RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10663
(572 letters)
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 219 bits (559), Expect = 3e-64
Identities = 153/560 (27%), Positives = 238/560 (42%), Gaps = 57/560 (10%)
Query: 1 CLTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
+ A L+ +G SVL+LEAG D +PA + + + DWGF E P L+
Sbjct: 20 SVLAARLSDAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLR 75
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTKL 118
+ + +VLGGSS IN M++ RG D++ W + GW Y D+ + R E
Sbjct: 76 GRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLG 135
Query: 119 DTV-RTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
T G + ++ ++ N + F +A E +GF + +D G
Sbjct: 136 VGGQDLRTWHGG-----GGPLPVSPPRSP--NPIARAFIEAGEQLGFPTTPDPNGADQEG 188
Query: 178 IAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG 237
P + +G+R A+ +L+ + + + + V ++ + + GVE G
Sbjct: 189 FGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDG 246
Query: 238 KTIKV-NANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP-- 294
TI+ A REVVLAA +INS ++L SG+G A L ++ I +V LPGVG+ L H
Sbjct: 247 GTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI 306
Query: 295 -MFFGLSYTFTKTPVSSYTINEI-IYEYLTQRTG-RFTDIGMSNFIGYLDTDFKGNPDVA 351
+ F + + +S ++ I YL R G T+ F+ + PD
Sbjct: 307 YVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFV-RSGPAGEY-PDG- 363
Query: 352 VTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
QY+F A + L +G + PK+ G V + S
Sbjct: 364 --QYHF-------------APLP----LAIRAAGAEHGFTLHVGP--MRPKSRGSVTLRS 402
Query: 412 NDPTKNPTIRYPLYT-EEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470
DP P I P Y E D +++ ++ + E+ +
Sbjct: 403 PDPDNRPVID-PNYLSAEGDRAIFRAGIRLTREIIGQPALDAR----RKAELA--PGPRV 455
Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVV-GPDFRVNGFSNLRVVGEPVIPVE 529
++E AI++L+ T HP GT RMG SDP AVV P RV+G NLRVV V+P
Sbjct: 456 TTDEDISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTS 513
Query: 530 MVTDSSAVALMLAERCATFI 549
+ + + LAER A I
Sbjct: 514 TGVNPNLTIIALAERAADHI 533
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 213 bits (545), Expect = 2e-62
Identities = 154/554 (27%), Positives = 247/554 (44%), Gaps = 69/554 (12%)
Query: 13 SVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQAR 69
SVL+LEAG D P +PA + + +W + E P + + V + +
Sbjct: 25 SVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGHARGK 80
Query: 70 VLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESE 128
VLGGSS IN MI+ RG+ DYE+W + M W Y+D Y R+E T E
Sbjct: 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFG--------GE 132
Query: 129 TVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDG 188
+DG + + + N L F +A + G+ G P + +G
Sbjct: 133 KPYRGHDGPIKVRRGPAD--NPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNG 190
Query: 189 QRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREV 248
+R+ A+ +L + ++V + VTK+ F+ + TGVEF+ K AN+EV
Sbjct: 191 RRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKKGGRKE-HTEANKEV 247
Query: 249 VLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 308
+L+A +INS ++LQ SG+GDA L + I +LPGVG+ L H + + + + PV
Sbjct: 248 ILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDH-LEVYVQHACKQ-PV 305
Query: 309 SSYT------INEIIYEYLTQRTGRFTDIGMSNFI---GYLDTDFKGNPDVAV--TQYYF 357
S Y I ++L R G G SN G++ + N DV QY+F
Sbjct: 306 SLYPSLNWLKQPFIGAQWLFGRKG----AGASNHFEGGGFV----RSNDDVDYPNIQYHF 357
Query: 358 -PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPI-LIIGLVSLCPKAEGVVEINSNDPT 415
P + R+ A K + + + + G V+I S DP
Sbjct: 358 LP-------------------VAIRYDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPF 398
Query: 416 KNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEY 475
+ P I + + EED + A+++ ++K + ++ EI + Q++E
Sbjct: 399 EKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGG----EISPGPEV--QTDEE 452
Query: 476 YRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
++ T HP GT +MGP SD ++VV P+ RV+G LRVV ++P + +
Sbjct: 453 IDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLN 512
