RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10663
(572 letters)
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 132 bits (332), Expect = 2e-34
Identities = 70/306 (22%), Positives = 112/306 (36%), Gaps = 18/306 (5%)
Query: 2 LTAKLLAQSGCSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGL 58
A+L SVL++E+G D + + I S +D + L
Sbjct: 32 TAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGD-IFGSSVDHAYETVE-----LAT 85
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGL-NMTGWTYSDMDAIYTRIERTK 117
+ + LGGS+++N R + + WE + GW + ++ A + ER +
Sbjct: 86 NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 145
Query: 118 LDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAF----EDIGFKSPDTFTVS 173
+ G S KA ED G + F
Sbjct: 146 APNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCG 205
Query: 174 DHVGIAPPMYYLKDGQRMI-ASSIFLRAIKDKNTVQVSKNSEVTKLCFDE--TKTKVTGV 230
D G++ L + Q A+ +L + +QV V K+ + T + GV
Sbjct: 206 DPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGV 265
Query: 231 EFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP-GVGKR 289
EF +G T V A EV+LAA S S IL+ SG+G ++L I V +LP G+
Sbjct: 266 EFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSM 325
Query: 290 LSLHPM 295
+
Sbjct: 326 MPKEMG 331
Score = 39.9 bits (92), Expect = 6e-04
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 485 TTTNHPTGTLRMGPPSDPL-AVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAE 543
T + P G M P + VV RV G LRV+ + P +M + V +A
Sbjct: 314 TVVDLPVGLCSMMP--KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMAL 371
Query: 544 RCATFIQS 551
+ + I
Sbjct: 372 KISDAILE 379
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 119 bits (298), Expect = 7e-30
Identities = 58/307 (18%), Positives = 107/307 (34%), Gaps = 20/307 (6%)
Query: 1 CLTAKLLAQSG-CSVLILEAGP---DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGL 56
A L ++ VL++E G + P + I + +D ++
Sbjct: 37 LTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYG-QIFGTTVDQNYLTVP------ 89
Query: 57 GLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEG-LNMTGWTYSDMDAIYTRIER 115
+ + + + LGGS++IN R + + WE M GW + +M + E
Sbjct: 90 LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEA 149
Query: 116 TKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDH 175
+ T + GT S KA +
Sbjct: 150 ARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFL 209
Query: 176 VGIAPPMYYLKDGQRMIA-----SSIFLRAIKDKNTVQVSKNSEVTKLCFDETK--TKVT 228
G + + + + +L ++ +++ V K+ F +T +
Sbjct: 210 CGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAV 269
Query: 229 GVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP-GVG 287
GV F + V A EV+LAA S S IL+ SG+G ++L + N+ + +LP G+
Sbjct: 270 GVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGIC 329
Query: 288 KRLSLHP 294
+S
Sbjct: 330 SMMSREL 336
Score = 33.0 bits (74), Expect = 0.087
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 488 NHPTGTLRMGPPSDPL-AVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSSAVALMLAERCA 546
+ P G M L VV +V G LRV+ + P ++ + + +A + A
Sbjct: 323 DLPVGICSMMS--RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVA 380
Query: 547 TFIQS 551
I
Sbjct: 381 DAILD 385
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 100 bits (250), Expect = 9e-24
Identities = 43/314 (13%), Positives = 91/314 (28%), Gaps = 32/314 (10%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAM------------------WHESIQDSKL 42
+ A L Q+G I+E G + +
Sbjct: 20 AVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGF 79
Query: 43 DWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWT 102
++ + + +++ Q R +GG S++N + + +E + +
Sbjct: 80 GINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEI---LPSVDS 136
Query: 103 YSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDI 162
+ + R + E+ T KT + + + F D
Sbjct: 137 NEMYNKYFPRANTGLGVNNIDQAWFES---TEWYKFARTGRKTAQRSGFTTAFVPNVYDF 193
Query: 163 GFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE 222
+ + G+ + Y + + +L + ++ VTK+
