BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10663
(572 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/575 (23%), Positives = 238/575 (41%), Gaps = 50/575 (8%)
Query: 1 CLTAKLLAQSGCSVLILEAG--PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
+ A+L SVL+LEAG + + P + + +S DW + + Y
Sbjct: 16 VVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGY---- 71
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNM-TGWTYSDMDAIYTRIERT- 116
+ + R+LGGSS ++ M+ RGS D++R+ + GW + ++ + E
Sbjct: 72 NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVV 131
Query: 117 -KLDXXXXXXXXXXXXXDNDGXXXXXXXX--XXXXNLLRSTFSKAFEDIGFKSPDTFTVS 173
D +G + + +T + E+ F +PD T
Sbjct: 132 PPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEF-FFNPDMGT-G 189
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTG---V 230
+GI+ + + +GQR +S+ +LR + + + V N++VTKL T + V
Sbjct: 190 HPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCV 249
Query: 231 EFRNPQGK-TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKR 289
E+ +G T V A +EVVL+A S+ + +LQ SG+GD LS I + N P VG+
Sbjct: 250 EYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRN 309
Query: 290 LSLH-----PMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYL---- 340
LS H F + TF S N + ++ RTG T + ++N + +L
Sbjct: 310 LSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTAL-IANHLAWLRLPS 368
Query: 341 -DTDFKGNPDVAV---TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGL 396
+ F+ PD A + ++ +T+F D NA L
Sbjct: 369 NSSIFQTFPDPAAGPNSAHW----ETIFSNQWFHPAIPRPDTGSFMSVTNA--------L 416
Query: 397 VSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTN 456
+S P A G +++ +++P P I + E DI ++ AVK R + + + +F
Sbjct: 417 IS--PVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIR 474
Query: 457 SVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFS 516
+++ + I+ + T HP GT M P VV PD +V G
Sbjct: 475 PFDPRLRDPTD-----DAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVD 529
Query: 517 NLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQS 551
LR+V ++P + ++ ++ A I++
Sbjct: 530 GLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKA 564
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 68/379 (17%)
Query: 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 245
DG R +S ++ I ++ + +L FD + + TGV+ + G T ++ A
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTAR 262
Query: 246 REVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK 305
EVVL+ +I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP G+ K
Sbjct: 263 NEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPE--GVVQFEAK 320
Query: 306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
P + + ++ +IG+ + P +D L
Sbjct: 321 QP-------------MVAESTQWWEIGI----------------------FTPTEDGLD- 344
Query: 366 RGHLKAWNVNDDLVERFVKVNADKPILIIGL------VSLCP-----KAEGVVEINSNDP 414
DL+ + V D L G SL P ++ G V + S D
Sbjct: 345 ---------RPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDF 395
Query: 415 TKNPTI--RYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
P + RY E D++ ++ ++ + + + ++ Q+
Sbjct: 396 RDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEA------QT 449
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
+E + I+ T HP GT+RMG D ++ + P+ RV G + LRV V+P +
Sbjct: 450 DEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 533 DSSAVALMLAERCATFIQS 551
+ + +M+ ERCA I+S
Sbjct: 510 NPNITVMMIGERCADLIRS 528
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 5 KLLAQSGCSVLILEAGPDAPISTAIPAM-----WHESIQDSKLDWGFVLESNPSYGLGLK 59
+L SV ++EAGPD +P + W E ++ S DW + +E +
Sbjct: 31 RLSEDPAVSVALVEAGPD---DRGVPEVLQLDRWMELLE-SGYDWDYPIEPQEN-----G 81
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIE 114
++ +R +A+V+GG S N I + D + WE TGW +Y R+E
Sbjct: 82 NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLE 137
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 68/379 (17%)
Query: 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 245
DG R +S ++ I ++ + +L FD + + TGV+ + G T ++ A
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTAR 262
Query: 246 REVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK 305
EVVL+ +I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP G+ K
Sbjct: 263 NEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPE--GVVQFEAK 320
Query: 306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
P + + ++ +IG+ + P +D L
Sbjct: 321 QP-------------MVAESTQWWEIGI----------------------FTPTEDGLD- 344
