Query psy10663
Match_columns 572
No_of_seqs 231 out of 1198
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 15:26:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 6E-107 1E-111 836.7 41.9 539 1-556 71-619 (623)
2 TIGR01810 betA choline dehydro 100.0 1.8E-88 4E-93 733.2 49.8 507 1-553 13-530 (532)
3 PRK02106 choline dehydrogenase 100.0 1.2E-88 2.7E-93 738.3 48.6 506 1-554 19-536 (560)
4 COG2303 BetA Choline dehydroge 100.0 2.5E-78 5.4E-83 647.9 33.6 505 1-552 21-536 (542)
5 PLN02785 Protein HOTHEAD 100.0 1.1E-74 2.4E-79 622.9 38.2 481 1-553 69-580 (587)
6 TIGR02462 pyranose_ox pyranose 100.0 4.1E-55 8.8E-60 461.4 29.7 406 65-553 111-543 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 5.3E-53 1.2E-57 425.0 18.7 278 1-295 14-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 6.1E-35 1.3E-39 261.1 13.2 143 401-545 1-144 (144)
9 PRK12835 3-ketosteroid-delta-1 97.2 0.00096 2.1E-08 73.3 7.9 64 197-262 218-282 (584)
10 PRK12837 3-ketosteroid-delta-1 97.1 0.0014 3E-08 71.1 8.2 64 196-262 178-242 (513)
11 PRK11101 glpA sn-glycerol-3-ph 96.9 0.0082 1.8E-07 65.6 12.4 60 202-265 159-219 (546)
12 PRK07843 3-ketosteroid-delta-1 96.8 0.0029 6.3E-08 69.3 7.8 61 200-263 216-276 (557)
13 PRK12844 3-ketosteroid-delta-1 96.7 0.0044 9.5E-08 67.9 8.0 59 198-259 214-272 (557)
14 PF06039 Mqo: Malate:quinone o 96.3 0.02 4.2E-07 59.3 9.5 67 197-266 187-253 (488)
15 PRK07121 hypothetical protein; 96.3 0.0097 2.1E-07 64.3 7.6 63 198-262 183-245 (492)
16 PRK08274 tricarballylate dehyd 96.3 0.011 2.4E-07 63.4 7.9 64 202-268 141-204 (466)
17 PRK12845 3-ketosteroid-delta-1 96.3 0.01 2.3E-07 64.9 7.6 55 202-259 227-281 (564)
18 PF00890 FAD_binding_2: FAD bi 96.1 0.014 3E-07 61.7 7.4 57 202-262 151-208 (417)
19 PRK06134 putative FAD-binding 95.9 0.023 4.9E-07 62.7 8.0 59 201-262 226-284 (581)
20 KOG2404|consensus 95.8 0.0093 2E-07 58.1 4.1 50 205-257 158-207 (477)
21 PRK12843 putative FAD-binding 95.6 0.031 6.7E-07 61.6 7.8 55 202-259 231-285 (578)
22 PRK12839 hypothetical protein; 95.6 0.034 7.4E-07 61.0 7.8 56 202-259 224-279 (572)
23 PRK06175 L-aspartate oxidase; 95.5 0.037 8E-07 58.7 7.4 57 197-257 134-190 (433)
24 PRK05675 sdhA succinate dehydr 95.4 0.041 9E-07 60.4 7.7 54 202-257 136-190 (570)
25 PLN02815 L-aspartate oxidase 95.4 0.032 7E-07 61.3 6.8 60 197-257 161-223 (594)
26 TIGR01816 sdhA_forward succina 95.3 0.045 9.7E-07 60.1 7.7 55 200-257 127-182 (565)
27 TIGR01813 flavo_cyto_c flavocy 95.3 0.041 8.9E-07 58.5 7.2 58 198-257 136-193 (439)
28 PRK06263 sdhA succinate dehydr 95.3 0.043 9.3E-07 60.1 7.4 54 202-257 144-198 (543)
29 PRK07573 sdhA succinate dehydr 95.2 0.043 9.3E-07 61.1 7.0 53 202-257 180-233 (640)
30 TIGR01811 sdhA_Bsu succinate d 95.0 0.07 1.5E-06 59.0 8.2 52 204-257 145-197 (603)
31 PRK09078 sdhA succinate dehydr 95.0 0.057 1.2E-06 59.7 7.4 54 202-257 159-213 (598)
32 PRK12842 putative succinate de 95.0 0.074 1.6E-06 58.6 8.2 58 202-262 224-281 (574)
33 PRK07395 L-aspartate oxidase; 95.0 0.039 8.5E-07 60.3 6.0 54 202-257 145-198 (553)
34 PRK08958 sdhA succinate dehydr 94.9 0.072 1.6E-06 58.8 7.8 54 202-257 153-207 (588)
35 COG0029 NadB Aspartate oxidase 94.8 0.041 8.8E-07 57.2 5.0 59 196-256 138-196 (518)
36 PRK09077 L-aspartate oxidase; 94.7 0.079 1.7E-06 57.9 7.5 59 198-257 145-208 (536)
37 PRK06452 sdhA succinate dehydr 94.6 0.086 1.9E-06 58.0 7.5 52 202-256 146-198 (566)
38 PRK08626 fumarate reductase fl 94.6 0.072 1.6E-06 59.5 6.9 53 202-257 168-221 (657)
39 PF01266 DAO: FAD dependent ox 94.6 0.063 1.4E-06 54.9 6.1 60 197-265 152-211 (358)
40 PTZ00139 Succinate dehydrogena 94.5 0.085 1.8E-06 58.5 7.2 54 202-257 176-230 (617)
41 PRK12834 putative FAD-binding 94.5 0.12 2.7E-06 56.5 8.3 56 204-262 164-234 (549)
42 PLN00128 Succinate dehydrogena 94.4 0.096 2.1E-06 58.2 7.2 54 202-257 197-251 (635)
43 PRK06481 fumarate reductase fl 94.3 0.097 2.1E-06 56.7 7.1 58 202-262 200-258 (506)
44 PRK13977 myosin-cross-reactive 94.2 0.09 1.9E-06 56.7 6.4 56 202-257 236-294 (576)
45 PTZ00306 NADH-dependent fumara 94.1 0.099 2.1E-06 62.4 7.2 54 205-259 560-623 (1167)
46 PRK08275 putative oxidoreducta 94.1 0.11 2.4E-06 56.9 7.0 57 198-256 143-200 (554)
47 TIGR01176 fum_red_Fp fumarate 94.0 0.16 3.4E-06 56.0 7.9 54 201-257 142-196 (580)
48 PRK09231 fumarate reductase fl 94.0 0.17 3.7E-06 55.8 8.1 54 201-257 143-197 (582)
49 TIGR01812 sdhA_frdA_Gneg succi 93.8 0.15 3.2E-06 56.2 7.2 53 202-257 139-192 (566)
50 PRK07803 sdhA succinate dehydr 93.7 0.16 3.4E-06 56.6 7.3 49 206-257 165-214 (626)
51 TIGR03378 glycerol3P_GlpB glyc 93.6 0.15 3.2E-06 53.2 6.4 58 202-264 273-330 (419)
52 TIGR03377 glycerol3P_GlpA glyc 93.6 0.2 4.3E-06 54.5 7.7 60 202-265 138-198 (516)
53 COG0579 Predicted dehydrogenas 93.5 0.4 8.7E-06 50.0 9.4 65 196-268 158-222 (429)
54 PRK05945 sdhA succinate dehydr 93.5 0.21 4.6E-06 55.1 7.8 53 202-257 145-198 (575)
55 PRK08071 L-aspartate oxidase; 93.4 0.15 3.3E-06 55.2 6.5 50 205-257 142-191 (510)
56 PRK07512 L-aspartate oxidase; 93.4 0.14 3E-06 55.6 6.1 55 199-257 144-198 (513)
57 PRK06069 sdhA succinate dehydr 93.4 0.22 4.8E-06 55.0 7.7 54 201-257 147-201 (577)
58 PRK08205 sdhA succinate dehydr 93.3 0.19 4.1E-06 55.5 7.1 59 198-257 146-207 (583)
59 PRK07057 sdhA succinate dehydr 93.1 0.22 4.8E-06 55.0 7.3 54 202-257 158-212 (591)
60 PRK06854 adenylylsulfate reduc 93.0 0.28 6E-06 54.4 7.9 52 202-256 143-195 (608)
61 TIGR00551 nadB L-aspartate oxi 93.0 0.24 5.2E-06 53.4 7.1 51 203-257 140-190 (488)
62 PLN02464 glycerol-3-phosphate 92.7 0.24 5.2E-06 55.1 6.8 62 202-265 242-304 (627)
63 TIGR02061 aprA adenosine phosp 92.5 0.27 5.9E-06 54.3 6.9 52 204-256 138-191 (614)
64 TIGR02485 CobZ_N-term precorri 92.5 0.32 6.9E-06 51.6 7.3 58 202-263 133-190 (432)
65 PRK08641 sdhA succinate dehydr 92.5 0.27 5.8E-06 54.3 6.9 51 205-257 150-201 (589)
66 PF13738 Pyr_redox_3: Pyridine 92.5 0.11 2.4E-06 48.6 3.2 61 196-264 86-146 (203)
67 PRK05257 malate:quinone oxidor 92.2 0.88 1.9E-05 49.0 10.1 66 197-266 189-255 (494)
68 COG0578 GlpA Glycerol-3-phosph 92.0 0.19 4.1E-06 53.7 4.7 73 186-266 161-234 (532)
69 PRK13339 malate:quinone oxidor 91.7 0.75 1.6E-05 49.4 8.9 67 196-266 189-256 (497)
70 PTZ00383 malate:quinone oxidor 90.9 0.87 1.9E-05 49.0 8.4 53 206-267 231-283 (497)
71 TIGR01320 mal_quin_oxido malat 90.8 1.3 2.7E-05 47.8 9.6 65 197-266 184-249 (483)
72 PRK13800 putative oxidoreducta 90.5 0.73 1.6E-05 53.7 7.9 51 204-257 155-206 (897)
73 PRK07804 L-aspartate oxidase; 90.5 0.61 1.3E-05 51.0 7.0 56 200-257 152-211 (541)
74 PRK05329 anaerobic glycerol-3- 90.3 0.67 1.5E-05 48.7 6.7 60 197-261 264-323 (422)
75 PF01134 GIDA: Glucose inhibit 89.2 0.73 1.6E-05 47.6 5.8 53 201-261 105-157 (392)
76 PLN02661 Putative thiazole syn 88.3 1.3 2.7E-05 45.1 6.7 57 197-256 178-244 (357)
77 TIGR02730 carot_isom carotene 87.8 0.86 1.9E-05 49.3 5.7 56 200-262 237-292 (493)
78 PRK04176 ribulose-1,5-biphosph 87.7 1.2 2.5E-05 43.6 6.0 52 202-255 114-172 (257)
79 TIGR02352 thiamin_ThiO glycine 87.4 1 2.3E-05 45.6 5.8 50 202-260 147-196 (337)
80 TIGR02733 desat_CrtD C-3',4' d 87.4 1.2 2.6E-05 48.1 6.5 57 202-261 242-299 (492)
81 PF12831 FAD_oxidored: FAD dep 86.5 0.21 4.5E-06 52.9 0.0 62 198-266 96-157 (428)
82 TIGR02734 crtI_fam phytoene de 85.4 1.5 3.3E-05 47.4 6.1 54 202-262 229-282 (502)
83 COG1053 SdhA Succinate dehydro 85.3 1.9 4.2E-05 47.1 6.6 88 201-296 148-241 (562)
84 KOG0042|consensus 85.0 0.4 8.6E-06 50.5 1.1 68 187-259 222-290 (680)
85 TIGR02731 phytoene_desat phyto 84.6 1.7 3.7E-05 46.4 5.9 50 203-254 224-274 (453)
86 KOG4254|consensus 84.6 0.95 2E-05 46.7 3.6 61 196-263 268-328 (561)
87 PRK06185 hypothetical protein; 84.4 3.2 6.8E-05 43.5 7.7 51 201-255 118-168 (407)
88 PF13434 K_oxygenase: L-lysine 84.0 2 4.4E-05 43.9 5.8 62 196-260 99-161 (341)
89 PRK13369 glycerol-3-phosphate 83.4 2.6 5.7E-05 45.7 6.7 56 202-262 165-220 (502)
90 TIGR01373 soxB sarcosine oxida 83.1 2.7 5.9E-05 44.1 6.6 56 202-265 193-248 (407)
91 PRK00711 D-amino acid dehydrog 83.1 3.4 7.4E-05 43.4 7.3 51 202-261 211-261 (416)
92 PRK07208 hypothetical protein; 82.5 3.5 7.6E-05 44.3 7.3 58 202-261 228-285 (479)
93 PRK12266 glpD glycerol-3-phosp 82.4 3.1 6.7E-05 45.2 6.8 56 202-262 165-221 (508)
94 COG2081 Predicted flavoprotein 80.6 5.7 0.00012 40.8 7.3 90 153-260 82-171 (408)
95 TIGR02732 zeta_caro_desat caro 80.4 3.4 7.3E-05 44.4 6.2 57 203-261 230-289 (474)
96 TIGR03862 flavo_PP4765 unchara 80.3 5.4 0.00012 41.2 7.3 88 154-260 58-145 (376)
97 TIGR00292 thiazole biosynthesi 79.8 4.7 0.0001 39.3 6.4 62 202-264 110-179 (254)
98 PLN02985 squalene monooxygenas 79.8 5.8 0.00013 43.1 7.7 60 196-259 152-211 (514)
99 COG3634 AhpF Alkyl hydroperoxi 79.2 5.7 0.00012 39.8 6.6 61 201-264 399-460 (520)
100 PRK05192 tRNA uridine 5-carbox 78.7 4.8 0.00011 44.2 6.6 49 201-257 110-158 (618)
101 TIGR01292 TRX_reduct thioredox 76.5 9.1 0.0002 37.9 7.6 62 199-264 184-246 (300)
102 PRK11728 hydroxyglutarate oxid 76.1 8 0.00017 40.3 7.3 55 202-266 159-213 (393)
103 COG1233 Phytoene dehydrogenase 75.2 4 8.7E-05 44.0 4.9 58 198-263 230-287 (487)
104 PF03486 HI0933_like: HI0933-l 75.1 4.2 9.1E-05 42.7 4.8 70 202-280 119-188 (409)
105 PRK15317 alkyl hydroperoxide r 74.7 9.4 0.0002 41.5 7.6 59 203-264 398-457 (517)
106 PLN02487 zeta-carotene desatur 74.6 5.8 0.00012 43.6 5.9 57 203-261 306-365 (569)
107 TIGR01377 soxA_mon sarcosine o 74.5 7.7 0.00017 40.1 6.7 53 200-262 153-205 (380)
108 PRK12409 D-amino acid dehydrog 74.4 7.7 0.00017 40.7 6.8 58 200-262 205-263 (410)
109 PRK10157 putative oxidoreducta 73.8 10 0.00022 40.1 7.5 51 196-254 112-162 (428)
110 TIGR00136 gidA glucose-inhibit 73.2 7.7 0.00017 42.6 6.3 55 201-262 106-160 (617)
111 TIGR03197 MnmC_Cterm tRNA U-34 72.8 9.7 0.00021 39.5 7.0 51 200-260 143-193 (381)
112 PRK06126 hypothetical protein; 72.5 9.2 0.0002 41.9 7.0 51 202-256 137-188 (545)
113 PLN02172 flavin-containing mon 72.4 5.3 0.00011 42.7 4.9 67 195-265 114-182 (461)
114 PRK08401 L-aspartate oxidase; 72.0 8.3 0.00018 41.3 6.4 51 198-257 126-176 (466)
115 PF13450 NAD_binding_8: NAD(P) 71.3 1.4 3E-05 33.2 0.1 21 2-23 11-31 (68)
116 COG3573 Predicted oxidoreducta 70.9 12 0.00026 37.4 6.4 64 198-264 159-236 (552)
117 PRK11259 solA N-methyltryptoph 70.8 8.6 0.00019 39.6 6.0 50 202-261 159-208 (376)
118 TIGR03140 AhpF alkyl hydropero 67.5 16 0.00035 39.6 7.5 56 204-262 400-456 (515)
119 COG3075 GlpB Anaerobic glycero 66.7 6.2 0.00013 39.3 3.5 64 188-259 257-320 (421)
120 PRK10015 oxidoreductase; Provi 65.2 15 0.00032 39.0 6.4 51 196-254 112-162 (429)
121 PRK10262 thioredoxin reductase 63.8 26 0.00057 35.2 7.8 59 200-261 193-253 (321)
122 PF13434 K_oxygenase: L-lysine 62.6 19 0.00041 36.8 6.4 50 201-253 288-338 (341)
123 PRK07818 dihydrolipoamide dehy 62.4 17 0.00037 38.9 6.4 60 197-260 218-277 (466)
124 PRK12810 gltD glutamate syntha 61.6 14 0.0003 39.7 5.5 60 203-265 340-410 (471)
125 PLN02612 phytoene desaturase 61.3 14 0.00029 40.8 5.5 45 204-254 320-364 (567)
126 PRK07233 hypothetical protein; 60.2 14 0.00029 39.0 5.1 52 202-261 208-259 (434)
127 PRK06327 dihydrolipoamide dehy 59.9 16 0.00035 39.2 5.7 56 202-261 234-289 (475)
128 PRK07364 2-octaprenyl-6-methox 59.4 25 0.00054 36.8 7.0 56 196-256 126-181 (415)
129 PRK06183 mhpA 3-(3-hydroxyphen 59.0 29 0.00062 38.0 7.5 54 203-260 125-178 (538)
130 TIGR01316 gltA glutamate synth 58.4 24 0.00052 37.6 6.6 57 203-261 320-392 (449)
131 TIGR03364 HpnW_proposed FAD de 58.2 16 0.00035 37.5 5.2 43 204-260 158-200 (365)
132 PRK12831 putative oxidoreducta 57.8 24 0.00053 37.7 6.6 57 203-261 329-401 (464)
133 TIGR01350 lipoamide_DH dihydro 56.8 26 0.00056 37.4 6.6 54 200-259 219-272 (461)
134 TIGR02028 ChlP geranylgeranyl 56.7 25 0.00055 36.7 6.4 58 195-254 96-158 (398)
135 PF01494 FAD_binding_3: FAD bi 56.1 25 0.00054 35.5 6.2 60 195-258 114-173 (356)
136 COG0654 UbiH 2-polyprenyl-6-me 54.8 29 0.00064 36.0 6.5 54 197-258 110-163 (387)
137 COG3486 IucD Lysine/ornithine 54.6 25 0.00054 36.3 5.5 56 203-261 289-346 (436)
138 PRK08244 hypothetical protein; 54.1 29 0.00064 37.4 6.5 56 196-256 104-159 (493)
139 PRK07045 putative monooxygenas 53.2 35 0.00076 35.4 6.7 54 197-257 112-165 (388)
140 PRK04965 NADH:flavorubredoxin 52.7 36 0.00079 35.2 6.7 62 198-267 189-250 (377)
141 TIGR01372 soxA sarcosine oxida 52.3 32 0.00069 40.7 6.9 61 202-266 361-421 (985)
142 TIGR02032 GG-red-SF geranylger 50.9 36 0.00079 33.3 6.2 52 197-255 96-147 (295)
143 COG0644 FixC Dehydrogenases (f 50.4 29 0.00063 36.2 5.6 52 196-254 99-150 (396)
144 TIGR01984 UbiH 2-polyprenyl-6- 49.8 39 0.00084 34.9 6.4 56 192-255 106-161 (382)
145 PRK09564 coenzyme A disulfide 49.8 37 0.0008 36.0 6.4 61 197-266 196-256 (444)
146 PF06100 Strep_67kDa_ant: Stre 48.3 61 0.0013 34.6 7.3 54 202-256 217-274 (500)
147 TIGR03329 Phn_aa_oxid putative 47.9 27 0.00059 37.3 5.0 45 201-255 192-236 (460)
148 PRK12845 3-ketosteroid-delta-1 47.6 30 0.00065 38.1 5.3 61 486-551 498-563 (564)
149 TIGR01318 gltD_gamma_fam gluta 47.3 33 0.00071 36.8 5.5 61 203-265 331-408 (467)
150 TIGR02053 MerA mercuric reduct 46.9 36 0.00077 36.4 5.7 58 197-259 212-269 (463)
151 KOG2852|consensus 46.5 25 0.00053 34.6 3.8 65 197-266 153-217 (380)
152 TIGR01988 Ubi-OHases Ubiquinon 45.6 48 0.001 34.1 6.4 55 193-255 108-162 (385)
153 COG0445 GidA Flavin-dependent 45.3 14 0.00031 39.5 2.2 54 201-261 110-163 (621)
154 PRK12770 putative glutamate sy 45.1 39 0.00085 34.6 5.5 58 202-263 220-293 (352)
155 COG0644 FixC Dehydrogenases (f 44.5 8.5 0.00018 40.2 0.5 22 1-23 17-38 (396)
156 PRK08773 2-octaprenyl-3-methyl 43.7 52 0.0011 34.1 6.3 50 198-255 119-168 (392)
157 PRK12839 hypothetical protein; 43.6 36 0.00078 37.5 5.2 63 486-553 501-568 (572)
158 TIGR00275 flavoprotein, HI0933 43.4 39 0.00086 35.3 5.3 54 197-259 110-163 (400)
159 PRK14989 nitrite reductase sub 43.3 50 0.0011 38.3 6.5 64 197-266 192-255 (847)
160 COG1635 THI4 Ribulose 1,5-bisp 43.3 8.4 0.00018 36.2 0.2 47 205-253 122-175 (262)
161 PRK05976 dihydrolipoamide dehy 43.1 47 0.001 35.6 6.0 60 198-261 227-286 (472)
162 PRK08163 salicylate hydroxylas 42.9 47 0.001 34.5 5.8 57 194-258 112-168 (396)
163 PRK06370 mercuric reductase; V 42.3 53 0.0012 35.1 6.2 58 197-259 217-274 (463)
164 PTZ00363 rab-GDP dissociation 42.3 49 0.0011 35.1 5.8 47 203-255 243-289 (443)
165 PF00070 Pyr_redox: Pyridine n 42.1 51 0.0011 25.2 4.5 34 197-233 45-78 (80)
166 PRK09754 phenylpropionate diox 41.8 65 0.0014 33.5 6.6 62 196-266 190-251 (396)
167 PRK08243 4-hydroxybenzoate 3-m 41.7 48 0.001 34.5 5.6 50 203-257 114-163 (392)
168 PRK11749 dihydropyrimidine deh 41.6 41 0.00089 35.9 5.2 56 203-261 322-392 (457)
169 PRK06467 dihydrolipoamide dehy 41.5 52 0.0011 35.3 5.9 55 202-261 225-279 (471)
170 KOG2311|consensus 41.4 31 0.00067 36.4 3.8 55 202-261 135-191 (679)
171 TIGR02374 nitri_red_nirB nitri 41.3 49 0.0011 38.1 6.0 62 197-266 187-248 (785)
172 PRK01747 mnmC bifunctional tRN 40.8 61 0.0013 36.5 6.6 36 512-553 599-634 (662)
173 PF00743 FMO-like: Flavin-bind 40.3 29 0.00062 37.9 3.7 66 195-262 87-156 (531)
174 PRK05732 2-octaprenyl-6-methox 40.2 66 0.0014 33.3 6.4 51 197-255 118-168 (395)
175 COG0492 TrxB Thioredoxin reduc 40.1 97 0.0021 31.1 7.2 65 196-265 183-247 (305)
176 COG1233 Phytoene dehydrogenase 39.8 10 0.00022 41.0 0.1 29 513-543 447-475 (487)
177 PRK12769 putative oxidoreducta 39.6 41 0.0009 37.8 5.0 53 203-257 517-585 (654)
178 PF01593 Amino_oxidase: Flavin 38.9 46 0.001 34.4 5.1 47 205-259 222-268 (450)
179 PRK06834 hypothetical protein; 38.6 67 0.0015 34.6 6.2 52 196-255 104-155 (488)
180 PRK12842 putative succinate de 38.6 54 0.0012 36.2 5.6 64 486-554 500-568 (574)
181 PRK12809 putative oxidoreducta 38.2 53 0.0012 36.8 5.6 53 203-257 500-568 (639)
182 PRK06416 dihydrolipoamide dehy 38.0 70 0.0015 34.1 6.3 57 200-261 221-277 (462)
183 PRK11445 putative oxidoreducta 37.6 90 0.002 31.9 6.8 56 196-257 103-158 (351)
184 TIGR03467 HpnE squalene-associ 37.6 40 0.00087 35.1 4.3 50 204-260 209-258 (419)
185 KOG2853|consensus 37.5 70 0.0015 32.3 5.4 57 209-267 259-330 (509)
186 PRK12844 3-ketosteroid-delta-1 37.4 60 0.0013 35.7 5.7 67 486-557 483-554 (557)
187 PRK12409 D-amino acid dehydrog 37.2 12 0.00026 39.2 0.3 52 490-553 356-407 (410)
188 PRK07190 hypothetical protein; 37.2 66 0.0014 34.7 5.9 52 196-255 113-164 (487)
189 PRK10157 putative oxidoreducta 37.1 13 0.00029 39.2 0.6 22 1-23 19-40 (428)
190 PRK06115 dihydrolipoamide dehy 36.8 68 0.0015 34.3 5.9 61 197-261 220-281 (466)
191 PF07992 Pyr_redox_2: Pyridine 36.0 56 0.0012 29.9 4.6 49 203-255 69-121 (201)
192 COG1252 Ndh NADH dehydrogenase 36.0 24 0.00053 36.8 2.2 50 503-555 279-333 (405)
193 TIGR03467 HpnE squalene-associ 35.9 16 0.00035 38.1 1.0 22 1-23 1-22 (419)
194 TIGR03169 Nterm_to_SelD pyridi 35.9 41 0.00089 34.5 4.0 50 504-553 260-310 (364)
195 TIGR02734 crtI_fam phytoene de 35.7 68 0.0015 34.6 5.8 42 512-557 455-496 (502)
196 KOG1298|consensus 35.3 48 0.001 34.0 4.0 53 201-257 157-209 (509)
197 PRK06847 hypothetical protein; 35.0 89 0.0019 32.0 6.4 57 196-260 111-167 (375)
198 PRK10015 oxidoreductase; Provi 34.3 16 0.00035 38.6 0.7 22 1-23 19-40 (429)
199 PRK12843 putative FAD-binding 34.3 59 0.0013 35.9 5.1 64 486-554 505-573 (578)
200 PRK13512 coenzyme A disulfide 34.2 71 0.0015 33.8 5.5 47 203-255 69-116 (438)
201 PRK12837 3-ketosteroid-delta-1 34.0 63 0.0014 35.1 5.1 62 486-552 445-511 (513)
202 PRK07538 hypothetical protein; 33.8 89 0.0019 32.7 6.2 50 205-258 117-166 (413)
203 PF04820 Trp_halogenase: Trypt 33.2 68 0.0015 34.2 5.2 54 194-254 156-209 (454)
204 COG1252 Ndh NADH dehydrogenase 33.1 61 0.0013 33.9 4.6 58 197-265 214-271 (405)
205 COG0665 DadA Glycine/D-amino a 33.1 88 0.0019 32.2 6.0 54 489-553 314-368 (387)
206 PRK05249 soluble pyridine nucl 33.1 65 0.0014 34.3 5.1 56 198-261 222-277 (461)
207 PRK12771 putative glutamate sy 33.0 88 0.0019 34.4 6.2 56 204-262 317-386 (564)
208 COG2509 Uncharacterized FAD-de 32.8 1.5E+02 0.0034 31.2 7.3 51 203-260 184-234 (486)
209 PF00890 FAD_binding_2: FAD bi 32.5 14 0.00029 38.9 -0.3 34 487-525 369-402 (417)
210 PRK08020 ubiF 2-octaprenyl-3-m 32.4 1E+02 0.0023 31.8 6.4 49 201-258 122-170 (391)
211 PRK07608 ubiquinone biosynthes 32.4 96 0.0021 32.0 6.1 51 196-255 116-166 (388)
212 TIGR02023 BchP-ChlP geranylger 32.4 97 0.0021 32.1 6.1 55 195-254 95-153 (388)
213 PTZ00318 NADH dehydrogenase-li 32.3 52 0.0011 34.7 4.1 49 505-554 298-348 (424)
214 PTZ00363 rab-GDP dissociation 32.1 24 0.00051 37.5 1.5 22 1-23 18-39 (443)
215 PRK07333 2-octaprenyl-6-methox 32.1 1E+02 0.0022 32.0 6.3 53 196-257 115-167 (403)
216 KOG2820|consensus 32.0 92 0.002 31.5 5.3 59 198-262 159-217 (399)
217 TIGR03385 CoA_CoA_reduc CoA-di 31.9 98 0.0021 32.6 6.1 60 197-266 184-243 (427)
218 PF01946 Thi4: Thi4 family; PD 31.6 2.2E+02 0.0049 27.0 7.5 53 198-253 103-162 (230)
219 PRK12779 putative bifunctional 31.5 1.2E+02 0.0025 35.8 7.0 55 204-259 496-565 (944)
220 PRK12775 putative trifunctiona 31.4 97 0.0021 36.8 6.4 58 203-262 620-692 (1006)
221 PRK06134 putative FAD-binding 31.4 90 0.002 34.5 5.9 64 486-554 504-572 (581)
222 PRK06292 dihydrolipoamide dehy 31.1 1.1E+02 0.0023 32.6 6.3 57 198-260 216-272 (460)
223 PF01946 Thi4: Thi4 family; PD 31.1 11 0.00024 35.5 -1.1 20 1-21 31-50 (230)
224 PF13807 GNVR: G-rich domain o 31.0 88 0.0019 24.3 4.2 32 515-546 38-69 (82)
225 COG2072 TrkA Predicted flavopr 30.8 81 0.0018 33.5 5.2 55 205-263 97-151 (443)
226 PRK08132 FAD-dependent oxidore 30.7 1.3E+02 0.0029 32.8 7.1 57 196-257 129-186 (547)
227 PRK09126 hypothetical protein; 30.6 1.1E+02 0.0025 31.5 6.3 50 197-254 116-165 (392)
228 PRK13984 putative oxidoreducta 30.2 1E+02 0.0022 34.3 6.1 56 204-262 474-544 (604)
229 PLN02576 protoporphyrinogen ox 29.5 1.1E+02 0.0024 32.8 6.2 52 207-262 252-303 (496)
230 PF01593 Amino_oxidase: Flavin 28.8 19 0.00041 37.4 0.1 33 516-550 418-450 (450)
231 PRK06912 acoL dihydrolipoamide 28.5 89 0.0019 33.3 5.1 53 200-259 219-271 (458)
232 KOG1298|consensus 28.3 22 0.00047 36.4 0.3 23 1-24 59-81 (509)
233 PRK06116 glutathione reductase 28.3 1.1E+02 0.0024 32.5 5.8 54 200-260 216-269 (450)
234 PRK07845 flavoprotein disulfid 28.1 1.1E+02 0.0024 32.6 5.8 62 197-266 223-286 (466)
235 PF01266 DAO: FAD dependent ox 27.5 19 0.00041 36.4 -0.2 32 511-548 327-358 (358)
236 PRK06184 hypothetical protein; 27.4 1.5E+02 0.0033 32.0 6.7 50 202-256 119-168 (502)
237 PRK06475 salicylate hydroxylas 27.4 1.2E+02 0.0025 31.6 5.7 56 197-258 113-168 (400)
238 TIGR03197 MnmC_Cterm tRNA U-34 26.6 30 0.00066 35.8 1.1 32 515-552 331-362 (381)
239 PRK12778 putative bifunctional 26.5 1.1E+02 0.0023 35.2 5.6 56 203-260 619-690 (752)
240 TIGR03143 AhpF_homolog putativ 26.5 1.9E+02 0.0041 31.8 7.3 57 202-262 189-252 (555)
241 PRK12835 3-ketosteroid-delta-1 25.9 1.1E+02 0.0024 33.9 5.3 67 486-557 503-574 (584)
242 PRK14727 putative mercuric red 25.9 1E+02 0.0022 33.1 5.1 56 197-261 233-288 (479)
243 PRK09564 coenzyme A disulfide 25.9 1E+02 0.0022 32.6 5.0 47 203-255 67-114 (444)
244 COG0562 Glf UDP-galactopyranos 25.6 23 0.00051 35.3 0.0 22 1-23 15-36 (374)
245 PF13454 NAD_binding_9: FAD-NA 25.1 2.2E+02 0.0047 25.1 6.3 36 211-254 120-155 (156)
246 PRK08849 2-octaprenyl-3-methyl 25.0 1.8E+02 0.0038 30.1 6.5 51 199-258 118-168 (384)
247 COG1249 Lpd Pyruvate/2-oxoglut 24.8 1.6E+02 0.0036 31.3 6.2 51 202-258 224-274 (454)
248 COG3573 Predicted oxidoreducta 24.7 30 0.00065 34.7 0.6 22 1-23 19-40 (552)
249 TIGR00292 thiazole biosynthesi 24.5 27 0.00059 34.0 0.3 20 2-22 36-55 (254)
250 TIGR01438 TGR thioredoxin and 24.5 1.2E+02 0.0026 32.7 5.2 60 197-262 225-285 (484)
251 PRK07121 hypothetical protein; 24.4 97 0.0021 33.4 4.6 62 487-552 425-490 (492)
252 TIGR03329 Phn_aa_oxid putative 24.4 30 0.00066 36.9 0.6 55 487-552 340-394 (460)
253 TIGR02733 desat_CrtD C-3',4' d 24.4 29 0.00063 37.4 0.5 35 514-552 457-491 (492)
254 PLN00093 geranylgeranyl diphos 23.9 1.5E+02 0.0032 31.6 5.7 59 194-254 134-197 (450)
255 TIGR01421 gluta_reduc_1 glutat 23.3 1.4E+02 0.003 31.8 5.4 54 202-261 217-270 (450)
256 TIGR01423 trypano_reduc trypan 23.2 1.3E+02 0.0028 32.4 5.2 58 197-261 236-293 (486)
257 TIGR03364 HpnW_proposed FAD de 23.0 30 0.00065 35.5 0.3 19 2-21 15-33 (365)
258 PRK08010 pyridine nucleotide-d 22.6 1.3E+02 0.0027 31.9 4.9 55 198-261 205-259 (441)
259 PRK09897 hypothetical protein; 22.5 2.2E+02 0.0047 31.1 6.7 44 510-554 478-521 (534)
260 PRK05714 2-octaprenyl-3-methyl 22.4 1.7E+02 0.0037 30.4 5.9 45 202-254 122-166 (405)
261 PRK11259 solA N-methyltryptoph 22.3 32 0.00069 35.4 0.3 37 511-553 325-361 (376)
262 TIGR01377 soxA_mon sarcosine o 22.2 31 0.00068 35.5 0.2 37 511-553 325-361 (380)
263 COG3349 Uncharacterized conser 22.1 31 0.00068 36.7 0.2 55 203-263 226-282 (485)
264 PLN02507 glutathione reductase 21.9 1.7E+02 0.0037 31.6 5.8 56 198-261 250-305 (499)
265 TIGR00031 UDP-GALP_mutase UDP- 21.8 35 0.00076 35.4 0.5 26 196-221 199-224 (377)
266 PLN02268 probable polyamine ox 21.7 37 0.0008 35.9 0.6 22 1-23 14-35 (435)
267 PTZ00318 NADH dehydrogenase-li 21.6 1.7E+02 0.0037 30.8 5.6 56 197-265 233-288 (424)
268 PRK07494 2-octaprenyl-6-methox 21.3 2.1E+02 0.0046 29.4 6.3 50 196-254 116-165 (388)
269 PRK08850 2-octaprenyl-6-methox 21.3 2.4E+02 0.0051 29.4 6.6 52 197-257 117-168 (405)
270 PRK06567 putative bifunctional 21.3 1.4E+02 0.003 35.1 5.0 56 203-260 651-732 (1028)
271 PLN02676 polyamine oxidase 21.1 1.4E+02 0.003 32.2 4.9 39 207-253 245-283 (487)
272 PRK15317 alkyl hydroperoxide r 21.1 1.7E+02 0.0037 31.7 5.7 51 196-254 270-320 (517)
273 TIGR02730 carot_isom carotene 20.9 1.1E+02 0.0023 33.1 4.0 36 513-552 456-491 (493)
274 COG2907 Predicted NAD/FAD-bind 20.9 1.6E+02 0.0034 30.1 4.6 54 196-257 221-274 (447)
275 TIGR02032 GG-red-SF geranylger 20.8 37 0.0008 33.3 0.4 22 1-23 14-35 (295)
276 KOG2495|consensus 20.8 85 0.0018 32.8 2.9 57 487-550 328-389 (491)
277 PRK08013 oxidoreductase; Provi 20.6 2.1E+02 0.0045 29.8 6.0 52 197-257 117-168 (400)
278 TIGR00562 proto_IX_ox protopor 20.5 1.7E+02 0.0036 31.0 5.4 47 207-261 238-284 (462)
279 PRK00711 D-amino acid dehydrog 20.4 36 0.00078 35.6 0.2 54 488-553 350-403 (416)
280 PRK11883 protoporphyrinogen ox 20.3 1.9E+02 0.0041 30.5 5.7 45 208-260 235-279 (451)
281 PRK06617 2-octaprenyl-6-methox 20.2 2.6E+02 0.0056 28.7 6.6 50 196-254 109-158 (374)
282 PLN02697 lycopene epsilon cycl 20.2 2.2E+02 0.0047 31.1 6.1 51 202-261 202-252 (529)
