RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10663
(572 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 287 bits (738), Expect = 3e-90
Identities = 125/576 (21%), Positives = 218/576 (37%), Gaps = 58/576 (10%)
Query: 2 LTAKLLAQSGCSVLILEAGP--DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
+ A+L SVL+LEAG + + P + + +S DW + + G
Sbjct: 17 VAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA----GYN 72
Query: 60 DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTKL 118
+ + R+LGGSS ++ M+ RGS D++R+ + GW + ++ + E
Sbjct: 73 GRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVP 132
Query: 119 --DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDT--FTVSD 174
D T E +G+V+I+ L ++ +
Sbjct: 133 PADNHNTSGEFIPAVHGTNGSVSISLPGFP--TPLDDRVLATTQEQSEEFFFNPDMGTGH 190
Query: 175 HVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKV-----TG 229
+GI+ + + +GQR +S+ +LR + + + V N++VTKL T +
Sbjct: 191 PLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVE 250
Query: 230 VEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKR 289
+ T V A +EVVL+A S+ + +LQ SG+GD LS I + N P VG+
Sbjct: 251 YAEQE-GAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRN 309
Query: 290 LSLHPMFFGL-----SYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDF 344
LS H + + TF S N + ++ RTG T ++N + +L
Sbjct: 310 LSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLT-ALIANHLAWLRL-- 366
Query: 345 KGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAE 404
P + FP H + + + + + + P A
Sbjct: 367 ---PSNSSIFQTFPDPAAGPNSAHWETIFS-NQWFHPAIPRPDTGSFMSVTNALISPVAR 422
Query: 405 GVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKE 464
G +++ +++P P I + E DI ++ AVK R + + + +F
Sbjct: 423 GDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIR----PFDP 478
Query: 465 CAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEP 524
+ + I+ + T HP GT M P VV PD +V G LR+V
Sbjct: 479 RLRDP-TDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIV--- 534
Query: 525 VIPVEMVTDSS-----------AVALMLAERCATFI 549
D S ++ ++ A I
Sbjct: 535 --------DGSILPFAPNAHTQGPIYLVGKQGADLI 562
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 272 bits (699), Expect = 2e-84
Identities = 115/586 (19%), Positives = 196/586 (33%), Gaps = 75/586 (12%)
Query: 2 LTAKLLAQSGCSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
+ +L +VLI+EAG + P+ +++SK DW +
Sbjct: 21 VAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAM-DLRNSKYDWAYKTTMVR----RD 75
Query: 59 KDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERT 116
+ R LGGSS +N G + +++WE WT+ + +
Sbjct: 76 DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATY 135
Query: 117 KLDTVRTETESETVTVDNDGTVTITTIKTE-KINLLRSTFSKAFEDIGFKSPDTFTVSDH 175
D E E + G + I+ + ++ R +KA++ +G + +
Sbjct: 136 HDDPRLYSPELEKIGG--GGPIPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEM 193
Query: 176 VGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 235
G+ + GQR S FL N + + +L +E GV
Sbjct: 194 DGLTHCCDTIYRGQR---SGSFLFVKNKPN-ITIVPEVHSKRLIINEADRTCKGVTVVTA 249
Query: 236 QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPM 295
G + A+REV+L+ + ++L SG+G LS++ I + + VG+ L HP
Sbjct: 250 AGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPG 309
Query: 296 FFGLSYTFTKTPVSSYTIN--------EIIYEYLTQRTGRFTDIGMSNF---IGYLDTDF 344
K + ++ Y R+G S +G+ D
Sbjct: 310 -VPFVLR-VKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVG----SGLLELVGFPRIDK 363
Query: 345 KGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERF-VKVNADKPILIIG---LVSLC 400
D + + D V F P G V +
Sbjct: 364 YLEKDAEYRKAKAANGGKDPFSPLG-QPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVD 422
Query: 401 ---PKA-EGVVEINSNDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVM-KYRDFKNFQ 454
P + G V +NS DP + P I + + DI + ++ ++ K FK+
Sbjct: 423 LVRPISDPGEVTLNSADPFQQPNI-NLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLV 481
Query: 455 TNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNG 514
+ E S++ A+ T HPTGT R+ + VV P +V+G
Sbjct: 482 ES----EYPWEM--PLDSDKEMHRAVLDRCQTAFHPTGTARLS-KNIDQGVVDPKLKVHG 534
Query: 515 FSNLRVVGEPVIPVEMVTDSS-----------AVALMLAERCATFI 549
LRV D+S + E+CA I
Sbjct: 535 IKKLRVA-----------DASVIPIIPDCRIQNSVYAVGEKCADMI 569
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 273 bits (700), Expect = 2e-84
Identities = 100/568 (17%), Positives = 180/568 (31%), Gaps = 69/568 (12%)
Query: 13 SVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQAR 69
VL++E G + P + I + +D + + P + + + +
Sbjct: 50 KVLVIEKGFYESNDGAIIEDPNAYG-QIFGTTVDQNY--LTVP----LINNRTNNIKAGK 102
Query: 70 VLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTKLDTVRTETESE 128
LGGS++IN R + + WE + M GW + +M + E + T
Sbjct: 103 GLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGH 162