Query: 366 RGHLKAWNVNDDLVERFVKVNADKPILIIGL------VSLCP-----KAEGVVEINSNDP 414
DL+ + V D L G SL P ++ G V + S D
Sbjct: 345 ---------RPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDF 395
Query: 415 TKNPTI--RYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
P + RY E D++ ++ ++ + + + ++ Q+
Sbjct: 396 RDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEA------QT 449
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
+E + I+ T HP GT+RMG D ++ + P+ RV G + LRV V+P +
Sbjct: 450 DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 533 DSSAVALMLAERCATFIQS 551
+ + +M+ ERCA I+S
Sbjct: 510 NPNITVMMIGERCADLIRS 528
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 5 KLLAQSGCSVLILEAGPDAPISTAIPAM-----WHESIQDSKLDWGFVLESNPSYGLGLK 59
+L SV ++EAGPD +P + W E ++ S DW + +E +
Sbjct: 31 RLSEDPAVSVALVEAGPD---DRGVPEVLQLDRWMELLE-SGYDWDYPIEPQEN-----G 81
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIE 114
++ +R +A+V+GG S N I + D + WE TGW +Y R+E
Sbjct: 82 NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLE 137
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 68/379 (17%)
Query: 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 245
DG R +S ++ I ++ + +L FD + + TGV+ + G T ++ A
Sbjct: 204 DGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTAR 262
Query: 246 REVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK 305
EVVL+ +I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP G+ K
Sbjct: 263 NEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPE--GVVQFEAK 320
Query: 306 TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
P + + ++ +IG+ + P +D L
Sbjct: 321 QP-------------MVAESTQWWEIGI----------------------FTPTEDGLD- 344
Query: 366 RGHLKAWNVNDDLVERFVKVNADKPILIIGL------VSLCP-----KAEGVVEINSNDP 414
DL+ + V D L G SL P ++ G V + S D
Sbjct: 345 ---------RPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDF 395
Query: 415 TKNPTI--RYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
P + RY E D++ ++ ++ + + + ++ Q+
Sbjct: 396 RDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEA------QT 449
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
+E + I+ T HP GT+RMG D ++ + P+ RV G + LRV V+P +
Sbjct: 450 DEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTV 509
Query: 533 DSSAVALMLAERCATFIQS 551
+ + +M+ ERCA I+S
Sbjct: 510 NPNITVMMIGERCADLIRS 528
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 5 KLLAQSGCSVLILEAGPDAPISTAIPAM-----WHESIQDSKLDWGFVLESNPSYGLGLK 59
+L SV ++EAGPD +P + W E ++ S DW + +E +
Sbjct: 31 RLSEDPAVSVALVEAGPD---DRGVPEVLQLDRWMELLE-SGYDWDYPIEPQEN-----G 81
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIE 114
++ +R +A+V+GG S N I + D + WE TGW +Y R+E
Sbjct: 82 NSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLE 137
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 123/586 (20%), Positives = 215/586 (36%), Gaps = 71/586 (12%)
Query: 2 LTAKLLAQSGCSVLILEAGPDAP-----ISTAIPAMWHESIQDSKLDWGFVLESNPSYGL 56
+ +L +VLI+EAG P I+T AM +++SK DW + +
Sbjct: 21 VAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAM---DLRNSKYDWAY------KTTM 71
Query: 57 GLKDNVVRLNQ----ARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTR 112
+D+ R+ + + LGGSS +N G + +++WE WT+ + Y R
Sbjct: 72 VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPL-VPYLR 130
Query: 113 IERTKLDXXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTV 172
T D R +KA++ +G +
Sbjct: 131 KSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYD 190
Query: 173 SDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF 232
+ G+ + GQR S FL +K+K + + +L +E GV
Sbjct: 191 GEMDGLTHCCDTIYRGQR---SGSFL-FVKNKPNITIVPEVHSKRLIINEADRTCKGVTV 246
Query: 233 RNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSL 292
G + A+REV+L+ + ++L SG+G LS++ I + + VG+ L
Sbjct: 247 VTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMD 306
Query: 293 HPMFFGLSYTFTKTPVSSYTINEIIYEYLTQR----------------TGRFTDIGMSNF 336
HP F + +++++ + +R +G +G
Sbjct: 307 HP-----GVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRI 361
Query: 337 IGYLDTDFK----------GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVN 386
YL+ D + +P + Q +F D + + G W+
Sbjct: 362 DKYLEKDAEYRKAKAANGGKDPFSPLGQPHF-ELDFVCMFGTAFQWHFP-------TPKT 413
Query: 387 ADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKM-VDRVM 445
D +++ LV G V +NS DP + P I + + DI + ++ D +
Sbjct: 414 GDHLTVVVDLVRPISDP-GEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLF 472
Query: 446 KYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAV 505
K FK+ + E+ + + RC + HPTGT R+ D V