Sbjct: 194 EYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT 253
Query: 223 TKTKVTGVEFRNPQGKTI--KVNANREVVLAANSINSVRILQQSG-VGDAALLSK----- 274
+E + QG + KV V AA S+ + ++L G LS
Sbjct: 254 GSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEG 313
Query: 275 YNIPLVKNLPGVGK 288
+ + L K G+
Sbjct: 314 WGVLLNKATDNFGR 327
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 99.2 bits (246), Expect = 2e-23
Identities = 66/346 (19%), Positives = 117/346 (33%), Gaps = 42/346 (12%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGL--GL 58
C A L++ VL+LE G P + + + E + + +
Sbjct: 39 CPLAATLSEK-YKVLVLERGSL-------PTAYPNVLTADGFVYNLQQEDDGKTPVERFV 90
Query: 59 KDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKL 118
++ + + RVLGG+SIIN ++ R + Y W ++ Y +E T +
Sbjct: 91 SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIV 146
Query: 119 DTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDHVGI 178
+++ +S AF + G F++ G
Sbjct: 147 YKPNSQS-------------------------WQSVTKTAFLEAGVHPNHGFSLDHEEGT 181
Query: 179 APPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR--NPQ 236
+ A+ L N S + + TGV +R N
Sbjct: 182 RITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGT 241
Query: 237 GKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMF 296
V + EV+++A +I + ++L SGVG + LS NIP+V + P VG+ L +
Sbjct: 242 PHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLD 301
Query: 297 FGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDT 342
T + + Y + G + +G I L
Sbjct: 302 GDFRVTGINA-LRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQE 346
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 98.5 bits (244), Expect = 6e-23
Identities = 42/286 (14%), Positives = 82/286 (28%), Gaps = 27/286 (9%)
Query: 1 CLTAKLLAQSGCSVLILEAGP-DAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLK 59
++A L ++G L+LE G D + W P
Sbjct: 15 AVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWL 74
Query: 60 DNVVR------------------LNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGW 101
D V R + R +GG S++N + + +E
Sbjct: 75 DVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI---LPRVD 131
Query: 102 TYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFED 161
+ D + R +++ + + L + F D
Sbjct: 132 SSEMYDRYFPRANSM---LRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYD 188
Query: 162 IGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFD 221
G+ + +A + Y + + +L A V + +V +
Sbjct: 189 FGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQT 248
Query: 222 ETKTKVTGVEFRNPQGKT--IKVNANREVVLAANSINSVRILQQSG 265
+ VE ++ GK K + R + L A S+ S +L ++
Sbjct: 249 KDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 294
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 93.5 bits (231), Expect = 3e-21
Identities = 28/304 (9%), Positives = 71/304 (23%), Gaps = 26/304 (8%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
C A+ L +G V + + G I A +++ K FV
Sbjct: 17 CTYARELVGAGYKVAMFDIGEIDS-GLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVP 75
Query: 61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYE--------RWEGLNMTGWTYSDMDAIYTR 112
+ + + + + ++ + R
Sbjct: 76 VNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDR 135
Query: 113 IERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTV 172
+R + + D + T + F ++ +
Sbjct: 136 EQR------PLLVKDDADADDAEWDRLYTKAE-SYFQTGTDQFKESIRHNLVLNKLAEEY 188
Query: 173 SDHVGIAPPMYYL----KDGQRMIASSIFLRAIKDKNTVQVSKN------SEVTKLCFDE 222
+++ NT + ++ +
Sbjct: 189 KGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNA 248
Query: 223 TKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKN 282
+++ + + VL A ++++ ++L SG G + N P +
Sbjct: 249 LNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP 308
Query: 283 LPGV 286
G
Sbjct: 309 SLGS 312
Score = 48.8 bits (115), Expect = 1e-06
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 477 RCAIKYLSTTTNHPTGTLRMGP-PSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
G+ RMG + V D RV GF NL + G IP + +
Sbjct: 296 GRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPT 355