Query: 129 TVTVD---NDGTVTITTIKTEKI-NLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAP-PMY 183
+ +GTV + + + +G F G++
Sbjct: 163 SFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNN 222
Query: 184 YLKDGQRMIASSIFLRAIKD-KNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQGKTI 240
++ R+ A+ +L N +++ V K+ F +T + GV F +
Sbjct: 223 LDENQVRVDAARAWLLPNYQRSN-LEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNF 281
Query: 241 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 300
V A EV+LAA S S IL+ SG+G ++L + N+ + +LP VG + +S
Sbjct: 282 DVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTT-TTVS 339
Query: 301 Y------TFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQ 354
V E +Y Q + + G +V +
Sbjct: 340 SRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNT-KLDQWAEETVAR-GGFHNVTALK 397
Query: 355 YYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDP 414
+ L + + E F+ + + L L P G V I S+DP
Sbjct: 398 VQYENYRNWLL-------DEDVAFAELFM---DTEGKINFDLWDLIPFTRGSVHILSSDP 447
Query: 415 TKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIK-ECAKCKYQS 472
P + E D+ A K+ + K + E + +
Sbjct: 448 YLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAG----ETLPGYNLVQNAT 503
Query: 473 EEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVT 532
+ + H + M + VV +V G LRV+
Sbjct: 504 LSQWSDYVLQNFRPNWHAVSSCSMM-SRELGGVVDATAKVYGTQGLRVI----------- 551
Query: 533 DSS-----------AVALMLAERCATFI 549
D S + +A + A I
Sbjct: 552 DGSIPPTQVSSHVMTIFYGMALKVADAI 579
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 265 bits (679), Expect = 2e-81
Identities = 118/572 (20%), Positives = 194/572 (33%), Gaps = 54/572 (9%)
Query: 2 LTAKLLAQSGCSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
A+L SVL++E+G D + I S +D + E+ L
Sbjct: 34 TAARLTENPNISVLVIESGSYESDRGPIIEDLNAYG-DIFGSSVDHAY--ETVE---LAT 87
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLN-MTGWTYSDMDAIYTRIERTK 117
+ + LGGS+++N R + + WE + GW + ++ A + ER +
Sbjct: 88 NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 147
Query: 118 LDTVRTETESETVTVD---NDGTVTITTIKT-EKINLLRSTFSKAFEDIGFKSPDTFTVS 173
+ +GTV T + + + A ED G + F
Sbjct: 148 APNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCG 207
Query: 174 DHVGIAP-PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGV 230
D G++ P +D R A+ +L + +QV V K+ + T + GV
Sbjct: 208 DPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGV 267
Query: 231 EFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRL 290
EF +G T V A EV+LAA S S IL+ SG+G ++L I V +LP VG L
Sbjct: 268 EFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNL 326
Query: 291 SLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDV 350
+ T + + + G +++ L+T + +
Sbjct: 327 QDQTT-ATVRSRITSA--GAGQGQAAWFATFNETFGDYSEKAH----ELLNTKLEQWAEE 379
Query: 351 AVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEIN 410
AV + F L ++ + + V + + L P G V I
Sbjct: 380 AVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHIL 439
Query: 411 SNDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK 469
DP + P Y E D+ A ++ + + + E
Sbjct: 440 DKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAG----ETIPGDNLA 495
Query: 470 YQSE-EYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPV 528
Y ++ + I Y H GT M P + VV RV G LRV+
Sbjct: 496 YDADLSAWTEYIPYHFRPNYHGVGTCSMM-PKEMGGVVDNAARVYGVQGLRVI------- 547
Query: 529 EMVTDSS-----------AVALMLAERCATFI 549
D S V +A + + I
Sbjct: 548 ----DGSIPPTQMSSHVMTVFYAMALKISDAI 575
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 251 bits (644), Expect = 1e-76
Identities = 114/572 (19%), Positives = 206/572 (36%), Gaps = 97/572 (16%)
Query: 2 LTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
+ A+L SV ++EAGP D + + + +S DW + P
Sbjct: 28 VAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY--PIEPQENGNS-- 83
Query: 61 NVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIERTK 117
+ AR V+GG S N I + D + WE TGW +Y R+E
Sbjct: 84 ---FMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLET-- 138
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFT-VSDHV 176
+ + + G V + + + + A E G T +
Sbjct: 139 ----NEDAGPDAPHHGDSGPVHLMNVPPK--DPTGVALLDACEQAGIPRAKFNTGTTVVN 192
Query: 177 GIAPP-MYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RN 234
G + DG R +S ++ I ++ + +L FD + + TGV+ +
Sbjct: 193 GANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDS 251
Query: 235 PQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 294
G T ++ A EVVL+ +I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP
Sbjct: 252 AFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311
Query: 295 MFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAV-- 352
+ + K P+ + + + +IG+ F +
Sbjct: 312 EGV-VQFE-AKQPMVAESTQ-------------WWEIGI--FT-------PTEDGLDRPD 347
Query: 353 TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
++ + H + + ++ G V + S