Sbjct: 473 KGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTAF------HPTGTARLSKNID-QGV 525
Query: 506 VGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQS 551
V P +V+G LRV VIP+ + E+CA I++
Sbjct: 526 VDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKA 571
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/553 (21%), Positives = 213/553 (38%), Gaps = 81/553 (14%)
Query: 2 LTAKLLAQSGCSVLILEAGPDAPISTAI--PAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L A+L VL++EAG + P I PA W ++Q DW + E+ G
Sbjct: 32 LAARLSEDPDSRVLLIEAG-EEPTDPDIWNPAAW-PALQGRSYDWDYRTEAQ----AGTA 85
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTG---WTYSDMDAIYTRIERT 116
+ R++GGSS ++ M + RG D++ W ++ +G W + ++ ++ IE
Sbjct: 86 GRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAW--VDASGDRRWGWDELLPVFQAIEDH 143
Query: 117 KLDXXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHV 176
L + L F +A +G + + +
Sbjct: 144 PLGGDGIHGKGGPLPIH---------LPADEVSPLARAFIEAGASLGLPRLEGHNSGEMI 194
Query: 177 GIAPPMYYLKDGQRMIASSIFL-RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 235
G+ P ++DG+R+ A+ +L +A++ + + + S V +L + +V +E
Sbjct: 195 GVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGR 252
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
QG + +V A+ ++VL A ++ S +L +SG+G +L + + ++P +G+ L H +
Sbjct: 253 QG-SAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLL 310
Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTD---FKGNPDVAV 352
G Y K PV + S + Y+ D G P++ V
Sbjct: 311 GAGNLYAARK-PVPPSRLQH------------------SESMAYMRADSFTAAGQPEIVV 351
Query: 353 TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPI-LIIGLVSLCPKAEGVVEINS 411
P + E F A L+ G+ P + G V I+
Sbjct: 352 GCGVAPI------------------VSESFPAPAAGSAYSLLFGITH--PTSRGSVRISG 391
Query: 412 NDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRD-FKNFQTNSVQLEIKECAKCKY 470
+ + I P Y + + R + +RD ++ + +
Sbjct: 392 PE-LGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL---LPGTPNSAA 447
Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM 530
+ +++ I T +HP GT RMG DP AVV + R+ NL VV ++P
Sbjct: 448 EMDDF----IARSVITHHHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLT 501
Query: 531 VTDSSAVALMLAE 543
A L +AE
Sbjct: 502 AGPIHAAVLAIAE 514
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 124/568 (21%), Positives = 203/568 (35%), Gaps = 50/568 (8%)
Query: 4 AKLLAQSGCSVLILEAGP----DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
A+L SVL++E+G PI + A + I S +D + + L
Sbjct: 36 ARLTENPNISVLVIESGSYESDRGPIIEDLNA--YGDIFGSSVDHAY-----ETVELATN 88
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKL 118
+ + LGGS+++N R + + WE + GW + ++ A + ER +
Sbjct: 89 NQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARA 148
Query: 119 DXXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAF----EDIGFKSPDTFTVSD 174
G S KA ED G + F D
Sbjct: 149 PNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGD 208
Query: 175 HVGIAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVE 231
G++ P +D R A+ +L + +QV V K+ + T + GVE
Sbjct: 209 PHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVE 268
Query: 232 FRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLS 291
F +G T V A EV+LAA S S IL+ SG+G ++L I V +LP VG L
Sbjct: 269 FGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQ 327
Query: 292 LHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVA 351
+ ++ ++S + + F D L+T + + A
Sbjct: 328 DQ------TTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHE-LLNTKLEQWAEEA 380
Query: 352 VTQYYFPAQDTLFLR-GHLKAWNVNDDLV--ERFVKVNADKPILIIGLVSLCPKAEGVVE 408
V + F L ++ + + W VN ++ E F+ + + L P G V
Sbjct: 381 VARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAG---VASFDVWDLLPFTRGYVH 437
Query: 409 INSNDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRV------MKYRDFKNFQTNSVQLE 461
I DP + P Y E D+ A ++ + Y + +++ +
Sbjct: 438 ILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYD 497
Query: 462 IKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVV 521
A +Y I Y H GT M P + VV RV G LRV+
Sbjct: 498 ADLSAWTEY---------IPYHFRPNYHGVGTCSM-MPKEMGGVVDNAARVYGVQGLRVI 547
Query: 522 GEPVIPVEMVTDSSAVALMLAERCATFI 549
+ P +M + V +A + + I
Sbjct: 548 DGSIPPTQMSSHVMTVFYAMALKISDAI 575
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 203 DKNTVQVSKNSEVTKLCFDETKTKVT--GVEFRNPQGKTIK--VNANREVVLAANSINSV 258
D N ++V+ ++ V K+ F + VT GV +++ G + V EV+++A I S
Sbjct: 205 DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSP 264
