BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10663
(572 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 157/539 (29%), Positives = 254/539 (47%), Gaps = 26/539 (4%)
Query: 14 VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
VL++EAG D P+ IP+M+ I S +D+ + E P L + + +VLGG
Sbjct: 91 VLLIEAGGDEPVGAQIPSMFLNFI-GSDIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGG 149
Query: 74 SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIE-RTKLDTVRTETESETVTV 132
+S++N M++ RG++ DY+ W GW Y+D+ + + E LD V TE ++
Sbjct: 150 TSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHAK---- 205
Query: 133 DNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMI 192
G + + L KA E++GF D + G ++G R
Sbjct: 206 --GGLLPVGKFPYNPP--LSYAILKAGEELGFSVHD-LNGQNSTGFMIAQMTARNGIRYS 260
Query: 193 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
++ FLR + +N + + N+ TK+ V GVE + G T K+ +EVVL+A
Sbjct: 261 SARAFLRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSA 320
Query: 253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYT 312
++NS IL SGVG L + N+ V NLPGVGK L H +F F +
Sbjct: 321 GAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYF---TNFFIDDADTAP 377
Query: 313 IN-EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKA 371
+N EYL R G + G+S+ L T + +P+ Q YF +L +
Sbjct: 378 LNWATAMEYLLFRDGLMSGTGISDVTAKLATRYADSPERPDLQLYFGG----YLASCART 433
Query: 372 WNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDI 431
V + L N + I I V L P++ G + + S DP + P I T E+D+
Sbjct: 434 GQVGELLS------NNSRSIQIFPAV-LNPRSRGFIGLRSADPLEPPRIVANYLTHEQDV 486
Query: 432 KNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPT 491
K ++ +K V R+ + K + + +K C + S+ Y+ CA++ + NH
Sbjct: 487 KTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQA 546
Query: 492 GTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550
G+ +MGP DP+AVV + RV+G LRV+ ++P ++ A A+M+AE+ A ++
Sbjct: 547 GSCKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLK 605
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/539 (28%), Positives = 252/539 (46%), Gaps = 26/539 (4%)
Query: 14 VLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGG 73
VL++EAG D P+ IP+M+ I S +D+ + E L + + +VLGG
Sbjct: 91 VLLIEAGGDEPVGAQIPSMFLNFI-GSDIDYRYNTEPERMACLSSMEQRCYWPRGKVLGG 149
Query: 74 SSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIE-RTKLDTVRTETESETVTV 132
+S++N M++ RG++ DY+ W GW+Y D+ + + E +LD V TE ++
Sbjct: 150 TSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHAK---- 205
Query: 133 DNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMI 192
G + + L KA E++GF D + G ++G R
Sbjct: 206 --GGLLPVGKFPYNPP--LSYALLKAGEEMGFSVQD-LNGQNSTGFMIAQMTARNGIRYS 260
Query: 193 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
++ FLR + +N + + N+ VTK+ V GVE + G K+ +EV+++
Sbjct: 261 SARAFLRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSG 320
Query: 253 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYT 312
++NS +IL SGVG L K N+ V +LPGVGK L H +F F +
Sbjct: 321 GAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYF---TNFFIDDADTAP 377
Query: 313 IN-EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKA 371
+N EYL R G + G+S+ + T + P++ Q YF +L +
Sbjct: 378 LNWATAMEYLLFRDGLMSGTGISDVTAKMATRWADRPNLPDLQLYFGG----YLASCART 433
Query: 372 WNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDI 431
V + L N + I I V L PK+ G + + S DP P I T+E D+
Sbjct: 434 GQVGELLS------NNSRAIQIFPAV-LNPKSRGYITLRSADPLDPPRIFANYLTDERDV 486
Query: 432 KNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPT 491
K ++ +K R+ + K + + +K C + S+ Y+ CA++ + NH
Sbjct: 487 KTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQA 546
Query: 492 GTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550
G+ +MGP DP+AVV + RV+G LRV+ ++P ++ A A+M+AE+ A ++
Sbjct: 547 GSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLK 605
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 153/567 (26%), Positives = 253/567 (44%), Gaps = 67/567 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L S +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDSDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNWAYETEPEPY----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + WTY D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAQQPGLERWTYLDCLPYYRKSE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T DG V+ITT K N L + +A G+ D G
Sbjct: 130 -----TRDIGANDYHGGDGPVSITTCKPGN-NPLFAAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P + G+R + +L K + +++ ++ ++ F+ + GV + +
Sbjct: 184 FGPMDRFVTPKGRRSSTARGYLDTAKQRPNLKIITHATTDRILFE--NKRAVGVAYLHGA 241
Query: 237 GKTIK-VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
T + V+A REV+L A +I S +ILQ+SGVG+A LL +++IP+V +LPGVG+ L H
Sbjct: 242 SNTPQEVHARREVLLCAGAIASPQILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHLE 301
Query: 296 FFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
+ L Y K PVS Y +I E+L TG IG SN F+G
Sbjct: 302 MY-LQYE-CKEPVSLYPALKWWNQPKIGAEWLFNGTG----IGASNH-------FEGGGF 348
Query: 350 VAVTQYYFPAQDTLFLRGHLKAW-NVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
+ + + AW N+ + + N + G S+ +
Sbjct: 349 IRSREEF--------------AWPNIQYHFLPVAINYNGSNAVEAHGFQCHVGSMRSPSR 394
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V I S DP ++P I + + E+D + A+++ +++ F+ + I +
Sbjct: 395 GHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITRQIINQPALDKFRGREISPGI-D 453
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
C Q++E ++ + T HP GT +MG SD +AVV + RV+G LRVV
Sbjct: 454 C-----QTDEQLDEFVRNHAETAYHPCGTCKMG--SDEMAVVDDEGRVHGLEGLRVVDAS 506
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
++P+ + + +A +M+ E+ A I+
Sbjct: 507 IMPLIITGNLNATTIMIGEKIADNIRG 533
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 137/564 (24%), Positives = 251/564 (44%), Gaps = 59/564 (10%)
Query: 2 LTAKLLAQSGCSVLILEAGPDAPISTA--------IPAMWHESIQDSKLDWGFVLESNPS 53
L +L VL+LEAGP ++ + +PA ++ D + +W + E
Sbjct: 55 LAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQ-- 112
Query: 54 YGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRI 113
GL V+ + RV GGSS +N M++ RG DYERW+ GW Y+ + +
Sbjct: 113 --RGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKA 170
Query: 114 ERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
+ +L R DG + ++ KT + L F +A + G+ +
Sbjct: 171 QGHELGASRYRGA--------DGPLRVSRGKTN--HPLHCAFLEATQQAGYPLTEDMNGF 220
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
G + +G+R A+ +L + ++ + V+++ F+ T+ GVE+
Sbjct: 221 QQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFE--GTRAVGVEYV 278
Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G++ + A++EV+L+ +INS ++L SG+G+A L K IP+V +LPGVG+ L H
Sbjct: 279 K-NGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDH 337
Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ + T+ P++ ++ + I E+L + TG + G++ + G
Sbjct: 338 LEIY-IQQACTR-PITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETG-GFIRSQ-PGV 393
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVV 407
P + ++ P+Q V +V + + + + + G +
Sbjct: 394 PHPDIQFHFLPSQ------------------VIDHGRVPTQQEAYQVHVGPMRGTSVGWL 435
Query: 408 EINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAK 467
++ S +P +P I+ + E DI++ VK+ + F+ +Q
Sbjct: 436 KLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQ------PG 489
Query: 468 CKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIP 527
QS++ ++ + + HP+ T +MG PSDP AVV P RV G NLRVV ++P
Sbjct: 490 SHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMP 549
Query: 528 VEMVTDSSAVALMLAERCATFIQS 551
+ + +A +M+AE+ A I+
Sbjct: 550 SMVSGNLNAPTIMIAEKAADIIKG 573
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/560 (26%), Positives = 244/560 (43%), Gaps = 61/560 (10%)
Query: 1 CLTAKLLAQSGCSVLILE-AGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L S SV++LE G D +PA + ++ +WG++ E P L
Sbjct: 16 ALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWGYLSEPEPH----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D++RWE L GW Y+D+ + R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A + GF+ D + S G
Sbjct: 130 ------GGEDGWRGTDGPLHVQRGPVK--NPLFHAFVEAGKQAGFEMTDDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET----KTKVTGVEFRNP 235
G+R A+S +L+ + VQ+ + CF + TGVE
Sbjct: 182 LMEQTTWRGRRWSAASAYLKPALKRPNVQLIR-------CFARKIVIENGRATGVEIER- 233
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
G+ V ANREV+++A+S NS ++L SG+G AA L I + + PGVG+ L H M