Sbjct: 348 LMMHYGSVPFDMNTLRHGYP---------------TTENGFSLTPNVTHARSRGTVRLRS 392
Query: 412 NDPTKNPTI--RYPLYTEEE-DIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKC 468
D P + RY E D++ ++ ++ + + E+ +
Sbjct: 393 RDFRDKPMVDPRY-FTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR----ELSPGVEA 447
Query: 469 KYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPV 528
Q++E + I+ T HP GT+RMG D ++ + P+ RV G + LRV
Sbjct: 448 --QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVA------- 498
Query: 529 EMVTDSS-----------AVALMLAERCATFI 549
D+S +M+ ERCA I
Sbjct: 499 ----DASVMPEHVTVNPNITVMMIGERCADLI 526
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 241 bits (618), Expect = 5e-73
Identities = 111/570 (19%), Positives = 199/570 (34%), Gaps = 103/570 (18%)
Query: 2 LTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
L A+L VL++EAG PA W ++Q DW + E+ G
Sbjct: 32 LAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAW-PALQGRSYDWDYRTEAQA----GTAG 86
Query: 61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYERW-EGLNMTGWTYSDMDAIYTRIERTKL- 118
+ R++GGSS ++ M + RG D++ W + W + ++ ++ IE L
Sbjct: 87 RAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG 146
Query: 119 -DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVG 177
D + G + I E + L F +A +G + + +G
Sbjct: 147 GDGIH----------GKGGPLPIHLPADEV-SPLARAFIEAGASLGLPRLEGHNSGEMIG 195
Query: 178 IAPPMYYLKDGQRMIASSIFLR-AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ 236
+ P ++DG+R+ A+ +L A++ + + + S V +L + + V +E +
Sbjct: 196 VTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQ--VRSLEVVG-R 252
Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF 296
+ +V A ++VL A ++ S +L +SG+G +L + + ++P +G+ L H +
Sbjct: 253 QGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLG 311
Query: 297 FGLSYTFTK-TPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVT-- 353
G Y K P S +E + + + + A
Sbjct: 312 AGNLYAARKPVPPSRLQHSE---------SMAY---------------MRADSFTAAGQP 347
Query: 354 --QYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINS 411
+ + +A + P + G V I+
Sbjct: 348 EIVVGCGVAP------------IVSESFPAPAAGSA----YSLLFGITHPTSRGSVRISG 391
Query: 412 NDPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKY 470
+ I P Y D + A++ + + ++ +E
Sbjct: 392 PELGDRLIID-PAYLQTGRDRERFRRALEASRTIGHRDELAGWRE-------RELLPGTP 443
Query: 471 QSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEM 530
S I T +HP GT RMG DP AVV + R+ NL VV
Sbjct: 444 NSAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVV--------- 492
Query: 531 VTDSS-----------AVALMLAERCATFI 549
D+S A L +AE A
Sbjct: 493 --DASIMPNLTAGPIHAAVLAIAETFARQY 520
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 238 bits (609), Expect = 1e-71
Identities = 99/561 (17%), Positives = 184/561 (32%), Gaps = 121/561 (21%)
Query: 13 SVLILEAG--PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQARV 70
VL+LE G P A + + + + + + ++ + + RV
Sbjct: 50 KVLVLERGSLPTAYPNVLTADGFV---YNLQQEDDGKTPVER----FVSEDGIDNVRGRV 102
Query: 71 LGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETV 130
LGG+SIIN ++ R + Y W ++ Y +E T + +
Sbjct: 103 LGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYKPNS------- 151
Query: 131 TVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQR 190
+S AF + G F++ G +
Sbjct: 152 ------------------QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGT 193
Query: 191 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE-TKTKVTGVEFR--NPQGKTIKVNANRE 247
A+ L N ++V ++ V K+ F TGV +R N V + E
Sbjct: 194 RHAADELLNKGNSNN-LRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGE 252
Query: 248 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTP 307
V+++A +I + ++L SGVG + LS NIP+V + P VG+ L +P F ++ P
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INIL-PPNP 310
Query: 308 VSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQY-YFPAQDTLFLR 366
+ + T +G+SN + F P + +FP+
Sbjct: 311 IEPTIV---------------TVLGISN--DFYQCSFSSLPF-TTPPFGFFPSSS----- 347
Query: 367 GHLKAWNVNDDLVERFVKVNADKPILIIGLVSLC-PKAEGVVEI-NSNDPTKNPTIRYPL 424
F + P + G + + +S++ +P +++
Sbjct: 348 --------YPLPNSTFAH----------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNY 389
Query: 425 YTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCK-----YQSEEYYRCA 479
Y+ D+ + ++ +K + ++ K ++ + + +
Sbjct: 390 YSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETF 449
Query: 480 IKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS---- 535
+ + H G +G V+ DFRV G + LRVV D S
Sbjct: 450 CRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVV-----------DGSTFPY 492
Query: 536 -------AVALMLAERCATFI 549
LML I
Sbjct: 493 TPASHPQGFYLMLGRYVGIKI 513
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 218 bits (557), Expect = 5e-64
Identities = 94/597 (15%), Positives = 181/597 (30%), Gaps = 125/597 (20%)