No 1
>KOG1238|consensus
Probab=100.00 E-value=5.8e-107 Score=836.73 Aligned_cols=539 Identities=28% Similarity=0.461 Sum_probs=482.6
Q ss_pred CccccccCCCCCeEEEEcccCCCCCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhccc
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDM 80 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~~ 80 (572)
|+|+||||++..||||||||+..+...++|..... ++.+.++|.|.++|+...|+++.++.+.|+|||+|||||.+|+|
T Consensus 71 vlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~-~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m 149 (623)
T KOG1238|consen 71 VLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAAN-LQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAM 149 (623)
T ss_pred HHHHhhccCCCceEEEEecCCCCcccccchHHHHH-hccccccccCcCccChhhhhhhcCCceecCccceecccccccce
Confidence 68999999999999999999998777788855555 88899999999999999999999999999999999999999999
Q ss_pred eeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHHHH
Q psy10663 81 IHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFE 160 (572)
Q Consensus 81 ~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a~~ 160 (572)
+|.|+++.|||+|++.|+++|+|+++.|||+|+|+...+.... .+ +|+..||+.++...+ .++ ....|.++..
T Consensus 150 ~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~---~~--y~~~~g~~~ve~~~~-~~~-~~~~~~~ag~ 222 (623)
T KOG1238|consen 150 FYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPEL---TP--YHGAGGPLLVEAGVY-PNN-LFTAFHRAGT 222 (623)
T ss_pred EEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCccc---Cc--ccccCCcceeccccc-cCc-hhhHhHHhHH
Confidence 9999999999999999999999999999999999998765543 45 899999999998888 778 9999999999
Q ss_pred HcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcC-CCCeEEeccceEEEEEEeCCCCEEEEEEEEcCC-Cc
Q psy10663 161 DIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKD-KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GK 238 (572)
Q Consensus 161 ~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~-~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~-g~ 238 (572)
++|.+..|+ |+..+.|+...+.++++|.|+|+..+|+.++.. |+||.|..++.|++|.+|+.+.++.||++. .+ |+
T Consensus 223 e~G~~~~D~-nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~-~~~~~ 300 (623)
T KOG1238|consen 223 EIGGSIFDR-NGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFV-RDGGK 300 (623)
T ss_pred hcCCCccCC-CCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEE-ecCce
Confidence 999777799 999999999999999999999999999999877 899999999999999999888999999999 55 89
Q ss_pred eeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCC---CCccchHH
Q psy10663 239 TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP---VSSYTINE 315 (572)
Q Consensus 239 ~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~---~~~~~~~~ 315 (572)
+++|+|+||||||||||+||||||+|||||+++|+++|||++.|||+||+||+||+..+ +......+. ........
T Consensus 301 ~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~-~~~~~~~~~~~~~~~~~~~~ 379 (623)
T KOG1238|consen 301 EHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP-GFVFSTNPVELSLIRLVGIT 379 (623)
T ss_pred eeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc-eeeecCCCccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999996 544444443 22233456
Q ss_pred HHHHHHHcCCCccccCCcccEEEEEeCCCC----CCCCeeEEeeccC-CCchhhhhhhhccccCchhHHHHHhhcCCCCC
Q psy10663 316 IIYEYLTQRTGRFTDIGMSNFIGYLDTDFK----GNPDVAVTQYYFP-AQDTLFLRGHLKAWNVNDDLVERFVKVNADKP 390 (572)
Q Consensus 316 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (572)
.+.+|.....||+...+ .+..+|+++... .+||+++++.... .++. ...+....+ ++++.++.......
T Consensus 380 ~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~--~~~~~~~~~---~~y~~~~~~~~~~~ 453 (623)
T KOG1238|consen 380 TVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDG--LTALRKALG---EIYQALFGELTNSD 453 (623)
T ss_pred HHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEeccccccccc--hhhhhhhcc---hHHHHhhhhhhcCc
Confidence 67899999999999876 678999988754 3899998877765 2222 122222222 56666666555555
Q ss_pred eEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCCC
Q psy10663 391 ILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470 (572)
Q Consensus 391 ~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~ 470 (572)
.+.++..+++|.|+|+|+|.|+||++.|.|++||+.+|+|++.++++++.+.++.++.+|++++...+..+.|+|+....
T Consensus 454 ~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~ 533 (623)
T KOG1238|consen 454 SFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAF 533 (623)
T ss_pred eeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccC
Confidence 67788888999999999999999999999999999999999999999999999999999999999999989999999899
Q ss_pred CCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy10663 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550 (572)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~ 550 (572)
.+|++|+||+|....+.||++|||+||+..||++|||+++||||++||||+|||+||.+|++||++|+||||||+||.|+
T Consensus 534 ~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik 613 (623)
T KOG1238|consen 534 LSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIK 613 (623)
T ss_pred CCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q psy10663 551 SPVNVT 556 (572)
Q Consensus 551 ~~~~~~ 556 (572)
+++...
T Consensus 614 ~~~~~~ 619 (623)
T KOG1238|consen 614 EEWLAN 619 (623)
T ss_pred HHhhhc
Confidence 987543
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=1.8e-88 Score=733.23 Aligned_cols=507 Identities=27% Similarity=0.425 Sum_probs=406.4
Q ss_pred CccccccCCCCCeEEEEcccCCCC---CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDAP---ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII 77 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~ 77 (572)
|+|+||||+++.||||||+|+... .....|..+...+..+.++|.|.+.|+.. ..++.+.+.+||+|||||.|
T Consensus 13 vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~g~~lGGss~i 88 (532)
T TIGR01810 13 VLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGHARGKVLGGSSSI 88 (532)
T ss_pred HHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEeeecccccCCCCCE
Confidence 589999998458999999998642 23344543322123445799999988874 56788999999999999999
Q ss_pred ccceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHH
Q psy10663 78 NDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFS 156 (572)
Q Consensus 78 n~~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~ 156 (572)
|+|+|+|+++.||+.|+. .|+++|+|++|+|||+|+|+++... .+ .|+.+||+.+..++. ..+ ..+.|.
T Consensus 89 n~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~------~~--~~g~~G~~~v~~~~~-~~~-~~~~~~ 158 (532)
T TIGR01810 89 NGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE------KP--YRGHDGPIKVRRGPA-DNP-LFQAFI 158 (532)
T ss_pred eeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC------cc--cCCCCCCEEEecCCC-CCH-HHHHHH
Confidence 999999999999999998 6889999999999999999987532 23 799999999987766 677 889999
Q ss_pred HHHHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC
Q psy10663 157 KAFEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 235 (572)
Q Consensus 157 ~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~ 235 (572)
++++++|++.. ++ ++....|++.|...|.+|+|+++..+||+++.+++|++|+++++|+||+++ +++|+||++.+
T Consensus 159 ~a~~~~G~~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~~~~- 234 (532)
T TIGR01810 159 EAGVEAGYNKTPDV-NGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKK- 234 (532)
T ss_pred HHHHHcCCCccCCC-CCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEEEEe-
Confidence 99999999877 55 777777888888888999999999999999878999999999999999998 57999999984
Q ss_pred CCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCC-CCcc---
Q psy10663 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP-VSSY--- 311 (572)
Q Consensus 236 ~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~-~~~~--- 311 (572)
.+...++.+.|+||||||||+||+|||+|||||+++|+++||+++.|||+||+|||||+.+. +.+.++.+. ....
T Consensus 235 ~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~-~~~~~~~~~~~~~~~~~ 313 (532)
T TIGR01810 235 GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVY-VQHACKQPVSLYPSLNW 313 (532)
T ss_pred CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccce-eEEEecCCcccccccch
Confidence 34445554557999999999999999999999999999999999999999999999999984 888887653 1110
Q ss_pred -chHHHHHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCC
Q psy10663 312 -TINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADK 389 (572)
Q Consensus 312 -~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (572)
.......+|.....|++.... ....+|...... ..|++++.+.+.... ..+. .....
T Consensus 314 ~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~--------~~~~~ 372 (532)
T TIGR01810 314 LKQPFIGAQWLFGRKGAGASNH-FEGGGFVRSNDDVDYPNIQYHFLPVAIR------------YDGT--------KAPKA 372 (532)
T ss_pred hhhhHHHHHHHhcCCCCccccc-cceeEEEecCCCCCCCCeEEEEEeeeec------------cCCC--------CCCCC
Confidence 111123456666677765432 234456544321 145555543321100 0000 00011
Q ss_pred CeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCC
Q psy10663 390 PILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469 (572)
Q Consensus 390 ~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~ 469 (572)
..+.+....++|.|+|+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++.+++.+...+. .| ...
T Consensus 373 ~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p---~~~ 446 (532)
T TIGR01810 373 HGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SP---GPE 446 (532)
T ss_pred CcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CC---CCC
Confidence 224555667899999999999999999999999999999999999999999999999887776533222 12 234
Q ss_pred CCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHh
Q psy10663 470 YQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFI 549 (572)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I 549 (572)
..++++|++|+|....+.+|++||||||++++++||||++|||||++||||||+||||+++++||++|+||||||+||+|
T Consensus 447 ~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I 526 (532)
T TIGR01810 447 VQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADII 526 (532)
T ss_pred CCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997445689999999999999999999999999999999999999999999999
Q ss_pred hCCC
Q psy10663 550 QSPV 553 (572)
Q Consensus 550 ~~~~ 553 (572)
+++.
T Consensus 527 ~~~~ 530 (532)
T TIGR01810 527 RGKK 530 (532)
T ss_pred hccC
Confidence 9865
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.2e-88 Score=738.32 Aligned_cols=506 Identities=25% Similarity=0.426 Sum_probs=406.2
Q ss_pred CccccccCCCCCeEEEEcccCCC---CCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhh
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA---PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSII 77 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~---~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~ 77 (572)
++|.||||++|++|||||+|+.. ....+.|..+...+..+.++|.|.+.|++. ..++.+.+.+||+|||||.|
T Consensus 19 vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~g~~lGGsS~i 94 (560)
T PRK02106 19 VLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRRMECPRGKVLGGSSSI 94 (560)
T ss_pred HHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCeeecccccccCCCCCc
Confidence 58999999679999999999764 223345543322123456799999888874 56778999999999999999
Q ss_pred ccceeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEcc-CCccChHHHHHH
Q psy10663 78 NDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTI-KTEKINLLRSTF 155 (572)
Q Consensus 78 n~~~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~-~~~~~~~~~~~~ 155 (572)
|+|+|+|+++.||+.|+.. |+++|+|++|+|||+|+|+++... .+ .|+.+||+++..+ .+ .++ ..+.|
T Consensus 95 N~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~------~~--~~g~~gp~~~~~~~~~-~~~-~~~~~ 164 (560)
T PRK02106 95 NGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE------DD--YRGGDGPLSVTRGKPG-TNP-LFQAF 164 (560)
T ss_pred cceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC------cc--ccCCCCCEEEeCCCCC-CCH-HHHHH
Confidence 9999999999999999986 889999999999999999987321 23 7889999999865 33 677 88999
Q ss_pred HHHHHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc
Q psy10663 156 SKAFEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN 234 (572)
Q Consensus 156 ~~a~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~ 234 (572)
.++++++|++.. +. +++.+.|++.|+.+|.+|.|+++..+||+++.+++|++|+++|+|+||+++ +++|+||++.+
T Consensus 165 ~~a~~~lG~~~~~~~-~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~GV~~~~ 241 (560)
T PRK02106 165 VEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYER 241 (560)
T ss_pred HHHHHHcCCCcCCCC-CCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEEEEEEe
Confidence 999999999977 55 777788988888889999999999999999888999999999999999998 57999999986
Q ss_pred CCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCC--C---
Q psy10663 235 PQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV--S--- 309 (572)
Q Consensus 235 ~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~--~--- 309 (572)
.++....+.| |+||||||||+||+|||+|||||+++|+++||+++.|||+||+|||||+.+. +.+.++.+.. .
T Consensus 242 ~~~~~~~~~a-k~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~~~~~~~~~~~~~ 319 (560)
T PRK02106 242 GGGRETARAR-REVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYECKQPVSLYPALK 319 (560)
T ss_pred CCcEEEEEee-eeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce-EEEEeCCCcccccccc
Confidence 5444444455 6999999999999999999999999999999999999999999999999995 8888776531 1
Q ss_pred ccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCC
Q psy10663 310 SYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNAD 388 (572)
Q Consensus 310 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (572)
.........+|+..+.|++.... ....+|.+.... ..|++++.+.+... . ..+.. . ..
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~---------~---~~~~~-------~-~~ 378 (560)
T PRK02106 320 WWNKPKIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPNIQYHFLPVAI---------R---YDGSN-------A-VK 378 (560)
T ss_pred hhhhhHHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCCeEEEEeeccc---------c---ccCCC-------C-CC
Confidence 11111223466666778765432 234456554321 24555543322110 0 00000 0 01
Q ss_pred CCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccC
Q psy10663 389 KPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKC 468 (572)
Q Consensus 389 ~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~ 468 (572)
...+.+...+++|.++|+|+|+++||++.|.|+++|+.++.|++.++++++++++++++.+++.+...+. .|+ .
T Consensus 379 ~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~---~ 452 (560)
T PRK02106 379 GHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPG---A 452 (560)
T ss_pred CCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCC---c
Confidence 1235555677899999999999999999999999999999999999999999999999888776544332 222 2
Q ss_pred CCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHH
Q psy10663 469 KYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATF 548 (572)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~ 548 (572)
...+++++++|++....+++|++||||||+ |++||||++|||||++||||+|+||||+++++||++||||||||+||+
T Consensus 453 ~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~ 530 (560)
T PRK02106 453 DVQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADL 530 (560)
T ss_pred ccCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHH
Confidence 346788899999999889999999999996 457999999999999999999999999999999999999999999999
Q ss_pred hhCCCC
Q psy10663 549 IQSPVN 554 (572)
Q Consensus 549 I~~~~~ 554 (572)
|+++++
T Consensus 531 I~~~~~ 536 (560)
T PRK02106 531 IRGRTP 536 (560)
T ss_pred HhccCC
Confidence 999874
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-78 Score=647.93 Aligned_cols=505 Identities=27% Similarity=0.416 Sum_probs=404.2
Q ss_pred CccccccCCCCCeEEEEcccCCCCC-CccccccchhhhcCC-CccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDAPI-STAIPAMWHESIQDS-KLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN 78 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~~~-~~~~p~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n 78 (572)
++|+||| ++|++|||||+|+.... ...+|..+.. +... ..+|.|.+++++ +..++.+.++||++|||||.||
T Consensus 21 ~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~----~~~~r~~~~~rgk~lGGsS~in 94 (542)
T COG2303 21 VLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAF-LMNGPRYDWGFRTEPEP----HLRGRELAWPRGKVLGGSSSIN 94 (542)
T ss_pred HHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhh-hccCcccCCccccCccc----CCCCccccccccCcccchhhhc
Confidence 5899999 67999999999987533 4566766655 4443 789999999888 3788999999999999999999
Q ss_pred cceeccCChhhHHHHHh-cCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHH
Q psy10663 79 DMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSK 157 (572)
Q Consensus 79 ~~~~~r~~~~df~~w~~-~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~ 157 (572)
+|+|+|+++.||+.|.. .|+++|+|+|++|||+++|++....... ... .|+..||+++..+.. ..+ +.+.|.+
T Consensus 95 g~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~--~~~--~~g~~gp~~~~~~~~-~~~-~~~a~~~ 168 (542)
T COG2303 95 GMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQD--LRT--WHGGGGPLPVSPPRS-PNP-IARAFIE 168 (542)
T ss_pred cceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCC--CCC--CcCCCCCccccCCCC-chH-HHHHHHH
Confidence 99999999999999987 4789999999999999999977543210 022 799999999987754 678 9999999
Q ss_pred HHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC
Q psy10663 158 AFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG 237 (572)
Q Consensus 158 a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g 237 (572)
+.+++|++..+.+|+....|++.|+.+|.+|+|+++..+||.++.+++|++|++++.|++|+++ +++++||++...++
T Consensus 169 a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~gv~~~~~~~ 246 (542)
T COG2303 169 AGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDG 246 (542)
T ss_pred HHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeEEEEEEeCCC
Confidence 9999999988443888888888877666699999999999999999999999999999999999 78999999984333
Q ss_pred c-eeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCCCcc----c
Q psy10663 238 K-TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY----T 312 (572)
Q Consensus 238 ~-~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~~~~----~ 312 (572)
. ...+.+.++||||||+|+||+|||+||||+.+.+..+|+.++.++|+||+|||||.... +.+..+....... .
T Consensus 247 ~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~~~~~~~~~~~~~~~~ 325 (542)
T COG2303 247 GTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAFEATEPTNDSVLSLFS 325 (542)
T ss_pred CceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hheeccCccccccccccc
Confidence 2 23444446999999999999999999999999999999999999999999999999994 7777665531100 0
Q ss_pred hHHH-HHHHHHcCCCccccCCcccEEEEEeCCCC-CCCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhhcCCCCC
Q psy10663 313 INEI-IYEYLTQRTGRFTDIGMSNFIGYLDTDFK-GNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKP 390 (572)
Q Consensus 313 ~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (572)
.... ..+|...+.|+...... ..+|...... ..|+.++++...+... . ......
T Consensus 326 ~~~~~~~~~~~~~~G~~~~~~~--~~gf~~~~~~~~~p~~~~~~~~~~~~~------------~----------~~~~~~ 381 (542)
T COG2303 326 KLGIGADRYLLTRDGPGATNHF--EGGFVRSGPAGEYPDGQYHFAPLPLAI------------R----------AAGAEH 381 (542)
T ss_pred cccccceeEEeecCCCcccccc--cccccccCccccCCCcccccccccccc------------c----------ccccCC
Confidence 1111 12333445666554321 2235554433 2566666554432100 0 011234
Q ss_pred eEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccCCC
Q psy10663 391 ILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470 (572)
Q Consensus 391 ~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~ 470 (572)
.+++.....+|.++|.|++++.||...|.|+++|..++.|+..+.++++..++++.+..+......+. .| ....
T Consensus 382 ~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~---~~---~~~~ 455 (542)
T COG2303 382 GFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL---AP---GPRV 455 (542)
T ss_pred ccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh---cC---CCcc
Confidence 56677778899999999999999999999999999999999999999999999998665555433322 12 2345
Q ss_pred CCHHHHHHHHHhccCCCccccccccccCCCCC-CCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHh
Q psy10663 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDP-LAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFI 549 (572)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~-~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I 549 (572)
.+++++..|++....+.+|++||||||. || .+|+|++|||||++||||+|+|+||+++++||++||+|||+|+||+|
T Consensus 456 ~~~~~~~~~~~~~~~t~~H~~GT~rMG~--Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I 533 (542)
T COG2303 456 TTDEDISAAIRFLARTAYHPMGTCRMGS--DPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHI 533 (542)
T ss_pred ccHHHHHHHHHhccCccccccccccCCC--CchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHH
Confidence 7788899999999999999999999995 45 45666999999999999999999999999999999999999999999
Q ss_pred hCC
Q psy10663 550 QSP 552 (572)
Q Consensus 550 ~~~ 552 (572)
+++
T Consensus 534 ~~~ 536 (542)
T COG2303 534 LGD 536 (542)
T ss_pred hhc
Confidence 984
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.1e-74 Score=622.87 Aligned_cols=481 Identities=20% Similarity=0.256 Sum_probs=343.1
Q ss_pred CccccccCCCCCeEEEEcccCCCC--CCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhc
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDAP--ISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIIN 78 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n 78 (572)
++|.|||| +.+|||||+|+... +....+. . +.....+|.|.+.+|.. ..++.+.+.|||+|||||.||
T Consensus 69 ~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~---~-~~~~~~d~~~~~~~q~~----~~~~~~~~~rGr~LGGsS~iN 138 (587)
T PLN02785 69 PLAATLSQ--NFSVLLLERGGVPFGNANVSFLE---N-FHIGLADTSPTSASQAF----ISTDGVINARARVLGGGTCIN 138 (587)
T ss_pred HHHHHHhc--CCcEEEEecCCCCCCCchhhhHH---h-hCCcccccCCccccccc----cCCCceeccccceecchhhhc
Confidence 47999997 58999999998532 2221221 1 23345789998888863 456789999999999999999
Q ss_pred cceeccCChhhHHHHHhcCCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEccCCccChHHHHHHHHH
Q psy10663 79 DMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKA 158 (572)
Q Consensus 79 ~~~~~r~~~~df~~w~~~g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~~~~~~~~~~~~~~~~a 158 (572)
+|+|.|+++.||+. .+|+|+++.|||+++|+.+.. .+. ..+ +...|.++
T Consensus 139 ~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-----------------------~~~-~~~-~~~~~~~a 187 (587)
T PLN02785 139 AGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-----------------------WPK-VAP-WQAALRDS 187 (587)
T ss_pred CeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-----------------------CCC-cCh-HHHHHHHH
Confidence 99999999999963 679999999999999976411 012 356 88999999
Q ss_pred HHHcCCCCCCCCCCCCccee--ecccccc--CCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCC--CEEEEEEE
Q psy10663 159 FEDIGFKSPDTFTVSDHVGI--APPMYYL--KDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK--TKVTGVEF 232 (572)
Q Consensus 159 ~~~~G~~~~~~~~~~~~~g~--~~~~~~~--~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~--~~a~gV~~ 232 (572)
++++|++. + |+....+. ..+..++ ..|.|++++. +++ ..+++|++|+++|+|+||++++++ ++|+||++
T Consensus 188 ~~e~G~~~--~-n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~~-~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~ 262 (587)
T PLN02785 188 LLEVGVSP--F-NGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LLA-AGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIF 262 (587)
T ss_pred HHHcCCCc--c-CCCCCCCccceeeeEEEeCCCCEEcCHHH-HHh-hcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEE
Confidence 99999973 2 32221111 0111223 5689998874 554 567899999999999999998532 48999999
Q ss_pred EcCCCceeEe----eccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcccccEEEEeeCCCC
Q psy10663 233 RNPQGKTIKV----NANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 308 (572)
Q Consensus 233 ~~~~g~~~~v----~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~~~~~~~~~~~~~~ 308 (572)
.+.+|+++++ +++|+||||||+|+||+|||+|||||+++|+++||+++.|+|+||+||+||+... +.+..+.+..