Sbjct: 234 GGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDH-M 292
Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRF--TDIGMSN---FIGYLDTDFK-GNPD 349
F TK PVS Y+ ++ + F + +G+SN +L + PD
Sbjct: 293 EFYFQQISTK-PVSLYSWLPWFWQGVAGAQWLFFKSGLGISNQFEACAFLRSAPGVKQPD 351
Query: 350 VAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEI 409
+ QY+F + +R KA N + V N K+ G V +
Sbjct: 352 I---QYHFL---PVAIRYDGKA-AANTHGFQVHVGYN-------------LSKSRGSVTL 391
Query: 410 NSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469
++DP +P IR+ + ED + V++ + + F ++ +Q +
Sbjct: 392 RASDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEIQ------PGER 445
Query: 470 YQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE 529
Q++E ++ + HP GT +MG DP+AVV P+ RV G LRV + P
Sbjct: 446 VQTDEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHV 505
Query: 530 MVTDSSAVALMLAERCATFI 549
+ +A ++M E+ A I
Sbjct: 506 TYGNLNAPSIMTGEKAADHI 525
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 238/558 (42%), Gaps = 57/558 (10%)
Query: 1 CLTAKLLAQSGCSVLILE-AGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L SV++LE G D +PA + ++ +WG++ E P+ L
Sbjct: 16 ALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYLSEPEPN----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D++RWE L GW Y+D+ Y R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A + GF+ + + S G
Sbjct: 130 ------GGEEGWRGTDGPLHVQRGPVK--NPLFHAFIEAGKQAGFEVTEDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET----KTKVTGVEFRNP 235
G+R A+S +LR + V++ + CF + TGVE
Sbjct: 182 LMEQTTWRGRRWSAASAYLRPALKRPNVELVR-------CFARKIVIENGRATGVEIER- 233
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
G+T V ANREV+++A+S NS ++L SG+G AA L + I + + PGVG+ L H M
Sbjct: 234 GGRTEVVRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDH-M 292
Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDF-KGNPDVAV-- 352
F TK PVS Y+ ++ + F G+ + F + P V
Sbjct: 293 EFYFQQVSTK-PVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLRSAPGVKQPD 351
Query: 353 TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
QY+F P + K A + + K+ G V + S
Sbjct: 352 IQYHFLPV------------------AISYDGKAAAKSHGFQVHVGYNLSKSRGDVTLRS 393
Query: 412 NDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQ 471
+DP +P IR+ + ED + V++ + + F ++ +Q K +
Sbjct: 394 SDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEIQ------PGEKVR 447
Query: 472 SEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMV 531
++E ++ + HP GT +MG DP+AVV P+ RV G LRV + P
Sbjct: 448 TDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITY 507
Query: 532 TDSSAVALMLAERCATFI 549
+ +A ++M E+ A I
Sbjct: 508 GNLNAPSIMTGEKAADHI 525
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDMGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDMGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDMGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/566 (24%), Positives = 248/566 (43%), Gaps = 63/566 (11%)
Query: 2 LTAKLLAQSGCSVLILEAGPDAPISTA--------IPAMWHESIQDSKLDWGFVLESNPS 53
L +L VL+LEAGP + + +PA ++ D K +W + E+ P
Sbjct: 60 LANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCDDKYNWYYHTEAQP- 118
Query: 54 YGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRI 113
GL V+ + RV GGSS +N M++ RG DY RW GW Y+ + +
Sbjct: 119 ---GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKA 175
Query: 114 ERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
++ +L + DG + ++ KT + L F +A G+ +
Sbjct: 176 QKHELGA--------NMYRGGDGPLHVSRGKTN--HPLHQAFLQAARQAGYPFTEDMNGF 225
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
G + G+R +S +LR + ++ + V+++ F+ T+ GVE+
Sbjct: 226 QQEGFGWMDMTIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFE--GTRAVGVEYI 283
Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G++ K +REV+L+ +INS ++L SGVG+A L K IP+V +LPGVG+ L H
Sbjct: 284 K-DGQSHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDH 342
Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSNFI--GYLDTDFK 345
+ + + T+ P++ ++ + I E+L RFT G + + G
Sbjct: 343 LEIY-IQHACTQ-PITLHSAQKPLRKVCIGLEWLW----RFTGDGATAHLETGGFIRSRP 396
Query: 346 GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEG 405
G P + ++ P+Q V + + + + ++ + G
Sbjct: 397 GVPHPDIQFHFLPSQ------------------VIDHGRKPTQQEAYQVHVGTMRATSVG 438
Query: 406 VVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKEC 465
+++ S +P +P I + E D+++ VK+ + F F+ +Q
Sbjct: 439 WLKLRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQ------ 492
Query: 466 AKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPV 525
QS++ ++ + + HP+ T +MG PSDP AVV RV G NLRV+ +
Sbjct: 493 PGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASI 552
Query: 526 IPVEMVTDSSAVALMLAERCATFIQS 551
+P + + +A +M+AE+ A I+
Sbjct: 553 MPSVVSGNLNAPTIMIAEKAADVIKG 578
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIFFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKMADMIRG 533
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIFFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKMADMIRG 533
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 245/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG A LL++++IPLV +LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGSAELLAEFDIPLVHDLPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKMADMIRG 533
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 246/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--CKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV +LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKMADMIRG 533
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 246/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--CKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV +LPGVG+ L H
Sbjct: 240 GDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y +I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 450 PGTEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKMADMIRG 533
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 246/568 (43%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + ++ W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPSLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGMQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y + I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPRIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPGILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 152/567 (26%), Positives = 243/567 (42%), Gaps = 67/567 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++ T K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVITSKP-GVNPLFEAMIEAGMQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R S +L K + + + ++ + FD + GVE+
Sbjct: 184 FGPMDRTVTPHGRRASTSRGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGD 241
Query: 237 GKTI--KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
TI + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 242 -STIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHL 300
Query: 295 MFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNP 348
+ L Y K PVS Y + I E+L TG +G SN
Sbjct: 301 EMY-LQYE-CKEPVSLYPALQWWNQPRIGAEWLFGGTG----VGASN------------- 341
Query: 349 DVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
+F A + R N+ + + N + G S+ +
Sbjct: 342 -------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSR 394
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V I S DP ++P I + + E+D + A+++ +M ++ EI
Sbjct: 395 GHVRIKSRDPHQHPGILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGR----EISP 450
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
+C Q++E ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 451 GVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDAS 506
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 507 IMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 237/558 (42%), Gaps = 57/558 (10%)
Query: 1 CLTAKLLAQSGCSVLILE-AGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L SV++LE G D +PA + ++ +WG++ E P+ L
Sbjct: 16 ALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYLSEPEPN----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D+ RWE L GW Y+D+ Y R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A ++ GF+ + + S G
Sbjct: 130 ------GGEEGWRGTDGPLHVQRGPVK--NPLFHAFIEAGKEAGFEVTEDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDET----KTKVTGVEFRNP 235
G+R A+S +LR + V++ + CF + TGVE
Sbjct: 182 LMEQTTWRGRRWSAASAYLRPALKRPNVELIR-------CFARKIVIENGRATGVEIER- 233