Query: 536 AVALMLAERCATFI 549
A +M+ E+ A I
Sbjct: 513 APVIMMGEKAADII 526
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 208 bits (532), Expect = 5e-60
Identities = 153/571 (26%), Positives = 246/571 (43%), Gaps = 82/571 (14%)
Query: 2 LTAKLLAQSGCSVLILEAG-PDAPIS--TAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
L +L SVL+LEAG PD +PA +Q + +W + E+ P +
Sbjct: 20 LANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAY--ETEPEPHMNN 77
Query: 59 KDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIER 115
+ R+ R VLGGSS IN M++ RG+ DY+ W L + GW+Y+D + + E
Sbjct: 78 R----RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAET 133
Query: 116 TKL--DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
D R DG +++T K N L F +A G+ D
Sbjct: 134 RDGGEDDYR----------GGDGPLSVTRGK-PGTNPLFQAFVEAGVQAGYPRTDDLNGY 182
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
G P + +G+R A+ +L + + + ++ ++ F+ + GVE+
Sbjct: 183 QQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYE 240
Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G A REV+L+A +INS ++LQ SG+G A L + IP+V +LPGVG+ L H
Sbjct: 241 R-GGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDH 299
Query: 294 PMFFGLSYTFTKTPVSSYTINE------IIYEYLTQRTGRFTDIGMSN------FIGYLD 341
+ + Y + PVS Y + I E+L TG +G SN FI
Sbjct: 300 -LEVYIQYECKQ-PVSLYPALKWWNKPKIGAEWLFTGTG----LGASNHFEAGGFI---- 349
Query: 342 TDFKGNPDVAV--TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVS 398
+ V QY+F P +R V +G
Sbjct: 350 ---RSRAGVDWPNIQYHFLPVA----IRYDGSN------------AVKGHGFQAHVG--P 388
Query: 399 LCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSV 458
+ + G V++ S DP +P+I + + E+D + A+++ +M ++
Sbjct: 389 MRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGR-- 446
Query: 459 QLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNL 518
EI A Q++E ++ + T HP+ T +MG DP+AVV P+ RV+G L
Sbjct: 447 --EISPGADV--QTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGL 500
Query: 519 RVVGEPVIPVEMVTDSSAVALMLAERCATFI 549
RVV ++P + +A +M+AE+ A I
Sbjct: 501 RVVDASIMPTITNGNLNAPTIMIAEKAADLI 531
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 131 bits (332), Expect = 5e-33
Identities = 127/557 (22%), Positives = 200/557 (35%), Gaps = 92/557 (16%)
Query: 2 LTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDS-KLDWGFVLESNPSYGLGLKD 60
+ A+L C+V +LEAGP P+ + D +L G YG+ L D
Sbjct: 15 VAARLSEDPSCTVTVLEAGP-GYRD---PSRLPAQLTDGLRLPIGPASPVVWRYGVELTD 70
Query: 61 NVVRLNQ---ARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIER-T 116
R + RVLGGS +N R D++ W + GW++ D+ + IE
Sbjct: 71 GPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSWDDVLPHFRAIETDL 127
Query: 117 KLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSD-- 174
D T I +T +++ + + F A GF S
Sbjct: 128 DFDGPLHGTAG-----------PIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGPD 176
Query: 175 -HVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
G+ + G+R+ + +L + + V ++ V ++ F + T+ GVE
Sbjct: 177 APTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILF--SGTRAVGVEVL 234
Query: 234 NPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 293
G + A+R VVL A ++ S +L SG+G A L I +V +LP VG H
Sbjct: 235 GDGGPRT-LRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP-VGSDFVDH 291
Query: 294 PMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVT 353
P + L Y + T T + E + L+T D+ +
Sbjct: 292 PE-WVLPYRWRPTHDRPDTSPVL--ETV------------------LNTA-----DIEIR 325
Query: 354 QYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSND 413
Y F LV D P L + L+ P + G + + S D
Sbjct: 326 PYTAG-----F-----------TALVP---GSPRDDPHLGVALMR--PHSRGRIRLASAD 364
Query: 414 PTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSE 473
P P I + + D + + ++ + +
Sbjct: 365 PADPPRIEHRYDSSAADRAALRAGAALAHELLG--------------SPELGPLLEPAVR 410
Query: 474 EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTD 533
E + T+ H G+ RMG DP AVV RV G L VV ++PV
Sbjct: 411 EGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRG 470
Query: 534 SSAVALMLAERCATFIQ 550
A A+M+AER A F+
Sbjct: 471 PHATAVMVAERAAEFLG 487