T Consensus 263 ~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~-i~~~~~~~~~ 341 (587)
T PLN02785 263 KDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS-IFVPSKAPVE 341 (587)
T ss_pred EECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc-eEEEeCCCch
Confidence 9777876654 2557999999999999999999999999999999999999999999999999984 8887765431
Q ss_pred CccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCCC---CCCeeEEeeccCCCchhhhhhhhccccCchhHHHHHhh-
Q psy10663 309 SSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKG---NPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVK- 384 (572)
Q Consensus 309 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 384 (572)
. .....+.....|++.... .+|....... ...+..........+. .. ... +....+..
T Consensus 342 ~-----~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~-~~~~~~~~~ 403 (587)
T PLN02785 342 Q-----SLIQTVGITKMGVYIEAS----SGFGQSPDSIHCHHGIMSAEIGQLSTIPP----KQ----RTP-EAIQAYIHR 403 (587)
T ss_pred h-----hhHhhhhhhccccceecc----cccccCchhhhhhccccccccccccccCc----cc----ccc-hhhhhhccC
Confidence 1 011112222234432100 0111100000 0000000000000000 00 000 00000000
Q ss_pred --cCC--CCCeEEEEEEecccCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCccccccccccccc
Q psy10663 385 --VNA--DKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQL 460 (572)
Q Consensus 385 --~~~--~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 460 (572)
... ......+...++.|.|+|+|+|.++||++.|.|++||+.++.|++.++++++.+++++++.+++.+......+
T Consensus 404 ~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~ 483 (587)
T PLN02785 404 KKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQT 483 (587)
T ss_pred cccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccc
Confidence 000 0000123445689999999999999999999999999999999999999999999999998887764322110
Q ss_pred --cc---------cccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCC
Q psy10663 461 --EI---------KECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVE 529 (572)
Q Consensus 461 --~~---------p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~ 529 (572)
.+ +..+. ...++++|++|+|+...+.+|++|||+|| +|||+++||||++||||||+||||++
T Consensus 484 ~~~~~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~ 556 (587)
T PLN02785 484 MEKVLNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDES 556 (587)
T ss_pred cccccccccccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCC
Confidence 00 00011 13577889999999999999999999999 79999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 530 MVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 530 ~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
|++||++|+||||||+|++|+++.
T Consensus 557 p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 557 PGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=4.1e-55 Score=461.42 Aligned_cols=406 Identities=15% Similarity=0.136 Sum_probs=269.3
Q ss_pred eecCcccchhhhhccceeccCChhhHHHHHhcCCCCC--ChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEEEc
Q psy10663 65 LNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW--TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITT 142 (572)
Q Consensus 65 ~~~g~~lGGsS~~n~~~~~r~~~~df~~w~~~g~~~W--~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~~~ 142 (572)
..|.|+|||+|+||++.|.|++|.+- ...+ .|| +|+||+|||+++|++++.+... + .
T Consensus 111 ~ar~R~vGGsS~hW~g~~~R~~p~~r---~g~~-~dWPI~y~eL~PyY~~Ae~~~gv~g~~-------~----------~ 169 (544)
T TIGR02462 111 EAVTRGVGGMSTHWTCATPRFHREER---PKLS-DDAAEDDAEWDRLYTKAESLIGTSTDQ-------F----------D 169 (544)
T ss_pred hheeeccCchhhhcCcccCCCCHHhc---cCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCc-------C----------C
Confidence 45679999999999999999999642 2223 699 9999999999999998654211 0 0
Q ss_pred cCCccChHHHHHHHHHHHHcCC-CCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhc----CCCCeEEeccceEEE
Q psy10663 143 IKTEKINLLRSTFSKAFEDIGF-KSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIK----DKNTVQVSKNSEVTK 217 (572)
Q Consensus 143 ~~~~~~~~~~~~~~~a~~~~G~-~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~----~~~nl~i~~~~~V~~ 217 (572)
++.+... ..+.+.++++ |. .....+.+ +..+ .|..++|+|+..+.++.+. +++|++|++++.|++
T Consensus 170 ~~~~~~~-~~~~~~~~~~--g~~~~~~~PlA-----~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~ 239 (544)
T TIGR02462 170 ESIRHNL-VLRKLQDEYK--GQRDFQPLPLA-----CHRR--TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTR 239 (544)
T ss_pred Ccccchh-HHHHHHHHhc--cccccccCchh-----hhcc--CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEE
Confidence 1110122 3333444332 33 21111111 2221 4677889987666676554 489999999999999
Q ss_pred EEEeCCC-CEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcc
Q psy10663 218 LCFDETK-TKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295 (572)
Q Consensus 218 i~~~~~~-~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~ 295 (572)
|++++++ ++|++|+|.|. +|+.++|+|+ .||||||+|+||||||+|+++... .+.|+.|.+..+.||||||||+.
T Consensus 240 i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss~~g~VGRnlmdh~~ 316 (544)
T TIGR02462 240 LVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPPLLPSLGRYITEQSM 316 (544)
T ss_pred EEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCCCCCCCCcchhcCCC
Confidence 9998754 68999999987 6888999996 899999999999999999998532 46788886422349999999999
Q ss_pred cccEEEEeeCCCCCccchHHHHHHHHHcCCCccccCCcccEEEEEeCCCC----CCC----CeeEE-eeccCCCchhhhh
Q psy10663 296 FFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFK----GNP----DVAVT-QYYFPAQDTLFLR 366 (572)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~----~~~----~~~~~-~~~~~~~~~~~~~ 366 (572)
.. +.+.++++..+ .+ .++.. ...|+..... ..+ .+.+. ..+....+
T Consensus 317 ~~-~~~~~~~~~~~---------~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----- 371 (544)
T TIGR02462 317 TF-CQIVLSTELVD---------SV----RSDPR------GLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTP----- 371 (544)
T ss_pred cc-EEEEecchhhh---------hc----cCCcc------ccccccccchhhhccccCCcccccccccCcccccc-----
Confidence 84 77777654310 00 11100 0011111000 000 00000 00000000
Q ss_pred hhhccccCchhHHHHHh------hcCCCCCeEEE-EEEecccCcceEEEecC--CCCCCCCeeeCCCCCCHHHHHHHHHH
Q psy10663 367 GHLKAWNVNDDLVERFV------KVNADKPILII-GLVSLCPKAEGVVEINS--NDPTKNPTIRYPLYTEEEDIKNILTA 437 (572)
Q Consensus 367 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~p~s~g~v~l~~--~d~~~~P~i~~~y~~~~~D~~~~~~~ 437 (572)
+.....|+..+....+ +.......+.+ ...++.|..+|+|+|++ +|.+|+|+++++|..+++|++.+..+
T Consensus 372 -~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~ 450 (544)
T TIGR02462 372 -FTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRM 450 (544)
T ss_pred -cccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHH
Confidence 0000011111100000 00001112222 35678899999999985 69999999999999999999999999
Q ss_pred HHHHHHHhcCccccccccccccccccccccCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCC
Q psy10663 438 VKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSN 517 (572)
Q Consensus 438 ~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~n 517 (572)
.+.+.++++..+...... .+ .+. ....+.|++||||||.++. +||||++|||||++|
T Consensus 451 ~~~~~~i~~~~G~~~~~~------~~--------------~~~--~~~~~~H~~Gt~rMG~dp~-~sVvd~~~rv~g~~N 507 (544)
T TIGR02462 451 MTDMCNVAAKIGGYLPGS------LP--------------QFM--EPGLALHLAGTTRIGFDEQ-TTVANTDSKVHNFKN 507 (544)
T ss_pred HHHHHHHHHHcCCCcccc------cc--------------ccc--CCCccccCCCCeecCCCCC-CceECCCCcEeCCCC
Confidence 999999976543211100 00 000 1235789999999997543 799999999999999
Q ss_pred ceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 518 LRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 518 L~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
|||+|+|+||+.+++|||+||||||+|+|++|++++
T Consensus 508 L~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 508 LYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred eEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998765
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=5.3e-53 Score=425.01 Aligned_cols=278 Identities=29% Similarity=0.501 Sum_probs=221.2
Q ss_pred CccccccCCCCCeEEEEcccCCCCCCccccccchhhhcCCCccceeeeecCCCcCCCCCCceeeeecCcccchhhhhccc
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDM 80 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~lGGsS~~n~~ 80 (572)
|+|.||||+++++|||||+|++.......+...........++|.+.+.++.. ..++.+.+++|++|||||+||+|
T Consensus 14 v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~G~~lGGsS~in~~ 89 (296)
T PF00732_consen 14 VVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPRGKGLGGSSAINGG 89 (296)
T ss_dssp HHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEEB-STTGGGGTS--
T ss_pred HHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeecceecCCccccccc
Confidence 47999999855899999999987554322221111134456888888877763 57788889999999999999999
Q ss_pred eeccCChhhHHHHHhc-CCCCCChhhHHHHHHHhhcCCCCCcccccCCCcccccCCCcEEE-EccCCccChHHHHHHHHH
Q psy10663 81 IHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTI-TTIKTEKINLLRSTFSKA 158 (572)
Q Consensus 81 ~~~r~~~~df~~w~~~-g~~~W~~~~l~pyy~~~e~~~~~~~~~~~~~~~~~~g~~Gp~~~-~~~~~~~~~~~~~~~~~a 158 (572)
+++|+++.||+.|... |.++|+|++|+|||+++|++..+. .. .|+.++|+++ ..+.+ ..+ ..+.|.++
T Consensus 90 ~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~------~~--~~g~~~~~~v~~~~~~-~~~-~~~~~~~a 159 (296)
T PF00732_consen 90 VYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS------SD--LHGVDGPLPVSSSPPY-PSP-MNQALMDA 159 (296)
T ss_dssp BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB------GG--GSCBSSSEEEHHHCSC-HCT-HHHHHHHH
T ss_pred ccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc------cc--ccccccccccccccCC-CCH-HHHHHHHH
Confidence 9999999999999985 788899999999999999998665 23 7889999998 44444 667 78999999
Q ss_pred HHHcCCCCC-CCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC
Q psy10663 159 FEDIGFKSP-DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG 237 (572)
Q Consensus 159 ~~~~G~~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g 237 (572)
++++|++.. ++ +.+...|+..+...|++|+|+|+..+||+++.+++|++|+++|+|+||+++.++++|+||++.+.++
T Consensus 160 ~~~~G~~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~ 238 (296)
T PF00732_consen 160 AEELGIPVPQDF-NGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDG 238 (296)
T ss_dssp HHHTTHHBCSCT-TSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTT
T ss_pred HHHcCCcccccc-ccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCC
Confidence 999999844 55 5555556555545599999999999999999989999999999999999986678999999998777
Q ss_pred c--eeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCceecCcccCccccCCcc
Q psy10663 238 K--TIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295 (572)
Q Consensus 238 ~--~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~~~lp~VG~nl~dH~~ 295 (572)
. .+.+.+ |+||||||||+||+|||+||||++++|+++||+++.++| ||+||||||.
T Consensus 239 ~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~~ 296 (296)
T PF00732_consen 239 GVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHPV 296 (296)
T ss_dssp SEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--EE
T ss_pred cceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhcccC
Confidence 6 344555 699999999999999999999999999999999999999 9999999973
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=6.1e-35 Score=261.07 Aligned_cols=143 Identities=31% Similarity=0.543 Sum_probs=117.2
Q ss_pred cCcceEEEecCCCCCCCCeeeCCCCCCHHHHHHHHHHHHHHHHHhcCcccccccccccc-ccccccccCCCCCHHHHHHH
Q psy10663 401 PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQ-LEIKECAKCKYQSEEYYRCA 479 (572)
Q Consensus 401 p~s~g~v~l~~~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~ 479 (572)
|.|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++.+. +++++..... ...+.+......++++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999988 6666543322 11122333456778899999
Q ss_pred HHhccCCCccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHH
Q psy10663 480 IKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC 545 (572)
Q Consensus 480 ~~~~~~~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ 545 (572)
++....+.+|++||||||.+++. +|||++|||||++||||+|+||||+.+++||++|+||||+|+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999987765 999999999999999999999999999999999999999996
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.16 E-value=0.00096 Score=73.34 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=52.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRILQ 262 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LLl 262 (572)
.|..+.+..|++|++++.|++|+.++ +++|+||.+. .+|+.++|+|+|.||||+|+++. +.+|.
T Consensus 218 ~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~-~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 218 RLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVE-REGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEE-eCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 34455667899999999999999976 3789999987 57888899997679999999985 55544
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.10 E-value=0.0014 Score=71.15 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=51.6
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh-hHHHH
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRILQ 262 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T-p~LLl 262 (572)
.++..+.++++++|++++.|++|+.+ +++|+||++. .+|+.++|+|+|.||||+|.++. +.++.
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~-~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVE-RGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEE-ECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 45555555679999999999999987 5799999986 57888899997789999999975 44443
No 11
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.93 E-value=0.0082 Score=65.62 Aligned_cols=60 Identities=28% Similarity=0.308 Sum_probs=47.9
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
+...+++|+.+++|+.|..+ +++++||++.|. +|+..+|+|+ .||+|||+. +.+|+...|
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~w-a~~l~~~~g 219 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIW-GQHIAEYAD 219 (546)
T ss_pred HHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCChh-HHHHHHhcC
Confidence 35679999999999999887 578999998753 5666789996 899999974 667765444
No 12
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0029 Score=69.32 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=50.6
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
...++.+++|++++.|++|+.+ +++|+||.+. .+|+.++++|++.||||+|++++-+-|+.
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~-~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAA-ESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEE-eCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 3346679999999999999987 4799999987 47788899997679999999998665554
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.70 E-value=0.0044 Score=67.88 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=49.0
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
|...+.+.+++|++++.|++|+.+ +++|+||++. .+|+.++++|+|.||||+|++..-.
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~-~~g~~~~i~A~~aVIlAtGG~~~N~ 272 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVV-RDGREVLIRARRGVLLASGGFGHNA 272 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEE-ECCeEEEEEecceEEEecCCccCCH
Confidence 333356679999999999999987 4799999987 5788889999768999999998743
No 14
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.35 E-value=0.02 Score=59.30 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=52.2
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
++..+.+++|++|..+++|+.|....++...+.|.-. .+|+..+|+|+ -|+|+||+ ++=.||+.|||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~-~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi 253 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDL-KTGEKREVRAK-FVFVGAGG-GALPLLQKSGI 253 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEec-CCCCeEEEECC-EEEECCch-HhHHHHHHcCC
Confidence 4444456689999999999999998765454444333 47888999996 99999998 57789999997
No 15
>PRK07121 hypothetical protein; Validated
Probab=96.31 E-value=0.0097 Score=64.32 Aligned_cols=63 Identities=32% Similarity=0.418 Sum_probs=49.2
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
|....++.+++|++++.|++|+.++ +++++||++. .+++.++++|+|.||||+|.+..-+-|+
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~-~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEAR-RYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEE-eCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 3333456799999999999999875 3689999987 4677788999559999999987543333
No 16
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.28 E-value=0.011 Score=63.41 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=53.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGD 268 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~ 268 (572)
..+.+++|+.++.|++|+.+ +++++||.+.+.+|+...++|+ .||||+|++...+.|+.+-.++
T Consensus 141 ~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 141 AERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcCC
Confidence 45679999999999999986 4789999986567777889995 8999999999988888765543
No 17
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.26 E-value=0.01 Score=64.90 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=46.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
..+.+++|++++.|++|+.+ +++++||.+. .+|+++.|.|+|-||||+|.++...
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~-~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDD--GGRVTGAVVD-HRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHCCCEEEecCEeeEEEec--CCEEEEEEEE-ECCcEEEEEcCCEEEEecCCccccH
Confidence 45679999999999999865 4799999887 4677788999778999999998654
No 18
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.11 E-value=0.014 Score=61.73 Aligned_cols=57 Identities=28% Similarity=0.492 Sum_probs=44.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
.+..+++|+.++.|++|+.+ +++|+||++.+ .+|+.++|+|+ .||||+|.++. .++.
T Consensus 151 ~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 34556999999999999998 46999999984 47888999997 99999999999 5443
No 19
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.88 E-value=0.023 Score=62.72 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=47.3
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
.+.+.+++|+.++.|++|+.+ +++++||.+.+ ++..++++|+|.||||+|++..-.-++
T Consensus 226 ~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 226 SAEDLGVRIWESAPARELLRE--DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 345679999999999999987 57999998873 455678999558999999998655443
No 20
>KOG2404|consensus
Probab=95.83 E-value=0.0093 Score=58.09 Aligned_cols=50 Identities=30% Similarity=0.459 Sum_probs=44.4
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.-++|+++++|++|+.+ .+++.||+|.|.+|+...+.++ .||||.|.+.-
T Consensus 158 e~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 35799999999999955 6899999999999999888886 89999999984
No 21
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.63 E-value=0.031 Score=61.59 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=46.5
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
.++.+++|++++.|++|+.+ +++++||.+. .+|+.+++.|++.||||+|++..-.
T Consensus 231 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg~~~n~ 285 (578)
T PRK12843 231 LRARGVRILTQTDVESLETD--HGRVIGATVV-QGGVRRRIRARGGVVLATGGFNRHP 285 (578)
T ss_pred HHhCCCEEEeCCEEEEEEee--CCEEEEEEEe-cCCeEEEEEccceEEECCCCcccCH
Confidence 45679999999999999886 4799999987 4677788998668999999998743
No 22
>PRK12839 hypothetical protein; Provisional
Probab=95.56 E-value=0.034 Score=61.02 Aligned_cols=56 Identities=32% Similarity=0.464 Sum_probs=44.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
+.+.+++|+.++.|++|+.++ +++++||.+.+.+|+ .++.+.|.||||+|++..-.
T Consensus 224 a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~-~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 224 ADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGA-VTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred HHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCc-EEEEeCCEEEEcCCCcccCH
Confidence 455789999999999998865 479999998855554 55666569999999998733
No 23
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.47 E-value=0.037 Score=58.70 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=45.0
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
++..+.++.|++|+.++.|++|+.+ +++++||.+. .++..++++|+ .||||+|+++.
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~-~~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICL-KDNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEE-ECCcEEEEEcC-eEEEccCcccc
Confidence 4444445679999999999999876 4789998876 35666789995 89999999764
No 24
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.38 E-value=0.041 Score=60.43 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=46.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.+++|+.++.|++|+.++ +++++||.+.+ .+|+.+.|+|+ .||||+|.+..
T Consensus 136 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 136 NLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 456799999999999999864 47999999865 47888899995 99999999885
No 25
>PLN02815 L-aspartate oxidase
Probab=95.36 E-value=0.032 Score=61.35 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=47.1
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCC--EEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~--~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
++..+.+.+|++|+.++.|++|+.+++++ +++||.+.+. +|+.+.+.|+ .||||+|.++-
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH 223 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence 33334455799999999999999875444 4999998754 6777889995 99999999873
No 26
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.32 E-value=0.045 Score=60.13 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=46.3
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
....+.+++|+.++.|++|+.+ +++++||.+.+ .+|+...|+|+ .||||+|.++.
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 3345678999999999999986 47999999865 36888899995 99999999875
No 27
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.30 E-value=0.041 Score=58.53 Aligned_cols=58 Identities=28% Similarity=0.292 Sum_probs=46.0
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
|...+.+.+++|+.++.|++|+.++ +++++||++.+.+++...+.++ .||||+|++..
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~ 193 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGS 193 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCC
Confidence 3333456789999999999999875 4689999998656666677885 99999998876
No 28
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.28 E-value=0.043 Score=60.07 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=45.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.+++|++++.|++|+.++ +++++||.+.+ .+|+.+.++|+ .||||+|+++.
T Consensus 144 ~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 144 LIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 445899999999999999874 45799998876 57888899995 99999999874
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.16 E-value=0.043 Score=61.11 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=45.5
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
....|++|+.++.|++|+.+ +++++||.+.+. +|..+.+.|+ .||||+|.++.
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 35679999999999999987 479999999864 6777789995 89999999886
No 30
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.02 E-value=0.07 Score=59.00 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
..|++|+.++.|++|+.++ +++++||.+.+. +|+...+.|+ .||||+|.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 4689999999999999874 469999998864 6777889995 89999999864
No 31
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.00 E-value=0.057 Score=59.71 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=45.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.+++|+.++.|++|+.++ +++++||.+.+ .+|+.+.+.|+ .||||+|.++.
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 345789999999999999874 37999998864 47888899995 89999999885
No 32
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.98 E-value=0.074 Score=58.62 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=46.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..+.+++|+.++.|++|+.+ +++++||.+.+.+ ....++++|.||||+|.+..-.-++
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~-~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTE--GGRVVGARVIDAG-GERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCC-ceEEEEeCCEEEEcCCCccchHHHH
Confidence 45679999999999999987 5799999988433 4467888668999999987554444
No 33
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.98 E-value=0.039 Score=60.31 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=44.6
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.+++|++|+.++.|++|+.++++++++||.+. .+|..+.++|+ .||||+|+++.
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEcC-EEEEcCCCCcc
Confidence 34579999999999999987434799999887 47777789995 89999999753
No 34
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.88 E-value=0.072 Score=58.75 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=45.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
....+++|+.++.|++|+.++ +++++||.+.+ .+|+.+.++|+ .||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 446799999999999999864 47999999864 47888899995 99999999875
No 35
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.77 E-value=0.041 Score=57.22 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=47.4
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~ 256 (572)
+.+..+.+++|++|+.++.+.+|+.++ +..+.||.+.+.+++..+++|+ .||||+|.++
T Consensus 138 ~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 138 ALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred HHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 455556678999999999999999984 2356699998654567889996 9999999764
No 36
>PRK09077 L-aspartate oxidase; Provisional
Probab=94.71 E-value=0.079 Score=57.86 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=47.2
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeC----CCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDE----TKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~----~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
+..+.+.+|++|+.++.|++|+.++ ++++++||.+.+. +|+...|+|+ .||||+|++..
T Consensus 145 ~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 145 VERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred HHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 3334456799999999999998763 2379999998754 6777889995 99999999874
No 37
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.62 E-value=0.086 Score=57.95 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=44.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~ 256 (572)
..+.+++|+.++.|++|+.+ +++++||.+.+. +|+.+.++|+ .||||+|.++
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 34469999999999999987 479999998865 5667789995 9999999997
No 38
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.58 E-value=0.072 Score=59.48 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=45.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.+++|+.++.|++|+.+ +++++||.+.+ .+|+.+.+.|+ .||||+|.++.
T Consensus 168 ~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 168 AIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 45679999999999999987 57999999986 47888889995 89999998874
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.56 E-value=0.063 Score=54.90 Aligned_cols=60 Identities=35% Similarity=0.462 Sum_probs=43.9
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
.|.....+.|++|+.+++|++|..+ +++++||+.. +| +++|+ .||+|+|+ .|++|+-.++
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~--~g---~i~ad-~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTS--DG---EIRAD-RVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEET--TE---EEEEC-EEEE--GG-GHHHHHHTTT
T ss_pred hhHHHHHHhhhhccccccccchhhc--cccccccccc--cc---ccccc-eeEecccc-cceeeeeccc
Confidence 3333345569999999999999999 6788889875 44 38886 89999997 7888777665
No 40
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.51 E-value=0.085 Score=58.52 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=45.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+.|++|+.++.|++|+.++ ++++.||.+.+ .+|+.+.++|+ .||||+|.++.
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 445799999999999999843 47999999865 37888889995 99999999875
No 41
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.45 E-value=0.12 Score=56.54 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=43.0
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEc--CC------------CceeEeeccceeEeccCcchh-hHHHH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN--PQ------------GKTIKVNANREVVLAANSINS-VRILQ 262 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~--~~------------g~~~~v~A~k~VILaAGai~T-p~LLl 262 (572)
..+++|++++.|++|+.+ +++|+||++.+ .+ +...+|+|+ -||||+|.++. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~--~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~Ak-aVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT--DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQ-AVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEe--CCEEEEEEEEecccccccccccccccccceEEEecC-EEEEeCCCcccCHHHHH
Confidence 457999999999999986 48999998742 11 235688995 89999999984 44544
No 42
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.37 E-value=0.096 Score=58.20 Aligned_cols=54 Identities=20% Similarity=0.176 Sum_probs=45.5
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+.|++|+.++.|++|+.++ ++++.||.+.+. +|+.+.+.|+ .||||+|.++.
T Consensus 197 a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 345699999999999999874 379999998764 7888899995 99999999875
No 43
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.34 E-value=0.097 Score=56.74 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=45.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh-HHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV-RILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp-~LLl 262 (572)
....+++|++++.|++|+.+ +++++||.+...+|+..+++|+ .||||+|.+... .++.
T Consensus 200 ~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 200 VQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHHH
Confidence 35578999999999999865 4789999887545667789995 999999988754 4443
No 44
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.24 E-value=0.09 Score=56.72 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=43.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCC--CEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~--~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
++..|+++++++.|++|+++.++ ++|+||++... .+++..+.+++.|||+.|++..
T Consensus 236 Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 236 LEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 46689999999999999996333 78999999721 3344566777899999998854
No 45
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=94.14 E-value=0.099 Score=62.38 Aligned_cols=54 Identities=24% Similarity=0.454 Sum_probs=45.9
Q ss_pred CCeEEeccceEEEEEEeCC----C---CEEEEEEEEcC---CCceeEeeccceeEeccCcchhhH
Q psy10663 205 NTVQVSKNSEVTKLCFDET----K---TKVTGVEFRNP---QGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~----~---~~a~gV~~~~~---~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
.+++|+.++.|++|+.+++ | ++|+||++.+. +|+.+.|+|+ .||||+|.++.-.
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 6899999999999998742 2 38999999865 7888899995 8999999998743
No 46
>PRK08275 putative oxidoreductase; Provisional
Probab=94.10 E-value=0.11 Score=56.93 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=45.4
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~ 256 (572)
|.....+.+++|+.++.|++|+.++ ++++.||.+.+. +|+...++|+ .||||+|++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 3333456799999999999999864 368999987653 6777789995 8999999975
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.97 E-value=0.16 Score=55.98 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=45.1
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+.+|++++.++.|++|+.+ +++++||.+.+. +|+.+.++|+ .||||+|.+.-
T Consensus 142 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 142 SLTYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred HHhcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 334579999999999999987 479999988753 7777889995 99999999774
No 48
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.96 E-value=0.17 Score=55.82 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=44.6
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+.+|++++.++.|++|+.+ +++++||.+.+ .+|+...++|+ .||||.|++..
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 334468999999999999987 47999998865 36777889995 99999999774
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.76 E-value=0.15 Score=56.25 Aligned_cols=53 Identities=25% Similarity=0.189 Sum_probs=44.1
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.|++|+.++.|++|+.+ +++++||.+.+. +|+...++|+ .||||+|++..
T Consensus 139 ~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 139 CLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 33459999999999999987 479999988753 6777789995 99999999864
No 50
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.73 E-value=0.16 Score=56.61 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=41.6
Q ss_pred CeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 206 TVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 206 nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
|++|+.++.|++|+.+ ++++.||.+.+ .+|+.+.++|+ .||||+|+++.