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
G+ V ANREV+++A+S NS ++L SG+G AA L + I + + PGVG+ L H M
Sbjct: 234 GGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDH-M 292
Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDF-KGNPDVAV-- 352
F TK PVS Y+ ++ + F G+ + F + P V
Sbjct: 293 EFYFQQVSTK-PVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLRSAPGVKQPD 351
Query: 353 TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
QY+F P + K A + + K+ G V + S
Sbjct: 352 IQYHFLPV------------------AISYDGKAAAKSHGFQVHVGYNLSKSRGNVSLRS 393
Query: 412 NDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQ 471
+DP +P IR+ + ED + V++ + + F ++ +Q K Q
Sbjct: 394 SDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEIQ------PGEKVQ 447
Query: 472 SEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMV 531
++E ++ + HP GT +MG DP+AVV P+ RV G LRV + P
Sbjct: 448 TDEEIDGFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITY 507
Query: 532 TDSSAVALMLAERCATFI 549
+ +A ++M E+ A I
Sbjct: 508 GNLNAPSIMTGEKSADHI 525
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 151/567 (26%), Positives = 243/567 (42%), Gaps = 67/567 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++TT K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVTTSKP-GVNPLFEAMIEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K ++ + + ++ + FD + GVE+
Sbjct: 184 FGPMDRTVTPHGRRASTARGYLDQAKSRSNLTIRTHAMTDHIIFD--GKRAVGVEWLEGD 241
Query: 237 GKTI--KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
TI + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 242 -STIPTRAAANKEVLLCAGAIASPQILQRSGVGNAGLLAEFDIPLVHELPGVGENLQDHL 300
Query: 295 MFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNP 348
+ L Y K PVS Y +I E+L TG IG SN
Sbjct: 301 EMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----IGASN------------- 341
Query: 349 DVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
+F A + R N+ + + N + G S+ +
Sbjct: 342 -------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSR 394
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V I S P ++P I + + E+D + A+++ +M + EI
Sbjct: 395 GHVRIKSRAPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYHGR----EISP 450
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
+C Q++E ++ + T HP GT +MG D ++VV + RV+G LRVV
Sbjct: 451 GVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDAS 506
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 507 IMPQIITGNLNATTIMIGEKMADMIRG 533
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 150/568 (26%), Positives = 243/568 (42%), Gaps = 69/568 (12%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYETEPEPF----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T E DG V++ T K +N L +A G+ D G
Sbjct: 130 -----TRDVGENDYHGGDGPVSVITSKP-GVNPLFEAMIEAGMQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K + + + ++ + FD + GVE+ +
Sbjct: 184 FGPMDRTVTPHGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWL--E 239
Query: 237 GKTI---KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + + AN+EV+L A +I S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H
Sbjct: 240 GDSTIPTRAAANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGN 347
+ L Y K PVS Y + I E+L TG +G SN
Sbjct: 300 LEMY-LQYE-CKEPVSLYPALQWWNQPRIGAEWLFGGTG----VGASN------------ 341
Query: 348 PDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKA 403
+F A + R N+ + + N + G S+ +
Sbjct: 342 --------HFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPS 393
Query: 404 EGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK 463
G V I S DP ++P I + + E+D + A++ +M ++ EI
Sbjct: 394 RGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRTTREIMHQPALDQYRGR----EIS 449
Query: 464 ECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE 523
+C Q++E ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 450 PGVEC--QTDEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDA 505
Query: 524 PVIPVEMVTDSSAVALMLAERCATFIQS 551
++P + + +A +M+ E+ A I+
Sbjct: 506 SIMPQIITGNLNATTIMIGEKIADMIRG 533
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 142/545 (26%), Positives = 236/545 (43%), Gaps = 55/545 (10%)
Query: 13 SVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVL 71
SV+++EAG D +PA + + +WG++ E P+ L + + + +V+
Sbjct: 28 SVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEPEPN----LDNRRITAPRGKVI 83
Query: 72 GGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVT 131
GGSS IN +++ RG D+ RWE L GW Y+D+ + R+E + E
Sbjct: 84 GGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSH--------GGEEGW 135
Query: 132 VDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRM 191
DG + + + N L F +A GF+ D + S G + +G+R
Sbjct: 136 RGTDGPLHVQ--RGPVSNPLFHAFIQAGAQAGFELTDDYNGSKQEGFGLMEQTIHNGRRW 193
Query: 192 IASSIFLR-AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVL 250
A++ +L+ A+K N V N K+ + + GVE +G+ V ANREV++
Sbjct: 194 SAANAYLKPALKRGNVTLV--NGFARKVIIE--NGRAVGVEIER-RGRVETVKANREVIV 248
Query: 251 AANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSS 310
+A+S NS ++L SG+G AA L I + + PGVG L H M F TK PVS
Sbjct: 249 SASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-MEFYFQQVSTK-PVSL 306
Query: 311 YTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRG--H 368
Y+ ++ + + G+ A Q+ + FLR
Sbjct: 307 YSWLPWFWQGVAGAQWLLSKGGLG----------------ASNQF----EACAFLRSAPG 346
Query: 369 LKAWNVNDDLVERFVKVNADKPILIIGLVSLC----PKAEGVVEINSNDPTKNPTIRYPL 424
LK ++ + + + G + K+ G V + S DP +P IR+
Sbjct: 347 LKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKSRGNVTLRSADPHDDPVIRFNY 406
Query: 425 YTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLS 484
+ ED + V++ + + F +F+ +Q E + Q + + R ++
Sbjct: 407 MSHPEDWEKFRHCVRLTREIFGQKAFDDFRGPEIQ--PGENIETDEQIDAFLREHLE--- 461
Query: 485 TTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAER 544
+ HP GT RMG +DP+AVV P+ RV G LRV + P + + ++M E+
Sbjct: 462 -SAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEK 520
Query: 545 CATFI 549
A I
Sbjct: 521 AADHI 525
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 245/570 (42%), Gaps = 69/570 (12%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDA---PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLG 57
L A+L +VL+LEAG + +PA + DW + + P G
Sbjct: 21 VLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPSGNRFYDWEYQTDEEPHMGR- 79
Query: 58 LKDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIE 114
R++ AR VLGGSS IN MI+ RG+ DYE W E M W ++ + ++E
Sbjct: 80 ------RVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTWDFAHCLPYFKKLE 133
Query: 115 RT----KLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTF 170
T D VR +DG + + + N L +F A + G+
Sbjct: 134 TTYGAAPYDKVRG----------HDGPIKLK--RGPATNPLFKSFFNAGVEAGYHKTADV 181
Query: 171 TVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTK-VTG 229
G P + G+RM AS +LR + + V + VTKL FDE +K VTG
Sbjct: 182 NGYRQEGFGPFDSQVHHGRRMSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVTG 241
Query: 230 VEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKR 289
V F+ GK V+AN EV+L+ + N+ ++LQ SG+GD+ L I +LPGVG+
Sbjct: 242 VTFKK-NGKEHTVHAN-EVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGEN 299
Query: 290 LSLHPMFFGLSYTFTKTPVS---SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKG 346
H + + + K PVS S + + + L R ++F G +
Sbjct: 300 FEDHLEVY-IQHK-CKQPVSLQPSLDVKRMPFIGLQWIFARKGAAASNHFEG--GGFVRS 355
Query: 347 NPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGL-VSLCP---K 402
N DV F + V+ + K + G V + P
Sbjct: 356 NDDVDYPNLMF-------------------HFLPIAVRYDGQKAPVAHGYQVHVGPMYSN 396
Query: 403 AEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEI 462
+ G ++I S DP + P+I + + +ED + + A+++ ++K + F +
Sbjct: 397 SRGSLKIKSKDPFEKPSIVFNYLSTKEDEREWIEAIRVARNILKQKAMDPFNGGEI---- 452
Query: 463 KECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGP-DFRVNGFSNLRVV 521
+ Q++E ++ T HP+ + +MGP SDP+AVV P +V+G NLRVV
Sbjct: 453 --SPGPQVQTDEEILDWVRKDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVV 510
Query: 522 GEPVIPVEMVTDSSAVALMLAERCATFIQS 551
+P + A LMLAE+ A I+
Sbjct: 511 DASAMPRTTNGNIHAPVLMLAEKAADIIRG 540
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 245/570 (42%), Gaps = 69/570 (12%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDA---PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLG 57
L A+L +VL+LEAG + +PA + DW + + P G
Sbjct: 21 VLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPSGNRFYDWEYQTDEEPHMGR- 79