Query: 536 AVALMLAERCATFI 549
A+ LA + +I
Sbjct: 356 LTAMSLAIKSCEYI 369
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 90.5 bits (223), Expect = 2e-20
Identities = 51/306 (16%), Positives = 101/306 (33%), Gaps = 35/306 (11%)
Query: 1 CLTAKLLAQSGCSVLILEAGP--DAPISTAIPAMWHESIQDSKLD-----WGFVLESNPS 53
+ A L+++G VL+LE G A W S +K D +SNP
Sbjct: 15 IIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP- 73
Query: 54 YGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRI 113
+ + ++GG + +N ++ + D+ G + ++ +
Sbjct: 74 ---FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTS----- 125
Query: 114 ERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVS 173
+ + D T E+ + S K D
Sbjct: 126 ------------KLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYK 173
Query: 174 DHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 233
DHV + +G+R + +L+ + N V+ + + ++ + GV+
Sbjct: 174 DHVFG-YSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQ--ILGVQTN 230
Query: 234 NPQG---KTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRL 290
+P I V V+L+A + + RIL QSG+G ++ +
Sbjct: 231 DPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQ 290
Query: 291 SL-HPM 295
+ P+
Sbjct: 291 WINLPV 296
Score = 52.3 bits (124), Expect = 6e-08
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 476 YRCAIKYLSTTTNHPTGTLRMGPPSDPLAVVGPDFRVNGFSNLRVVGEPVIPVEMVTDSS 535
A+ + N P G +G AVV + +V G +NL +V +IP +
Sbjct: 281 AAAALPPQNQWINLPVGMTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQ 339
Query: 536 AVALMLAERCATFIQS 551
+ AE+ A I +
Sbjct: 340 GTLMSAAEQAAAKILA 355
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 64.8 bits (157), Expect = 1e-12
Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 30/202 (14%)
Query: 300 SYTFTKTPVSSYTINEI-------IYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAV 352
+ V E + L + ++ + ++ + T K +
Sbjct: 17 AGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYEN-- 74
Query: 353 TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPILIIGLVSLCPKAEGVVEINSN 412
+ + + E F+ + L L P G V I S+
Sbjct: 75 -YRNWL-------------LDEDVAFAELFMDTE---GKINFDLWDLIPFTRGSVHILSS 117
Query: 413 DPTKNPTIRYPLY-TEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECAKCKYQ 471
DP P + E D+ A K+ + K + +
Sbjct: 118 DPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNA 174
Query: 472 SEEYYRCAIKYLSTTTNHPTGT 493
+ + + H +
Sbjct: 175 TLSQWSDYVLQNFRPNWHAVSS 196
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 63.2 bits (153), Expect = 4e-12
Identities = 25/207 (12%), Positives = 51/207 (24%), Gaps = 21/207 (10%)
Query: 293 HPMFFGLSYTFTKTPVSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAV 352
+ T + + + G +++ L+T + + AV
Sbjct: 5 QTTA---TVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHE----LLNTKLEQWAEEAV 57
Query: 353 TQYYFPAQDTLFLRGHLKAWNVNDDLVERFVKVNADKPI-----LIIGLVSLCPKAEGVV 407
+ F L L + D + ++ + + L P G V
Sbjct: 58 ARGGFHNTTAL-----LIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYV 112
Query: 408 EINSNDP-TKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQLEIKECA 466
I DP + + E D+ A ++ + + +
Sbjct: 113 HILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDN 169
Query: 467 KCKYQSEEYYRCAIKYLSTTTNHPTGT 493
+ I Y H GT
Sbjct: 170 LAYDADLSAWTEYIPYHFRPNYHGVGT 196
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 45.5 bits (107), Expect = 3e-06
Identities = 10/111 (9%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 388 DKPILIIGLVSLCPKAEGVVEIN-SNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMK 446
+ P + G + + S++ +P +++ Y+ D+ + ++ +K + ++
Sbjct: 59 NSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLS 118
Query: 447 YRDFKNFQTNSVQLEIKECAKC-----KYQSEEYYRCAIKYLSTTTNHPTG 492
K ++ + + + + + H G
Sbjct: 119 TDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHG 169
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 41.7 bits (97), Expect = 6e-05
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 401 PKAEGVVEINSNDPTKNPTIRYPLYTEEEDIKNILTAVKMVDRVMKYRDFKNFQTNSVQL 460