Query: 259 RILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 297
++L SGVG + LS NIP+V + P VG+ L +P F
Sbjct: 265 QLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 303
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 8/228 (3%)
Query: 65 LNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDXXXX 123
+ + LGGS++IN R + + WE + M GW + +M + E +
Sbjct: 98 IKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQ 157
Query: 124 XXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFED----IGFKSPDTFTVSDHVGIA 179
G S KA + +G F G++
Sbjct: 158 LAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVS 217
Query: 180 PPMYYLKDGQ-RMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNPQ 236
M L + Q R+ A+ +L ++ +++ V K+ F +T + + GV F +
Sbjct: 218 MIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNK 277
Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP 284
V A EV+LAA S S IL+ SG+G ++L + N+ + +LP
Sbjct: 278 AVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP 325
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 39/242 (16%)
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
DNV + RVLGG+SIIN ++ R + Y G++ W ++ Y +E T +
Sbjct: 96 DNV----RGRVLGGTSIINAGVYARANTSIYSA-SGVD---WDMDLVNQTYEWVEDTIV- 146
Query: 120 XXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGI- 178
+S AF + G F++ G
Sbjct: 147 ------------------------YKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTR 182
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQG 237
+ G R A + + + N ++V ++ V K+ F TGV +R+ G
Sbjct: 183 ITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNG 240
Query: 238 KTIK--VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
+ V + EV+++A +I + ++L SGVG + LS NIP+V + P VG+ L +P
Sbjct: 241 TPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPR 300
Query: 296 FF 297
F
Sbjct: 301 NF 302
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 39/242 (16%)
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
DNV + RVLGG+SIIN ++ R + Y G++ W ++ Y +E T +
Sbjct: 96 DNV----RGRVLGGTSIINAGVYARANTSIYSA-SGVD---WDMDLVNQTYEWVEDTIV- 146
Query: 120 XXXXXXXXXXXXXDNDGXXXXXXXXXXXXNLLRSTFSKAFEDIGFKSPDTFTVSDHVGI- 178
+S AF + G F++ G
Sbjct: 147 ------------------------YKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTR 182
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK-TKVTGVEFRNPQG 237
+ G R A + + + N ++V ++ V K+ F TGV +R+ G
Sbjct: 183 ITGSTFDNKGTRHAADELLNKG--NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNG 240
Query: 238 KTIK--VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
+ V + EV+++A +I + ++L SGVG + LS NIP+V + P VG+ L +P
Sbjct: 241 TPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPR 300
Query: 296 FF 297
F
Sbjct: 301 NF 302
>pdb|4AN5|A Chain A, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
pdb|4AN5|B Chain B, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
pdb|4AN5|C Chain C, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
pdb|4AN5|D Chain D, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
pdb|4AN5|E Chain E, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
pdb|4AN5|F Chain F, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
pdb|4AN5|G Chain G, Capsid Structure And Its Stability At The Late Stages Of
Bacteriophage Spp1 Assembly
Length = 324
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 17/181 (9%)
Query: 365 LRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPL 424
L G + N DDLV + + DK +LI+ + + ++ +DP + R
Sbjct: 62 LDGDSQVLNDTDDLVPQKINAGQDKAVLIL-RGNAWSSHDLAATLSGSDPMQAIGSRVAA 120
Query: 425 YTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKY-- 482
Y E K + + V F N +L+I A Y +E + + K
Sbjct: 121 YWAREMQKIVFAELAGV--------FSNDDMKDNKLDISGTADGIYSAETFVDASYKLGD 172
Query: 483 ---LSTTTNHPTGTLRMGPPSDPLAVVG---PDFRVNGFSNLRVVGEPVIPVEMVTDSSA 536
L T + T+ D + V R + N RV+ + +PVE + D +
Sbjct: 173 HESLLTAIGMHSATMASAVKQDLIEFVKDSQSGIRFPTYMNKRVIVDDSMPVETLEDGTK 232
Query: 537 V 537
V
Sbjct: 233 V 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,596,146
Number of Sequences: 62578
Number of extensions: 640432
Number of successful extensions: 1445
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 38
length of query: 572
length of database: 14,973,337
effective HSP length: 104
effective length of query: 468
effective length of database: 8,465,225
effective search space: 3961725300
effective search space used: 3961725300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)