Query: 58 LKDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIE 114
R++ AR VLGGSS IN MI+ RG+ DYE W E M W ++ + ++E
Sbjct: 80 ------RVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTWDFAHCLPYFKKLE 133
Query: 115 RT----KLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTF 170
T D VR +DG + + + N L +F A + G+
Sbjct: 134 TTYGAAPYDKVRG----------HDGPIKLK--RGPATNPLFKSFFNAGVEAGYHKTADV 181
Query: 171 TVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTK-VTG 229
G P + G+RM AS +LR + + V + VTKL FDE +K VTG
Sbjct: 182 NGYRQEGFGPFDSQVHHGRRMSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVTG 241
Query: 230 VEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKR 289
V F+ GK V+AN EV+L+ + N+ ++LQ SG+GD+ L I +LPGVG+
Sbjct: 242 VTFKK-NGKEHTVHAN-EVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGEN 299
Query: 290 LSLHPMFFGLSYTFTKTPVS---SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKG 346
H + + + K PVS S + + + L R ++F G +
Sbjct: 300 FEDHLEVY-IQHK-CKQPVSLQPSLDVKRMPFIGLQWIFARKGAAASNHFEG--GGFVRS 355
Query: 347 NPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGL-VSLCP---K 402
N DV F + V+ + K + G V + P
Sbjct: 356 NDDVDYPNLMF-------------------HFLPIAVRYDGQKAPVAHGYQVHVGPMYSN 396
Query: 403 AEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEI 462
+ G ++I S DP + P+I + + +ED + + A+++ ++K + F +
Sbjct: 397 SRGSLKIKSKDPFEKPSIVFNYLSTKEDEREWVEAIRVARNILKQKAMDPFNGGEI---- 452
Query: 463 KECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGP-DFRVNGFSNLRVV 521
+ Q++E ++ T HP+ + +MGP SDP+AVV P +V+G NLRVV
Sbjct: 453 --SPGPQVQTDEEILDWVRKDGETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRVV 510
Query: 522 GEPVIPVEMVTDSSAVALMLAERCATFIQS 551
+P + A LMLAE+ A I+
Sbjct: 511 DASAMPRTTNGNIHAPVLMLAEKAADIIRG 540
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 139/560 (24%), Positives = 233/560 (41%), Gaps = 57/560 (10%)
Query: 1 CLTAKLLAQSG-CSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
C+ A L++SG SVL+LEAG D I +P + K W F ++ L
Sbjct: 17 CVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKYAWQFETDAEAD----L 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL 118
+ + +VLGGSS IN M++ RG D++ WE GW Y + R E
Sbjct: 73 DGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENW-- 130
Query: 119 DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGI 178
+ E DG ++ +N L F A ++ G+ + G
Sbjct: 131 ------IDGEDEYRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDYNGYQQEGF 184
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
P +K+G R S+ +L K ++ ++ K V ++ +E + GVEF G+
Sbjct: 185 GPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEKR--AVGVEF-ELAGE 241
Query: 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
A EV+ +A SI SV++LQ SG+G +L K + V +LPGVG+ L H +
Sbjct: 242 LRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDHLEVY- 300
Query: 299 LSYTFTK-----TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVT 353
Y K + ++ I E++ R G +G +N
Sbjct: 301 FQYHCQKPITLNGKLDWFSKGLIGAEWILTRKG----LGATN------------------ 338
Query: 354 QYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNA----DKPILIIGLVSLCPKAEGVVEI 409
+F + + R LK N+ + ++ + D + + P++ G VEI
Sbjct: 339 --HFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEI 396
Query: 410 NSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469
S +P+ P I++ + E D ++ +++ ++ F+ +Q I +
Sbjct: 397 VSANPSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDAE 456
Query: 470 YQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE 529
+K + HP+ + +MG DP+AV+ + RV G +NLRVV V P
Sbjct: 457 IDQ------WVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTI 510
Query: 530 MVTDSSAVALMLAERCATFI 549
+ +A +M+AER A I
Sbjct: 511 PNGNLNAPTIMVAERAADLI 530
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 146/567 (25%), Positives = 249/567 (43%), Gaps = 67/567 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L A+L +G +VL+LEAG PD + T +PA +Q + +W + E P +
Sbjct: 21 LAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETEPEPH----M 76
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ DY+ W + + W+Y D + + E
Sbjct: 77 DNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAE--- 133
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T +G V++TT K N L +A GF D G
Sbjct: 134 -----TRDIGPNDYHGGEGPVSVTTPKAGN-NPLFHAMVEAGVQAGFPRTDDLNGYQQEG 187
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K ++T+ + ++ ++ F+ + GV +
Sbjct: 188 FGPMDRTVTPKGRRASTARGYLDEAKKRDTLSIVTHALTDRILFE--GKRAVGVAYLVGD 245
Query: 237 GKT-IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
T I+V A +EV+L +I S +ILQ+SGVG A +L+K +IP+V +LPGVG+ L H
Sbjct: 246 SDTRIEVRARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLE 305
Query: 296 FFGLSYTFTKTPVSSY------TINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
+ L Y T+ PVS Y I E++ TG IG SN F+
Sbjct: 306 MY-LQYACTQ-PVSLYPSLKWWNQPAIGAEWMFLGTG----IGASN-------QFEAGGF 352
Query: 350 VAVTQYYFPAQDTLFLRGHLKAW-NVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
+ ++ + W N+ + + N K + G S+ +
Sbjct: 353 IRSSEAF--------------EWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSR 398
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V + S DP + P+I + ++D + +++ +M+ ++ + I
Sbjct: 399 GRVHVKSKDPREYPSILFNYMASDQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI-- 456
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
QS+E ++ + T HP+ + +MG +D +AVV RV+G NLRVV
Sbjct: 457 ----DVQSDEALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGMQNLRVVDAS 510
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
++P+ + +A +M+AE+ A I+
Sbjct: 511 IMPIITTGNLNAPTIMIAEKIADKIRG 537
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 140/556 (25%), Positives = 238/556 (42%), Gaps = 53/556 (9%)
Query: 1 CLTAKLLAQSGCSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L SVL++EAG D +PA + + +WG++ E P+ L
Sbjct: 16 ALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEPEPN----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D+ RWE L +GW Y+D+ + R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A + GF++ + + S G
Sbjct: 130 ------GGEEGWRGTDGPLHVQ--RGGFTNPLFRAFIEAGKQAGFETTEDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT 239
+ G+R A++ +L+ ++ V + + + E + TGVE G+T
Sbjct: 182 LMEQTIFAGRRWSAANAYLKPALKRDNVGIVYG--LARRIVIEN-GRATGVEIER-GGRT 237
Query: 240 IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGL 299
V ANREV+++A+S NS ++L SG+G A L + I + + PGVG L H M F
Sbjct: 238 EVVKANREVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDH-MEFYF 296
Query: 300 SYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPA 359
TK PVS Y+ ++ + + G+ A Q+
Sbjct: 297 QQVSTK-PVSLYSWLPWFWQGVAGAQWLLSKGGLG----------------ASNQF---- 335
Query: 360 QDTLFLRG--HLKAWNVNDDLVERFV----KVNADKPILIIGLVSLCPKAEGVVEINSND 413
+ FLR LK ++ + + K A + + K+ G V + S D
Sbjct: 336 EACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGSVTLRSPD 395
Query: 414 PTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSE 473
P +P +R+ + ED + V++ + + F ++ +Q E + Q +
Sbjct: 396 PKADPVLRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDAYRGPEIQ--PGEGVQSDEQID 453
Query: 474 EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTD 533
+ R ++ + HP GT +MG DP+AVV P RV G LRV + P +
Sbjct: 454 SFLREHLE----SAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGN 509
Query: 534 SSAVALMLAERCATFI 549
+ ++M E+ A I
Sbjct: 510 LNGPSIMTGEKAADHI 525
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 144/560 (25%), Positives = 244/560 (43%), Gaps = 55/560 (9%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L + SVL+LEAG PD + T +PA +Q + +W + + P +
Sbjct: 19 LATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPH----M 74
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D++ W + + WTY D + + E
Sbjct: 75 NNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAESRD 134
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
+ DG V++TT K N L +A G+ D G
Sbjct: 135 I--------GPNDYHGGDGPVSVTTPKAGN-NPLFHAMVEAGVQAGYPRTDDLNGYQQEG 185
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L +++ + + ++ ++ FD + N
Sbjct: 186 FGPMDRTVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILFDGKRASGVSYLIGNAN 245
Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF 296
T + A REV+L A +I S +ILQ+SGVG AALL + +I LV LPGVG+ L H
Sbjct: 246 DAT-EARARREVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELPGVGQNLQDHLEM 304
Query: 297 FGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYY 356