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 100 bits (251), Expect = 5e-25
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 401 PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQL 460
P++ G V ++S+DP P I ++ D+ + A+++ R++
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILA-AALVELTP----G 55
Query: 461 EIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRV 520
++ S++ I+ + T+ HP GT RMG D VV PD RV+G NLRV
Sbjct: 56 PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDD-GVVDPDLRVHGVDNLRV 114
Query: 521 VGEPVIPVEMVTDSSAVALMLAERC 545
V V P + + LAER
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 81.9 bits (203), Expect = 1e-17
Identities = 55/238 (23%), Positives = 87/238 (36%), Gaps = 49/238 (20%)
Query: 65 LNQARVLGGSSIINDMIHDRGSQYDYERWE---GLNMTGWTYSDMDAIYTRIERTKLDTV 121
L +GG S +N R + W GL GW Y D ++E
Sbjct: 21 LPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLE--GWGYDDYLPYMDKVE------- 71
Query: 122 RTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKS---PDTFTVSDHVGI 178
G + +TT E + L KA E++G+ P + G
Sbjct: 72 --------------GPLGVTTKGIE-ESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGF 116
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK 238
G + + +LR ++N +++ ++ K+ + GVE R G
Sbjct: 117 C--GLGCPTGAKQSTARTWLRPALERN-LRILTGAKAEKIIILGRGGRAVGVEAR-DGGG 172
Query: 239 TIKVN--ANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
IK A +EVV+AA ++N+ +L +SG+G VGK L LHP
Sbjct: 173 GIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH-------------PVGKNLQLHP 217
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 61.4 bits (149), Expect = 7e-10
Identities = 90/396 (22%), Positives = 160/396 (40%), Gaps = 87/396 (21%)
Query: 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFD--ETKTKVTGVEFRNPQGKT----IK 241
G+R A+ L A + N ++V ++ V K+ FD + + TGV F++ G +
Sbjct: 218 GRRHTAAE--LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLS 275
Query: 242 VNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSY 301
N E++L+A +I S ++L SG+G L K+ IP+V + VGK ++ +PM +
Sbjct: 276 NNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPM--NSIF 333
Query: 302 TFTKTPVSSYTINEI-IYE---YLTQRTGRF--------TDIG-MSNFIGYLDTDFKGNP 348
+K PV I + I + Y+ +G F G MS IG L T
Sbjct: 334 VPSKAPVEQSLIQTVGITKMGVYIEASSG-FGQSPDSIHCHHGIMSAEIGQLST------ 386
Query: 349 DVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKP--------IL--IIGLVS 398
P Q T + ++ ++ + P IL I G
Sbjct: 387 -------IPPKQRTP-------------EAIQAYIHRKKNLPHEAFNGGFILEKIAG--- 423
Query: 399 LCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTN-- 456
P + G + + + + NP++ + + +D++ + ++ +++++K F NF T
Sbjct: 424 --PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNF-TQCD 480
Query: 457 ----------SVQLEIKECAKCKYQSEEYYR-CAIKYLSTTTNHPTGTLRMGPPSDPLAV 505
SV+ I K ++ + C K T H G +G V
Sbjct: 481 KQTMEKVLNMSVKANINLIPKHTNDTKSLEQFC--KDTVITIWHYHGGCHVG------KV 532
Query: 506 VGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALML 541
V +++V G S LRV+ T+ A +M+
Sbjct: 533 VDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMM 568
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 35.5 bits (82), Expect = 0.077
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 34/153 (22%)
Query: 1 CLTAKLLAQSGCSVLILEAGPD--APISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
A LA++G V +LE P I A+ +++ LE LGL
Sbjct: 15 LALALALARAGLDVTLLERAPRELLERGRGI-ALSPNALR--------ALER-----LGL 60
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRG-------SQYDYERWEGLNMTGWTYSDM-DAIY 110
D + L G ++ M+ D G + R + SD+ +A+
Sbjct: 61 WDRLEAL-------GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPR--SDLLNALL 111
Query: 111 TRIERTKLDTVRTETESETVTVDNDG-TVTITT 142
T+R E E V D DG TVT++
Sbjct: 112 EAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF 144
>gnl|CDD|116236 pfam07619, DUF1581, Protein of unknown function (DUF1581). Several
Rhodopirellula baltica proteins share this probable
domain. Most of these proteins are predicted to be
secreted or membrane-associated.