T Consensus 165 ~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 4999999999999986 47899998764 36777889995 89999999774
No 51
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.64 E-value=0.15 Score=53.21 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=46.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS 264 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~S 264 (572)
.++.+.+++.++.|+++.++ ++++++|... ++...+++|+ .||||+|++-|..|+...
T Consensus 273 ~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~--~g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 273 FEQLGGVMLPGDRVLRAEFE--GNRVTRIHTR--NHRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHCCCEEEECcEEEEEEee--CCeEEEEEec--CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence 45678899999999999988 5788887654 4445678997 799999999899886554
No 52
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.58 E-value=0.2 Score=54.54 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=48.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
+...+++|+.++.|++|+.+ ++++++|++.|. +|+..+|+|+ .||+|||+. +..|+...|
T Consensus 138 A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~~~g 198 (516)
T TIGR03377 138 AQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIW-AGRIAEYAG 198 (516)
T ss_pred HHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcc-hHHHHHhcC
Confidence 45679999999999999987 578999998753 5777889996 899999964 677776555
No 53
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.53 E-value=0.4 Score=50.05 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=47.8
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCC
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGD 268 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~ 268 (572)
.|+..+ ...|++|..+++|+.|...++| ++-+.. .+|++. ++|+ .||.||| ..+-+|+.++|+.+
T Consensus 158 ~l~e~a-~~~g~~i~ln~eV~~i~~~~dg--~~~~~~--~~g~~~-~~ak-~Vin~AG-l~Ad~la~~~g~~~ 222 (429)
T COG0579 158 ALAEEA-QANGVELRLNTEVTGIEKQSDG--VFVLNT--SNGEET-LEAK-FVINAAG-LYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHH-HHcCCEEEecCeeeEEEEeCCc--eEEEEe--cCCcEE-EEee-EEEECCc-hhHHHHHHHhCCCc
Confidence 455554 4459999999999999998643 222222 367666 9995 8999999 57889999999654
No 54
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.47 E-value=0.21 Score=55.07 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=44.0
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.|++|++++.|++|+.+ ++++.||...+ .+|+...++|+ .||||+|++..
T Consensus 145 ~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 145 LRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 45679999999999999887 47899998754 36776789995 99999999874
No 55
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.43 E-value=0.15 Score=55.23 Aligned_cols=50 Identities=26% Similarity=0.346 Sum_probs=43.6
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.+++|+.++.|++|+.+ ++++.||.+.+.+|+.+.++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 68999999999999876 4789999988667777889995 99999999875
No 56
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.39 E-value=0.14 Score=55.60 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=43.3
Q ss_pred hhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 199 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 199 ~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
..+.++++++|+.++.|++|+.+ +++++||.+.+ ++..++++|+ .||||+|++..
T Consensus 144 ~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~-~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 144 AAVRATPSITVLEGAEARRLLVD--DGAVAGVLAAT-AGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred HHHHhCCCCEEEECcChhheeec--CCEEEEEEEEe-CCeEEEEECC-EEEEcCCCCcC
Confidence 33334569999999999999876 47999998874 4445678995 89999999863
No 57
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.38 E-value=0.22 Score=54.97 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=44.3
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+..+++|+.++.|++|+.+ +++++||.+.+. +|+...++|+ .||||+|++..
T Consensus 147 ~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (577)
T PRK06069 147 ALRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR 201 (577)
T ss_pred HHhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence 334479999999999999987 479999988753 6766789995 99999999863
No 58
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.33 E-value=0.19 Score=55.51 Aligned_cols=59 Identities=24% Similarity=0.175 Sum_probs=46.3
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCC--CCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDET--KTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~--~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
|...+...|++|+.++.|++|+.+++ +++++||.+.+ .+|+.+.++|+ .||||+|.+..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 33334567999999999999998742 27899998864 36777789995 99999999874
No 59
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.12 E-value=0.22 Score=55.01 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=44.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
....+++|+.++.|++|+.++ +++++||.+.+. +|+...++|+ .||||+|.+..
T Consensus 158 ~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 158 NVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 345799999999999999864 478999998754 6777788895 99999999874
No 60
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.04 E-value=0.28 Score=54.42 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=42.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcch
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~ 256 (572)
.+..|++|+.++.|++|+.+ +++++||.+.+ .+|+...++|+ .||||+|++.
T Consensus 143 ~~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 143 KKALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred HhcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 34456999999999999887 47899998754 35666789995 9999999986
No 61
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.95 E-value=0.24 Score=53.44 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=42.3
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+|++|+.++.|++|+.+ +++++||.+.+. +...+++|+ .||||+|++..
T Consensus 140 ~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~-~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 140 NHPNIRIIEGENALDLLIE--TGRVVGVWVWNR-ETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred hcCCcEEEECeEeeeeecc--CCEEEEEEEEEC-CcEEEEEcC-EEEECCCcccC
Confidence 3479999999999999876 478999988743 555678995 99999999875
No 62
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=92.71 E-value=0.24 Score=55.06 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=48.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
+.+.+++|+.++.|++|..+++++++++|.+.|. +|+.++|+|+ .||+|||+. +.+|+...+
T Consensus 242 A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 242 AALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 4567999999999999988742368999998764 5667789996 899999975 667766554
No 63
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.55 E-value=0.27 Score=54.29 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCCeEEeccceEEEEEEeCCC-CEEEEEEEEcC-CCceeEeeccceeEeccCcch
Q psy10663 204 KNTVQVSKNSEVTKLCFDETK-TKVTGVEFRNP-QGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~-~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~ 256 (572)
..+++|+.++.|++|+.++++ ++++||.+.+. +|+.+.++|+ .||||+|.+.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 345799999999999987432 69999988653 6777889995 9999999985
No 64
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=92.55 E-value=0.32 Score=51.63 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=44.2
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
.++.+++|++++.|++|+.++++++++||... .++ .+++|+ .||||+|.++..+=++.
T Consensus 133 a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak-~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 133 AERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQ-ALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcC-EEEEcCCCcccCHHHHH
Confidence 45679999999999999876424789998764 222 578885 89999999887654443
No 65
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.52 E-value=0.27 Score=54.34 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchh
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~T 257 (572)
.+++|+.++.|++|+.++ +++++||.+.+. +|+.+.+.|+ .||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 358999999999999864 479999999865 4666788895 99999999885
No 66
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.46 E-value=0.11 Score=48.63 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=38.6
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS 264 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~S 264 (572)
.||...+++.+++|+.+++|++|..+++ + --|++. ++ .+++|+ .||||.|....|+++..-
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~-~--w~v~~~--~~--~~~~a~-~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGD-G--WTVTTR--DG--RTIRAD-RVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETT-T--EEEEET--TS---EEEEE-EEEE---SSCSB---S-T
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEecc-E--EEEEEE--ec--ceeeee-eEEEeeeccCCCCccccc
Confidence 4777766777889999999999999853 3 345554 44 677796 899999999999987543
No 67
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.16 E-value=0.88 Score=49.04 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=44.8
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
|...+.+..+++|+.+++|+.|..+++ +++ .|.+.+ .+|+..+++|+ .||+|||+ .+.+|+..+|+
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~-~v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi 255 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDD-GSW-TVTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGI 255 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCC-CCE-EEEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCC
Confidence 334433344599999999999987643 322 344432 24554578996 89999998 57778888775
No 68
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.01 E-value=0.19 Score=53.66 Aligned_cols=73 Identities=27% Similarity=0.368 Sum_probs=55.5
Q ss_pred CCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663 186 KDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQS 264 (572)
Q Consensus 186 ~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~S 264 (572)
.+.+|-...+ ... +...+.+|++.+.|++++.+ ++ +.||++.|. +|+++.++|+ .||-|||. -+-+|+...
T Consensus 161 vddaRLv~~~--a~~-A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~ 232 (532)
T COG0578 161 VDDARLVAAN--ARD-AAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMA 232 (532)
T ss_pred echHHHHHHH--HHH-HHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhh
Confidence 3455655442 222 35689999999999999998 45 999999986 5899999996 89999997 456666666
Q ss_pred CC
Q psy10663 265 GV 266 (572)
Q Consensus 265 gI 266 (572)
+.
T Consensus 233 ~~ 234 (532)
T COG0578 233 GL 234 (532)
T ss_pred cc
Confidence 53
No 69
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.73 E-value=0.75 Score=49.41 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=46.0
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
.|+..+.+..+++|+.++.|+.|..+++++. .|.+.+ ..|+..+++|+ .||+|||+ .+-+|+..+|+
T Consensus 189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w--~v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi 256 (497)
T PRK13339 189 KLAKHLESHPNAQVKYNHEVVDLERLSDGGW--EVTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGI 256 (497)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEECCCCCE--EEEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCC
Confidence 4554444556899999999999987633332 233321 24444468996 89999998 67888888875
No 70
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.95 E-value=0.87 Score=49.03 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=40.6
Q ss_pred CeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663 206 TVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 267 (572)
Q Consensus 206 nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG 267 (572)
+++|+.++.|+.|..++ +....|... +| +++|+ .||+|||+ .|.+|+..+|++
T Consensus 231 ~v~i~~~t~V~~I~~~~--~~~~~V~T~--~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~ 283 (497)
T PTZ00383 231 KISINLNTEVLNIERSN--DSLYKIHTN--RG---EIRAR-FVVVSACG-YSLLFAQKMGYG 283 (497)
T ss_pred CEEEEeCCEEEEEEecC--CCeEEEEEC--CC---EEEeC-EEEECcCh-hHHHHHHHhCCC
Confidence 38999999999998763 444455432 44 58996 89999997 588899988864
No 71
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.82 E-value=1.3 Score=47.76 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=44.6
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
++.. ..+.+++|+.+++|++|..+++ +.+ .|.+.+ ..|+..+++|+ .||+|||+ .+.+|+...|+
T Consensus 184 L~~~-a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi 249 (483)
T TIGR01320 184 LLGY-LVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGI 249 (483)
T ss_pred HHHH-HHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCC
Confidence 4444 3456999999999999987542 222 233332 24555678996 89999997 57778877775
No 72
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.54 E-value=0.73 Score=53.70 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchh
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~T 257 (572)
..++++.+++.+++|+.+ +++++||.+.+ .+|+.+.++|+ .||||+|+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence 358999999999999886 57999999875 37888899995 99999999873
No 73
>PRK07804 L-aspartate oxidase; Provisional
Probab=90.53 E-value=0.61 Score=51.02 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=42.7
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC----CCceeEeeccceeEeccCcchh
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~----~g~~~~v~A~k~VILaAGai~T 257 (572)
...++.+++|+.++.|++|+.++ +++++||.+.+. ++....++|+ .||||+|++..
T Consensus 152 ~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~~ 211 (541)
T PRK07804 152 AAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLGQ 211 (541)
T ss_pred HHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCCC
Confidence 33445679999999999999874 369999988631 2334678995 99999999763
No 74
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=90.30 E-value=0.67 Score=48.72 Aligned_cols=60 Identities=25% Similarity=0.205 Sum_probs=45.8
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
.|.....+.+++|+++++|+++..+ +++++.|.. .+|+..+++|+ .||||+|.+.+.-|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~--~~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWT--RNHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEe--eCCceEEEECC-EEEEeCCCcccCcee
Confidence 3444455679999999999999887 456766652 46777789996 899999998766653
No 75
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=89.17 E-value=0.73 Score=47.56 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=40.5
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
+.+.+|++|+ ..+|+.|..+ ++++.||... +|. .++|+ .||||+|++.+..+.
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~--~g~--~~~a~-~vVlaTGtfl~G~~~ 157 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVE--NGKVKGVVTK--DGE--EIEAD-AVVLATGTFLNGCIH 157 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEEC--TTEEEEEEET--TSE--EEEEC-EEEE-TTTGBTSEEE
T ss_pred HhcCCCeEEE-EcccceEEec--CCeEEEEEeC--CCC--EEecC-EEEEecccccCceee
Confidence 3567999997 6899999998 5899999875 565 67885 899999996555543
No 76
>PLN02661 Putative thiazole synthesis
Probab=88.27 E-value=1.3 Score=45.15 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=42.5
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEE------cCCC----ceeEeeccceeEeccCcch
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR------NPQG----KTIKVNANREVVLAANSIN 256 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~------~~~g----~~~~v~A~k~VILaAGai~ 256 (572)
++..+.+++|++|+.++.|+.|+.+ ++++.||.+. +..+ ....++|+ .||||+|.-+
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak-aVVlATGh~g 244 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK-VVVSSCGHDG 244 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEECC-EEEEcCCCCC
Confidence 4444556789999999999999987 5789999852 1112 23578995 9999999543
No 77
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=87.85 E-value=0.86 Score=49.29 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=44.1
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
...++.+.+|++++.|++|..+ ++++.+|.+. +|+ ++.|+ .||+|+|...+-+.|+
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~--~g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILE--NGKAVGVKLA--DGE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeC--CCC--EEEcC-EEEECCChHHHHHHhC
Confidence 3346678999999999999987 4788899875 554 56786 8999999887776554
No 78
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=87.73 E-value=1.2 Score=43.64 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=39.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC----CC---ceeEeeccceeEeccCcc
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QG---KTIKVNANREVVLAANSI 255 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~----~g---~~~~v~A~k~VILaAGai 255 (572)
+...|++|+.++.|+.|..++ ++++.||.+.+. .| ...+++|+ .||+|+|.-
T Consensus 114 A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~ 172 (257)
T PRK04176 114 AIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHD 172 (257)
T ss_pred HHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCC
Confidence 345799999999999998864 348999987531 12 35789995 999999953
No 79
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=87.45 E-value=1 Score=45.62 Aligned_cols=50 Identities=30% Similarity=0.380 Sum_probs=38.1
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
+...|++++.++.|+.|..+ ++++++|... +| +++|+ .||+|+|+ .|++|
T Consensus 147 ~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~--~g---~~~a~-~vV~a~G~-~~~~l 196 (337)
T TIGR02352 147 LEKLGVEIIEHTEVQHIEIR--GEKVTAIVTP--SG---DVQAD-QVVLAAGA-WAGEL 196 (337)
T ss_pred HHHcCCEEEccceEEEEEee--CCEEEEEEcC--CC---EEECC-EEEEcCCh-hhhhc
Confidence 45679999999999999876 5678787642 33 67896 89999997 44443
No 80
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=87.36 E-value=1.2 Score=48.12 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
....+.+|++++.|++|+.+ ++++++|.+.+. +|+..++.|+ .||+++..-.+.+||
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 34578999999999999988 467889987642 2333568896 799998887666644
No 81
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=86.49 E-value=0.21 Score=52.91 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
|.......|++|+.++.|..++.+ ++++++|.+.+..| ..+|+|+ .||-|.| .-.|+-++|+
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g-~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSG-RKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--cccccccccccccc-ccccccc-ccccccc---cccccccccc
Confidence 333345689999999999999998 68999999986666 7899996 9999999 3578888874
No 82
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=85.39 E-value=1.5 Score=47.42 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=43.2
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
.++.+.+|++++.|++|..+ ++++++|++. +|+ ++.|+ .||+|++...+-..|+
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~--~g~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETE--GGRATAVHLA--DGE--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHCCCEEEECCeEEEEEee--CCEEEEEEEC--CCC--EEECC-EEEECCcHHHHHHHhc
Confidence 45568999999999999987 4688888775 554 46786 7999999888887765
No 83
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=85.28 E-value=1.9 Score=47.06 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=61.6
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcch-----hhHHHHHcCCCChHHHhh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN-----SVRILQQSGVGDAALLSK 274 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~-----Tp~LLl~SgIG~~~~l~~ 274 (572)
+.+..+++|+.+..|++|+.+++ +.+.||...+. +|+.+.++| |.||||.|+.+ |+-.....|-|- .....
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g~~~~~~t~~~~~tGdG~-~ma~~ 224 (562)
T COG1053 148 LLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRA-KAVILATGGAGRLYPYTTNAHIGTGDGV-AMAYR 224 (562)
T ss_pred HHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEec-CcEEEccCCceEEEeccCCccccCCcHH-HHHHh
Confidence 34447789999999999998863 44889888765 578888889 58999999998 555555544333 24445
Q ss_pred cCCCceecCcccCccccCCccc
Q psy10663 275 YNIPLVKNLPGVGKRLSLHPMF 296 (572)
Q Consensus 275 ~Gi~~~~~lp~VG~nl~dH~~~ 296 (572)
.|.+ .. ..+..|-||..
T Consensus 225 aGa~-l~----dme~~Q~hpt~ 241 (562)
T COG1053 225 AGAP-LI----DMEFVQFHPTG 241 (562)
T ss_pred cCCc-cc----CCCccccccce
Confidence 5555 22 34567777765
No 84
>KOG0042|consensus
Probab=84.97 E-value=0.4 Score=50.48 Aligned_cols=68 Identities=26% Similarity=0.312 Sum_probs=53.0
Q ss_pred CCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhH
Q psy10663 187 DGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 187 ~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
+.+|.....+.- +.+.++++.-..+|.+++.+++ +++.|++++|. .|++++|+|+ .||=|+|-+.-.-
T Consensus 222 nDaRmnl~vAlT---A~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATGpfsDsI 290 (680)
T KOG0042|consen 222 NDARMNLAVALT---AARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAK-VVVNATGPFSDSI 290 (680)
T ss_pred chHHHHHHHHHH---HHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEE-EEEeCCCCccHHH
Confidence 445554432221 4578999999999999999875 58999999986 8999999995 9999999875443
No 85
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=84.63 E-value=1.7 Score=46.40 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCc-eeEeeccceeEeccCc
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK-TIKVNANREVVLAANS 254 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~-~~~v~A~k~VILaAGa 254 (572)
...+.+|.+++.|++|..++ +++++||++.+..|+ .+++.|+ .||+|+..
T Consensus 224 ~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 224 TSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 34578999999999998765 467889998743332 3468886 89998865
No 86
>KOG4254|consensus
Probab=84.59 E-value=0.95 Score=46.73 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=47.8
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
..+.+.+++.+.+|++++.|.+|+.| +++|.||.+. +|+ ++++ |.||=-|+-..|=.=|+-
T Consensus 268 ~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~--dG~--ev~s-k~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 268 FAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA--DGT--EVRS-KIVVSNATPWDTFEKLLP 328 (561)
T ss_pred HHHHHHHHhccceeeehhhhhheecc--CCeEEEEEec--CCc--EEEe-eeeecCCchHHHHHHhCC
Confidence 34555678899999999999999999 5899999997 776 5566 477777877777644543
No 87
>PRK06185 hypothetical protein; Provisional
Probab=84.42 E-value=3.2 Score=43.53 Aligned_cols=51 Identities=29% Similarity=0.313 Sum_probs=39.5
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
+.+.++++++.++.|+.+..+ ++++++|.+...+| +.+++|+ .||.|.|+-
T Consensus 118 ~~~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g-~~~i~a~-~vI~AdG~~ 168 (407)
T PRK06185 118 ASAYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDG-PGEIRAD-LVVGADGRH 168 (407)
T ss_pred HhhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCC-cEEEEeC-EEEECCCCc
Confidence 334579999999999999887 46788888874344 3578996 888888874
No 88
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.03 E-value=2 Score=43.87 Aligned_cols=62 Identities=31% Similarity=0.339 Sum_probs=41.3
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCC-EEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~-~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
.|+.-++++-.-.+..+++|++|..+.+++ ....|+..+.+|...++.|+ .||||.| .+|.|
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar-~vVla~G--~~P~i 161 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR-NVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES-EEEE------EE--
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC-eEEECcC--CCCCC
Confidence 577666666565588899999999986433 45566666668888999996 8999999 66654
No 89
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.37 E-value=2.6 Score=45.65 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=43.2
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
+.+.+++++.+++|+.|..+ ++ ..+|.+.+..|++.+++|+ .||.|+|+. +.+|+-
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 165 AAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRAR-ALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEec-EEEECCCcc-HHHHHh
Confidence 45678999999999999876 33 4567776555777899996 999999974 566654
No 90
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=83.12 E-value=2.7 Score=44.05 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=39.9
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
+.+.|++++.++.|+.|+.++ ++++.+|+.. +| +++|+ .||+|||+. ++.|+...|
T Consensus 193 a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~--~g---~i~a~-~vVvaagg~-~~~l~~~~g 248 (407)
T TIGR01373 193 ADRRGVDIIQNCEVTGFIRRD-GGRVIGVETT--RG---FIGAK-KVGVAVAGH-SSVVAAMAG 248 (407)
T ss_pred HHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC--Cc---eEECC-EEEECCChh-hHHHHHHcC
Confidence 456799999999999997643 3566677654 44 58886 799999985 455554333
No 91
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=83.09 E-value=3.4 Score=43.42 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=37.6
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
..+.+++|+.++.|++|..+ ++++++|+.. ++ +++|+ .||+|+|+. +..|+
T Consensus 211 ~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~--~~---~~~a~-~VV~a~G~~-~~~l~ 261 (416)
T PRK00711 211 AEQLGVKFRFNTPVDGLLVE--GGRITGVQTG--GG---VITAD-AYVVALGSY-STALL 261 (416)
T ss_pred HHHCCCEEEcCCEEEEEEec--CCEEEEEEeC--Cc---EEeCC-EEEECCCcc-hHHHH
Confidence 45679999999999999876 4566666542 23 57886 899999984 45554
No 92
>PRK07208 hypothetical protein; Provisional
Probab=82.53 E-value=3.5 Score=44.30 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=41.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
....+.+|++++.|++|..++ ++.+++|.+.+.+|+..++.|+ .||++.-.-...++|
T Consensus 228 l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~~~l~~~l 285 (479)
T PRK07208 228 LEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTAD-QVISSMPLRELVAAL 285 (479)
T ss_pred HHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcC-EEEECCCHHHHHHhc
Confidence 344578999999999999885 3456666665456776778896 788877765555554
No 93
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=82.43 E-value=3.1 Score=45.15 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=42.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
+...+++|+.+++|++|..+ ++. .+|.+.+ .+|+..+|+|+ .||+|+|+. +.+|+-
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCcc-HHHHHh
Confidence 45679999999999999876 343 4677764 25777889996 999999975 556653
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=80.63 E-value=5.7 Score=40.76 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEE
Q psy10663 153 STFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF 232 (572)
Q Consensus 153 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~ 232 (572)
+.|.+-++.+|++...- ..|.-.| ..+.+ .+-...++.. .+..|++|++++.|.+|..++ .+-.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~-----~~Gr~Fp---~sdkA-~~Iv~~ll~~-~~~~gV~i~~~~~v~~v~~~~-----~~f~l 146 (408)
T COG2081 82 EDFIDWVEGLGIALKEE-----DLGRMFP---DSDKA-SPIVDALLKE-LEALGVTIRTRSRVSSVEKDD-----SGFRL 146 (408)
T ss_pred HHHHHHHHhcCCeeEEc-----cCceecC---Cccch-HHHHHHHHHH-HHHcCcEEEecceEEeEEecC-----ceEEE
Confidence 45666777889875411 1122222 11222 2223345554 567899999999999998873 23334
Q ss_pred EcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 233 RNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 233 ~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
...+|+ +|+++ .+|||.|..--|++
T Consensus 147 ~t~~g~--~i~~d-~lilAtGG~S~P~l 171 (408)
T COG2081 147 DTSSGE--TVKCD-SLILATGGKSWPKL 171 (408)
T ss_pred EcCCCC--EEEcc-EEEEecCCcCCCCC
Confidence 434666 88997 89999999888864
No 95
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=80.44 E-value=3.4 Score=44.42 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=42.3
Q ss_pred CCCCeEEeccceEEEEEEeCC--CC-EEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDET--KT-KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~--~~-~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
++.+.+|++++.|++|+.+.+ +. ++++|++.+.++ ..++.|+ .||+|..+-...+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEECC-EEEECCChHHHHhhC
Confidence 347899999999999998742 22 488888852222 2357886 899999988888776
No 96
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=80.25 E-value=5.4 Score=41.24 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcceeeccccccCCCeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEE
Q psy10663 154 TFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233 (572)
Q Consensus 154 ~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~ 233 (572)
.+.+-++++|++...- ..|.-++. . .+.+....-|...+++.|++|++++.|+.| ++ +. ..|.+.
T Consensus 58 d~~~fF~~~Gi~~~~e-----~~grvfP~----S-~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~ 122 (376)
T TIGR03862 58 ALQDWARGLGIETFVG-----SSGRVFPV----E-MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETP 122 (376)
T ss_pred HHHHHHHHCCCceEEC-----CCCEECCC----C-CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEEC
Confidence 3455566889874311 12322221 1 233333344444467899999999999999 32 22 345443
Q ss_pred cCCCceeEeeccceeEeccCcchhhHH
Q psy10663 234 NPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 234 ~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
.+ ...++|+ .||||+|..-.|++
T Consensus 123 --~~-~~~~~a~-~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 123 --DG-QSTIEAD-AVVLALGGASWSQL 145 (376)
T ss_pred --CC-ceEEecC-EEEEcCCCcccccc
Confidence 22 2358896 89999999877764
No 97
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=79.82 E-value=4.7 Score=39.29 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=43.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC----CC---ceeEeeccceeEeccCc-chhhHHHHHc
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QG---KTIKVNANREVVLAANS-INSVRILQQS 264 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~----~g---~~~~v~A~k~VILaAGa-i~Tp~LLl~S 264 (572)
+...+++|+.++.|+.|+.++++.+++||.+... .| ...+++|+ -||.|.|. =...+.|.+-
T Consensus 110 a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak-~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 110 ALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSR-VVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcC-EEEEeecCCchHHHHHHHH
Confidence 3446799999999999998753337999987421 22 35789995 99999993 3445555543
No 98
>PLN02985 squalene monooxygenase
Probab=79.78 E-value=5.8 Score=43.06 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=43.2
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
..+..+.+.+|+++..+ +|+.++.+ .+.++||.+.+.+|++.+++|+ -||.|-|..-.-|
T Consensus 152 ~L~~~a~~~~~V~i~~g-tvv~li~~--~~~v~gV~~~~~dG~~~~~~Ad-LVVgADG~~S~vR 211 (514)
T PLN02985 152 RLRQKASSLPNVRLEEG-TVKSLIEE--KGVIKGVTYKNSAGEETTALAP-LTVVCDGCYSNLR 211 (514)
T ss_pred HHHHHHHhCCCeEEEee-eEEEEEEc--CCEEEEEEEEcCCCCEEEEECC-EEEECCCCchHHH
Confidence 34444455679999855 67777665 4678899988667888889996 8888888754433
No 99
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=5.7 Score=39.82 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=51.6
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQS 264 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~S 264 (572)
++.-+|++|++|++-+.|.=| |.+++|++|.|+ +|+.+.+.-. -|++--|-+-+..+|--+
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred HhcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 345689999999999998776 789999999986 6888888775 688989999999988754
No 100
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=78.68 E-value=4.8 Score=44.18 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=38.1
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
+.+.+|++|+ .+.|+.|..+ +++++||... +|. .+.|+ .||+|+|++-.
T Consensus 110 L~~~~nV~I~-q~~V~~Li~e--~grV~GV~t~--dG~--~I~Ak-~VIlATGTFL~ 158 (618)
T PRK05192 110 LENQPNLDLF-QGEVEDLIVE--NGRVVGVVTQ--DGL--EFRAK-AVVLTTGTFLR 158 (618)
T ss_pred HHcCCCcEEE-EeEEEEEEec--CCEEEEEEEC--CCC--EEECC-EEEEeeCcchh
Confidence 3456799985 6789999887 5789999875 453 68895 99999998643
No 101
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=76.51 E-value=9.1 Score=37.88 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=45.7
Q ss_pred hhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663 199 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQS 264 (572)
Q Consensus 199 ~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LLl~S 264 (572)
..+.++.++++++++.|++|.-+ +++.+|++.+ .+|+..++.++ .||+|.|...++.+|..+
T Consensus 184 ~~l~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 184 DRLRKNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred HHHHhCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 33333459999999999998754 3677787764 35677889997 999999977666666544
No 102
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=76.08 E-value=8 Score=40.34 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=39.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
..+.|++|+.++.|++|..++ +.+ .|+. .+| +++++ .||+|+|+ .++.++...|+
T Consensus 159 ~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~--~~g---~i~ad-~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 159 IQARGGEIRLGAEVTALDEHA--NGV-VVRT--TQG---EYEAR-TLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHhCCCEEEcCCEEEEEEecC--CeE-EEEE--CCC---EEEeC-EEEECCCc-chHHHHHHhCC
Confidence 455789999999999998763 332 3433 234 58896 89999997 57777766553
No 103
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.20 E-value=4 Score=44.01 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=40.3
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
|...++..+.+|.++++|++|+.+ +++ |+.+.+.+| ..+.|+ .||.++.. ..+..|..