+ L Y T+ PVS Y +++ + IG F GN A Q+
Sbjct: 305 Y-LQYACTQ-PVSLYPALKLLNQ---------PGIGAQWL-------FTGNGIGASNQF- 345
Query: 357 FPAQDTLFLRGHLK-AW-NVNDDLVERFVKVNADKPILIIGLV----SLCPKAEGVVEIN 410
+ F+R + AW N+ + + N + G S+ + G +++
Sbjct: 346 ---EAGGFIRTRPEFAWPNIQFHFLPVAINYNGSNAVNEHGFQAHVGSMRSPSRGRIQLK 402
Query: 411 SNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470
S DP ++P+I + + E+D + A+++ +M +++ EI C
Sbjct: 403 SKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGR----EISPGIDC-- 456
Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM 530
QS+ I+ + T HP+ + +MG D +AVV RV+G LRVV ++P +
Sbjct: 457 QSDAELDAFIREHAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQGLRVVDASIMPEII 514
Query: 531 VTDSSAVALMLAERCATFIQ 550
+ +A +M+AE+ A I+
Sbjct: 515 TGNLNATTIMMAEKIADRIR 534
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 139/560 (24%), Positives = 232/560 (41%), Gaps = 57/560 (10%)
Query: 1 CLTAKLLAQSG-CSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
C+ A L++SG SVL+LEAG D I +P + K W F ++ L
Sbjct: 17 CVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKYAWQFETDAEAD----L 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL 118
+ + +VLGGSS IN M++ RG D++ WE GW Y + R E
Sbjct: 73 DGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENW-- 130
Query: 119 DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGI 178
+ E DG ++ +N L F A ++ G+ + G
Sbjct: 131 ------IDGEDEYRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDYNGYQQEGF 184
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
P +K+G R S+ +L K ++ ++ K V ++ +E + GVEF G+
Sbjct: 185 GPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEKR--AVGVEF-ELAGE 241
Query: 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
A EV+ +A SI SV++LQ SG+G +L K + V +LPGVG+ L H +
Sbjct: 242 LRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHLEVY- 300
Query: 299 LSYTFTK-----TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVT 353
Y K + ++ I E++ R G +G +N
Sbjct: 301 FQYHCQKPITLNGKLDWFSKGLIGTEWILTRKG----LGATN------------------ 338
Query: 354 QYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNA----DKPILIIGLVSLCPKAEGVVEI 409
+F + + R LK N+ + ++ + D + + P++ G VEI
Sbjct: 339 --HFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEI 396
Query: 410 NSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469
S +P P I++ + E D ++ +++ ++ F+ +Q I +
Sbjct: 397 VSANPLDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQPGINVATDAE 456
Query: 470 YQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE 529
+K + HP+ + +MG DP+AV+ + RV G +NLRVV V P
Sbjct: 457 IDQ------WVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTI 510
Query: 530 MVTDSSAVALMLAERCATFI 549
+ +A +M+AER A I
Sbjct: 511 PNGNLNAPTIMVAERAADLI 530
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 143/557 (25%), Positives = 234/557 (42%), Gaps = 55/557 (9%)
Query: 1 CLTAKLLAQSGCSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L SVL++EAG D +PA + + +WG++ E P+ L
Sbjct: 16 ALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEPEPN----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D+ RWE L +GW Y+D+ + R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A + GF++ D + S G
Sbjct: 130 ------GGEEGWRGTDGPLHVQ--RGGFTNPLFRAFIEAGKQAGFETTDDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLR-AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
+ G+R A++ +L+ A+K KN V K+ ++ + TGVE GK
Sbjct: 182 LMEQTIFSGRRWSAANAYLKPALKRKNVGMVY--GLARKIVIEDGRA--TGVEIER-GGK 236
Query: 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
V A REV+++A+S NS ++L SG+G L+ I + + PGVG L H M F
Sbjct: 237 VEVVKATREVIVSASSFNSPKLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDH-MEFY 295
Query: 299 LSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFP 358
TK PVS Y+ ++ + + G+ A Q+
Sbjct: 296 FQQVSTK-PVSLYSWLPWFWQGVAGAQWLLSKGGLG----------------ASNQF--- 335
Query: 359 AQDTLFLRG--HLKAWNVNDDLVERFV----KVNADKPILIIGLVSLCPKAEGVVEINSN 412
+ FLR LK ++ + + K A + + K+ G V + S
Sbjct: 336 -EACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGSVTLRSP 394
Query: 413 DPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
DP P +R+ + ED + V++ + F ++ +Q QS
Sbjct: 395 DPKAEPVLRFNYMSHPEDWEKFRHCVRLTREIFGQTAFDAYRGPEIQ------PGEGVQS 448
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
+E ++ + HP GT +MG DP+AVV P RV G LRV + P
Sbjct: 449 DEQIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYG 508
Query: 533 DSSAVALMLAERCATFI 549
+ + ++M E+ A I
Sbjct: 509 NLNGPSIMTGEKAADHI 525
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 145/567 (25%), Positives = 250/567 (44%), Gaps = 67/567 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L A+L +G +VL+LEAG PD + T +PA +Q + +W + E P +
Sbjct: 21 LAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETEPEPH----M 76
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ DY+ W + + W+Y D + + E
Sbjct: 77 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAE--- 133
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T +G V++TT K N L +A GF D G
Sbjct: 134 -----TRDIGPNDYHGGEGPVSVTTPKAGN-NPLFHAMVEAGVQAGFPRTDDLNGYQQEG 187
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P +G+R + +L K ++T+ + ++ ++ F+ + GV +
Sbjct: 188 FGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILFE--GKRAVGVAYLVGD 245
Query: 237 GKT-IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
T I+ A +EV+L +I S +ILQ+SGVG A +L+K +IP+V +LPGVG+ L H
Sbjct: 246 SDTRIQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLE 305
Query: 296 FFGLSYTFTKTPVSSY------TINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
+ L Y T+ PVS Y I E++ TG IG SN F+
Sbjct: 306 MY-LQYACTQ-PVSLYPSLKWWNQPAIGAEWMFLGTG----IGASN-------QFEAGGF 352
Query: 350 VAVTQYYFPAQDTLFLRGHLKAW-NVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
+ ++ + W N+ + + N K + G S+ +
Sbjct: 353 IRSSEAF--------------EWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSR 398
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V++ S DP + P+I + E+D + +++ +M+ ++ + I
Sbjct: 399 GRVQVKSKDPREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI-- 456
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
QS+E ++ + T HP+ + +MG +D +AVV RV+G +LRVV
Sbjct: 457 ----DVQSDEALDQFVREHAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDAS 510
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
++P+ + +A +M+AE+ A I+
Sbjct: 511 IMPIITTGNLNAPTIMIAEKIADKIRG 537
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 141/566 (24%), Positives = 246/566 (43%), Gaps = 65/566 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L A+L + +VL+LEAG PD + T +PA +Q + +W + + P +
Sbjct: 17 LAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYETDPEPH----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D++ W L+ + W+Y D + + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T +G V++TT K + L + + + G+ D G
Sbjct: 130 -----TRDVGPNDFHGGEGPVSVTTPKIDNNPLFHAMVAAGVQ-AGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNP 235
P G+R + +L + +N + + ++ ++ F+ + TGV + +
Sbjct: 184 FGPMDRTVTPKGRRASTARGYLDQARPRNNLTIITHALTDRILFE--GKRATGVSYLKGD 241
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
G +A REV+L +I S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H
Sbjct: 242 AGTGQTAHARREVLLCGGAIASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLE 301
Query: 296 FFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
+ L Y+ K PVS Y +I E+L TG +G SN
Sbjct: 302 MY-LQYS-CKQPVSLYPALLWFNQPKIGIEWLFNGTG----VGASN-------------- 341
Query: 350 VAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKAEG 405
F A + R N+ + + N + G S+ + G
Sbjct: 342 ------QFEAGGFIRSRDAFTWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRG 395
Query: 406 VVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKEC 465
+++ S DP ++P+I + + E+D A+++ ++ ++ EI
Sbjct: 396 RIQVKSKDPRQHPSILFNYMSNEQDWHEFRDAIRITREIIAQPALDPYRGR----EISPG 451
Query: 466 AKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPV 525
A QS++ I+ + T HP+ + +MG D +AVV RV+G LRVV +
Sbjct: 452 ANV--QSDDELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASI 507
Query: 526 IPVEMVTDSSAVALMLAERCATFIQS 551
+P + + +A +M+AE+ A I+
Sbjct: 508 MPQIITGNLNATTIMIAEKIADRIRG 533
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 141/566 (24%), Positives = 246/566 (43%), Gaps = 65/566 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L A+L + +VL+LEAG PD + T +PA +Q + +W + + P +