Query: 1 CLTAKLLAQSGCSVLILEAGP-------DAPISTAIPAMWHESIQDSKLDWGFVLESNPS 53
+ A L+++G VL+LE G ++ + L +SNP
Sbjct: 20 IIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP- 78
Query: 54 YGLGLKDNVVRLNQAR--VLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYT 111
K + ++GG + +N ++ + D+ G ++++ +
Sbjct: 79 -FWWCK----DITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW---PSSWTNHAPYTS 130
Query: 112 RIERTKLDTVRTETESETVTVD---NDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPD 168
++ T D DG + + N++ S K D
Sbjct: 131 KLSSRLPST------------DHPSTDGQRYLE----QSFNVV-SQLLKGQGYNQATIND 173
Query: 169 TFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVT 228
DH + +G+R + +L+ + N V+ + + ++ +
Sbjct: 174 NPNYKDH-VFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQ--IL 230
Query: 229 GVEFRNP---QGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP- 284
GV+ +P I V V+L+A + + RIL QSG+G ++
Sbjct: 231 GVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAAL 290
Query: 285 ---------GVGKRLSLHPMFFGLSYTFTKTPVSSYTINE--------IIYEYLTQRTGR 327
VG +P L +T + + + +YL ++G
Sbjct: 291 PPQNQWINLPVGMNAQDNPSIN-LVFT-HPSIDAYENWADVWSNPRPADAAQYLANQSGV 348
Query: 328 FTDIGMSNFIGYLDTDFKGNPDVAV--TQYYF-PAQDTLFLRGHLKAWNVNDDLVERFVK 384
F G S + + D Q P ++ +
Sbjct: 349 FA--GASPKLNFWRA--YSGSDGFTRYAQGTVRPGAASVNSS----------------LP 388
Query: 385 VNADKPILIIGLVSLCPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDR- 443
NA + I +S ++ G + I++ + P D +L A+ V
Sbjct: 389 YNASQIFTITVYLSTGIQSRGRIGIDAALRG--TVLTPPWLVNPVDKTVLLQALHDVVSN 446
Query: 444 VMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPL 503
+ + Q EEY + +NH + +G S
Sbjct: 447 IGSIPGLTMITPDVTQ-----------TLEEYVDAYDPA-TMNSNHWVSSTTIG-SSPQS 493
Query: 504 AVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS-----------AVALMLAERCATFI 549
AVV + +V G +NL +V D+ + AE+ A I
Sbjct: 494 AVVDSNVKVFGTNNLFIV-----------DAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 105 bits (262), Expect = 5e-24
Identities = 85/601 (14%), Positives = 168/601 (27%), Gaps = 102/601 (16%)
Query: 1 CLTAKLLAQSGCSVLILEAGP-----------------------------DAPISTAIPA 31
C A+ L +G V + + G +S ++P
Sbjct: 59 CTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPV 118
Query: 32 MWHESIQDSKLDW---GFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQY 88
S W F + + + N+ RV+GG S R +
Sbjct: 119 NTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPR---F 175
Query: 89 DYERWEGLNMTGW--TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTE 146
D E+ L ++ D +YT+ E T + +
Sbjct: 176 DREQRPLLVKDDADADDAEWDRLYTKAES-YFQTGTDQFKESIRH--------------- 219
Query: 147 KINLLRSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNT 206
NL+ + ++ ++ G + ++ +P + +
Sbjct: 220 --NLVLNKLTEEYK--GQRDFQQIPLAAT-RRSPTFVEWSSANTVFDLQNRPNTDAPEER 274
Query: 207 VQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSG 265
+ ++ + +++ + + G ++ A VL A ++++ ++L SG
Sbjct: 275 FNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLVNSG 333
Query: 266 VGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEII--YEYLTQ 323
G + N + LP +G ++ + F + + S + I
Sbjct: 334 FGQLGRPNPAN--PPELLPSLGSYITEQSLVFC-QTVMSTELIDSVKSDMTIRGTPGELT 390
Query: 324 RTGRFTDIGMSNFIGYLDTDFKG--------NPDVAVTQYYFPAQDTLFLRGHLKAWNVN 375
+ +T +N + +P + P TLF H ++
Sbjct: 391 YSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIH 450
Query: 376 DDLVERFVKVNADKPILIIGLVSLC---PKAEGVVEINSN--DPTKNPTIR-YPLYTEEE 429
D + LI+ PK E + + D P +
Sbjct: 451 RDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGR 510
Query: 430 DIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQSEEYYRCAIKYLSTTTNH 489
K + + + + +E H
Sbjct: 511 TSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEP----------------------GLVLH 548
Query: 490 PTGTLRMGP-PSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCATF 548
GT RMG + V D RV GF NL + G IP + + A+ LA + +
Sbjct: 549 LGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEY 608
Query: 549 I 549
I
Sbjct: 609 I 609
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 89.7 bits (222), Expect = 3e-19
Identities = 82/575 (14%), Positives = 147/575 (25%), Gaps = 122/575 (21%)
Query: 1 CLTAKLLAQSGCSVLILEAGP----DAPISTAIPAMWHESIQDS-----------KLDWG 45
++A L ++G L+LE G P M + + S W
Sbjct: 18 AVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWL 77
Query: 46 FVLESNPSYGLGLKDNV----VRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW 101
V+ N G+ D V + + R +GG S++N + + +E
Sbjct: 78 DVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPR---VD 134
Query: 102 TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFED 161
+ D + R + V + + L + F D
Sbjct: 135 SSEMYDRYFPRANS--MLRVNHIDTK-WFEDTEWYKFARVSREQAGKAGLGTVFVPNVYD 191
Query: 162 IGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFD 221
G+ + +A + Y + + +L A V + +V +