T Consensus 230 L~~~~~~~Gg~I~~~~~V~~I~v~--~g~--g~~~~~~~g--~~~~ad-~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 230 LAELAREHGGEIRTGAEVSQILVE--GGK--GVGVRTSDG--ENIEAD-AVVSNADP-ALLARLLG 287 (487)
T ss_pred HHHHHHHcCCEEECCCceEEEEEe--CCc--ceEEecccc--ceeccc-eeEecCch-hhhhhhhh
Confidence 334456789999999999999999 456 555554456 677885 67766666 55554443
No 104
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=75.08 E-value=4.2 Score=42.66 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=39.2
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCCChHHHhhcCCCce
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLV 280 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG~~~~l~~~Gi~~~ 280 (572)
..+.+++|+++++|..|+.+ ++.+..|+.. + ..++.|+ .||||+|..--|++ =-+|-|= ..++++|+..+
T Consensus 119 l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~--~--~~~~~a~-~vILAtGG~S~p~~-GS~G~gy-~~a~~lGh~i~ 188 (409)
T PF03486_consen 119 LKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK--N--GGEYEAD-AVILATGGKSYPKT-GSDGSGY-RIAKKLGHTIT 188 (409)
T ss_dssp HHHHT-EEE-S--EEEEEEE--TTEEEEEEET--T--TEEEEES-EEEE----SSSGGG-T-SSHHH-HHHHHTT--EE
T ss_pred HHHcCCEEEeCCEeeeeeec--CCceeEeecc--C--cccccCC-EEEEecCCCCcccc-CCCcHHH-HHHHHCCCcEe
Confidence 45679999999999999988 4667777772 2 2478886 89999999888873 1222211 23455555444
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=74.69 E-value=9.4 Score=41.54 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=48.0
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHHHc
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQS 264 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl~S 264 (572)
+.+|+++++++.|++|.-+ ++++++|++.+. +|++.++.++ .||+|.|..-++.+|..+
T Consensus 398 ~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred cCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 4579999999999999754 578889988754 5677789997 899999998888877543
No 106
>PLN02487 zeta-carotene desaturase
Probab=74.60 E-value=5.8 Score=43.55 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred CCCCeEEeccceEEEEEEeCC-CC--EEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDET-KT--KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~-~~--~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
++.+.+|++++.|++|+.+.+ ++ +++||++. .++....+.|+ .||+|++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~-~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVS-KATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEe-cCCCceEEECC-EEEECCCHHHHHHhC
Confidence 567899999999999999842 22 58999885 23444467886 899988876665554
No 107
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=74.50 E-value=7.7 Score=40.08 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=36.4
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..+.+.+++++.++.|++|..+ ++.+ .|... +| ++.++ .||+|+|+. ++.|+.
T Consensus 153 ~~~~~~g~~~~~~~~V~~i~~~--~~~~-~v~~~--~~---~i~a~-~vV~aaG~~-~~~l~~ 205 (380)
T TIGR01377 153 ELAEAHGATVRDGTKVVEIEPT--ELLV-TVKTT--KG---SYQAN-KLVVTAGAW-TSKLLS 205 (380)
T ss_pred HHHHHcCCEEECCCeEEEEEec--CCeE-EEEeC--CC---EEEeC-EEEEecCcc-hHHHhh
Confidence 3345579999999999999876 3443 34432 33 57886 899999985 445554
No 108
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=74.40 E-value=7.7 Score=40.67 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=38.5
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCC-ceeEeeccceeEeccCcchhhHHHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG-KTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g-~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..+.+.+++|+.++.|++|..+ ++.+ .|.+.+.++ +..+++|+ .||+|+|+ .++.|+.
T Consensus 205 ~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~-~vV~a~G~-~s~~l~~ 263 (410)
T PRK12409 205 AACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFD-GVVVCAGV-GSRALAA 263 (410)
T ss_pred HHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecC-EEEECCCc-ChHHHHH
Confidence 3345679999999999999876 3443 344442221 13468896 89999996 4555543
No 109
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=73.75 E-value=10 Score=40.08 Aligned_cols=51 Identities=27% Similarity=0.379 Sum_probs=37.8
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
.+|...+.+.+++|++++.|++|+.+ ++++++|. .+|. +++|+ .||+|.|+
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~---~~g~--~i~A~-~VI~A~G~ 162 (428)
T PRK10157 112 AWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE---ADGD--VIEAK-TVILADGV 162 (428)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE---cCCc--EEECC-EEEEEeCC
Confidence 45555456679999999999999876 35666653 2343 57896 89999997
No 110
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=73.19 E-value=7.7 Score=42.62 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=41.2
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
+.+.+|++++.+ .|+.++.++ ++++.||... +|. .+.|+ .||||+|++...++..
T Consensus 106 Le~~pgV~Ile~-~Vv~li~e~-~g~V~GV~t~--~G~--~I~Ad-~VILATGtfL~g~ihi 160 (617)
T TIGR00136 106 LENQPNLSLFQG-EVEDLILED-NDEIKGVVTQ--DGL--KFRAK-AVIITTGTFLRGKIHI 160 (617)
T ss_pred HHcCCCcEEEEe-EEEEEEEec-CCcEEEEEEC--CCC--EEECC-EEEEccCcccCCCEEe
Confidence 345679999755 788887653 3689999886 454 68896 9999999997666655
No 111
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=72.77 E-value=9.7 Score=39.49 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=35.0
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
.+..+ +++|+.++.|+.|..+ +++ ..|+. .+|. .++|+ .||+|+|+- ++.|
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t--~~g~--~~~a~-~vV~a~G~~-~~~l 193 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERD--GEG-WQLLD--ANGE--VIAAS-VVVLANGAQ-AGQL 193 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEc--CCe-EEEEe--CCCC--EEEcC-EEEEcCCcc-cccc
Confidence 33456 9999999999999876 343 33433 3454 46886 899999964 4443
No 112
>PRK06126 hypothetical protein; Provisional
Probab=72.47 E-value=9.2 Score=41.89 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=37.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcch
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~ 256 (572)
.+.+|++|+.+++|++|..++ +.++ |.+.+ .+|+..+++++ -||.|-|+--
T Consensus 137 ~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~ad-~vVgADG~~S 188 (545)
T PRK06126 137 AAQPGVTLRYGHRLTDFEQDA--DGVT-ATVEDLDGGESLTIRAD-YLVGCDGARS 188 (545)
T ss_pred HhCCCceEEeccEEEEEEECC--CeEE-EEEEECCCCcEEEEEEE-EEEecCCcch
Confidence 345799999999999998774 3444 45554 35777889996 7888888633
No 113
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.37 E-value=5.3 Score=42.73 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=46.3
Q ss_pred HHhHhhhcCCCCeE--EeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 195 SIFLRAIKDKNTVQ--VSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 195 ~~yl~~~~~~~nl~--i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
..||...+++-++. |..+++|++|..++ ++ .-|...+.++...+...+ .||||.|....|++.-.-|
T Consensus 114 ~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG 182 (461)
T PLN02172 114 LAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPG 182 (461)
T ss_pred HHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCC
Confidence 36887766677777 99999999998763 32 234444223344456676 8999999998898775444
No 114
>PRK08401 L-aspartate oxidase; Provisional
Probab=71.99 E-value=8.3 Score=41.32 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=37.6
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
|.....+.+++++.+ .|++|+.+ +++++||.. +|. .++|+ .||||+|++..
T Consensus 126 L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~---~g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 126 LYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL---DGE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE---CCE--EEEeC-eEEECCCcCcC
Confidence 333345678999876 89888765 478889876 333 57885 89999999875
No 115
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=71.27 E-value=1.4 Score=33.24 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.4
Q ss_pred ccccccCCCCCeEEEEcccCCC
Q psy10663 2 LTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 2 ~A~rLae~~g~~VLvLEaG~~~ 23 (572)
+|++|+++ |++|+|+|+....
T Consensus 11 aA~~L~~~-g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 11 AAYYLAKA-GYRVTVFEKNDRL 31 (68)
T ss_dssp HHHHHHHT-TSEEEEEESSSSS
T ss_pred HHHHHHHC-CCcEEEEecCccc
Confidence 68899986 9999999999765
No 116
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=70.91 E-value=12 Score=37.37 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=48.0
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEE--cC----CCc--------eeEeeccceeEeccCcchhhHHHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR--NP----QGK--------TIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~--~~----~g~--------~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
+..++.+..++....++|.+|... +++++||.-. .+ .|+ .+++.|. .||++.|.|+--+=|.+
T Consensus 159 ~re~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhelVR 235 (552)
T COG3573 159 LREAQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHHHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHHHHH
Confidence 344556888999999999999998 6899999632 11 122 3678896 89999999987666665
Q ss_pred c
Q psy10663 264 S 264 (572)
Q Consensus 264 S 264 (572)
-
T Consensus 236 r 236 (552)
T COG3573 236 R 236 (552)
T ss_pred h
Confidence 4
No 117
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=70.76 E-value=8.6 Score=39.64 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=35.0
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
..+.+++++.+++|++|..+. +. +.+...+| +++++ .||+|+|+. +..|+
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~--~~---~~v~~~~g---~~~a~-~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADG--DG---VTVTTADG---TYEAK-KLVVSAGAW-VKDLL 208 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeC--Ce---EEEEeCCC---EEEee-EEEEecCcc-hhhhc
Confidence 345799999999999998863 32 23332344 57885 899999975 44443
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.54 E-value=16 Score=39.65 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=45.1
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcchhhHHHH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..|++|++++.|++|.-+ ++++++|.+.+. +|+..++.++ .||+|.|..-++.+|-
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence 479999999999998654 467888988754 4666789997 8999999887777764
No 119
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=66.71 E-value=6.2 Score=39.34 Aligned_cols=64 Identities=25% Similarity=0.145 Sum_probs=50.1
Q ss_pred CeecchhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 188 g~r~s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
|.|.+ .-|.....+.+..++++-.|.+..+. +++++.|... ++....++|+ ++|||.|.+-|--
T Consensus 257 GiRl~---~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr--n~~diP~~a~-~~VLAsGsffskG 320 (421)
T COG3075 257 GIRLH---NQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR--NHADIPLRAD-FYVLASGSFFSKG 320 (421)
T ss_pred hhhHH---HHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEec--ccccCCCChh-Heeeecccccccc
Confidence 55554 33444445678899999999999998 6899999776 7778899996 9999999986654
No 120
>PRK10015 oxidoreductase; Provisional
Probab=65.19 E-value=15 Score=38.97 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=37.9
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
.+|...+...+++|+.+++|+.|..+ ++++++|.. ++ .+++|+ .||+|.|+
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~---~~--~~i~A~-~VI~AdG~ 162 (429)
T PRK10015 112 PWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA---GD--DILEAN-VVILADGV 162 (429)
T ss_pred HHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe---CC--eEEECC-EEEEccCc
Confidence 45555455679999999999999876 456777653 22 468996 99999996
No 121
>PRK10262 thioredoxin reductase; Provisional
Probab=63.80 E-value=26 Score=35.22 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=44.1
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC--CCceeEeeccceeEeccCcchhhHHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP--QGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~--~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
...+..++++++++.|++|.-+ +.++.+|++.+. .+...++.++ .||+|.|..-...|+
T Consensus 193 ~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 193 DKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF 253 (321)
T ss_pred hhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence 3356789999999999998644 346778887743 2445678997 899999987777654
No 122
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=62.55 E-value=19 Score=36.81 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=31.1
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccC
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAAN 253 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAG 253 (572)
+..+..++|+.+++|+.+..+++++ .-+.+.+ ..|+..++.++ .||||.|
T Consensus 288 v~g~~~~~l~~~~~v~~~~~~~~~~--~~l~~~~~~~~~~~~~~~D-~VilATG 338 (341)
T PF13434_consen 288 VSGRGRLRLLPNTEVTSAEQDGDGG--VRLTLRHRQTGEEETLEVD-AVILATG 338 (341)
T ss_dssp HHT---SEEETTEEEEEEEEES-SS--EEEEEEETTT--EEEEEES-EEEE---
T ss_pred hcCCCCeEEeCCCEEEEEEECCCCE--EEEEEEECCCCCeEEEecC-EEEEcCC
Confidence 3355679999999999999986433 2344454 36778889997 8999998
No 123
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=62.37 E-value=17 Score=38.89 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=41.6
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
.+....++.+++|++++.|++|.-+ ++.+ .|.+...+|+..++.++ .||+|.|..-+..+
T Consensus 218 ~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~ 277 (466)
T PRK07818 218 EIAKQYKKLGVKILTGTKVESIDDN--GSKV-TVTVSKKDGKAQELEAD-KVLQAIGFAPRVEG 277 (466)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEe--CCeE-EEEEEecCCCeEEEEeC-EEEECcCcccCCCC
Confidence 3333345679999999999999754 3332 34443236766688997 89999997766654
No 124
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=61.63 E-value=14 Score=39.68 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc----------CCCceeEeeccceeEeccCcchh-hHHHHHcC
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----------PQGKTIKVNANREVVLAANSINS-VRILQQSG 265 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----------~~g~~~~v~A~k~VILaAGai~T-p~LLl~Sg 265 (572)
...++++++++.+++|.-+ ++++++|++.. ..|.+.++.++ .||+|.|..-. ..||...|
T Consensus 340 ~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccC
Confidence 3568999999999999643 47899988641 13556789997 89999995543 44554444
No 125
>PLN02612 phytoene desaturase
Probab=61.33 E-value=14 Score=40.82 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
+.+.+|++++.|++|..+++ +++++|++. +|+ ++.|+ .||+|...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~--~G~--~~~ad-~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDD-GTVKHFLLT--NGS--VVEGD-VYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECCC-CcEEEEEEC--CCc--EEECC-EEEECCCH
Confidence 45889999999999998753 667788775 565 47786 79988754
No 126
>PRK07233 hypothetical protein; Provisional
Probab=60.16 E-value=14 Score=38.96 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=37.9
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
....+.+|.+++.|++|..+ ++++++|. . +++ ++.++ .||+|+..-..++||
T Consensus 208 l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~--~~~--~~~ad-~vI~a~p~~~~~~ll 259 (434)
T PRK07233 208 IEARGGEIRLGTPVTSVVID--GGGVTGVE-V--DGE--EEDFD-AVISTAPPPILARLV 259 (434)
T ss_pred HHhcCceEEeCCCeeEEEEc--CCceEEEE-e--CCc--eEECC-EEEECCCHHHHHhhc
Confidence 34567899999999999887 35565554 2 343 57886 899999876666654
No 127
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=59.87 E-value=16 Score=39.17 Aligned_cols=56 Identities=7% Similarity=0.224 Sum_probs=41.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
..+.+++|++++.|++|.-++ +. ..|++.+.+|++.++.++ .||+|.|..-....|
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~--~~-v~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~l 289 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGG--KG-VSVAYTDADGEAQTLEVD-KLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcC--CE-EEEEEEeCCCceeEEEcC-EEEEccCCccCCCCC
Confidence 456799999999999997653 33 245555445666788997 899999987766644
No 128
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=59.44 E-value=25 Score=36.81 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=38.2
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~ 256 (572)
.++..+.+.++++++.+++|++|..++ +. +.|.+.+ ++...+++|+ .||.|-|+--
T Consensus 126 ~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~-~~v~~~~-~~~~~~i~ad-lvIgADG~~S 181 (415)
T PRK07364 126 ALQEFLQSCPNITWLCPAEVVSVEYQQ--DA-ATVTLEI-EGKQQTLQSK-LVVAADGARS 181 (415)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecC--Ce-eEEEEcc-CCcceEEeee-EEEEeCCCCc
Confidence 344444455799999999999997763 32 2355552 4455689996 8898888743
No 129
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=59.04 E-value=29 Score=37.99 Aligned_cols=54 Identities=28% Similarity=0.236 Sum_probs=39.7
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
+.+|++|+.+++|+.|..++ +. +.|.+.+.+|++.+++|+ -||-|-|+--+.|=
T Consensus 125 ~~~gv~v~~g~~v~~i~~~~--~~-v~v~~~~~~G~~~~i~ad-~vVgADG~~S~vR~ 178 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQDD--DG-VTVTLTDADGQRETVRAR-YVVGCDGANSFVRR 178 (538)
T ss_pred hCCCcEEEcCCEEEEEEEcC--Ce-EEEEEEcCCCCEEEEEEE-EEEecCCCchhHHH
Confidence 44799999999999998774 33 345666457877899996 88888887544443
No 130
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=58.42 E-value=24 Score=37.57 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=41.5
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEE-------cCC---------CceeEeeccceeEeccCcchhhHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFR-------NPQ---------GKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~-------~~~---------g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
...|+++++++.+.+|.-++ ++++++|++. +.+ |...++.++ .||+|.|-.-...+|
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l 392 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMA 392 (449)
T ss_pred HhCCCEEEeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhh
Confidence 45799999999999997543 4788888875 112 335678997 899999975444343
No 131
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=58.23 E-value=16 Score=37.49 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
+.+++|+.++.|+.|.- + .|+. .+|. ++|+ .||+|+|+ .+..|
T Consensus 158 ~~Gv~i~~~t~V~~i~~----~---~v~t--~~g~---i~a~-~VV~A~G~-~s~~l 200 (365)
T TIGR03364 158 QHGVEFHWNTAVTSVET----G---TVRT--SRGD---VHAD-QVFVCPGA-DFETL 200 (365)
T ss_pred cCCCEEEeCCeEEEEec----C---eEEe--CCCc---EEeC-EEEECCCC-Chhhh
Confidence 35899999999999842 2 3433 2443 5786 89999998 44444
No 132
>PRK12831 putative oxidoreductase; Provisional
Probab=57.82 E-value=24 Score=37.73 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=42.4
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEE-------cC---------CCceeEeeccceeEeccCcchhhHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFR-------NP---------QGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~-------~~---------~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
...|+++++++.+.+|..++ ++++++|++. |. +|.++++.++ .||+|.|-.-...+|
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~ 401 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDE-NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLIS 401 (464)
T ss_pred HHcCCEEEecccceEEEecC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhh
Confidence 35799999999999997654 4789998874 11 2445679997 899999976554444
No 133
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=56.84 E-value=26 Score=37.41 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=39.0
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
...++.+++|++++.|++|..++ +.+. |+. .+|+..++.++ .||+|.|..-+..
T Consensus 219 ~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~--~~g~~~~i~~D-~vi~a~G~~p~~~ 272 (461)
T TIGR01350 219 KALKKKGVKILTNTKVTAVEKND--DQVV-YEN--KGGETETLTGE-KVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEE--eCCcEEEEEeC-EEEEecCCcccCC
Confidence 33456789999999999998763 3333 333 35655678887 8999999877666
No 134
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=56.66 E-value=25 Score=36.72 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=38.6
Q ss_pred HHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCC-----CceeEeeccceeEeccCc
Q psy10663 195 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-----GKTIKVNANREVVLAANS 254 (572)
Q Consensus 195 ~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~-----g~~~~v~A~k~VILaAGa 254 (572)
..+|...+...+++|+..+ |..+....+.+...+|++...+ |+..+++|+ .||.|-|+
T Consensus 96 d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~-~VIgADG~ 158 (398)
T TIGR02028 96 DSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD-AVIGADGA 158 (398)
T ss_pred HHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeC-EEEECCCc
Confidence 3556555566799998885 7777653323455677765333 666789995 88888885
No 135
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=56.06 E-value=25 Score=35.46 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=38.8
Q ss_pred HHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 195 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 195 ~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
...|...+.+.+++|..+++|+.+..+. ..++.+.....+|+..+++|+ -||-|-| ..|.
T Consensus 114 ~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~ad-lvVgADG-~~S~ 173 (356)
T PF01494_consen 114 DRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEAD-LVVGADG-AHSK 173 (356)
T ss_dssp HHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEES-EEEE-SG-TT-H
T ss_pred HHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEe-eeecccC-cccc
Confidence 3455444444569999999999998884 445444444347888899996 5555555 4443
No 136
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=54.77 E-value=29 Score=36.03 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=38.9
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
.+..+.+.+|++|+.++.|+.+..++ ..++ |.+.. +|+ +++|+ +|++|=.++|.
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~-dG~--~~~a~--llVgADG~~S~ 163 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSF-DGE--TLDAD--LLVGADGANSA 163 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEcC-CCc--EEecC--EEEECCCCchH
Confidence 34444567889999999999999884 5566 66663 677 88995 55555556665
No 137
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.65 E-value=25 Score=36.28 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=42.7
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcc-hhhHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSI-NSVRIL 261 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai-~Tp~LL 261 (572)
..+++.+++++.|.+++-+.+ |+ .-+.+.. ..|+..+++.+ .||||.|-= ..|.+|
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~-g~-~~l~~~~~~~~~~~t~~~D-~vIlATGY~~~~P~fL 346 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGD-GR-YRLTLRHHETGELETVETD-AVILATGYRRAVPSFL 346 (436)
T ss_pred CCCCeeeccccceeeeecCCC-ce-EEEEEeeccCCCceEEEee-EEEEecccccCCchhh
Confidence 368999999999999998854 44 4555553 36888899997 899999965 566555
No 138
>PRK08244 hypothetical protein; Provisional
Probab=54.06 E-value=29 Score=37.38 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=38.2
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~ 256 (572)
..|...+...+++|+.+++|++|..++ +.+ .|.+.+.+| ..+++|+ .||.|.|+--
T Consensus 104 ~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~~~g-~~~i~a~-~vVgADG~~S 159 (493)
T PRK08244 104 KVLEEHARSLGVEIFRGAEVLAVRQDG--DGV-EVVVRGPDG-LRTLTSS-YVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHcCCeEEeCCEEEEEEEcC--CeE-EEEEEeCCc-cEEEEeC-EEEECCCCCh
Confidence 344443445689999999999998764 333 355554455 4578996 8999999743
No 139
>PRK07045 putative monooxygenase; Reviewed
Probab=53.20 E-value=35 Score=35.38 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=35.9
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
++..+...+|++|..+++|+.|..+++ +.++.|.+. +|+ ++.++ -||-|-| +.|
T Consensus 112 L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~--~g~--~~~~~-~vIgADG-~~S 165 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLS--DGE--RVAPT-VLVGADG-ARS 165 (388)
T ss_pred HHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeC--CCC--EEECC-EEEECCC-CCh
Confidence 343444568999999999999988753 445566654 554 67785 5555555 444
No 140
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=52.69 E-value=36 Score=35.17 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=44.2
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 267 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG 267 (572)
+....+..++++++++.|.+|..+. +. ..|++. +|+ ++.++ .||+|.|.--.+.|+..+|+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~~--~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD--SG-IRATLD--SGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC--CE-EEEEEc--CCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 3333456799999999999997652 22 234443 554 57886 899999988777888777753
No 141
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=52.34 E-value=32 Score=40.73 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=48.6
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
.++.+++|++++.|++|.-+ +++.+|++...+|...++.++ .||++.|..-+..|+...|.
T Consensus 361 L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCC
Confidence 45679999999999998643 567788877435666789997 89999999999998877763
No 142
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=50.92 E-value=36 Score=33.31 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=35.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
+|.....+.+++++.+++|+++..++ +.+ .|.+. + ...+++|+ .||+|.|.-
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~-~~~~~--~-~~~~~~a~-~vv~a~G~~ 147 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHD--DRV-VVIVR--G-GEGTVTAK-IVIGADGSR 147 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeC--CEE-EEEEc--C-ccEEEEeC-EEEECCCcc
Confidence 33333456789999999999998874 332 23332 2 23478896 899999965
No 143
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=50.37 E-value=29 Score=36.23 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=37.9
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
.+|...+...+++++++++|+.+..++ ++.++++... + .+++|+ .||.|-|+
T Consensus 99 ~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~---~--~e~~a~-~vI~AdG~ 150 (396)
T COG0644 99 KWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAG---D--DEVRAK-VVIDADGV 150 (396)
T ss_pred HHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcC---C--EEEEcC-EEEECCCc
Confidence 466655677899999999999999985 2444444332 1 789995 77777764
No 144
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=49.84 E-value=39 Score=34.86 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=35.8
Q ss_pred chhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 192 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 192 s~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
......+..+.+.+|++++.+++|++|..++ +.+ .|.+ .+|. +++|+ .||.|.|+-
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~-~v~~--~~g~--~~~ad-~vV~AdG~~ 161 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYV-RVTL--DNGQ--QLRAK-LLIAADGAN 161 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeE-EEEE--CCCC--EEEee-EEEEecCCC
Confidence 3333344443333699999999999998764 322 3433 3454 57885 899999943
No 145
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=49.82 E-value=37 Score=35.97 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=43.0
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
++....+..+++|++++.|++|.-+ +++..|.. ++. ++.++ .||+|.|..-+..+|..+|+
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~---~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIGE---DKVEGVVT---DKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEe---CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 4444455678999999999999532 34444433 233 47886 89999998777778877775
No 146
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=48.26 E-value=61 Score=34.59 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=41.5
Q ss_pred cCCCCeEEeccceEEEEEEeCC--CCEEEEEEEEcCCCceeE--eeccceeEeccCcch
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDET--KTKVTGVEFRNPQGKTIK--VNANREVVLAANSIN 256 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~--~~~a~gV~~~~~~g~~~~--v~A~k~VILaAGai~ 256 (572)
++..+++...+++|+.|+++.+ ..+|+++++. .+|+..+ +..+..||+.-|.+-
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEeCCCCEEEEECCccc
Confidence 3568999999999999999753 3468888888 6776544 456668999888763
No 147
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=47.94 E-value=27 Score=37.30 Aligned_cols=45 Identities=31% Similarity=0.361 Sum_probs=32.1
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
++.+.+++|+.++.|+.|.. ++. ..|+. .+| +|+|+ .||+|+|+.
T Consensus 192 ~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t--~~g---~v~A~-~VV~Atga~ 236 (460)
T TIGR03329 192 VALELGVEIHENTPMTGLEE---GQP-AVVRT--PDG---QVTAD-KVVLALNAW 236 (460)
T ss_pred HHHHcCCEEECCCeEEEEee---CCc-eEEEe--CCc---EEECC-EEEEccccc
Confidence 34567999999999999863 222 23432 344 47896 899999985
No 148
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.62 E-value=30 Score=38.09 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=46.5
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEec---ccCCC-CCCC-cchHHHHHHHHHHHHHHhhC
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVG---EPVIP-VEMV-TDSSAVALMLAERCATFIQS 551 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D---~Sv~P-~~~~-~NP~lTi~AlA~r~ad~I~~ 551 (572)
...|-+|+.+.-.+ .-|+|.++++ ++|||.++ ++++- .-++ ++.....+..+..+++++.+
T Consensus 498 ~~~~T~GGl~id~~---~qVLd~dg~p--I~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 498 SDLGTCGGLRADER---ARVLREDGSV--IDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred ccceecCCeeECCC---ceEECCCCCC--CCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 45677888887742 3788888885 89999997 45553 3343 78888999999999998865
No 149
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=47.26 E-value=33 Score=36.80 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=43.2
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-------CC---------CceeEeeccceeEeccCcchh-hHHHHHcC
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINS-VRILQQSG 265 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-------~~---------g~~~~v~A~k~VILaAGai~T-p~LLl~Sg 265 (572)
...++++++++.+.+|..++ ++++++|++.. .+ |++.++.++ .||+|.|..-. ..+|..+|
T Consensus 331 ~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~g 408 (467)
T TIGR01318 331 REEGVEFLFNVQPVYIECDE-DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHG 408 (467)
T ss_pred HhcCCEEEecCCcEEEEECC-CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccC
Confidence 35789999999999997654 46888887641 12 446789997 89999996654 33443343
No 150
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=46.87 E-value=36 Score=36.39 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=39.1
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
++....+..+++|++++.|++|.-++ + ...|++. .++...++.++ .||+|.|..-...
T Consensus 212 ~l~~~l~~~gV~i~~~~~V~~i~~~~--~-~~~v~~~-~~~~~~~i~~D-~ViiA~G~~p~~~ 269 (463)
T TIGR02053 212 AVEEALAEEGIEVVTSAQVKAVSVRG--G-GKIITVE-KPGGQGEVEAD-ELLVATGRRPNTD 269 (463)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEcC--C-EEEEEEE-eCCCceEEEeC-EEEEeECCCcCCC
Confidence 33344456799999999999997652 2 2344444 23344678897 8999999765554
No 151
>KOG2852|consensus
Probab=46.49 E-value=25 Score=34.60 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=46.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
.+..+.++.|++++.+.. ..|. ++ ..|+.+|......+..+...+. .||||||. -|++||..-+|
T Consensus 153 i~sea~k~~~V~lv~Gkv-~ev~-dE-k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFGKV-KEVS-DE-KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEeee-EEee-cc-cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 455677888999998864 4454 32 4788888776334445666775 89999997 68899987665
No 152
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=45.65 E-value=48 Score=34.10 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=36.3
Q ss_pred hhHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 193 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 193 ~~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
....++..+.+.+|++|+.+++|++|..++ +.+ .|.+ .+|+ ++.++ .||.|.|.-
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~-~v~~--~~g~--~~~~~-~vi~adG~~ 162 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHS--DHV-ELTL--DDGQ--QLRAR-LLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecC--Cee-EEEE--CCCC--EEEee-EEEEeCCCC
Confidence 344455555555669999999999998763 333 2443 3565 47885 788888863
No 153
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=45.30 E-value=14 Score=39.55 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=39.6
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
+.+.+|++|+-++ |+.|+.++ +.++.||... +|. .+.|+ .|||++|++-.-+|.
