 80 YCVHQRIDVKDTKEAL 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 824,356
Number of extensions: 35090
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 80
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)