Sbjct: 192 FGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQT 251
Query: 222 ETKTKVTGVEFRNPQGKT--IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPL 279
+ VE ++ GK K + R + L A S+ S +L + ++ L
Sbjct: 252 KDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL---------VRARDTGTL 302
Query: 280 VKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGY 339
VG G T + + +G+ +
Sbjct: 303 PNLNSEVGA----GWGPNGNIMTARANHM---------WNPTGAHQSSIPALGIDAWDN- 348
Query: 340 LDTDFKGNPDVAVTQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSL 399
+ V PA L + + +R G
Sbjct: 349 ------SDSSVFAEIAPMPA----GLETWVSLYLAITKNPQR-------------GTFVY 385
Query: 400 CPKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQ 459
+ T + + AV +
Sbjct: 386 ------------DAATDRAKLNWTRDQNAP-------AVNAAKALFD------------- 413
Query: 460 LEIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLR 519
I + Y+ + + + HP G +G RV G+ NL
Sbjct: 414 -RINKANGTIYRYDLFGTQLKAFADDFCYHPLGGCVLG------KATDDYGRVAGYKNLY 466
Query: 520 VVGEPVIPVEMVTDSSAV--AL---MLAERCATFI 549
V +IP S V + LAER I
Sbjct: 467 VTDGSLIP-----GSVGVNPFVTITALAERNVERI 496
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 66.7 bits (162), Expect = 8e-12
Identities = 45/339 (13%), Positives = 89/339 (26%), Gaps = 61/339 (17%)
Query: 3 TAKLLAQSGCSVLILEAGPDAPISTAIP-AMWHESIQDSKLDW---------------GF 46
A L Q+G I+E G + D + W G
Sbjct: 26 AALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI 85
Query: 47 VLESNPSYGLGLK--DNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYS 104
+ G+ + +++ Q R +GG S++N + + +E L
Sbjct: 86 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEI--LPSVDS-NE 142
Query: 105 DMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGF 164
+ + R + ++ + T K + GF
Sbjct: 143 MYNKYFPRANT----------------GLGVNNIDQAWFESTEWYKFARTGRKTAQRSGF 186
Query: 165 KS---PDTFTVSDHVGIAPP----------MYYLKDGQRMIASSIFLRAIKDKNTVQVSK 211
+ P+ + A + Y + + +L + ++
Sbjct: 187 TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITT 246
Query: 212 NSEVTKLCFDETKTKVTGVEFRNPQGKTI--KVNANREVVLAANSINSVRILQQSGVGDA 269
VTK+ +E + QG + KV V AA S+ + ++L
Sbjct: 247 LHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL-------- 298
Query: 270 ALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 308
+ K L VG+ +
Sbjct: 299 -VSMKAQGHLPNLSSQVGEGWGNNGNIMVGRANHMWDAT 336
Score = 45.1 bits (106), Expect = 5e-05
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 486 TTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERC 545
T HP G + + R+ + L VV ++P + + LAER
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERN 497
Query: 546 ATFI 549
I
Sbjct: 498 MDKI 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 3e-09
Identities = 59/422 (13%), Positives = 122/422 (28%), Gaps = 117/422 (27%)
Query: 149 NLLRSTFSKA-FEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTV 207
++ +S SK + I S D + + L L K + V
Sbjct: 40 DMPKSILSKEEIDHI-IMSKDAVSGT---------LRLFW--------TLLS--KQEEMV 79
Query: 208 QVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 267
Q EV ++ + + + E R P T R+ +
Sbjct: 80 QKFVE-EVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLY----------------N 121
Query: 268 DAALLSKYNIP---LVKNL--------PGVGKRLSLHPMF-FGLSYTFTKTPVSSYTINE 315
D + +KYN+ L P K + + + G + SY +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKT-WVALDVCLSYKVQC 178
Query: 316 I----IYEYLTQRTGRFTD---IGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDTLFLRGH 368
I+ +L + + + + +D ++ D + LR
Sbjct: 179 KMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 369 LKAW----------NVND-DLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSNDPTKN 417
LK+ NV + F N IL+ + + V + S T +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAF---NLSCKILLT------TRFKQVTDFLSAATTTH 288
Query: 418 PTI---RYPLYTEE------------------EDIKNILTAVKMV-----DRVMKYRDFK 451
++ L +E E + + ++ D + + ++K
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 452 NFQTNSVQLEIKECAKCKYQSE--EYYR-CAIKYLSTTTNHPTGTLRM----GPPSDPLA 504
+ + + I+ +E + + ++ + + PT L + SD +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 505 VV 506
VV
Sbjct: 407 VV 408
Score = 57.6 bits (138), Expect = 9e-09
Identities = 78/461 (16%), Positives = 122/461 (26%), Gaps = 164/461 (35%)
Query: 11 GCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNVVRLNQA-- 68
C +L+ ++ + A I P L +
Sbjct: 265 SCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDL 318
Query: 69 --RVLGGS----SIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVR 122
VL + SII + I D + +D W + + D + T IE +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN----------WKHVNCDKLTTIIESS------ 362
Query: 123 TETESETVTVDNDGTVTITTIKTEKINLLRST-FSKAFEDIG-FKSPDTFTVSDHVGIAP 180
+N+L + K F+ + F P I
Sbjct: 363 -------------------------LNVLEPAEYRKMFDRLSVF--P------PSAHI-- 387