T Consensus 110 le~~~NL~l~q~~-v~dli~e~-~~~v~GV~t~--~G~--~~~a~-aVVlTTGTFL~G~I~ 163 (621)
T COG0445 110 LENQPNLHLLQGE-VEDLIVEE-GQRVVGVVTA--DGP--EFHAK-AVVLTTGTFLRGKIH 163 (621)
T ss_pred HhcCCCceehHhh-hHHHhhcC-CCeEEEEEeC--CCC--eeecC-EEEEeecccccceEE
Confidence 3578899998765 56677753 4579999776 665 56785 899999998665554
No 154
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=45.05 E-value=39 Score=34.56 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=41.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc----------------CCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----------------PQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----------------~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
....++++++++.+.++.-+ +++.+|++.+ .+|+..++.++ .||+|.|..-++.|+..
T Consensus 220 l~~~gi~i~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D-~vi~a~G~~p~~~l~~~ 293 (352)
T PRK12770 220 LIARGVEFLELVTPVRIIGE---GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEAD-TVVFAIGEIPTPPFAKE 293 (352)
T ss_pred HHHcCCEEeeccCceeeecC---CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECC-EEEECcccCCCchhhhc
Confidence 34579999999999997633 4566666532 13556789997 99999998877655443
No 155
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=44.52 E-value=8.5 Score=40.25 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=18.8
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|.+|+++ |.+|||||++...
T Consensus 17 ~aA~~la~~-G~~VlvlEk~~~~ 38 (396)
T COG0644 17 SAARRLAKA-GLDVLVLEKGSEP 38 (396)
T ss_pred HHHHHHHHc-CCeEEEEecCCCC
Confidence 368889976 8999999999875
No 156
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=43.73 E-value=52 Score=34.14 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=34.1
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
|.......+++|+.++.|+++..++ +.++ |++ .+|+ +++++ .||.|.|.-
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~--~~g~--~~~a~-~vV~AdG~~ 168 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDA--DRVR-LRL--DDGR--RLEAA-LAIAADGAA 168 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEE--CCCC--EEEeC-EEEEecCCC
Confidence 3333455799999999999998763 3332 443 3454 57885 888888873
No 157
>PRK12839 hypothetical protein; Provisional
Probab=43.62 E-value=36 Score=37.54 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=48.0
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEecc---cCCCC-C-CCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE---PVIPV-E-MVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~---Sv~P~-~-~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
...|-+|+.+.-.+ .-|+|.++++ ++|||.++. +++-. - .+++.....+..+..+++++.+.-
T Consensus 501 ~~~~T~GGl~in~~---~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 501 GSFGTFAGLVADGK---SRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred cccccCCCccCCCC---ceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 46777888887742 4788988886 899999984 55532 2 357788899999999999997653
No 158
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=43.42 E-value=39 Score=35.32 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=37.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
.|....++.+++|++++.|++|..+ ++ ...|+. +++ ++.++ .||+|+|....|.
T Consensus 110 ~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~---~~~--~i~ad-~VIlAtG~~s~p~ 163 (400)
T TIGR00275 110 ALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET---SGG--EYEAD-KVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE---CCc--EEEcC-EEEECCCCcccCC
Confidence 3333345678999999999999665 23 234443 233 57886 8999999987664
No 159
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=43.35 E-value=50 Score=38.29 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=46.8
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
++....+..+++|++++.|++|.-+.+ +....|.+. +|+ ++.++ .||+|+|.--+..|+..+|+
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~--dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFA--DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEEC--CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 344445567999999999999975432 345556554 565 57887 89999998888887777775
No 160
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=43.34 E-value=8.4 Score=36.24 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEc----CCC---ceeEeeccceeEeccC
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQG---KTIKVNANREVVLAAN 253 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----~~g---~~~~v~A~k~VILaAG 253 (572)
.+++|+..+.|+.|++.++ .|+.||.+.= ..+ ...+++|+ .||=|.|
T Consensus 122 aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~-~VvDaTG 175 (262)
T COG1635 122 AGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAK-AVVDATG 175 (262)
T ss_pred cCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEE-EEEeCCC
Confidence 4599999999999999853 4899987641 112 13578885 6777777
No 161
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=43.14 E-value=47 Score=35.57 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=40.7
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
+....+..|++|++++.|++|..+.+ +++..+.. .+|+..++.++ .||+|.|..-+...|
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~--~~g~~~~i~~D-~vi~a~G~~p~~~~l 286 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAE--HNGEEKTLEAD-KVLVSVGRRPNTEGI 286 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEE--eCCceEEEEeC-EEEEeeCCccCCCCC
Confidence 33334567999999999999976321 23333333 36766788997 899999987655443
No 162
>PRK08163 salicylate hydroxylase; Provisional
Probab=42.90 E-value=47 Score=34.46 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=36.8
Q ss_pred hHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 194 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 194 ~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
...++..+.+.++++++.++.|+++..++ +. |.+...+|+ ++.|+ .||.|.|+--..
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~---v~v~~~~g~--~~~ad-~vV~AdG~~S~~ 168 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DG---VTVFDQQGN--RWTGD-ALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCC--Cc---eEEEEcCCC--EEecC-EEEECCCcChHH
Confidence 33444444445679999999999998763 32 333323554 57886 888888865444
No 163
>PRK06370 mercuric reductase; Validated
Probab=42.28 E-value=53 Score=35.05 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=38.9
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
++....+..|++|++++.|.+|.-++ +. ..|.+. ..+...++.++ .||+|.|..-...
T Consensus 217 ~l~~~l~~~GV~i~~~~~V~~i~~~~--~~-~~v~~~-~~~~~~~i~~D-~Vi~A~G~~pn~~ 274 (463)
T PRK06370 217 AVREILEREGIDVRLNAECIRVERDG--DG-IAVGLD-CNGGAPEITGS-HILVAVGRVPNTD 274 (463)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcC--CE-EEEEEE-eCCCceEEEeC-EEEECcCCCcCCC
Confidence 33344456899999999999997653 22 234443 22334568887 8999999766655
No 164
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=42.27 E-value=49 Score=35.14 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
+..+.++++++.|++|..++ ++++++|... +|+ +++|+ .||....-+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~--~Ge--~i~a~-~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDE-NGKVCGVKSE--GGE--VAKCK-LVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcC-CCeEEEEEEC--CCc--EEECC-EEEECcccc
Confidence 45688999999999999875 4678888765 665 56785 777765544
No 165
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.11 E-value=51 Score=25.24 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=25.4
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEE
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~ 233 (572)
++....++.|++|++++.|.+|.-+++ + ++ |.+.
T Consensus 45 ~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~ 78 (80)
T PF00070_consen 45 ILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE 78 (80)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence 333334556999999999999998864 4 66 7776
No 166
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=41.77 E-value=65 Score=33.55 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.0
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
.++....+..++++++++.|++|.-+ +. ..|+. .+|+ ++.++ .||+|.|..-.+.|+..+|+
T Consensus 190 ~~l~~~l~~~GV~i~~~~~V~~i~~~---~~-~~v~l--~~g~--~i~aD-~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 190 RYLLQRHQQAGVRILLNNAIEHVVDG---EK-VELTL--QSGE--TLQAD-VVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEEcC---CE-EEEEE--CCCC--EEECC-EEEECCCCChhhHHHHhcCC
Confidence 34444345679999999999998642 22 23443 3565 57786 89999999877777776765
No 167
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=41.68 E-value=48 Score=34.46 Aligned_cols=50 Identities=6% Similarity=0.095 Sum_probs=33.8
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
...+++|+.+++|++|.-.+ +....|.+. .+|++.+++|+ +|++|-.++|
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~--~~~~~V~~~-~~G~~~~i~ad--~vVgADG~~S 163 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFD--SDRPYVTYE-KDGEEHRLDCD--FIAGCDGFHG 163 (392)
T ss_pred HhCCCeEEEeeeEEEEEecC--CCceEEEEE-cCCeEEEEEeC--EEEECCCCCC
Confidence 45689999999999987522 223456664 47877889995 5555555555
No 168
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=41.64 E-value=41 Score=35.88 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC---------------CCceeEeeccceeEeccCcchhhHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP---------------QGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~---------------~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
...+++|++++.|.+|.-+ ++.+++|++.+. +|...++.++ .||+|.|..-...|+
T Consensus 322 ~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~l~ 392 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGD--EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPAD-LVIKAIGQTPNPLIL 392 (457)
T ss_pred HHCCCEEEecCCcEEEEec--CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECC-EEEECccCCCCchhh
Confidence 4579999999999998754 344567766421 2455689997 899999976665544
No 169
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.49 E-value=52 Score=35.28 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=39.0
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
..+. ++|++++.|++|..++ +. ..|++.+.+|...++.++ .||+|.|..-+..+|
T Consensus 225 l~~~-v~i~~~~~v~~i~~~~--~~-~~v~~~~~~~~~~~i~~D-~vi~a~G~~pn~~~l 279 (471)
T PRK06467 225 IKKQ-FNIMLETKVTAVEAKE--DG-IYVTMEGKKAPAEPQRYD-AVLVAVGRVPNGKLL 279 (471)
T ss_pred Hhhc-eEEEcCCEEEEEEEcC--CE-EEEEEEeCCCcceEEEeC-EEEEeecccccCCcc
Confidence 3445 9999999999998653 33 345554334545678997 899999987766654
No 170
>KOG2311|consensus
Probab=41.41 E-value=31 Score=36.39 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=41.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCC--CEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~--~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
-..+||+|+.++.+.=|+.+.+. .++.||... +|. .|+|+ -|||..|+|-+.+|-
T Consensus 135 ~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~--dgt--~v~a~-~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 135 SSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLV--DGT--VVYAE-SVILTTGTFLRGQIN 191 (679)
T ss_pred ccCCcchhhhhhhhheeeccCCCCceEEEEEEEe--cCc--Eeccc-eEEEeeccceeeEEe
Confidence 45789999988876666655432 368899887 564 67896 899999999877764
No 171
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=41.28 E-value=49 Score=38.08 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=45.7
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
.+....+..+++|++++.|++|.-+ +++.+|.+. +|+ ++.++ .||+|+|.--++.|+..+|+
T Consensus 187 ~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~--dG~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 187 LLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFK--DGS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEEC--CCC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 3333345679999999999998643 456777765 565 57887 89999998777777766765
No 172
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=40.80 E-value=61 Score=36.53 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=28.3
Q ss_pred eeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 512 VNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 512 V~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
+.+++||||+-| -+.+=..+.-++|+.+|+.|..+.
T Consensus 599 ~~~~~gl~v~~G------~gs~Gl~~ap~~a~~lA~li~g~~ 634 (662)
T PRK01747 599 APRLPGLYVAGA------LGSRGLCSAPLGAELLASQIEGEP 634 (662)
T ss_pred CCCCCCeEEEec------ccccHHHHHHHHHHHHHHHHhCCC
Confidence 445789999854 566788888899999999997654
No 173
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=40.26 E-value=29 Score=37.86 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=41.9
Q ss_pred HHhHhhhcCCCCe--EEeccceEEEEEEeCCCCE--EEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 195 SIFLRAIKDKNTV--QVSKNSEVTKLCFDETKTK--VTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 195 ~~yl~~~~~~~nl--~i~~~~~V~~i~~~~~~~~--a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..||...+++-+| .|..+++|++|...++... ---|... .+|+..+-.-+ .||+|.|....|.+=.
T Consensus 87 ~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-~~g~~~~~~fD-~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 87 LEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-NDGKEETEEFD-AVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-TTTEEEEEEEC-EEEEEE-SSSCESB--
T ss_pred HHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee-cCCeEEEEEeC-eEEEcCCCcCCCCCCh
Confidence 3677665555565 6999999999998754211 1223332 45665554555 6999999999998653
No 174
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=40.23 E-value=66 Score=33.26 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=33.5
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
++..+.+.++++|+.+++|+.|..++ +.+ .|.+ .+|. ++.++ .||.|.|.-
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~v~~--~~g~--~~~a~-~vI~AdG~~ 168 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQ--GSV-RVTL--DDGE--TLTGR-LLVAADGSH 168 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcC--CeE-EEEE--CCCC--EEEeC-EEEEecCCC
Confidence 34333455789999999999997653 332 2443 3453 57885 788888863
No 175
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=40.07 E-value=97 Score=31.07 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=50.7
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
..+..+.+++|+.+++++.+.+|.-+ + +.+|.+.+..|++..+... -|+++-|-.-...|+...+
T Consensus 183 ~~~~~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~ 247 (305)
T COG0492 183 ILVERLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLG 247 (305)
T ss_pred HHHHHHHhcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhcc
Confidence 44555556669999999999999765 3 8889888555777888886 7999999887777777654
No 176
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.78 E-value=10 Score=40.98 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=21.0
Q ss_pred eccCCceEecccCCCCCCCcchHHHHHHHHH
Q psy10663 513 NGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543 (572)
Q Consensus 513 ~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~ 543 (572)
-.++|||+|++|..| +++-|.....+.+.
T Consensus 447 t~i~~LYl~Ga~t~P--G~Gv~g~~g~~~a~ 475 (487)
T COG1233 447 TPIKGLYLVGASTHP--GGGVPGVPGSAAAV 475 (487)
T ss_pred CCcCceEEeCCcCCC--CCCcchhhhhHHHH
Confidence 469999999999988 44455555555554
No 177
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=39.61 E-value=41 Score=37.78 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-------CC---------CceeEeeccceeEeccCcchh
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-------~~---------g~~~~v~A~k~VILaAGai~T 257 (572)
...+++++.++.+.+|+.++ ++++++|++.. .+ |.++++.++ .||+|.|....
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~AiG~~p~ 585 (654)
T PRK12769 517 REEGANFEFNVQPVALELNE-QGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPAD-AVIMAFGFNPH 585 (654)
T ss_pred HHcCCeEEeccCcEEEEECC-CCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECC-EEEECccCCCC
Confidence 45789999999999997654 47899998741 12 445689997 89999996544
No 178
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=38.94 E-value=46 Score=34.41 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
.+.+|++++.|++|..++ +++ .|.+ .+|+ ++.|+ .||+|+..=...+
T Consensus 222 ~g~~i~l~~~V~~I~~~~--~~v-~v~~--~~g~--~~~ad-~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 222 LGGEIRLNTPVTRIERED--GGV-TVTT--EDGE--TIEAD-AVISAVPPSVLKN 268 (450)
T ss_dssp HGGGEESSEEEEEEEEES--SEE-EEEE--TTSS--EEEES-EEEE-S-HHHHHT
T ss_pred cCceeecCCcceeccccc--ccc-cccc--ccce--EEecc-eeeecCchhhhhh
Confidence 345999999999999984 444 2444 3666 78886 7999887644443
No 179
>PRK06834 hypothetical protein; Provisional
Probab=38.65 E-value=67 Score=34.65 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=35.6
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
..|....+..+++|+.+++|+.|..++ +.+ .|++ .+|+ +++++ -||.|.|+-
T Consensus 104 ~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v-~v~~--~~g~--~i~a~-~vVgADG~~ 155 (488)
T PRK06834 104 RILAEWVGELGVPIYRGREVTGFAQDD--TGV-DVEL--SDGR--TLRAQ-YLVGCDGGR 155 (488)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcC--CeE-EEEE--CCCC--EEEeC-EEEEecCCC
Confidence 344443445689999999999998874 322 2333 3453 68896 899999974
No 180
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=38.56 E-value=54 Score=36.22 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=48.1
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEec---ccCCCC-CC-CcchHHHHHHHHHHHHHHhhCCCC
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVG---EPVIPV-EM-VTDSSAVALMLAERCATFIQSPVN 554 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D---~Sv~P~-~~-~~NP~lTi~AlA~r~ad~I~~~~~ 554 (572)
...+-+|+.++-.+ .-|+|.++++ ++|||.++ ++++-. -+ .++.....+..+..+++++.+...
T Consensus 500 ~~~~T~GGl~id~~---~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 500 GDLGTFDGLRTDVT---GEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred cccccCCCcCCCCC---ceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 45677888888742 4799999986 79999999 345432 12 377788899999999999977654
No 181
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=38.17 E-value=53 Score=36.79 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-------C---------CCceeEeeccceeEeccCcchh
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------P---------QGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-------~---------~g~~~~v~A~k~VILaAGai~T 257 (572)
...|+++++++.+.+|..++ ++++++|++.. . .|.++++.++ .||+|.|....
T Consensus 500 ~~eGv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD-~Vi~AiG~~p~ 568 (639)
T PRK12809 500 REEGVEFQFNVQPQYIACDE-DGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD-VLIMAFGFQAH 568 (639)
T ss_pred HHcCCeEEeccCCEEEEECC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECcCCCCC
Confidence 35699999999999998664 47888887631 1 2456789997 89999996543
No 182
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=38.04 E-value=70 Score=34.12 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=39.5
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
...+..+++|++++.|++|.-++ +.+ .|+.. .+|...++.++ .||+|.|..-...+|
T Consensus 221 ~~l~~~gV~i~~~~~V~~i~~~~--~~v-~v~~~-~gg~~~~i~~D-~vi~a~G~~p~~~~l 277 (462)
T PRK06416 221 RALKKRGIKIKTGAKAKKVEQTD--DGV-TVTLE-DGGKEETLEAD-YVLVAVGRRPNTENL 277 (462)
T ss_pred HHHHHcCCEEEeCCEEEEEEEeC--CEE-EEEEE-eCCeeEEEEeC-EEEEeeCCccCCCCC
Confidence 33456789999999999997653 322 34443 23555678897 899999987665553
No 183
>PRK11445 putative oxidoreductase; Provisional
Probab=37.59 E-value=90 Score=31.86 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=38.5
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.+|... ...+++++.++.|+.|..++ +. ..|.+. .+|+..+++|+ .||.|.|+--.
T Consensus 103 ~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~-~~v~~~-~~g~~~~i~a~-~vV~AdG~~S~ 158 (351)
T PRK11445 103 LWLKSL-IPASVEVYHNSLCRKIWRED--DG-YHVIFR-ADGWEQHITAR-YLVGADGANSM 158 (351)
T ss_pred HHHHHH-HhcCCEEEcCCEEEEEEEcC--CE-EEEEEe-cCCcEEEEEeC-EEEECCCCCcH
Confidence 344443 34679999999999998764 22 335554 46766689996 89999997543
No 184
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=37.58 E-value=40 Score=35.09 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=33.0
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
+.+.+|++++.|++|..++ ++++. .+. .+|+ ++.|+ .||++.-+-...+|
T Consensus 209 ~~g~~i~~~~~V~~i~~~~--~~~~~-~~~-~~g~--~~~~d-~vi~a~p~~~~~~l 258 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANA--GGIRA-LVL-SGGE--TLPAD-AVVLAVPPRHAASL 258 (419)
T ss_pred HcCCEEEcCCeeeEEEEcC--CcceE-EEe-cCCc--cccCC-EEEEcCCHHHHHHh
Confidence 4578999999999999874 33332 222 2454 56786 78887665544444
No 185
>KOG2853|consensus
Probab=37.54 E-value=70 Score=32.33 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=40.8
Q ss_pred EeccceEEEEEEe---------CCC------CEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCCC
Q psy10663 209 VSKNSEVTKLCFD---------ETK------TKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 267 (572)
Q Consensus 209 i~~~~~V~~i~~~---------~~~------~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgIG 267 (572)
.+.+-+|++.+|+ +++ .++.+|.+.-.++..++|++. .+|+|||| -|-++--+.|||
T Consensus 259 ~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~a-l~V~aAGa-~s~QvArlAgIG 330 (509)
T KOG2853|consen 259 QFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFA-LCVNAAGA-WSGQVARLAGIG 330 (509)
T ss_pred eEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEE-EEEeccCc-cHHHHHHHhccC
Confidence 3556677777776 221 156666666446667889996 99999998 578888888887
No 186
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=37.40 E-value=60 Score=35.72 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=48.6
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEecc---cCCC-CCCC-cchHHHHHHHHHHHHHHhhCCCCCcc
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE---PVIP-VEMV-TDSSAVALMLAERCATFIQSPVNVTT 557 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~---Sv~P-~~~~-~NP~lTi~AlA~r~ad~I~~~~~~~~ 557 (572)
...|-+|+.++-.+ .-|+|.++++ ++|||.++. +++- .-++ ++.....+..+..+++++.+.....+
T Consensus 483 ~~~~T~GGl~in~~---~qVld~~g~p--IpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~~ 554 (557)
T PRK12844 483 GDVGTSGGLLTDEH---ARVLREDGSV--IPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSADP 554 (557)
T ss_pred cccEECCCccCCCC---ceEECCCCCC--ccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCCC
Confidence 45677787777642 3688888876 899999984 4553 2233 67788899999999999987765544
No 187
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=37.18 E-value=12 Score=39.19 Aligned_cols=52 Identities=13% Similarity=0.019 Sum_probs=32.7
Q ss_pred ccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 490 PTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 490 ~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
+.|.-.|-+|. .=++++. ..+||||+-|. +.+=.....++|+.+|+.|.+..
T Consensus 356 w~G~r~~t~D~--~PiiG~~----~~~~l~~~~G~------~~~G~~~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 356 WAGLRPMMPNM--MPRVGRG----RRPGVFYNTGH------GHLGWTLSAATADLVAQVVAQKL 407 (410)
T ss_pred ecccCCCCCCC--CCeeCCC----CCCCEEEecCC------cccchhhcccHHHHHHHHHcCCC
Confidence 45555554432 2345542 26899999862 34556666778889999887653
No 188
>PRK07190 hypothetical protein; Provisional
Probab=37.16 E-value=66 Score=34.71 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=35.4
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
..|...+...|++|..+++|+.|..+++ . |.+...+|+ +++|+ -||.|-|+-
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~---v~v~~~~g~--~v~a~-~vVgADG~~ 164 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQA--G---CLTTLSNGE--RIQSR-YVIGADGSR 164 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCC--e---eEEEECCCc--EEEeC-EEEECCCCC
Confidence 3444333456899999999999988753 2 222213454 78995 899999973
No 189
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=37.05 E-value=13 Score=39.21 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.3
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|..|+++ |++|+|||++...
T Consensus 19 ~aA~~La~~-G~~V~llEr~~~~ 40 (428)
T PRK10157 19 VAALVLARE-GAQVLVIERGNSA 40 (428)
T ss_pred HHHHHHHhC-CCeEEEEEcCCCC
Confidence 368889975 9999999999754
No 190
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.75 E-value=68 Score=34.35 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=40.5
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEeeccceeEeccCcchhhHHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
++....+..+++|++++.|++|.-++ +. ..+.+.+ .+|...++.++ .||+|.|..-+...|
T Consensus 220 ~l~~~l~~~gV~i~~~~~V~~i~~~~--~~-v~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l 281 (466)
T PRK06115 220 TLQKALTKQGMKFKLGSKVTGATAGA--DG-VSLTLEPAAGGAAETLQAD-YVLVAIGRRPYTQGL 281 (466)
T ss_pred HHHHHHHhcCCEEEECcEEEEEEEcC--Ce-EEEEEEEcCCCceeEEEeC-EEEEccCCccccccC
Confidence 33333456799999999999997542 22 2333332 24556678897 899999987555543
No 191
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=35.98 E-value=56 Score=29.88 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEE----EEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKV----TGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a----~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
...+++++.+++|.+|... .+++ ..+... ..+...++.++ .||||.|+-
T Consensus 69 ~~~~v~~~~~~~v~~i~~~--~~~~~~~~~~~~~~-~~~~~~~~~~d-~lviAtG~~ 121 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPE--SKRVVCPAVTIQVV-ETGDGREIKYD-YLVIATGSR 121 (201)
T ss_dssp HHHTHEEEHHHTEEEEEES--TTEEEETCEEEEEE-ETTTEEEEEEE-EEEEESTEE
T ss_pred ccceEEEeecccccccccc--ccccccCcccceee-ccCCceEecCC-eeeecCccc
Confidence 4579999999999999877 3443 123232 36677899996 899999953
No 192
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=35.96 E-value=24 Score=36.76 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=33.5
Q ss_pred CCccCCCCceeccCCceEe-cccCCCCCCCcchHHHHHHH----HHHHHHHhhCCCCC
Q psy10663 503 LAVVGPDFRVNGFSNLRVV-GEPVIPVEMVTDSSAVALML----AERCATFIQSPVNV 555 (572)
Q Consensus 503 ~~VVD~~~rV~g~~nL~V~-D~Sv~P~~~~~NP~lTi~Al----A~r~ad~I~~~~~~ 555 (572)
.=+||+++++-|++|+|++ |++.++.. +|.-+++-+ |+.+|..|..++..
T Consensus 279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CEEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 3599999999999999988 56656654 433333333 44556666655544
No 193
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=35.94 E-value=16 Score=38.09 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.0
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|++|+++ |++|+|||+-.+.
T Consensus 1 ~AA~~L~~~-G~~v~vlEa~~~~ 22 (419)
T TIGR03467 1 SAAVELARA-GARVTLFEARPRL 22 (419)
T ss_pred ChHHHHHhC-CCceEEEecCCCC
Confidence 579999976 9999999997764
No 194
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=35.90 E-value=41 Score=34.47 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=31.2
Q ss_pred CccCCCCceeccCCceEecc-cCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 504 AVVGPDFRVNGFSNLRVVGE-PVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 504 ~VVD~~~rV~g~~nL~V~D~-Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
=+||+++|+.+++|+|+++- +.++..+........+.-|..+|..|...+
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 37899999989999999864 444433322222234455666666665544
No 195
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=35.71 E-value=68 Score=34.61 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=29.5
Q ss_pred eeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCCCCcc
Q psy10663 512 VNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVNVTT 557 (572)
Q Consensus 512 V~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~~~~~ 557 (572)
...++|||.|++|++|-. ++ |. ++.=|..+|+.|+++.+...
T Consensus 455 ~t~i~gLyl~G~~~~pG~-Gv-~g--~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGA-GV-PG--VLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCCCCEEEeCCCCCCCC-CH-HH--HHHHHHHHHHHHHhhccCCC
Confidence 346899999999998842 22 22 34456678888888766554
No 196
>KOG1298|consensus
Probab=35.33 E-value=48 Score=34.04 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=42.2
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
+...+|+++.-+ .|.+|+-+ .+.+.||.|.+..|++.+..|- --|+|=|-+-.
T Consensus 157 a~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhHH
Confidence 456789987655 46677655 4699999999888999999995 89999997754
No 197
>PRK06847 hypothetical protein; Provisional
Probab=35.04 E-value=89 Score=32.03 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=37.9
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
.+|.......+++|+.+++|++|..++ +. ..|.+. +|+ ++.++ .||.|.|.--..+-
T Consensus 111 ~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~-~~v~~~--~g~--~~~ad-~vI~AdG~~s~~r~ 167 (375)
T PRK06847 111 RILADAARAAGADVRLGTTVTAIEQDD--DG-VTVTFS--DGT--TGRYD-LVVGADGLYSKVRS 167 (375)
T ss_pred HHHHHHHHHhCCEEEeCCEEEEEEEcC--CE-EEEEEc--CCC--EEEcC-EEEECcCCCcchhh
Confidence 344443445689999999999998763 33 234443 564 57786 89999997555543
No 198
>PRK10015 oxidoreductase; Provisional
Probab=34.30 E-value=16 Score=38.61 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.3
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|..||++ |++|+|||++...
T Consensus 19 ~aA~~LA~~-G~~VlliEr~~~~ 40 (429)
T PRK10015 19 VAALVMARA-GLDVLVIERGDSA 40 (429)
T ss_pred HHHHHHHhC-CCeEEEEecCCCC
Confidence 368889975 9999999999764
No 199
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=34.26 E-value=59 Score=35.93 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=44.3
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEec---ccCCCC-C-CCcchHHHHHHHHHHHHHHhhCCCC
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVG---EPVIPV-E-MVTDSSAVALMLAERCATFIQSPVN 554 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D---~Sv~P~-~-~~~NP~lTi~AlA~r~ad~I~~~~~ 554 (572)
...|-+|+.+.-.+ .-|+|.++++ ++|||.++ ++++-. - .+++.....+..+..+++++.+...
T Consensus 505 ~~~~T~GGl~in~~---~qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 505 GDIGAATGLVTDAS---ARVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CccccCCCccCCCC---ceEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 44566777776642 4788888876 79999997 344432 1 2356677788889999988876643
No 200
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=34.20 E-value=71 Score=33.85 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcc
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai 255 (572)
++.|++++.+++|++|..+ ++ .|.+.+. +++..++..+ .+|||.|+-
T Consensus 69 ~~~~i~v~~~~~V~~Id~~--~~---~v~~~~~~~~~~~~~~yd-~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE--RQ---TVTVLNRKTNEQFEESYD-KLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECC--CC---EEEEEECCCCcEEeeecC-EEEECCCCC
Confidence 4579999999999999776 33 3444432 3455677886 899999985
No 201
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=33.99 E-value=63 Score=35.12 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=47.6
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEeccc---CC-CCCC-CcchHHHHHHHHHHHHHHhhCC
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP---VI-PVEM-VTDSSAVALMLAERCATFIQSP 552 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~S---v~-P~~~-~~NP~lTi~AlA~r~ad~I~~~ 552 (572)
...|-+|++++-.+ .-|+|.++++ ++|||.++.- ++ ..-+ ++|.....+..+..++.++.++
T Consensus 445 ~~~~T~GGl~in~~---~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 445 SDLGTKGGLRTDTA---ARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred ccceeCCCceECCC---ceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 45678999998842 4799999987 7999999863 44 2333 4788889999999999998654
No 202
>PRK07538 hypothetical protein; Provisional
Probab=33.80 E-value=89 Score=32.71 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
+..+|..+++|+++..+++ +.++.+... .+|+..+++|+ -||-|-| ++|.