Length = 84
Score = 31.6 bits (72), Expect = 0.16
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 489 HPTGTLRMGPPSDPLAVVGPDFRVNG-FSNLRVVGEPVIP--VEMVTD 533
P + + P + +G F NLR+ G+P IP V +V
Sbjct: 16 RPIHRESVADSAAPWVALRSWRTSHGGFRNLRITGDPEIPDQVSLVES 63
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 34.1 bits (78), Expect = 0.25
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 489 HPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATF 548
H GT R+G + V D +V+ F NL V G IP + + ++ A + A +
Sbjct: 480 HLAGTTRIGF-DEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEY 538
Query: 549 IQS 551
I +
Sbjct: 539 IIN 541
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 33.3 bits (77), Expect = 0.39
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 207 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 252
VQ+ ++ T+L D+ +V GVE R G+T+ + A + VVLAA
Sbjct: 192 VQIRYDTRATRLIVDDDG-RVVGVEARRY-GETVAIRARKGVVLAA 235
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 29.0 bits (66), Expect = 0.86
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1 CLTAKLLAQSGCSVLILEAGPD 22
+ A LLA+ G VL+LE
Sbjct: 9 LVAAYLLAKRGKDVLVLEKRDR 30
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 31.3 bits (71), Expect = 1.6
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 244 ANREVVLAANSIN---SVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGL 299
A + V+LA IN + L A +Y IP+V L G G + HP+F G+
Sbjct: 210 AKKPVILAGGGINYAEAATELN-------AFAERYQIPVVTTLLGQGTIATSHPLFLGM 261
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 31.2 bits (71), Expect = 1.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 203 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLA 251
K + NS+V L D+ T V GV + +GK I + A + VVLA
Sbjct: 141 KKEGIDTRLNSKVEDLIQDDQGT-VVGVVVKG-KGKGIYIKAAKAVVLA 187
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 30.9 bits (70), Expect = 2.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 274 KYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYE--YLTQRTGRFTD 330
+ IP+V L G+G + HP+F G++ +YT N +YE L RF D
Sbjct: 241 QQEIPVVHTLLGLGGFPADHPLFLGMAGMH-----GTYTANMALYECDLLINIGARFDD 294
>gnl|CDD|220266 pfam09492, Pec_lyase, Pectic acid lyase. Members of this family
are isozymes of pectate lyase (EC:4.2.2.2), also called
polygalacturonic transeliminase and
alpha-1,4-D-endopolygalacturonic acid lyase.
Length = 285
Score = 30.3 bits (69), Expect = 2.8
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 100 GWTYS-DMDAIYTRIERTKLDTVRTETESETVTVDNDGTVT 139
GW + DM A + ER L + + T+DN T T
Sbjct: 6 GWPKNIDMAAPLSLAERADLIKEKQHGDG---TIDNGATTT 43
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 30.1 bits (68), Expect = 3.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 76 IINDMIHDRGSQYDYERWEGLNMTGW 101
I N +H DY +EG+ +TGW
Sbjct: 410 ITNADLHH---AADYTPYEGMRVTGW 432
>gnl|CDD|153382 cd07370, HPCD, The Class III extradiol dioxygenase,
homoprotocatechuate 2,3-dioxygenase, catalyzes the key
ring cleavage step in the metabolism of
homoprotocatechuate. 3,4-dihydroxyphenylacetate
(homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes
the key ring cleavage step in the metabolism of
homoprotocatechuate (hpca), a central intermediate in
the bacterial degradation of aromatic compounds. The
enzyme incorporates both atoms of molecular oxygen into
hpca, resulting in aromatic ring-opening to yield
alpha-hydroxy-delta-carboxymethyl cis-muconic
semialdehyde. HPCD is a member of the class III
extradiol dioxygenase family, a group of enzymes which
use a non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 280
Score = 29.6 bits (67), Expect = 3.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 323 QRTGRFTDIGMSNFIGYLDTDFKGNPDVA 351
+ +G FT + +FI + D+ G+P++A
Sbjct: 69 RFSGLFTSNELPHFIADMPYDYAGDPELA 97
>gnl|CDD|111779 pfam02929, Bgal_small_N, Beta galactosidase small chain. This
domain comprises the small chain of dimeric
beta-galactosidases EC:3.2.1.23. This domain is also
found in single chain beta-galactosidase.