Sbjct: 17 LAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYETDPEPH----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D++ W L+ + W+Y D + + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T +G V++TT K + L + + + G+ D G
Sbjct: 130 -----TRDVGPNDFHGGEGPVSVTTPKIDNNPLFHAMVAAGVQ-AGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNP 235
P G+R + +L + +N + + ++ ++ F+ + TGV + +
Sbjct: 184 FGPMDRTVTPKGRRASTARGYLDQARPRNNLTIITHALTDRILFE--GKRATGVSYLKGD 241
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
G +A REV+L +I S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H
Sbjct: 242 AGTGQTAHARREVLLCGGAIASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLE 301
Query: 296 FFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
+ L Y+ K PVS Y +I E+L TG +G SN
Sbjct: 302 MY-LQYS-CKQPVSLYPALLWFNQPKIGIEWLFNGTG----VGASN-------------- 341
Query: 350 VAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKAEG 405
F A + R N+ + + N + G S+ + G
Sbjct: 342 ------QFEAGGFIRSRDAFTWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRG 395
Query: 406 VVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKEC 465
+++ S DP ++P+I + + E+D A+++ ++ ++ EI
Sbjct: 396 RIQVKSKDPRQHPSILFNYMSNEQDWHEFRDAIRITREIIAQPALDPYRGR----EISPG 451
Query: 466 AKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPV 525
A QS++ I+ + T HP+ + +MG D +AVV RV+G LRVV +
Sbjct: 452 ANV--QSDDELDAFIREHAETAYHPSCSCKMG--DDKMAVVDGQGRVHGVQGLRVVDASI 507
Query: 526 IPVEMVTDSSAVALMLAERCATFIQS 551
+P + + +A +M+AE+ A I+
Sbjct: 508 MPQIITGNLNATTIMIAEKIADRIRG 533
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 237/568 (41%), Gaps = 52/568 (9%)
Query: 1 CLTAKLLAQSGCS-VLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
C+ A L+ SG +L+LEAG D I +P + K W F E+ P GL
Sbjct: 17 CVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYAWQF--ETQPE--AGL 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL 118
+ + RVLGGSS IN M++ RG DY+ W GW+Y + + R E
Sbjct: 73 DSRSLHCPRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQECLPYFRRAE---- 128
Query: 119 DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGI 178
+ E DG V ++N L F A + G+ D + G
Sbjct: 129 ----SWIHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAGYPKTDDYNGYQQEGF 184
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
P + G R S+ +LR ++ + V K VT+ + K + GVE GK
Sbjct: 185 GPMHMTVDKGIRASTSNAYLRRAMKRSNLTVRKGV-VTRKVLIKNKQAI-GVEIE-VGGK 241
Query: 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
V AN EV+L+A S+ S ++LQ SG+G A+L + I + +LPGVG+ L H
Sbjct: 242 VQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDH----- 296
Query: 299 LSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFP 358
L F T+N + +G+ + G + T + D +F
Sbjct: 297 LEVYFQYACHQPITLN--------------SKLGLIS-KGLIGTRWILQKDGLGATNHFE 341
Query: 359 AQDTLFLRGHLKAWNVNDDLVERFVKVNA----DKPILIIGLVSLCPKAEGVVEINSNDP 414
+ + R LK N+ + ++ + D + + P++ G + I S DP
Sbjct: 342 SCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPQSRGRIWITSADP 401
Query: 415 TKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEE 474
+ P I + + E+D ++ +++ ++ +++ +Q S+E
Sbjct: 402 HQKPNIEFNYISTEQDKQDWRDCIRLTREILAQPAMDDYRGEEIQ------PGADITSDE 455
Query: 475 YYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDS 534
++ + HP+ T +MG +DP+ V+ D +V G +LRV+ V P +
Sbjct: 456 AMDAWVRQNVESAYHPSCTCKMGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPTIPNGNL 515
Query: 535 SAVALMLAERCATFI-----QSPVNVTT 557
+A +M+AE+ A I SP N T
Sbjct: 516 NAPTIMVAEKAADAILGNTPLSPSNAPT 543
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 141/557 (25%), Positives = 238/557 (42%), Gaps = 55/557 (9%)
Query: 1 CLTAKLLAQSGCSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L SVL++EAG D +PA + + +WG++ E P+ L
Sbjct: 16 ALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEPEPN----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D+ RWE L GW Y+D+ + R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A + GF++ + + S G
Sbjct: 130 ------GGEEGWRGTDGPLHVQ--RGGFTNPLFRAFVEAGKQAGFETTEDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLR-AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
+ G+R A++ +L+ A+K KN + ++ ++ ++ + TGVE GK
Sbjct: 182 LMEQTIFSGRRWSAANAYLKPALKRKNVEIIYGFAQ--RIVIEDGRA--TGVEIER-GGK 236
Query: 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
V ANREV+++A+S NS ++L SG+G L + I + + PGVG L H M F
Sbjct: 237 IEVVKANREVIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDH-MEFY 295
Query: 299 LSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFP 358
TK PVS Y+ ++ + + G+ A Q+
Sbjct: 296 FQQVSTK-PVSLYSWLPWFWQGVAGAQWLLSKGGLG----------------ASNQF--- 335
Query: 359 AQDTLFLRG--HLKAWNVNDDLVERFV----KVNADKPILIIGLVSLCPKAEGVVEINSN 412
+ FLR LK ++ + + K A + + K+ G V + S
Sbjct: 336 -EACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGSVTLRSP 394
Query: 413 DPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQS 472
DP +P +R+ + ED + V++ + F +++ +Q QS
Sbjct: 395 DPKADPVLRFNYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEIQ------PGESVQS 448
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
+E ++ + HP GT +MG DP+AVV P RV G LRV + P
Sbjct: 449 DEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYG 508
Query: 533 DSSAVALMLAERCATFI 549
+ + ++M E+ A I
Sbjct: 509 NLNGPSIMTGEKAADHI 525
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 144/565 (25%), Positives = 254/565 (44%), Gaps = 63/565 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L G +VL+LEAG PD T +PA +Q + +W + + P +
Sbjct: 19 LATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPH----M 74
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTK 117
+ + + LGGSS+IN M + RG+ DY+ W L + W+Y D + + E
Sbjct: 75 DGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAE--- 131
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T DG V++TT K N L +A G+ + G
Sbjct: 132 -----TRDIGPNDYHGGDGPVSVTTPKAGN-NPLFHAMVEAGVQAGYPRTEDLNGYQQEG 185
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR-NP 235
P +G+R + +L K ++T+ + ++ K+ F+ + GV +
Sbjct: 186 FGPMDRTVTPNGRRASTARGYLDVAKKRSTLTIVTHALTDKVLFE--GKRAVGVRYLVGA 243
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
+ ++ A +EV++ + +I S ++LQ+SGVG A LL +IP+V +LPGVG+ L H
Sbjct: 244 AEERVEARARKEVIVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLE 303
Query: 296 FFGLSYTFTKTPVSSYT----INE--IIYEYLTQRTGRFTDIGMSNFI---GYLDTDFKG 346
+ L Y T+ PVS Y N+ I E+L TG IG SN G++ T
Sbjct: 304 LY-LQYACTQ-PVSLYPSLLWYNQPAIGAEWLFNGTG----IGASNQFEAGGFIRTR--- 354
Query: 347 NPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGV 406
++ +P FL + +N ++ + E + + + S+ + G
Sbjct: 355 ------PEFEWPNIQYHFLPVAIN-YNGSNGVKEHGFQAH---------MGSMRSPSRGR 398
Query: 407 VEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECA 466
V++ S DP ++P+I + E+D + +++ +M+ F+ + I
Sbjct: 399 VQVKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDAFRGREISPGI---- 454
Query: 467 KCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVI 526
+ Q++E I+ + T HP+ + +MG +D +AVV + RV+G LRVV ++
Sbjct: 455 --EVQTDEQLDKFIREHAETAFHPSCSCKMG--TDDMAVVDGEGRVHGMQGLRVVDASIM 510
Query: 527 PVEMVTDSSAVALMLAERCATFIQS 551
P+ + +A +M+AE+ A I+
Sbjct: 511 PIITTGNLNAPTIMMAEKIADKIRG 535
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 142/579 (24%), Positives = 248/579 (42%), Gaps = 68/579 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L + SVL+LEAG PD + T +PA +Q + +W + + P +
Sbjct: 17 LATRLTEDADVSVLLLEAGGPDYRMDFRTQMPAALAFPLQGRRYNWAYETDPEPH----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D++ W + + W+Y D + + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWAKAPGLEDWSYLDCLPYFRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T DG V++TT K L + + G+ + G
Sbjct: 130 -----TRDIGPNDFHGGDGPVSVTTPKAGNNELFHAMVEAGVQ-AGYPRTEDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L + + +++ ++ ++ FD + GV++ +
Sbjct: 184 FGPMDRTVTPKGRRASTARGYLDQARSRPNLKIVTHALTDRIRFD--GKRAVGVDYLQGE 241
Query: 237 GKTI-KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
K + A REV+L A +I S +ILQ+SGVG AALL++ +I LV LPGVG+ L H
Sbjct: 242 AKDVTSARARREVLLCAGAIASPQILQRSGVGPAALLNRLDIDLVHELPGVGENLQDHLE 301
Query: 296 FFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPD 349
+ L Y K PVS Y +I E+L +G IG SN
Sbjct: 302 MY-LQYA-CKKPVSLYPALQWFNQPKIGAEWLFNGSG----IGASN-------------- 341
Query: 350 VAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKAEG 405
F A + R N+ + + N + G S+ + G