T Consensus 117 g~~~i~~~~~v~~~~~~~~-~~~~~~~~~-~~g~~~~~~ad-lvIgADG-~~S~ 166 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDAD-VTVVFLGDR-AGGDLVSVRGD-VLIGADG-IHSA 166 (413)
T ss_pred CCcEEEcCCEEEEEEecCC-ceEEEEecc-CCCccceEEee-EEEECCC-CCHH
Confidence 3467999999999987653 333333221 35666789995 5555555 5553
No 203
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=33.21 E-value=68 Score=34.23 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=37.9
Q ss_pred hHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 194 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 194 ~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
...+|...+...|++++.++ |..+.+++ ++.+++|+.. +| .+++|+ -||=|.|.
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~--~g--~~i~ad-~~IDASG~ 209 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLD--DG--RTIEAD-FFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEET--TS--EEEEES-EEEE-SGG
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEEC--CC--CEEEEe-EEEECCCc
Confidence 44677765566799999874 88888887 5889999886 45 478896 78888884
No 204
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=33.11 E-value=61 Score=33.86 Aligned_cols=58 Identities=29% Similarity=0.365 Sum_probs=41.5
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
|.....+..|++|++++.|++|.-+ +|.+. +|.. +|.++ .||-|||.=.+|-+=..+|
T Consensus 214 ~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~--~g~~-~I~~~-tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 214 YAERALEKLGVEVLLGTPVTEVTPD-------GVTLK--DGEE-EIPAD-TVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHHHHHCCCEEEcCCceEEECCC-------cEEEc--cCCe-eEecC-EEEEcCCCcCChhhhhcCh
Confidence 4444456789999999999998655 45554 4444 89996 9999999877775433343
No 205
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=33.07 E-value=88 Score=32.16 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=37.3
Q ss_pred ccccccccc-CCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 489 HPTGTLRMG-PPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 489 H~~Gt~rMG-~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
++.|-..|. ++. .=++.. ...++|||++-| -+.+-..+.-++++.+|+.|....
T Consensus 314 ~w~g~~~~t~pd~--~P~iG~---~~~~~~l~~a~G------~~~~G~~~~p~~g~~lA~li~g~~ 368 (387)
T COG0665 314 AWAGLRPPTTPDG--LPVIGR---AAPLPNLYVATG------HGGHGFTLAPALGRLLADLILGGE 368 (387)
T ss_pred eeeccccCCCCCC--CceeCC---CCCCCCEEEEec------CCCcChhhccHHHHHHHHHHcCCC
Confidence 566666666 432 234443 233789999854 567788888899999999998754
No 206
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=33.06 E-value=65 Score=34.32 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=38.7
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
+....++.+++|++++.|++|..++ +.+ .|++ .+|+ ++.++ .||+|.|..-+..+|
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~-~v~~--~~g~--~i~~D-~vi~a~G~~p~~~~l 277 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGD--DGV-IVHL--KSGK--KIKAD-CLLYANGRTGNTDGL 277 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeC--CeE-EEEE--CCCC--EEEeC-EEEEeecCCccccCC
Confidence 3333456799999999999997653 322 2332 3454 57886 899999987777664
No 207
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=33.03 E-value=88 Score=34.43 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEE-------cC-------CCceeEeeccceeEeccCcchhhHHHH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFR-------NP-------QGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~-------~~-------~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..+++|++++.+.+|.-++ ++++ ||++. |. .|.++++.++ .||+|.|..-.+.+|.
T Consensus 317 ~~GVki~~~~~~~~i~~~~-~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDE-NGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLE 386 (564)
T ss_pred HcCCEEEecCCcEEEEcCC-CCEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhh
Confidence 4689999999999997653 3444 76542 11 3456789997 9999999766555554
No 208
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=32.82 E-value=1.5e+02 Score=31.21 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=37.7
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
...+.+++.+++|..|++.+ +.+.+|... +|. ++.++ +||||-|-=+.-.+
T Consensus 184 ~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~--~g~--~i~~~-~vvlA~Grsg~dw~ 234 (486)
T COG2509 184 ESLGGEIRFNTEVEDIEIED--NEVLGVKLT--KGE--EIEAD-YVVLAPGRSGRDWF 234 (486)
T ss_pred HhcCcEEEeeeEEEEEEecC--CceEEEEcc--CCc--EEecC-EEEEccCcchHHHH
Confidence 34579999999999999984 456666655 454 67886 99999995444433
No 209
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=32.48 E-value=14 Score=38.91 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=22.7
Q ss_pred CccccccccccCCCCCCCccCCCCceeccCCceEecccC
Q psy10663 487 TNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPV 525 (572)
Q Consensus 487 ~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv 525 (572)
.++.+|+.+.-.+ .-|+|.+++. ++|||.++.-+
T Consensus 369 ~~~t~GGl~vd~~---~~vl~~~g~p--IpGLyAaGe~~ 402 (417)
T PF00890_consen 369 IHYTMGGLKVDED---AQVLDADGQP--IPGLYAAGEAA 402 (417)
T ss_dssp EEEES-EEEBETT---SEEETTTCEE--EEEEEE-SCCE
T ss_pred cceeeEEeeeCcC---cCccCCCCCE--eCCEEEEEccc
Confidence 4556777776642 3578888887 79999998654
No 210
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=32.40 E-value=1e+02 Score=31.78 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.8
Q ss_pred hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 201 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 201 ~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
+.+.++++++.+++|+.+..++ +. +.|.+. +|+ +++|+ .||.|.|+ .|+
T Consensus 122 ~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~--~g~--~~~a~-~vI~AdG~-~S~ 170 (391)
T PRK08020 122 LEAHPNVTLRCPASLQALQRDD--DG-WELTLA--DGE--EIQAK-LVIGADGA-NSQ 170 (391)
T ss_pred HHcCCCcEEEcCCeeEEEEEcC--Ce-EEEEEC--CCC--EEEeC-EEEEeCCC-Cch
Confidence 3445699999999999997663 22 234433 454 67885 77777775 553
No 211
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=32.40 E-value=96 Score=31.95 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=33.4
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai 255 (572)
.++..+.+.+|++++ ++.|++|..++ +.+ .|.+. +|+ +++|+ .||.|.|+-
T Consensus 116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~--~g~--~~~a~-~vI~adG~~ 166 (388)
T PRK07608 116 ALWAALRFQPNLTWF-PARAQGLEVDP--DAA-TLTLA--DGQ--VLRAD-LVVGADGAH 166 (388)
T ss_pred HHHHHHHhCCCcEEE-cceeEEEEecC--CeE-EEEEC--CCC--EEEee-EEEEeCCCC
Confidence 344444444569999 99999987663 322 34443 453 68896 899898873
No 212
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=32.35 E-value=97 Score=32.13 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=35.6
Q ss_pred HHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc----CCCceeEeeccceeEeccCc
Q psy10663 195 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 195 ~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----~~g~~~~v~A~k~VILaAGa 254 (572)
..+|...+...+++++.. .|++|..++ +. ..|.+.+ .+|+..+++|+ .||.|-|+
T Consensus 95 d~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~-~~v~~~~~~~~~~~~~~~i~a~-~VI~AdG~ 153 (388)
T TIGR02023 95 DSYLRERAQKAGAELIHG-LFLKLERDR--DG-VTLTYRTPKKGAGGEKGSVEAD-VVIGADGA 153 (388)
T ss_pred HHHHHHHHHhCCCEEEee-EEEEEEEcC--Ce-EEEEEEeccccCCCcceEEEeC-EEEECCCC
Confidence 355554444568999765 699987763 33 3465553 23455789996 88888885
No 213
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.33 E-value=52 Score=34.71 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=32.0
Q ss_pred ccCCCCceeccCCceEe-cccCCCCCCCcchHH-HHHHHHHHHHHHhhCCCC
Q psy10663 505 VVGPDFRVNGFSNLRVV-GEPVIPVEMVTDSSA-VALMLAERCATFIQSPVN 554 (572)
Q Consensus 505 VVD~~~rV~g~~nL~V~-D~Sv~P~~~~~NP~l-Ti~AlA~r~ad~I~~~~~ 554 (572)
.||+++|+-+++|+|++ |.+-++..+ ..++. ..+.-|..+|..|...+.
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~-~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERP-LPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCC-CCCchHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999976 555554322 22233 234556677777766653
No 214
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=32.14 E-value=24 Score=37.52 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.3
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|.-||.+ |+|||+||+-.++
T Consensus 18 ilAa~Ls~~-GkkVLhlD~n~~y 39 (443)
T PTZ00363 18 ILSGLLSVN-GKKVLHMDRNPYY 39 (443)
T ss_pred HHHhhhhhC-CCEEEEecCCCCc
Confidence 367889964 9999999998765
No 215
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=32.11 E-value=1e+02 Score=31.96 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=34.2
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
..|...+...+++|+.++.|+.|..++ +.+ .|++. +|. ++.++ .||.|.|+ .|
T Consensus 115 ~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~--~g~--~~~ad-~vI~AdG~-~S 167 (403)
T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRD--EGV-TVTLS--DGS--VLEAR-LLVAADGA-RS 167 (403)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcC--CEE-EEEEC--CCC--EEEeC-EEEEcCCC-Ch
Confidence 344443445689999999999998763 332 34443 554 57885 77777775 44
No 216
>KOG2820|consensus
Probab=31.98 E-value=92 Score=31.51 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=42.9
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
+...+..-++.++.+..|..+.+.++.+..++|... +|. ...|+ .+|+++||- +.+||-
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt--~gs--~Y~ak-kiI~t~GaW-i~klL~ 217 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT--DGS--IYHAK-KIIFTVGAW-INKLLP 217 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEec--cCC--eeecc-eEEEEecHH-HHhhcC
Confidence 334456679999999999999988655666677665 554 35675 899999985 455553
No 217
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=31.91 E-value=98 Score=32.56 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=42.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~SgI 266 (572)
++....+..++++++++.|.+|.-+ +.+ +... +|+ ++.++ .||+|.|..-...+|..+|+
T Consensus 184 ~~~~~l~~~gV~v~~~~~v~~i~~~---~~~--v~~~--~g~--~i~~D-~vi~a~G~~p~~~~l~~~gl 243 (427)
T TIGR03385 184 IVEEELKKHEINLRLNEEVDSIEGE---ERV--KVFT--SGG--VYQAD-MVILATGIKPNSELAKDSGL 243 (427)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEecC---CCE--EEEc--CCC--EEEeC-EEEECCCccCCHHHHHhcCc
Confidence 3434445679999999999998643 222 3333 554 57886 89999998877778877764
No 218
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=31.63 E-value=2.2e+02 Score=27.00 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=36.4
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc----CCC---ceeEeeccceeEeccC
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQG---KTIKVNANREVVLAAN 253 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~----~~g---~~~~v~A~k~VILaAG 253 (572)
+..+.+ .|++|+....|+.+.+.++ +|+.||.+-- ..| ...+|+|+ .||=|.|
T Consensus 103 ~s~a~~-aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak-~ViDaTG 162 (230)
T PF01946_consen 103 ASKAID-AGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAK-VVIDATG 162 (230)
T ss_dssp HHHHHT-TTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEES-EEEE---
T ss_pred HHHHhc-CCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEe-EEEeCCC
Confidence 334444 8999999999999999863 8999998741 122 24789995 7777776
No 219
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=31.52 E-value=1.2e+02 Score=35.85 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEE-------cC--------CCceeEeeccceeEeccCcchhhH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFR-------NP--------QGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~-------~~--------~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
..++++..++.+.+|.-+++++++++|++. |. .|.+.++.++ .||+|.|-..++.
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD-~VI~AiG~~p~~~ 565 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVD-LVIMALGNTANPI 565 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECC-EEEEcCCcCCChh
Confidence 469999999999999766445688887653 11 3455789997 8999999776654
No 220
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=31.45 E-value=97 Score=36.81 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-------C--------CCceeEeeccceeEeccCcchhhHHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------P--------QGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-------~--------~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
...|++++.++.+.+|..++ ++++++|++.. . .|.+.++.++ .||+|.|-.-.+.++.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~-~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 692 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDA-EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTKANPIITQ 692 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCC-CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcCCChhhhh
Confidence 45799999999999997654 47899988741 1 2345679997 8999999776655443
No 221
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=31.38 E-value=90 Score=34.52 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=47.2
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEecc---cCCCC-C-CCcchHHHHHHHHHHHHHHhhCCCC
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGE---PVIPV-E-MVTDSSAVALMLAERCATFIQSPVN 554 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~---Sv~P~-~-~~~NP~lTi~AlA~r~ad~I~~~~~ 554 (572)
...+-+|+.++-.+ .-|+|.++++ ++|||.++. +++-. - .+++.....+..+..+++++.+...
T Consensus 504 ~~~~T~GGl~id~~---~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 504 GCLGTFAGLKTDAD---ARVLDQAGQP--IPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred cccccCCCccCCCC---CceECCCCCC--cCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 45677888888742 4799999886 899999983 44421 1 2467788889999999999976553
No 222
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=31.13 E-value=1.1e+02 Score=32.63 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=38.8
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
+....++. ++|++++.|.+|.-++ + .+|++...++...++.++ .||+|.|..-...+
T Consensus 216 ~~~~l~~~-I~i~~~~~v~~i~~~~--~--~~v~~~~~~~~~~~i~~D-~vi~a~G~~p~~~~ 272 (460)
T PRK06292 216 AQKILSKE-FKIKLGAKVTSVEKSG--D--EKVEELEKGGKTETIEAD-YVLVATGRRPNTDG 272 (460)
T ss_pred HHHHHhhc-cEEEcCCEEEEEEEcC--C--ceEEEEEcCCceEEEEeC-EEEEccCCccCCCC
Confidence 33334455 9999999999997552 2 234433235666678897 89999998766654
No 223
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=31.06 E-value=11 Score=35.49 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.2
Q ss_pred CccccccCCCCCeEEEEcccC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGP 21 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~ 21 (572)
++|+.||++ |+||+|+|+..
T Consensus 31 ~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 31 TAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp HHHHHHHHH-TS-EEEEESSS
T ss_pred HHHHHHHHC-CCeEEEEecCC
Confidence 368899987 99999999973
No 224
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=30.96 E-value=88 Score=24.29 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=27.5
Q ss_pred cCCceEecccCCCCCCCcchHHHHHHHHHHHH
Q psy10663 515 FSNLRVVGEPVIPVEMVTDSSAVALMLAERCA 546 (572)
Q Consensus 515 ~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~a 546 (572)
..|.+|+|..+.|..|......-++++|.-++
T Consensus 38 ~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 38 VSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred CCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999888888886544
No 225
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=30.80 E-value=81 Score=33.53 Aligned_cols=55 Identities=25% Similarity=0.198 Sum_probs=36.6
Q ss_pred CCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 205 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 205 ~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
...+|..++.|+.+.+++++ ..--|.+. +|...++.++ .||+|+|.++.|.+=--
T Consensus 97 ~~~~i~~~~~v~~~~~~~~~-~~w~V~~~--~~~~~~~~a~-~vV~ATG~~~~P~iP~~ 151 (443)
T COG2072 97 LRFQIRFNTRVEVADWDEDT-KRWTVTTS--DGGTGELTAD-FVVVATGHLSEPYIPDF 151 (443)
T ss_pred ceeEEEcccceEEEEecCCC-CeEEEEEc--CCCeeeEecC-EEEEeecCCCCCCCCCC
Confidence 34566677777778888643 34445554 4443338896 89999999888876433
No 226
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=30.67 E-value=1.3e+02 Score=32.84 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=37.3
Q ss_pred HhHhh-hcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 196 IFLRA-IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 196 ~yl~~-~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.+|.. +.+.++++|..+++|+++..++ +.+ .+.+.+.+| ..+++++ -||.|-|+--+
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v-~v~~~~~~g-~~~i~ad-~vVgADG~~S~ 186 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHD--DGV-TLTVETPDG-PYTLEAD-WVIACDGARSP 186 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEE-EEEEECCCC-cEEEEeC-EEEECCCCCcH
Confidence 34433 3345689999999999998774 222 244443344 3578995 88888887543
No 227
>PRK09126 hypothetical protein; Provisional
Probab=30.58 E-value=1.1e+02 Score=31.48 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=33.8
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
.+..+.+..+++|+.++.|+.+..++ +. ..|++. +|+ +++|+ .||.|-|.
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~--~~-~~v~~~--~g~--~~~a~-~vI~AdG~ 165 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDD--DG-AQVTLA--NGR--RLTAR-LLVAADSR 165 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcC--Ce-EEEEEc--CCC--EEEeC-EEEEeCCC
Confidence 33333455799999999999998763 32 235543 554 67885 77777775
No 228
>PRK13984 putative oxidoreductase; Provisional
Probab=30.20 E-value=1e+02 Score=34.34 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=41.9
Q ss_pred CCCeEEeccceEEEEEEeCCCCEEEEEEEEc------CC---------CceeEeeccceeEeccCcchhhHHHH
Q psy10663 204 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN------PQ---------GKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 204 ~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~------~~---------g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
..++++++++.+.+|..+ ++++++|++.+ .+ |...++.++ .||+|.|..-...+|.
T Consensus 474 ~~GV~i~~~~~~~~i~~~--~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD-~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIE--NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEAD-MVVEAIGQAPDYSYLP 544 (604)
T ss_pred HcCCEEEeCCCCEEEEcc--CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECC-EEEEeeCCCCChhhhh
Confidence 469999999999998654 57888887641 12 345689997 8999999876666654
No 229
>PLN02576 protoporphyrinogen oxidase
Probab=29.51 E-value=1.1e+02 Score=32.84 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=35.6
Q ss_pred eEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHH
Q psy10663 207 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 207 l~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
-+|.+++.|++|..+.+ ++ ..|.+...+|+ .++.++ .||+|.-+-...+||.
T Consensus 252 ~~i~l~~~V~~I~~~~~-~~-~~v~~~~~~g~-~~~~ad-~VI~a~P~~~l~~ll~ 303 (496)
T PLN02576 252 DKVKLNWKVLSLSKNDD-GG-YSLTYDTPEGK-VNVTAK-AVVMTAPLYVVSEMLR 303 (496)
T ss_pred CcEEcCCEEEEEEECCC-Cc-EEEEEecCCCc-eeEEeC-EEEECCCHHHHHHHhc
Confidence 47999999999998743 22 34555433443 468886 7999887766666654
No 230
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=28.83 E-value=19 Score=37.38 Aligned_cols=33 Identities=21% Similarity=0.085 Sum_probs=22.9
Q ss_pred CCceEecccCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy10663 516 SNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQ 550 (572)
Q Consensus 516 ~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~ 550 (572)
+|||+|+..+.|...+. +--.+.=++|+|+.|+
T Consensus 418 ~~l~~aG~~~~~~~~~~--~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYPGG--IEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSSTTS--HHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCCCc--HHHHHHHHHHHHHHhC
Confidence 89999999999876532 2234456778888874
No 231
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=28.53 E-value=89 Score=33.32 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=36.9
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 259 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~ 259 (572)
....+.+++|++++.|++|..+ +.. +.+. .+|+..++.++ .||+|.|..-+..
T Consensus 219 ~~L~~~GI~i~~~~~V~~i~~~--~~~---v~~~-~~g~~~~i~~D-~vivA~G~~p~~~ 271 (458)
T PRK06912 219 EKLENDGVKIFTGAALKGLNSY--KKQ---ALFE-YEGSIQEVNAE-FVLVSVGRKPRVQ 271 (458)
T ss_pred HHHHHCCCEEEECCEEEEEEEc--CCE---EEEE-ECCceEEEEeC-EEEEecCCccCCC
Confidence 3345679999999999999754 232 3333 25655678897 8999999665444
No 232
>KOG1298|consensus
Probab=28.31 E-value=22 Score=36.45 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.7
Q ss_pred CccccccCCCCCeEEEEcccCCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDAP 24 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~~ 24 (572)
++|+.|+++ |+||+|||+--..+
T Consensus 59 aLa~~L~kd-GRrVhVIERDl~EP 81 (509)
T KOG1298|consen 59 ALAYALAKD-GRRVHVIERDLSEP 81 (509)
T ss_pred HHHHHHhhC-CcEEEEEecccccc
Confidence 378899986 99999999975543
No 233
>PRK06116 glutathione reductase; Validated
Probab=28.28 E-value=1.1e+02 Score=32.48 Aligned_cols=54 Identities=7% Similarity=0.120 Sum_probs=37.2
Q ss_pred hhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 200 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 200 ~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
...+..+++|++++.|.+|.-+++ +.+ .|++. +|+ ++.++ .||+|.|..-....
T Consensus 216 ~~L~~~GV~i~~~~~V~~i~~~~~-g~~-~v~~~--~g~--~i~~D-~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 216 EEMEKKGIRLHTNAVPKAVEKNAD-GSL-TLTLE--DGE--TLTVD-CLIWAIGREPNTDG 269 (450)
T ss_pred HHHHHCCcEEECCCEEEEEEEcCC-ceE-EEEEc--CCc--EEEeC-EEEEeeCCCcCCCC
Confidence 334567999999999999986532 322 34443 554 57886 89999997655543
No 234
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=28.06 E-value=1.1e+02 Score=32.64 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=41.5
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH--HHcCC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL--QQSGV 266 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL--l~SgI 266 (572)
++....++.+++|++++.|++|.-++ +.+ .|++ .+|+ ++.++ .||+|.|..-...+| ..+|+
T Consensus 223 ~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~--~~g~--~l~~D-~vl~a~G~~pn~~~l~l~~~gl 286 (466)
T PRK07845 223 VLEEVFARRGMTVLKRSRAESVERTG--DGV-VVTL--TDGR--TVEGS-HALMAVGSVPNTAGLGLEEAGV 286 (466)
T ss_pred HHHHHHHHCCcEEEcCCEEEEEEEeC--CEE-EEEE--CCCc--EEEec-EEEEeecCCcCCCCCCchhhCc
Confidence 34444556799999999999997553 322 2333 3554 57786 899999987776653 44453
No 235
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=27.48 E-value=19 Score=36.37 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=22.9
Q ss_pred ceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHH
Q psy10663 511 RVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATF 548 (572)
Q Consensus 511 rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~ 548 (572)
++-+.+|||++- ..+.+-.....++|+.+||.
T Consensus 327 ~~~~~~~l~~~~------g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 327 ELPGSPNLYLAG------GHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp EESSEEEEEEEE------CETTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCEEEEE------CCCchHHHHHHHHHHHHhcC
Confidence 445688999993 34556677777888888774
No 236
>PRK06184 hypothetical protein; Provisional
Probab=27.44 E-value=1.5e+02 Score=31.99 Aligned_cols=50 Identities=18% Similarity=0.079 Sum_probs=33.4
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcch
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 256 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~ 256 (572)
....+++|..+++|++|..+++ .+ -|.+.+.+ ...+++|+ -||.|.|+--
T Consensus 119 l~~~gv~i~~~~~v~~i~~~~~--~v-~v~~~~~~-~~~~i~a~-~vVgADG~~S 168 (502)
T PRK06184 119 LAELGHRVEFGCELVGFEQDAD--GV-TARVAGPA-GEETVRAR-YLVGADGGRS 168 (502)
T ss_pred HHHCCCEEEeCcEEEEEEEcCC--cE-EEEEEeCC-CeEEEEeC-EEEECCCCch
Confidence 3445899999999999987642 23 23333222 33578996 8888888643
No 237
>PRK06475 salicylate hydroxylase; Provisional
Probab=27.43 E-value=1.2e+02 Score=31.64 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=34.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
++..+.+.++++|..+++|+++..++ +. +.|.+.+.++ ..++.|+ +|++|-.++|.
T Consensus 113 L~~~~~~~~~i~v~~~~~v~~~~~~~--~~-v~v~~~~~~~-~~~~~ad--lvIgADG~~S~ 168 (400)
T PRK06475 113 LLDACRNNPGIEIKLGAEMTSQRQTG--NS-ITATIIRTNS-VETVSAA--YLIACDGVWSM 168 (400)
T ss_pred HHHHHHhcCCcEEEECCEEEEEecCC--Cc-eEEEEEeCCC-CcEEecC--EEEECCCccHh
Confidence 33333345689999999999997653 32 3344442222 2357785 66666666664
No 238
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=26.59 E-value=30 Score=35.77 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.8
Q ss_pred cCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy10663 515 FSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSP 552 (572)
Q Consensus 515 ~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~ 552 (572)
.+||||+-| -+.|=....-++|+.+|+.|..+
T Consensus 331 ~~g~~~a~G------~~g~G~~~ap~~g~~la~~i~~~ 362 (381)
T TIGR03197 331 YPGLYVLGG------LGSRGLTSAPLAAEILAAQICGE 362 (381)
T ss_pred CCCeEEEec------ccchHHHHHHHHHHHHHHHHhCC
Confidence 689999865 45677888888999999999654
No 239
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=26.53 E-value=1.1e+02 Score=35.16 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-------CC---------CceeEeeccceeEeccCcchhhHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-------~~---------g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
...+++++.++.+.+|..++ ++++++|++.. .+ |.++++.++ .||+|.|..-...+
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~l 690 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADE-KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVD-LVIVSVGVSPNPLV 690 (752)
T ss_pred HHcCCEEEecCcceEEEECC-CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECC-EEEECcCCCCCccc
Confidence 45699999999999997654 47899988741 12 345679997 89999997655443
No 240
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=26.46 E-value=1.9e+02 Score=31.77 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=40.2
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEc-CCCceeEee--ccce----eEeccCcchhhHHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVN--ANRE----VVLAANSINSVRILQ 262 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~-~~g~~~~v~--A~k~----VILaAGai~Tp~LLl 262 (572)
....+++|++++.|++|.-+ +++..|.+.+ .+|+..++. ++ . ||+|.|..-...|+.
T Consensus 189 ~~~~gV~i~~~~~V~~i~~~---~~v~~v~~~~~~~G~~~~~~~~~D-~~~~~Vi~a~G~~Pn~~l~~ 252 (555)
T TIGR03143 189 KNHPKIEVKFNTELKEATGD---DGLRYAKFVNNVTGEITEYKAPKD-AGTFGVFVFVGYAPSSELFK 252 (555)
T ss_pred HhCCCcEEEeCCEEEEEEcC---CcEEEEEEEECCCCCEEEEecccc-ccceEEEEEeCCCCChhHHh
Confidence 34569999999999998632 4566666653 356655543 54 4 999999987777653
No 241
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.92 E-value=1.1e+02 Score=33.89 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=46.3
Q ss_pred CCccccccccccCCCCCCCccCCCCceeccCCceEec---ccCCCC-CCC-cchHHHHHHHHHHHHHHhhCCCCCcc
Q psy10663 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVG---EPVIPV-EMV-TDSSAVALMLAERCATFIQSPVNVTT 557 (572)
Q Consensus 486 ~~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D---~Sv~P~-~~~-~NP~lTi~AlA~r~ad~I~~~~~~~~ 557 (572)
...+-+|+.+.-.+ .-|+|.++++ ++|||.++ ++++-. -++ ++.....+..+..+++++.+......
T Consensus 503 ~~~~T~GGl~in~~---~qVLd~~g~p--IpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~ 574 (584)
T PRK12835 503 GDLGTSGGLRTDEH---ARVLREDDSV--IPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAA 574 (584)
T ss_pred cccccCcCccCCCC---ceEECCCCCC--ccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcC
Confidence 45566777776642 4788888886 79999998 555542 222 55677788888888888877654433
No 242
>PRK14727 putative mercuric reductase; Provisional
Probab=25.88 E-value=1e+02 Score=33.07 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=38.6
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
.+....++.+++|++++.|++|..++ +. +.+...++ ++.++ .||+|.|..-+..+|
T Consensus 233 ~l~~~L~~~GV~i~~~~~V~~i~~~~--~~---~~v~~~~g---~i~aD-~VlvA~G~~pn~~~l 288 (479)
T PRK14727 233 TLTACFEKEGIEVLNNTQASLVEHDD--NG---FVLTTGHG---ELRAE-KLLISTGRHANTHDL 288 (479)
T ss_pred HHHHHHHhCCCEEEcCcEEEEEEEeC--CE---EEEEEcCC---eEEeC-EEEEccCCCCCccCC
Confidence 33334566799999999999997653 22 23332233 47786 899999998877764
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=25.85 E-value=1e+02 Score=32.58 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-CCceeEeeccceeEeccCcc
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSI 255 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-~g~~~~v~A~k~VILaAGai 255 (572)
.+.+++++.++.|++|..+. + .|.+.+. +|....+.++ .+|||.|+-
T Consensus 67 ~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~~~~~~~yd-~lviAtG~~ 114 (444)
T PRK09564 67 IKSGIDVKTEHEVVKVDAKN--K---TITVKNLKTGSIFNDTYD-KLMIATGAR 114 (444)
T ss_pred HHCCCeEEecCEEEEEECCC--C---EEEEEECCCCCEEEecCC-EEEECCCCC
Confidence 45689999999999998763 3 3444432 3555666686 899999984
No 244
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=25.55 E-value=23 Score=35.31 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=16.9
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
|+|..||+. |++|||||+-+..