Length = 274
Score = 29.6 bits (67), Expect = 4.4
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 83 DRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTK--------LDTVRTETESETV---- 130
D G EGL + W + + + TR+E +VR+ E V
Sbjct: 45 DIG------NGEGLRIARWKAAGLYRLVTRVEDIAAVQSEGEVAVSVRSAYELPGVTDFT 98
Query: 131 -----TVDNDGTVTITT 142
T+ DG + +
Sbjct: 99 VTVTYTIFGDGQINVAV 115
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 4 AKLLAQSGCSVLILEAGP 21
A+ LA++G VL+LE G
Sbjct: 19 ARRLAKAGLDVLVLEKGS 36
>gnl|CDD|238803 cd01569, PBEF_like, pre-B-cell colony-enhancing factor (PBEF)-like.
The mammalian members of this group of nicotinate
phosphoribosyltransferases (NAPRTases) were originally
identified as genes whose expression is upregulated upon
activation in lymphoid cells. In general, nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
Length = 407
Score = 29.6 bits (67), Expect = 5.6
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 315 EIIYEYLTQRTGRFTDI----GMSNF-----IGYLDTDFKGNPDVAVTQYYFPAQDTLFL 365
+Y YL R G++ D G+ F I ++ DF + AV + +F D F
Sbjct: 20 TAVYSYLEPRGGKYYDQTVFFGLQYFLKKYLIDPVNRDFFIDEAEAVFEAHFGMNDLPFN 79
Query: 366 RGHLKAW 372
+
Sbjct: 80 EDGWRHI 86
>gnl|CDD|200301 TIGR03621, F420_MSMEG_2516, probable F420-dependent oxidoreductase,
MSMEG_2516 family. Coenzyme F420 is produced by
methanogenic archaea, a number of the Actinomycetes
(including Mycobacterium tuberculosis), and rare members
of other lineages. The resulting information-rich
phylogenetic profile identifies candidate F420-dependent
oxidoreductases within the family of luciferase-like
enzymes (pfam00296), where the species range for the
subfamily encompasses many F420-positive genomes without
straying beyond. This family is uncharacterized, and
named for member MSMEG_2516 from Mycobacterium smegmatis
[Unknown function, Enzymes of unknown specificity].
Length = 295
Score = 28.9 bits (65), Expect = 6.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 155 FSKAFEDIGFKSPDTFTVSDHVGIAPP 181
++ ED GF D TV DH+G P
Sbjct: 19 LARRAEDAGF---DVLTVPDHLGAPAP 42
>gnl|CDD|225759 COG3218, COG3218, ABC-type uncharacterized transport system,
auxiliary component [General function prediction only].
Length = 205
Score = 28.5 bits (64), Expect = 6.7
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 168 DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKL 218
DT+++S H + K Q +IA L+A+ V E+
Sbjct: 34 DTYSLSVHPPVDSNGPKRKTWQLLIARPTALKALDSPRIVVRPSRGEIQYY 84
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 29.0 bits (65), Expect = 8.3
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 184 YLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVN 243
YL DG L+ ++++ + + N++VTK+ E KVTGV+ + +T ++
Sbjct: 191 YLVDG--------LLKNVQERK-IPLFVNADVTKI--TEKDGKVTGVKVKINGKETKTIS 239
Query: 244 ANREVV 249
+ VV
Sbjct: 240 SKAVVV 245
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 500
Score = 28.8 bits (65), Expect = 9.8
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 23/110 (20%)
Query: 102 TYSDMDAIYTRI-ERTKLDTVRTE-----------TESETVTVDNDGTVTITTIKTEKIN 149
TY M Y+RI R L E E + D G I T
Sbjct: 173 TYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSHEFEALMPDG-GEDQIATSHH---- 227
Query: 150 LLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLR 199
+ F KAF DI F+ + + + Y + R+I ++I +
Sbjct: 228 -YGANFEKAFIDIKFEDEEE---GELEYVHTTSYGIST--RIIGAAILIH 271
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,548,645
Number of extensions: 2785166
Number of successful extensions: 2679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2654
Number of HSP's successfully gapped: 41
Length of query: 572
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 470
Effective length of database: 6,413,494
Effective search space: 3014342180
Effective search space used: 3014342180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.4 bits)