Sbjct: 342 ------QFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRG 395
Query: 406 VVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKEC 465
V++ S DP ++P+I + E+D + A+++ +M ++ +
Sbjct: 396 RVQVKSKDPRQHPSILFNYMATEQDWQEFRDAIRITREIMAQPALDEYRGREI------S 449
Query: 466 AKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPV 525
+ Q++E ++ + T HP+ + +MG D +AVV RV+G LRVV +
Sbjct: 450 PGPEVQTDEQLDAFVREHAETAFHPSCSCKMG--EDEMAVVDGQGRVHGLEGLRVVDASI 507
Query: 526 IPVEMVTDSSAVALMLAERCATFIQSPVNVTTVTKTTVE 564
+P+ + + +A +M+AE+ A I+ T + ++T E
Sbjct: 508 MPLIITGNLNATTIMIAEKIADRIR---QRTPLPRSTAE 543
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 145/563 (25%), Positives = 238/563 (42%), Gaps = 67/563 (11%)
Query: 1 CLTAKLLAQSGCSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
L +L SV+++EAG D +PA + + +WG++ E + L
Sbjct: 16 ALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYLSEPEAN----LN 71
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLD 119
+ + + +V+GGSS IN M++ RG D+ RWE L +GW Y+D+ + R+E +
Sbjct: 72 NRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSH-- 129
Query: 120 TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIA 179
E DG + + + N L F +A + GF++ + + S G
Sbjct: 130 ------GGEEGWRGTDGPLHVQ--RGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQEGFG 181
Query: 180 PPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGK 238
+ G+R A++ +L+ ++ V++ + D + TGVE RN G+
Sbjct: 182 LMEQTIFGGRRWSAANAYLKPALKRDNVKIVYGLAQRIVIED---GRATGVEIERN--GR 236
Query: 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 298
V ANREV+++A+S NS ++L SG+G L I + + PGVG L H M F
Sbjct: 237 IEVVKANREVIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDH-MEFY 295
Query: 299 LSYTFTKTPVSSYTINEIIY------EYLTQRTGRFTDIGMSNFI---GYLDT--DFKGN 347
TK PVS Y+ + ++L R G +G SN +L + K
Sbjct: 296 FQQVSTK-PVSLYSWLPWFWQGVAGAQWLLSRGG----LGASNQFEACAFLRSAPGLK-Q 349
Query: 348 PDVAVTQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGV 406
PD+ QY+F P + K A + + K+ G
Sbjct: 350 PDI---QYHFLPV------------------AISYDGKAAAKSHGFQVHVGYNLSKSRGS 388
Query: 407 VEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECA 466
V + S DP +P +R+ + ED + V++ + F +++ +Q
Sbjct: 389 VSLRSADPKADPVLRFNYMSHAEDWEKFRHCVRLTREIFGQSAFHDYRGPEIQ------P 442
Query: 467 KCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVI 526
QS+E ++ + HP GT RMG DP+AVV P RV G LRV +
Sbjct: 443 GEGVQSDEEIDAFLREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIF 502
Query: 527 PVEMVTDSSAVALMLAERCATFI 549
P + + ++M E+ A I
Sbjct: 503 PHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 145/567 (25%), Positives = 253/567 (44%), Gaps = 67/567 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L G +VL+LEAG PD T +PA +Q + +W + + P +
Sbjct: 19 LATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPH----M 74
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTK 117
+ + + LGGSS+IN M + RG+ DY+ W L + WTY D + + E
Sbjct: 75 NGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWTYLDCLPYFRKAE--- 131
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T +G V++TT K N L +A G+ + G
Sbjct: 132 -----TRDIGPNDYHGGEGPVSVTTPKAGN-NPLFHAMVEAGVQAGYPRTEDLNGYQQEG 185
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L K ++T+ + ++ K+ F+ + GV + Q
Sbjct: 186 FGPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFE--GKRAVGVSYL--Q 241
Query: 237 GKT---IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G T ++ A +EV++++ +I S ++LQ+SGVG ALL +IP+V +LPGVG+ L H
Sbjct: 242 GSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDH 301
Query: 294 PMFFGLSYTFTKTPVSSY------TINEIIYEYLTQRTGRFTDIGMSNFI---GYLDTDF 344
+ L Y T+ PVS Y I E+L TG IG SN G++ T
Sbjct: 302 LELY-LQYACTQ-PVSLYPSLLWWNQPAIGAEWLFNGTG----IGASNQFEAGGFIRTR- 354
Query: 345 KGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAE 404
++ +P FL + +N ++ + E + + + S+ +
Sbjct: 355 --------EEFEWPNIQYHFLPVAIN-YNGSNGVKEHGFQAH---------MGSMRSPSR 396
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V++ S DP ++P+I + E+D + +++ +M+ F+ + I
Sbjct: 397 GRVQLKSKDPRQHPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGI-- 454
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
+ Q++E ++ + T HP+ + +MG +D +AVV RV+G LRVV
Sbjct: 455 ----EVQTDEQLDKFVREHAETAFHPSCSCKMG--TDDMAVVDGQGRVHGMQGLRVVDAS 508
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS 551
++P+ + +A +M+AE+ A I+
Sbjct: 509 IMPIITTGNLNAPTIMMAEKIADKIRG 535
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 151/577 (26%), Positives = 243/577 (42%), Gaps = 69/577 (11%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L +VL+LEAG PD T +PA +Q + +W + E P +
Sbjct: 17 LATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNWAYETEPEPY----M 72
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTK 117
+ + + + LGGSS+IN M + RG+ D + W + + W+Y D Y + E
Sbjct: 73 NNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEHWSYLDCLPYYRKAE--- 129
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T DG V++TT K N L +A G+ D G
Sbjct: 130 -----TRDIGPNDYHGGDGPVSVTTPKPGN-NPLFEAMVEAGVQAGYPRTDDLNGYQQEG 183
Query: 178 IAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
P G+R + +L + + + + ++ + F + GVE+ +
Sbjct: 184 FGPMDRTVTPQGRRASTARGYLDQARGRPNLTIRTHALTDHIIF--AGKRAVGVEWLEGE 241
Query: 237 GKTI--KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
TI K AN+EV+L A +I S +ILQ+SGVG+ LL +++IP+V +LPGVG+ L H
Sbjct: 242 -STIPSKATANKEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHL 300
Query: 295 MFFGLSYTFTKTPVSSYTI------NEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNP 348
+ L Y K PVS Y +I E+L TG IG SN
Sbjct: 301 EMY-LQYE-CKEPVSLYPALQWWNQPKIGAEWLFGGTG----IGASN------------- 341
Query: 349 DVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLV----SLCPKAE 404
F A + R N+ + + N + G S+ +
Sbjct: 342 -------QFEAGGFIRSRAEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSR 394
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G V + S DP +P I + + E+D + A+++ +M ++ + I E
Sbjct: 395 GHVRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGI-E 453
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
C QS+ ++ + T HP GT +MG D +AVV + RV+G LRVV
Sbjct: 454 C-----QSDAELDEFVRNHAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDAS 506
Query: 525 VIPVEMVTDSSAVALMLAERCATFIQS--PVNVTTVT 559
++P + + +A +M+ E+ A I+ P+ +T T
Sbjct: 507 IMPQIITGNLNATTIMIGEKMADAIRGRQPLPRSTAT 543
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 137/546 (25%), Positives = 235/546 (43%), Gaps = 57/546 (10%)
Query: 13 SVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVL 71
SV+++E G PD +PA + DWGF E P G + + +VL
Sbjct: 28 SVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFSSEPEPHIG----GRSLVTPRGKVL 83
Query: 72 GGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVT 131
GGSS IN M++ RG D++ W GW Y+D+ + R+E ++ +
Sbjct: 84 GGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ--------GGQEGW 135
Query: 132 VDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRM 191
+G + + K + N L F +A GF+ D + G P + +G+R
Sbjct: 136 RGTNGPLYVQRGKRD--NPLFHAFVEAGHQAGFEVADDYNGEKQEGFGPMEQTIHNGRRW 193
Query: 192 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK-VNANREVVL 250
A++ +L+ + V++ K K+ + + GVE G+T + A REV++
Sbjct: 194 SAANAYLKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIE--AGRTFSTIRARREVII 248
Query: 251 AANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSS 310
AA+SINS ++L SG+G AA L ++ I LV + PGVG+ L H + + T+ P++
Sbjct: 249 AASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQ-PITL 306
Query: 311 YT-IN-----EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYF-PAQDTL 363
Y+ +N I E+L +TG D ++F K + QY+F P
Sbjct: 307 YSELNLFSKARIGVEWLLFKTG---DGATNHFESAAFVRSKAGVEYPDIQYHFLPV---- 359
Query: 364 FLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYP 423
+ K A + + K+ G V + S +P + P I++
Sbjct: 360 --------------AIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFN 405
Query: 424 LYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYL 483
+ E+D + V++ + F ++ +Q Q+++ I+
Sbjct: 406 YMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQ------PGAHVQTDDEIDNFIREH 459
Query: 484 STTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543
+ HP GT +MG DP+AVV P+ RV G LRV + P + + ++M+ E
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 544 RCATFI 549
+ + I
Sbjct: 520 KASDHI 525
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 135/546 (24%), Positives = 237/546 (43%), Gaps = 57/546 (10%)