Query: 181 PMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI 240
P L S+ + K+ V V N + + P+ TI
Sbjct: 388 PTILL---------SLIWFDV-IKSDVMVVVNKLHKYSLVE-----------KQPKESTI 426
Query: 241 KVNANREVVLAANSINSVRI-LQQSGVGDAAL----LSKYNIPLVKNLPGVGKRLSLHPM 295
SI S+ + L+ + AL + YNIP K
Sbjct: 427 -------------SIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFD----------- 460
Query: 296 FFGLSYTFTKTPVSSYTINEIIYEYL---------TQRTGRFTDIGMSNFIGYLDTDF-- 344
S + Y Y ++ +R F + +LD F
Sbjct: 461 ----SDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLFRMV-------FLDFRFLE 504
Query: 345 -KGNPDVAVTQYYFPAQDTLF-LRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPK 402
K D +TL L+ + ND ER V ++ PK
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN----------AILDFLPK 554
Query: 403 AEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDR 443
E E + +R L E+E I A K V R
Sbjct: 555 IE---ENLICSKYTD-LLRIALMAEDEAI--FEEAHKQVQR 589
Score = 38.3 bits (88), Expect = 0.007
Identities = 51/333 (15%), Positives = 106/333 (31%), Gaps = 77/333 (23%)
Query: 303 FTKTPVSSYTINEIIYE-YLTQRTGRFTDI-------GMSNFIG-YLDTDFKGNPDVAVT 353
K+ +S I+ II T R + F+ L ++K T
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 354 QYYFPAQDT-LFLRGHLKAWNVNDDLVERFVKVNADKPILII--GLVSLCPKAEGVV--- 407
+ P+ T +++ + +N N + V+ +P L + L+ L P A+ V+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRP-AKNVLIDG 157
Query: 408 -----------EINSNDP--TKNP------TIRYPLYTEEEDIKNILTAVKMVDRVMKYR 448
++ + K ++ + E ++ + + +D R
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 449 DFKNFQTNSVQLEIKECAKCKYQSEEYYRCAI------------------KYLSTTTN-- 488
+ I+ + +S+ Y C + K L TT
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 489 -------HPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPV--IPVEMVTDS----S 535
T + + S L PD + + +P E++T + S
Sbjct: 277 VTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLS 331
Query: 536 AVALMLAERCATFIQSPVNVTTVTKTTVEKTSV 568
+A + + AT+ +V TT+ ++S+
Sbjct: 332 IIAESIRDGLATWDNWK-HVNCDKLTTIIESSL 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 6e-06
Identities = 55/353 (15%), Positives = 90/353 (25%), Gaps = 133/353 (37%)
Query: 151 LRSTFSKAFE-----DIGFKSPDTFTVSDHVGIAPP-MYYLKDGQRMIASSIFLRAIKDK 204
L T A + D FK F++ D V P + G++ + I++
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-------GKRIREN 1687
Query: 205 ----NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG---KTIKVNANREVVLAANSINS 257
+ T+ F E T FR+ +G T + L +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT----QFTQPALTLMEKAA 1743
Query: 258 VRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEII 317
L+ G+ IP G SL G
Sbjct: 1744 FEDLKSKGL----------IPADATFAG----HSL-----G------------------- 1765
Query: 318 YEY--LTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQYYFPAQDT---LFLRGHLKAW 372
EY L ++ + +F RG
Sbjct: 1766 -EYAAL----------------------------ASLAD-VMSIESLVEVVFYRGMTMQV 1795
Query: 373 NVNDDLVERF----VKVNADKPILIIG------LVSLCPKAEG-VVEI-NSNDPTKNPTI 420
V D + R + +N + +V K G +VEI N N N
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQY 1853
Query: 421 RYPLYTEEEDIKNI----LTAVKMVDRVMKYRDFKNFQ----TNSVQLE-IKE 464
+ L A+ V V+ + + S+ LE ++
Sbjct: 1854 -------------VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 40.0 bits (93), Expect = 0.002
Identities = 66/446 (14%), Positives = 122/446 (27%), Gaps = 167/446 (37%)
Query: 151 LRSTFSKAFEDIGFKSPDTFTVSDHVGIAPP---MYYLKDGQRMIASSIFLRAIKDKNTV 207
L+ F+K + P +D P +L ++ ++ + +
Sbjct: 33 LQEQFNKILPE-----PTEGFAADDEPTTPAELVGKFLG----------YVSSLVEPS-- 75
Query: 208 QVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 267
+V + +V LC E F N L N I+++ +
Sbjct: 76 KVGQFDQVLNLCLTE---------FEN-------------CYLEGNDIHAL-AAKLLQEN 112
Query: 268 DAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGR 327
D L+ + +KN + + K P + N ++ + + +
Sbjct: 113 DTTLVKTKEL--IKN-------------YI-TARIMAKRPFDKKS-NSALFRAVGEGNAQ 155
Query: 328 FTDI--GMSNFIGYLD------TDFKGNPDVAVTQYYFPAQDTL-------------FLR 366
I G N Y + + V + +TL F +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVL----VGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 367 G-HLKAWNVNDDLVERFVKVNADKPIL--------IIGLVSLC-----PKAEGVVEINSN 412
G ++ W N DK L +IG++ L K G
Sbjct: 212 GLNILEWLENPSNT-------PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 413 DPTKNPTIRYPLYTEEEDIKNILTA--VKMVDRVMKYRDFKNFQTNSVQ-LEI-----KE 464
K T + ++TA + D +++F + + + +
Sbjct: 265 SYLKGATGH---------SQGLVTAVAIAETD------SWESFFVSVRKAITVLFFIGVR 309
Query: 465 CAKCKYQSEEYYRCAI--KYLSTTTNHPTGTLRMGPPSDP-LAVVGPDFR---------- 511
C E Y ++ L + + G PS P L++
Sbjct: 310 C-----Y-EAYPNTSLPPSILEDSLEN-----NEGVPS-PMLSISNLTQEQVQDYVNKTN 357
Query: 512 -------------VNGFSNLRVVGEP 524
VNG NL V G P
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPP 383
Score = 33.9 bits (77), Expect = 0.18
Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 57/192 (29%)
Query: 13 SVLILEAGPDAPIS-TAI--PAM--WHESI-QDSKLDWGFVLESNPSY--G--LG----L 58
+ +S T PA+ ++ +D K G + + G LG L
Sbjct: 1715 TSYTFR-SEKGLLSATQFTQPALTLMEKAAFEDLK-SKGLI--PADATFAGHSLGEYAAL 1770
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGS--QYDYERWEGLNMTGWTYSDMDA-----IYT 111
L A V+ S++ +++ RG Q R E G + M A +
Sbjct: 1771 ----ASL--ADVMSIESLV-EVVFYRGMTMQVAVPRDEL----GRSNYGMIAINPGRVAA 1819
Query: 112 RIERTKLDTVRTETESET---VTVDND----------GTV--------TITTIKTEKINL 150
+ L V T V + N G + + IK +KI++
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 151 LRSTFSKAFEDI 162
+ S + E++
Sbjct: 1880 IELQKSLSLEEV 1891
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 44.7 bits (106), Expect = 6e-05
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANRE 247
G +I +A K++ + NS V KL ++ V G + A +
Sbjct: 249 GPEII--DTLRKAAKEQG-IDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGA-KS 303
Query: 248 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVG 287
VVLA + +++ Y P +K++
Sbjct: 304 VVLATGGY----------GMNKEMIAYYR-PTMKDMTSSN 332
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 41.2 bits (97), Expect = 8e-04
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257
L K + + N+ ++ D+ K V G+ + V A+ V+LA
Sbjct: 261 LYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADA-VILATG---- 314
Query: 258 VRILQQSGVG-DAALLSKYNIPLVKNLP 284
G + ++K + P +K
Sbjct: 315 -------GFAKNNERVAKLD-PSLKGFI 334
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 41.2 bits (97), Expect = 8e-04
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 188 GQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANRE 247
G ++ + + V+ + V L D+ +V G+ + GK + V A R
Sbjct: 201 GYMLMK--PLVETAEKLG-VRAEYDMRVQTLVTDD-TGRVVGIVAKQY-GKEVAVRARRG 255
Query: 248 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVG 287
VVLA S + ++ + P + PG
Sbjct: 256 VVLATGSF----------AYNDKMIEAHA-PRLIGRPGAA 284
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 40.5 bits (95), Expect = 0.002
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 198 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 257
L K + NS V ++ D KVTGV + + A+ VV+AA
Sbjct: 261 LWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKADA-VVIAAG---- 314
Query: 258 VRILQQSGVG-DAALLSKYNIPLVKNLP 284
G + +SKY+ P +K
Sbjct: 315 -------GFAKNNERVSKYD-PKLKGFK 334
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.4 bits (89), Expect = 0.006
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 41/170 (24%)
Query: 1 CLTAKLLAQSGCSVLILEAG--PDAPISTAI-PAMWHESIQDSKLDWGFVLESNPSYGLG 57
+ L + G V I E P + ++ P +L LG
Sbjct: 36 SVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMS------------ILNR-----LG 78
Query: 58 LKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTK 117
L++ + N + + + D+ + + ++ ++R +
Sbjct: 79 LQEKIDAQNYVKKPSATFLWGQ---DQAPWTFSFAAPKVAPWVFDHAVQ------VKREE 129
Query: 118 LD------------TVRTETESETVTVDNDGTVTITTIKTEKINLLRSTF 155
D TV ET V + + V +T + + + S F
Sbjct: 130 FDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDF 179
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 37.1 bits (86), Expect = 0.013
Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 43/156 (27%)
Query: 1 CLTAKLLAQSGCSVLILEAG--PDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
+ A L+ +SG V I+E P I ++ E + + G
Sbjct: 18 TVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDE----------------AGF 61
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL 118
D V + G + RG + + GW ++ + R
Sbjct: 62 LDAVKAQGFQQKFGAKFV-------RGKEIADFNFSDQFSNGWNWTWQ------VPRGNF 108
Query: 119 D------------TVRTETESETVTVDNDGTVTITT 142
D V E + +VT
Sbjct: 109 DKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIE 144
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 34.1 bits (78), Expect = 0.11
Identities = 27/157 (17%), Positives = 43/157 (27%), Gaps = 44/157 (28%)
Query: 1 CLTAKLLAQSGCSVLILEAG--PDAPIS-TAIPAMWHESIQDSKLDWGFVLESNPSYGLG 57
A +A G VL+LE P I + +PA H + LG
Sbjct: 20 STLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHG-----------ICAM-----LG 63
Query: 58 LKDNVVRLNQARVLGGSSIINDMIHDRGSQYDY-ERWEGLNMTGWTYSDMDAIYTRIERT 116
L D + R GG+ + + + + +ER
Sbjct: 64 LTDEMKRAGFPIKRGGTFRWGK--EPEPWTFGFTRHPDDPYGFAYQ----------VERA 111
Query: 117 KLD------------TVRTETESETVTVDNDGTVTIT 141
+ D VR E V + + V +
Sbjct: 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVR 148
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 30.6 bits (69), Expect = 1.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 3 TAKLLAQSGCSVLILEA 19
+A L ++G V +LEA
Sbjct: 26 SAFELQKAGYKVTVLEA 42
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.8 bits (70), Expect = 1.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDAP 24
A+ A+ G L++E P+