T Consensus 15 V~A~~a~~~-gk~VLIvekR~HI 36 (374)
T COG0562 15 VIAEVAAQL-GKRVLIVEKRNHI 36 (374)
T ss_pred HHHHHHHHc-CCEEEEEeccccC
Confidence 467767764 9999999996653
No 245
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=25.14 E-value=2.2e+02 Score=25.09 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=23.7
Q ss_pred ccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 211 KNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 211 ~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
...+|+.|...++ + ..| ...+|. .+.++ .||||.|.
T Consensus 120 ~~~~V~~i~~~~~-~--~~v--~~~~g~--~~~~d-~VvLa~Gh 155 (156)
T PF13454_consen 120 VRAEVVDIRRDDD-G--YRV--VTADGQ--SIRAD-AVVLATGH 155 (156)
T ss_pred EeeEEEEEEEcCC-c--EEE--EECCCC--EEEeC-EEEECCCC
Confidence 3568999888753 2 122 224664 45886 89999984
No 246
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=25.00 E-value=1.8e+02 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=34.1
Q ss_pred hhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 199 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 199 ~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
..+...+|++|+.+++|++++.++ ..+ .|.+. +|. +++++ -||.|-|+ +|+
T Consensus 118 ~~~~~~~~i~i~~~~~v~~~~~~~--~~~-~v~~~--~g~--~~~~~-lvIgADG~-~S~ 168 (384)
T PRK08849 118 QQFAQYPNLTLMCPEKLADLEFSA--EGN-RVTLE--SGA--EIEAK-WVIGADGA-NSQ 168 (384)
T ss_pred HHHHhCCCeEEECCCceeEEEEcC--CeE-EEEEC--CCC--EEEee-EEEEecCC-Cch
Confidence 333456789999999999998874 222 24443 554 77885 67777775 443
No 247
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=24.84 E-value=1.6e+02 Score=31.33 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=36.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhh
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 258 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp 258 (572)
.+..++++++++.|+++.-++ +. +.|.+. +|...+++++ .|++|.|-.-+.
T Consensus 224 l~~~gv~i~~~~~v~~~~~~~--~~-v~v~~~--~g~~~~~~ad-~vLvAiGR~Pn~ 274 (454)
T COG1249 224 LEKGGVKILLNTKVTAVEKKD--DG-VLVTLE--DGEGGTIEAD-AVLVAIGRKPNT 274 (454)
T ss_pred HHhCCeEEEccceEEEEEecC--Ce-EEEEEe--cCCCCEEEee-EEEEccCCccCC
Confidence 344889999999999998764 23 556565 4444478897 899999955333
No 248
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=24.70 E-value=30 Score=34.68 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.5
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
|+|.+||++ |++||+||.-+..
T Consensus 19 vaa~elA~a-G~~V~ildQEgeq 40 (552)
T COG3573 19 VAAAELADA-GKRVLILDQEGEQ 40 (552)
T ss_pred HHHHHHHhc-CceEEEEcccccc
Confidence 578999986 9999999987654
No 249
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=24.52 E-value=27 Score=33.99 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.8
Q ss_pred ccccccCCCCCeEEEEcccCC
Q psy10663 2 LTAKLLAQSGCSVLILEAGPD 22 (572)
Q Consensus 2 ~A~rLae~~g~~VLvLEaG~~ 22 (572)
+|.+|++. |++|+|||++..
T Consensus 36 aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 36 AAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred HHHHHHHC-CCcEEEEecCCC
Confidence 57888875 999999999864
No 250
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=24.52 E-value=1.2e+02 Score=32.65 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=41.0
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCc-eeEeeccceeEeccCcchhhHHHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK-TIKVNANREVVLAANSINSVRILQ 262 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~-~~~v~A~k~VILaAGai~Tp~LLl 262 (572)
++....+..|++|++++.+++|.-.+ +. ..|++. ++. ..++.++ .||+|.|-.-++.+|.
T Consensus 225 ~l~~~L~~~gV~i~~~~~v~~v~~~~--~~-~~v~~~--~~~~~~~i~~D-~vl~a~G~~pn~~~l~ 285 (484)
T TIGR01438 225 KVGEHMEEHGVKFKRQFVPIKVEQIE--AK-VKVTFT--DSTNGIEEEYD-TVLLAIGRDACTRKLN 285 (484)
T ss_pred HHHHHHHHcCCEEEeCceEEEEEEcC--Ce-EEEEEe--cCCcceEEEeC-EEEEEecCCcCCCcCC
Confidence 33334456799999999999987542 22 335554 332 3468897 8999999887777653
No 251
>PRK07121 hypothetical protein; Validated
Probab=24.43 E-value=97 Score=33.39 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=41.5
Q ss_pred CccccccccccCCCCCCCccCCCCceeccCCceEec---ccCCC-CCCCcchHHHHHHHHHHHHHHhhCC
Q psy10663 487 TNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVG---EPVIP-VEMVTDSSAVALMLAERCATFIQSP 552 (572)
Q Consensus 487 ~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D---~Sv~P-~~~~~NP~lTi~AlA~r~ad~I~~~ 552 (572)
.++.+|+.+.-.+ ..-|+|.++++ ++|||.++ ++++- .-+++|.....+..+..+++++.++
T Consensus 425 ~~~T~GGl~id~~--~~qVld~~g~p--I~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 425 PGFTLGGLRVDED--TGEVLRADGAP--IPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ceeeccCeeECCC--cceEECCCCCC--cCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4455565555521 02466666654 79999998 45553 2346888899999999999988754
No 252
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=24.37 E-value=30 Score=36.92 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=33.1
Q ss_pred CccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy10663 487 TNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSP 552 (572)
Q Consensus 487 ~~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~ 552 (572)
.++++|...|-+|.. =++. ++-+.+||||+-| -++|=.....+.++.+||.|..+
T Consensus 340 ~~~W~G~~~~t~D~~--P~iG---~~~~~~gl~~a~G------~~G~Gv~~a~~~G~~lA~li~g~ 394 (460)
T TIGR03329 340 AASWNGPSDRSVTGL--PFFG---RLNGQPNVFYGFG------YSGNGVAPSRMGGQILSSLVLGL 394 (460)
T ss_pred eEEEeceeCCCCCCC--ceee---eecCCCCEEEEeC------cCCCChhHHHHHHHHHHHHhcCC
Confidence 355666666664322 2333 2334688888644 34566666777778888888653
No 253
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=24.35 E-value=29 Score=37.42 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=25.0
Q ss_pred ccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy10663 514 GFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSP 552 (572)
Q Consensus 514 g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~ 552 (572)
.++|||.|++|++|- +++. .++.=+..+|+.|+++
T Consensus 457 ~i~gLyl~G~~~~pG-~Gv~---g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 457 PVKGLWLCGDSIHPG-EGTA---GVSYSALMVVRQILAS 491 (492)
T ss_pred CCCCeEEecCccCCC-CcHH---HHHHHHHHHHHHHhhc
Confidence 799999999999984 3332 2444567788877653
No 254
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=23.90 E-value=1.5e+02 Score=31.63 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=35.9
Q ss_pred hHHhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcC-----CCceeEeeccceeEeccCc
Q psy10663 194 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-----QGKTIKVNANREVVLAANS 254 (572)
Q Consensus 194 ~~~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~-----~g~~~~v~A~k~VILaAGa 254 (572)
...+|...+...+++++.+ +|++|..+.+++..+.|.+.+. +|+..+++|+ .||-|-|+
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~-~VIgADG~ 197 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVD-AVIGADGA 197 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeC-EEEEcCCc
Confidence 3455655445568999765 5888876432223335555532 2556789995 77777775
No 255
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.27 E-value=1.4e+02 Score=31.75 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=38.3
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
.+..++++++++.|++|.-+. ++ ...|++. +|+ .++.++ .||+|.|..-...+|
T Consensus 217 l~~~gI~i~~~~~v~~i~~~~-~~-~~~v~~~--~g~-~~i~~D-~vi~a~G~~pn~~~l 270 (450)
T TIGR01421 217 YEKEGINVHKLSKPVKVEKTV-EG-KLVIHFE--DGK-SIDDVD-ELIWAIGRKPNTKGL 270 (450)
T ss_pred HHHcCCEEEcCCEEEEEEEeC-Cc-eEEEEEC--CCc-EEEEcC-EEEEeeCCCcCcccC
Confidence 456799999999999997543 22 2334443 443 468887 899999988777654
No 256
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=23.22 E-value=1.3e+02 Score=32.42 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=40.0
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
.+....++.+++|++++.|++|..+++ + ...|++. +|+ ++.++ .||+|.|-.-...+|
T Consensus 236 ~l~~~L~~~GI~i~~~~~v~~i~~~~~-~-~~~v~~~--~g~--~i~~D-~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 236 ELTKQLRANGINIMTNENPAKVTLNAD-G-SKHVTFE--SGK--TLDVD-VVMMAIGRVPRTQTL 293 (486)
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEEcCC-c-eEEEEEc--CCC--EEEcC-EEEEeeCCCcCcccC
Confidence 333345668999999999999976532 2 3445443 454 57887 899999977666654
No 257
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=22.99 E-value=30 Score=35.47 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.9
Q ss_pred ccccccCCCCCeEEEEcccC
Q psy10663 2 LTAKLLAQSGCSVLILEAGP 21 (572)
Q Consensus 2 ~A~rLae~~g~~VLvLEaG~ 21 (572)
+|++|++. |++|+|||++.
T Consensus 15 ~A~~L~~~-G~~V~vle~~~ 33 (365)
T TIGR03364 15 HAYAAARR-GLSVTVIERSS 33 (365)
T ss_pred HHHHHHHC-CCeEEEEeCCC
Confidence 68899986 99999999985
No 258
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=22.62 E-value=1.3e+02 Score=31.94 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=37.3
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
+....++.++++++++.|++|.-+ ++. +.+...++ ++.++ .||+|.|.--+..+|
T Consensus 205 l~~~l~~~gV~v~~~~~v~~i~~~--~~~---v~v~~~~g---~i~~D-~vl~a~G~~pn~~~l 259 (441)
T PRK08010 205 IATILRDQGVDIILNAHVERISHH--ENQ---VQVHSEHA---QLAVD-ALLIASGRQPATASL 259 (441)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc--CCE---EEEEEcCC---eEEeC-EEEEeecCCcCCCCc
Confidence 333456679999999999999765 232 23332233 36786 899999987766654
No 259
>PRK09897 hypothetical protein; Provisional
Probab=22.48 E-value=2.2e+02 Score=31.13 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=28.7
Q ss_pred CceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q psy10663 510 FRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPVN 554 (572)
Q Consensus 510 ~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~~ 554 (572)
+++-|..|=+|.=+ .+|-+.+-||-.--....+.++..|.+...
T Consensus 478 ~~~~~~~~~~~~~~-a~p~~~~~~p~~~g~~~~~~~~~~~~~~~~ 521 (534)
T PRK09897 478 LQQPEDIRGRVAFG-ALPWLMHDQPFVQGLTACAEIGEAMARAVV 521 (534)
T ss_pred eeCCCccCcceEEE-ecchhccCCCchhhhHHHHHHHHHHHHHHh
Confidence 45555444444433 368888999988777777777777666553
No 260
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=22.43 E-value=1.7e+02 Score=30.39 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=31.8
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
....+++|+.+++|+.|..++ +.+ .|.+ .+|+ +++|+ .||.|.|+
T Consensus 122 ~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~--~~g~--~~~a~-~vVgAdG~ 166 (405)
T PRK05714 122 LHDSDIGLLANARLEQMRRSG--DDW-LLTL--ADGR--QLRAP-LVVAADGA 166 (405)
T ss_pred HhcCCCEEEcCCEEEEEEEcC--CeE-EEEE--CCCC--EEEeC-EEEEecCC
Confidence 344689999999999997663 322 2443 3553 57886 89999997
No 261
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=22.33 E-value=32 Score=35.38 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=26.6
Q ss_pred ceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 511 RVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 511 rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
++-+++||||+-| -+.|-..-.-++|+.+|+.|...-
T Consensus 325 ~~~~~~gl~~~~G------~~g~G~~~ap~~g~~la~li~~~~ 361 (376)
T PRK11259 325 TLPGHPNVLVASG------CSGHGFKFASVLGEILADLAQDGT 361 (376)
T ss_pred cCCCCCCEEEEec------ccchhhhccHHHHHHHHHHHhcCC
Confidence 3445799999854 345566667789999999997643
No 262
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=22.17 E-value=31 Score=35.48 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=26.9
Q ss_pred ceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 511 RVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 511 rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
++-+++||||+-| .+.|-.....++|+.+||.|....
T Consensus 325 ~~p~~~~l~va~G------~~g~G~~~~p~~g~~la~li~~~~ 361 (380)
T TIGR01377 325 LHPKYDNVVIGAG------FSGHGFKLAPVVGKILAELAMKLK 361 (380)
T ss_pred cCCCCCCEEEEec------CCccceeccHHHHHHHHHHHhcCC
Confidence 3446899999854 345666667789999999997653
No 263
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=31 Score=36.66 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCCeEEeccceEEEEEEeCC--CCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHH
Q psy10663 203 DKNTVQVSKNSEVTKLCFDET--KTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 263 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~--~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~ 263 (572)
.+.+.++.++..|..|..+.. ..++.|+.+. +..++..+ ++--..+...++|.-.
T Consensus 226 ~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~---~~~~e~~~---~~~~~~~~~v~~~~~~ 282 (485)
T COG3349 226 PERGRKVHADYPVKELDLDGARGLAKVTGGDVT---GPEQEQQA---ALAVVDAFAVQRFKRD 282 (485)
T ss_pred cccCceeeccceeeeeeccccccccceEeeeec---CcceEeee---hhhhhcccccchHhhc
Confidence 346889999999999998762 2468888776 44333332 2333334556665543
No 264
>PLN02507 glutathione reductase
Probab=21.94 E-value=1.7e+02 Score=31.63 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=38.5
Q ss_pred HhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 198 l~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
+....+..+++|++++.|++|.-++ +.+ .|+. .+|+ ++.++ .||+|.|..-...+|
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~--~~~-~v~~--~~g~--~i~~D-~vl~a~G~~pn~~~l 305 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTE--GGI-KVIT--DHGE--EFVAD-VVLFATGRAPNTKRL 305 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeC--CeE-EEEE--CCCc--EEEcC-EEEEeecCCCCCCCC
Confidence 3333456799999999999997653 222 2332 2454 57887 899999987777664
No 265
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=21.78 E-value=35 Score=35.36 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.7
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEe
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFD 221 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~ 221 (572)
.+....++.+|++|++++.+..+..+
T Consensus 199 ~~~~~ml~~~~i~v~l~~~~~~~~~~ 224 (377)
T TIGR00031 199 KLFEKMLDHPLIDVKLNCHINLLKDK 224 (377)
T ss_pred HHHHHHHhcCCCEEEeCCccceeecc
Confidence 45666677899999999977776643
No 266
>PLN02268 probable polyamine oxidase
Probab=21.68 E-value=37 Score=35.88 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|++|.++ |++|+||||..+.
T Consensus 14 ~aA~~L~~~-g~~v~vlEa~~r~ 35 (435)
T PLN02268 14 AAARALHDA-SFKVTLLESRDRI 35 (435)
T ss_pred HHHHHHHhC-CCeEEEEeCCCCC
No 267
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.55 E-value=1.7e+02 Score=30.78 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=38.1
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHHHHcC
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 265 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LLl~Sg 265 (572)
++....++.|++|++++.|.+|.- + .|.+. +|+ ++.++ .||+|+|.-.++ ++..+|
T Consensus 233 ~~~~~L~~~gV~v~~~~~v~~v~~----~---~v~~~--~g~--~i~~d-~vi~~~G~~~~~-~~~~~~ 288 (424)
T PTZ00318 233 YGQRRLRRLGVDIRTKTAVKEVLD----K---EVVLK--DGE--VIPTG-LVVWSTGVGPGP-LTKQLK 288 (424)
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeC----C---EEEEC--CCC--EEEcc-EEEEccCCCCcc-hhhhcC
Confidence 444445678999999999998852 2 24443 565 67786 899999965554 555554
No 268
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=21.32 E-value=2.1e+02 Score=29.39 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=31.4
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
.++..+.+.++++ +.+++|+.+..++ +.++ |.+. +|+ +++|+ .||.|.|+
T Consensus 116 ~L~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~-v~~~--~g~--~~~a~-~vI~AdG~ 165 (388)
T PRK07494 116 ALEARVAELPNIT-RFGDEAESVRPRE--DEVT-VTLA--DGT--TLSAR-LVVGADGR 165 (388)
T ss_pred HHHHHHhcCCCcE-EECCeeEEEEEcC--CeEE-EEEC--CCC--EEEEe-EEEEecCC
Confidence 3344444445666 7799999998763 3332 4432 453 67885 78888886
No 269
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=21.31 E-value=2.4e+02 Score=29.37 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=34.3
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.+..+.+.+|++|..+++|+.|..++ .. +.|.+. +|+ +++|+ -||.|-|+ +|
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~~~--~~-~~v~~~--~g~--~~~a~-lvIgADG~-~S 168 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAVGE--SE-AWLTLD--NGQ--ALTAK-LVVGADGA-NS 168 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEeeC--Ce-EEEEEC--CCC--EEEeC-EEEEeCCC-CC
Confidence 33344455789999999999998764 22 234443 564 67885 77777773 44
No 270
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=21.26 E-value=1.4e+02 Score=35.12 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCC-------------C-------------ceeEeeccceeEeccCcch
Q psy10663 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-------------G-------------KTIKVNANREVVLAANSIN 256 (572)
Q Consensus 203 ~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~-------------g-------------~~~~v~A~k~VILaAGai~ 256 (572)
...++++..++.-.+|+.|+ ++++++|++.... + .+.++.|+ .||+|+|.--
T Consensus 651 ~eEGV~f~~~~~P~~i~~d~-~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~vi~A~G~~~ 728 (1028)
T PRK06567 651 LALGVDFKENMQPLRINVDK-YGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTK-TVIMAIGIEN 728 (1028)
T ss_pred HHcCcEEEecCCcEEEEecC-CCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCC-EEEEecccCC
Confidence 46799999999999998875 5799999886211 1 45789996 9999999766
Q ss_pred hhHH
Q psy10663 257 SVRI 260 (572)
Q Consensus 257 Tp~L 260 (572)
...+
T Consensus 729 ~~~~ 732 (1028)
T PRK06567 729 NTQF 732 (1028)
T ss_pred cccc
Confidence 5555
No 271
>PLN02676 polyamine oxidase
Probab=21.09 E-value=1.4e+02 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=28.9
Q ss_pred eEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccC
Q psy10663 207 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 253 (572)
Q Consensus 207 l~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAG 253 (572)
.+|++++.|++|..+++ +|.+...+|+ +++|+ .||+|..
T Consensus 245 ~~I~l~~~V~~I~~~~~-----gV~V~~~~G~--~~~a~-~VIvtvP 283 (487)
T PLN02676 245 PRLKLNKVVREISYSKN-----GVTVKTEDGS--VYRAK-YVIVSVS 283 (487)
T ss_pred CceecCCEeeEEEEcCC-----cEEEEECCCC--EEEeC-EEEEccC
Confidence 57999999999988742 3555434664 67886 7999874
No 272
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.07 E-value=1.7e+02 Score=31.73 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=35.1
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
.++....++.+++++.+++|++|..++ + ...|.. .+|. ++.++ .||+|.|+
T Consensus 270 ~~l~~~~~~~gv~i~~~~~V~~I~~~~--~-~~~V~~--~~g~--~i~a~-~vViAtG~ 320 (517)
T PRK15317 270 AALEEHVKEYDVDIMNLQRASKLEPAA--G-LIEVEL--ANGA--VLKAK-TVILATGA 320 (517)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEecC--C-eEEEEE--CCCC--EEEcC-EEEECCCC
Confidence 344444556689999999999998763 2 223333 3454 57786 89999998
No 273
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=20.93 E-value=1.1e+02 Score=33.11 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=25.0
Q ss_pred eccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCC
Q psy10663 513 NGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSP 552 (572)
Q Consensus 513 ~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~ 552 (572)
-.++|||.|++|++|- +++ |. +++=+..+|+.|.++
T Consensus 456 t~i~gLyl~G~~~~pG-~Gv-~g--~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPG-QGL-NA--VAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCeEEecCcCCCC-CCH-HH--HHHHHHHHHHHHHhh
Confidence 4689999999999984 233 22 334466777777765
No 274
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=20.88 E-value=1.6e+02 Score=30.11 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=39.7
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
+|+.++.+.=.=+|.+++-|.+|..-.+ ||++.+.+|+++++. +||+|+-+-+-
T Consensus 221 ~yvq~laa~~~~~i~t~~~V~~l~rlPd-----Gv~l~~~~G~s~rFD---~vViAth~dqA 274 (447)
T COG2907 221 AYVQRLAADIRGRIETRTPVCRLRRLPD-----GVVLVNADGESRRFD---AVVIATHPDQA 274 (447)
T ss_pred HHHHHHhccccceeecCCceeeeeeCCC-----ceEEecCCCCccccc---eeeeecChHHH
Confidence 6887765433446999999999987654 677887789988774 57888776553
No 275
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.79 E-value=37 Score=33.25 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.1
Q ss_pred CccccccCCCCCeEEEEcccCCC
Q psy10663 1 CLTAKLLAQSGCSVLILEAGPDA 23 (572)
Q Consensus 1 v~A~rLae~~g~~VLvLEaG~~~ 23 (572)
++|..|++. |.+|+|||++...
T Consensus 14 ~~A~~l~~~-g~~v~vie~~~~~ 35 (295)
T TIGR02032 14 SAAYRLADK-GLRVLLLEKKSFP 35 (295)
T ss_pred HHHHHHHHC-CCeEEEEeccCCC
Confidence 368889865 9999999999754
No 276
>KOG2495|consensus
Probab=20.76 E-value=85 Score=32.79 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=34.3
Q ss_pred CccccccccccCCCCCCC----ccCCCCceeccCCceEe-cccCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy10663 487 TNHPTGTLRMGPPSDPLA----VVGPDFRVNGFSNLRVV-GEPVIPVEMVTDSSAVALMLAERCATFIQ 550 (572)
Q Consensus 487 ~~H~~Gt~rMG~~~d~~~----VVD~~~rV~g~~nL~V~-D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~ 550 (572)
..-|.++--|-.-+ +++ .||+++||.|++|+|-+ |++.+|... | ..-+|++-+..+.
T Consensus 328 ~~rp~~k~lm~~i~-e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLA 389 (491)
T KOG2495|consen 328 GPRPVIKDLMKQID-EQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLA 389 (491)
T ss_pred CCchhhhhHhhcCC-ccCceeeeeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHH
Confidence 34555555555432 223 89999999999999965 555354433 3 3345555444443
No 277
>PRK08013 oxidoreductase; Provisional
Probab=20.55 E-value=2.1e+02 Score=29.76 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=32.7
Q ss_pred hHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchh
Q psy10663 197 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257 (572)
Q Consensus 197 yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~T 257 (572)
.+..+.+.+|++|+.+++|+.|+.+++ . +.|.+. +|+ +++|+ -||-|=| .+|
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~--~-v~v~~~--~g~--~i~a~-lvVgADG-~~S 168 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGEN--E-AFLTLK--DGS--MLTAR-LVVGADG-ANS 168 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCC--e-EEEEEc--CCC--EEEee-EEEEeCC-CCc
Confidence 333344456899999999999987642 2 234443 554 68885 5555555 454
No 278
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=20.55 E-value=1.7e+02 Score=31.05 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=33.4
Q ss_pred eEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 207 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 207 l~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
.+|++++.|++|..++ +.+ .|+. .+|+ ++.++ .||+|.-+-....||
T Consensus 238 ~~i~~~~~V~~I~~~~--~~~-~v~~--~~g~--~~~ad-~VI~t~P~~~~~~ll 284 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRG--SNY-TLEL--DNGV--TVETD-SVVVTAPHKAAAGLL 284 (462)
T ss_pred CeEEcCCeEEEEEecC--CcE-EEEE--CCCc--EEEcC-EEEECCCHHHHHHHh
Confidence 6799999999998864 222 2333 3553 57886 899998877666665
No 279
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=20.44 E-value=36 Score=35.62 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=35.8
Q ss_pred ccccccccccCCCCCCCccCCCCceeccCCceEecccCCCCCCCcchHHHHHHHHHHHHHHhhCCC
Q psy10663 488 NHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATFIQSPV 553 (572)
Q Consensus 488 ~H~~Gt~rMG~~~d~~~VVD~~~rV~g~~nL~V~D~Sv~P~~~~~NP~lTi~AlA~r~ad~I~~~~ 553 (572)
.+++|.-.|-+|.. =+++.. ..+||||+-| -+.|-....-++|+.+|+.|....
T Consensus 350 ~~w~G~r~~t~D~~--PiIG~~----~~~gl~~a~G------~~g~G~~~ap~~g~~la~li~g~~ 403 (416)
T PRK00711 350 TFWTGLRPMTPDGT--PIVGAT----RYKNLWLNTG------HGTLGWTMACGSGQLLADLISGRK 403 (416)
T ss_pred ceeeccCCCCCCCC--CEeCCc----CCCCEEEecC------CchhhhhhhhhHHHHHHHHHcCCC
Confidence 34566555554332 355543 2589998643 456778888899999999997654
No 280
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=20.31 E-value=1.9e+02 Score=30.46 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=30.3
Q ss_pred EEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHH
Q psy10663 208 QVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 260 (572)
Q Consensus 208 ~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~L 260 (572)
+|++++.|++|..++ +. +.|.+ .+|+ ++.++ .||+|+-.-...+|
T Consensus 235 ~i~~~~~V~~i~~~~--~~-~~v~~--~~g~--~~~~d-~vI~a~p~~~~~~l 279 (451)
T PRK11883 235 TIHKGTPVTKIDKSG--DG-YEIVL--SNGG--EIEAD-AVIVAVPHPVLPSL 279 (451)
T ss_pred eEEeCCEEEEEEEcC--Ce-EEEEE--CCCC--EEEcC-EEEECCCHHHHHHh
Confidence 899999999998773 32 23433 3565 47786 89998775443333
No 281
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.24 E-value=2.6e+02 Score=28.71 Aligned_cols=50 Identities=12% Similarity=0.289 Sum_probs=32.7
Q ss_pred HhHhhhcCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCc
Q psy10663 196 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 254 (572)
Q Consensus 196 ~yl~~~~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGa 254 (572)
..+..+.+.++++++++++|++|+.++ +.+ .|.+. ++ +++|+ -||-|=|+
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v-~v~~~--~~---~~~ad-lvIgADG~ 158 (374)
T PRK06617 109 ILLSKITNNPLITLIDNNQYQEVISHN--DYS-IIKFD--DK---QIKCN-LLIICDGA 158 (374)
T ss_pred HHHHHHhcCCCcEEECCCeEEEEEEcC--CeE-EEEEc--CC---EEeeC-EEEEeCCC
Confidence 334444555689999999999998764 222 24442 33 78895 67777775
No 282
>PLN02697 lycopene epsilon cyclase
Probab=20.16 E-value=2.2e+02 Score=31.14 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=32.7
Q ss_pred cCCCCeEEeccceEEEEEEeCCCCEEEEEEEEcCCCceeEeeccceeEeccCcchhhHHH
Q psy10663 202 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 261 (572)
Q Consensus 202 ~~~~nl~i~~~~~V~~i~~~~~~~~a~gV~~~~~~g~~~~v~A~k~VILaAGai~Tp~LL 261 (572)
....++++ .+++|++|..++ +.+..|.. .+|. ++.|+ .||.|.|+ .|.+++
T Consensus 202 a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~--~dG~--~i~A~-lVI~AdG~-~S~rl~ 252 (529)
T PLN02697 202 CVESGVSY-LSSKVDRITEAS--DGLRLVAC--EDGR--VIPCR-LATVASGA-ASGRLL 252 (529)
T ss_pred HHhcCCEE-EeeEEEEEEEcC--CcEEEEEE--cCCc--EEECC-EEEECCCc-Chhhhh
Confidence 34568887 778999988763 33332322 2453 57895 89999997 455543
Done!