Query: 13 SVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVL 71
SV+++E G PD +PA + DWGF E P ++ + + +VL
Sbjct: 28 SVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFSSEPEPH----IRGRSLVTPRGKVL 83
Query: 72 GGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVT 131
GGSS IN M++ RG D++ W GW Y+D+ + R+E ++ +
Sbjct: 84 GGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ--------GGQEGW 135
Query: 132 VDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRM 191
+G + + + ++ N L F +A GF+ D + G P + +G+R
Sbjct: 136 RGTNGPLYVQ--RGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRW 193
Query: 192 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK-VNANREVVL 250
A++ +L+ + V++ K K+ + + GVE G+T + A REV++
Sbjct: 194 SAANAYLKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIE--AGRTFSTIRARREVII 248
Query: 251 AANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSS 310
AA+SINS ++L SG+G AA L ++ I LV + PGVG+ L H + + T+ P++
Sbjct: 249 AASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQ-PITL 306
Query: 311 YT-IN-----EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYF-PAQDTL 363
Y+ +N I E+L +TG D ++F K + QY+F P
Sbjct: 307 YSKLNLFSKARIGVEWLLFKTG---DGATNHFESAAFVRSKAGVEYPDIQYHFLPV---- 359
Query: 364 FLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYP 423
+ K A + + K+ G V + S +P + P I++
Sbjct: 360 --------------AIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFN 405
Query: 424 LYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYL 483
+ E+D + V++ + F ++ +Q Q+++ I+
Sbjct: 406 YMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQ------PGAHVQTDDEIDNFIREH 459
Query: 484 STTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543
+ HP GT +MG DP+AVV P+ RV G LRV + P + + ++M+ E
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 544 RCATFI 549
+ + I
Sbjct: 520 KASGHI 525
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 136/546 (24%), Positives = 236/546 (43%), Gaps = 57/546 (10%)
Query: 13 SVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVL 71
SV+++E G PD +PA + DWGF E P G + + +VL
Sbjct: 28 SVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFSSEPEPHIG----GRSLVTPRGKVL 83
Query: 72 GGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVT 131
GGSS IN M++ RG D++ W GW Y+D+ + R+E ++ +
Sbjct: 84 GGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ--------GGQEGW 135
Query: 132 VDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRM 191
+G + + + ++ N L F +A GF+ D + G P + +G+R
Sbjct: 136 RGTNGPLYVQ--RGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRW 193
Query: 192 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK-VNANREVVL 250
A++ +L+ + V++ K K+ + + GVE G+T + A REV++
Sbjct: 194 SAANAYLKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIE--AGRTFSTIRARREVII 248
Query: 251 AANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSS 310
AA+SINS ++L SG+G AA L ++ I LV + PGVG+ L H + + T+ P++
Sbjct: 249 AASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQ-PITL 306
Query: 311 YT-IN-----EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYF-PAQDTL 363
Y+ +N I E+L +TG D ++F K + QY+F P
Sbjct: 307 YSKLNLFSKARIGVEWLLFKTG---DGATNHFESAAFVRSKAGVEYPDIQYHFLPV---- 359
Query: 364 FLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYP 423
+ K A + + K+ G V + S +P + P I++
Sbjct: 360 --------------AIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFN 405
Query: 424 LYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYL 483
+ E+D + V++ + F ++ +Q Q+++ I+
Sbjct: 406 YMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQ------PGAHVQTDDEIDNFIREH 459
Query: 484 STTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543
+ HP GT +MG DP+AVV P+ RV G LRV + P + + ++M+ E
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 544 RCATFI 549
+ + I
Sbjct: 520 KASDHI 525
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 136/546 (24%), Positives = 236/546 (43%), Gaps = 57/546 (10%)
Query: 13 SVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVL 71
SV+++E G PD +PA + DWGF E P G + + +VL
Sbjct: 28 SVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFSSEPEPHIG----GRSLVTPRGKVL 83
Query: 72 GGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVT 131
GGSS IN M++ RG D++ W GW Y+D+ + R+E ++ +
Sbjct: 84 GGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ--------GGQEGW 135
Query: 132 VDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRM 191
+G + + + ++ N L F +A GF+ D + G P + +G+R
Sbjct: 136 RGTNGPLYVQ--RGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQTIHNGRRW 193
Query: 192 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK-VNANREVVL 250
A++ +L+ + V++ K K+ + + GVE G+T + A REV++
Sbjct: 194 SAANAYLKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIE--AGRTFSTIRARREVII 248
Query: 251 AANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSS 310
AA+SINS ++L SG+G AA L ++ I LV + PGVG+ L H + + T+ P++
Sbjct: 249 AASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQ-PITL 306
Query: 311 YT-IN-----EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYF-PAQDTL 363
Y+ +N I E+L +TG D ++F K + QY+F P
Sbjct: 307 YSKLNLFSKARIGVEWLLFKTG---DGATNHFESAAFVRSKAGVEYPDIQYHFLPV---- 359
Query: 364 FLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYP 423
+ K A + + K+ G V + S +P + P I++
Sbjct: 360 --------------AIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFN 405
Query: 424 LYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYL 483
+ E+D + V++ + F ++ +Q Q+++ I+
Sbjct: 406 YMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQ------PGAHVQTDDEIDNFIREH 459
Query: 484 STTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543
+ HP GT +MG DP+AVV P+ RV G LRV + P + + ++M+ E
Sbjct: 460 VESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGE 519
Query: 544 RCATFI 549
+ + I
Sbjct: 520 KASDHI 525
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 140/556 (25%), Positives = 241/556 (43%), Gaps = 58/556 (10%)
Query: 4 AKLLAQSG-CSVLILEAG-PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDN 61
A L+++G SV+++E G PD +PA + DWGF E P G
Sbjct: 18 AYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFSSEPEPHIG----GR 73
Query: 62 VVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTV 121
+ + +VLGGSS IN M++ RG D++ W GW Y+D+ + R+E ++
Sbjct: 74 SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQ---- 129
Query: 122 RTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPP 181
+ +G + + K + N L F +A GF+ D + G P
Sbjct: 130 ----GGQEGWRGTNGPLYVQRGKRD--NPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPM 183
Query: 182 MYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK 241
+ +G+R A++ +L+ + V++ K K+ + + GVE G+T
Sbjct: 184 EQTIHNGRRWSAANAYLKPALKRPNVKLVKGF-ARKIVLE--GKRAVGVEIE--AGRTFS 238
Query: 242 -VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
+ A REV++AA+SINS ++L SG+G AA L ++ I LV + PGVG+ L H + +
Sbjct: 239 TIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQ 297
Query: 301 YTFTKTPVSSYT-IN-----EIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQ 354
T+ P++ Y+ +N I E+L +TG D ++F K + Q
Sbjct: 298 QECTQ-PITLYSELNLFSKARIGVEWLLFKTG---DGATNHFESAAFVRSKAGVEYPDIQ 353
Query: 355 YYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSND 413
Y+F P + K A + + K+ G V + S +
Sbjct: 354 YHFLPV------------------AIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSAN 395
Query: 414 PTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSE 473
P + P I++ + E+D + V++ + F ++ +Q Q++
Sbjct: 396 PREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQ------PGAHVQTD 449
Query: 474 EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTD 533
+ I+ + HP GT +MG DP+AVV P+ RV G LRV + P +
Sbjct: 450 DEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGN 509
Query: 534 SSAVALMLAERCATFI 549
+ ++M+ E+ + I
Sbjct: 510 LNGPSIMVGEKASDHI 525
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,919,618
Number of Sequences: 539616
Number of extensions: 8648663
Number of successful extensions: 22799
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 22140
Number of HSP's gapped (non-prelim): 330
length of query: 572
length of database: 191,569,459
effective HSP length: 123
effective length of query: 449
effective length of database: 125,196,691
effective search space: 56213314259
effective search space used: 56213314259
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)