Sbjct: 17 STAARYAAKYGLKTLMIEKRPEIG 40
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 30.5 bits (69), Expect = 1.4
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 2 LT-AKLLAQSGCSVLILEA 19
L A L ++G SV ++EA
Sbjct: 18 LAAATALRKAGLSVAVIEA 36
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 30.6 bits (69), Expect = 1.7
Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 39/267 (14%)
Query: 3 TAKLLAQSGCSVLILEA------------GPDAPISTAIPAMWHESIQDSKLD--WGFVL 48
A +LA +G V +LEA +A + M + F L
Sbjct: 48 AAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDL 107
Query: 49 ESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDY---ERWEGLNMTGWTYSD 105
N DN + + Y G +
Sbjct: 108 RLNEFSQEN--DNAWYF-----IKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEES 160
Query: 106 MDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSK-AFEDIGF 164
+ + ++RT + + ++ + + + + ++++ ++ + + F
Sbjct: 161 LGKVVEELKRTNCSYILNKYDTYSTK---EYLIKEGDLSPGAVDMIGDLLNEDSGYYVSF 217
Query: 165 KSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETK 224
++ D + DG + ++ R I+DK V N++V K+ ++ K
Sbjct: 218 --IESLKHDDIFAYEKRFDEIVDGMDKLPTA-MYRDIQDK----VHFNAQVIKIQQNDQK 270
Query: 225 TKVTGVEFRNPQGKTIKVNANREVVLA 251
V + +T V A+ V++
Sbjct: 271 VTVV---YETLSKETPSVTADY-VIVC 293
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 12/35 (34%)
Query: 5 KLLAQSGCSVLILEAGPD-APISTAIPAMWHESIQ 38
KL Q+ L L A D AP + AI A +++
Sbjct: 24 KL--QAS---LKLYA-DDSAP-ALAIKA----TME 47
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 29.3 bits (65), Expect = 3.8
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 12/91 (13%)
Query: 61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYER----WEGLNMTGWTYSDM------DAIY 110
V + + + + +Q + R +N T + Y
Sbjct: 344 GGVDFRNN--TADNWAVTNWWDNTNNQISFGRGSSGHMAINKEDSTLTATVQTDMASGQY 401
Query: 111 TRIERTKLDTVRTETESETVTVDNDGTVTIT 141
+ + +L E +TV++DGT+ +
Sbjct: 402 CNVLKGELSADAKSCSGEVITVNSDGTINLN 432
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 29.0 bits (65), Expect = 4.3
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 1 CLTAKLLAQSGCSVLILEAGPD 22
A L++ G +L++++ P
Sbjct: 19 SSAAYQLSRRGLKILLVDSKPW 40
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: d.15.1.1
Length = 100
Score = 27.3 bits (60), Expect = 4.7
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 207 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANR-EVVLAANSINSVRILQQSG 265
V + + + ET+ +TG E R+ +T + N ++V+ + + L++ G
Sbjct: 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQG 79
Query: 266 VG 267
V
Sbjct: 80 VA 81
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 29.0 bits (65), Expect = 5.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 4 AKLLAQSGCSVLILEA 19
AKLL SG +V++LEA
Sbjct: 20 AKLLHDSGLNVVVLEA 35
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A
{Neisseria meningitidis}
Length = 371
Score = 28.9 bits (65), Expect = 5.4
Identities = 10/109 (9%), Positives = 30/109 (27%), Gaps = 19/109 (17%)
Query: 154 TFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNS 213
+ + G + +++ G + +L+ Q + V V +
Sbjct: 24 SLADVLARSGMARDEIARITEKYGGEADLRHLRADQSV--------------HVLVGGDG 69
Query: 214 EVTKL-CFDETKTKVTGVEFRNPQG----KTIKVNANREVVLAANSINS 257
++ F + + V G + + L + + +
Sbjct: 70 GAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTLRSVVVKT 118
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 28.6 bits (64), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 4 AKLLAQSGCSVLILEA 19
A+ L +G VL+LE
Sbjct: 17 ARDLTNAGKKVLLLEG 32
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 28.9 bits (65), Expect = 5.6
Identities = 4/47 (8%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCF 220
+ G +P ++ ++ + + +S+ + + E
Sbjct: 120 ESRGFSP-VHVVQGKKAWMTNSL-KLVTAAEGEGALWFEEEALVCQS 164
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein
structure INIT PSI, midwest center for structural
genomics center, MCSG; 1.85A {Archaeoglobus fulgidus}
SCOP: a.60.4.3 c.52.1.30
Length = 199
Score = 28.1 bits (62), Expect = 6.9
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 88 YDYERWEGLNMTGWTYSDMDAIYTRIERTKLD--TVRTETESETVTVDNDGTVTITTIKT 145
Y G+ +TGW+Y + + I +E L T+ + + G V + +
Sbjct: 110 KKYAGCVGIKLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRAGLVFCRDVVS 169
Query: 146 EKINLLRST 154
LR
Sbjct: 170 AGEEKLREI 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,563,386
Number of extensions: 525347
Number of successful extensions: 1442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1383
Number of HSP's successfully gapped: 53
Length of query: 572
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 473
Effective length of database: 3,937,614
Effective search space: 1862491422
Effective search space used: 1862491422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)