++ G + I++ + P D +L A+ V + T V
Sbjct: 102 IQSRGRIGIDAALRG--TVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVT- 158
Query: 461 EIKECAKCKYQSEEYYRCAIKYLSTTTNHPTGT 493
Q+ E Y A + +NH +
Sbjct: 159 ----------QTLEEYVDAYDPATMNSNHWVSS 181
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 42.9 bits (99), Expect = 7e-05
Identities = 36/329 (10%), Positives = 82/329 (24%), Gaps = 43/329 (13%)
Query: 1 CLTAKLLAQSGCSVLILEAGPD------------------APISTAIPAMWHESIQDSKL 42
C+ + +++ +G VL ++ P + M + L
Sbjct: 19 CILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDL 78
Query: 43 DWGFVLESNPSYGLGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWT 102
F++ + + L V R +V+ GS + + + E M +
Sbjct: 79 IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFE 138
Query: 103 YSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDI 162
+ + +T + + + I+ + D
Sbjct: 139 KRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDD 198
Query: 163 GFKSP--------DTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSE 214
P ++ S P Y G + + N
Sbjct: 199 YLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSA--IYGGTYMLNKP 256
Query: 215 VTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSK 274
V + + K E G+ + + ++ S R+ G S
Sbjct: 257 VDDIIMENGKVVGVKSE-----GEVARC----KQLICDPSYVPDRVPIDDGSESQVFCSC 307
Query: 275 ------YNIPLVKNLPGVGKRLSLHPMFF 297
+ ++ + KR++ F
Sbjct: 308 SYDATTHFETTCNDIKDIYKRMAGSAFDF 336
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 41.7 bits (96), Expect = 1e-04
Identities = 33/270 (12%), Positives = 65/270 (24%), Gaps = 34/270 (12%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDA-------------PISTAIPAMWHESIQDSKLDWGFV 47
C+ + LL+ G VL ++ P E D +
Sbjct: 18 CILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWN 77
Query: 48 LESNPSYGLGLKDNVVRLNQARVL----------------GGSSIINDMIHDRGSQYDYE 91
++ P + + + L V G + + S
Sbjct: 78 VDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMG 137
Query: 92 RWEGLNMTGWTYSDMDAIYTRIERTKLDTVRTETESETVTVDNDGTVTITTIKTEKINLL 151
+E M + + + + T E G T I
Sbjct: 138 IFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWT 197
Query: 152 RSTFSKAFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSK 211
+ + F+ + S P Y G + F R
Sbjct: 198 NDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQG-FARLSAIYG-GTYML 255
Query: 212 NSEVTKLCFDETKTKVTGVEFRNPQGKTIK 241
++ + ++ + + K GV+ + T K
Sbjct: 256 DTPIDEVLYKKDTGKFEGVK---TKLGTFK 282
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 42.0 bits (97), Expect = 1e-04
Identities = 35/321 (10%), Positives = 83/321 (25%), Gaps = 41/321 (12%)
Query: 3 TAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGF--VLESNPSYGLGLKD 60
A L G ++LE+ A+ ++ ++ G L+ P+
Sbjct: 15 VAHHLRSRGTDAVLLESSARLG-----GAVGTHALAGYLVEQGPNSFLDREPATRALAAA 69
Query: 61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDT 120
+ + R L + + +
Sbjct: 70 LNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPE 129
Query: 121 VRTETESETVTVDNDGTVTITTIKT-----------------------EKINLLRSTFSK 157
E+ + T + + RS
Sbjct: 130 GVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILG 189
Query: 158 AFEDIGFKSPDTFTVSDHVGIAPPMYYLKDGQRMIASSIFLRAIKDKNTVQVSKNSEVTK 217
A + ++ + G + + A+ + V
Sbjct: 190 AIRAQKAQRQAALPAGTAPKLSGALSTFDGG-----LQVLIDALAASLGDAAHVGARVEG 244
Query: 218 LCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSK-YN 276
L ++ ++ E G+ +++ + VVLAA + + ++L+ AAL++ YN
Sbjct: 245 LAREDGGWRLIIEE----HGRRAELSVAQ-VVLAAPAHATAKLLRPLDDALAALVAGIYN 299
Query: 277 IPLVKNLPGVGKRLSLHPMFF 297
+ ++ + + L P
Sbjct: 300 LGHLERVAAIDAALQRLPGLH 320
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 37.0 bits (84), Expect = 0.004
Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 22/257 (8%)
Query: 3 TAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNV 62
A +LA +G V +LEA P + ++ + G+ P V
Sbjct: 45 AAYVLAGAGHQVTVLEASE-------RPGGRVRTYRNE--EAGWYANLGPMRLPEKHRIV 95
Query: 63 VRLNQARVLGGSSII----NDMIHDRGSQY---DYERWEGLNMTGWTYSDMDAIYTRIER 115
+ L + N + + + ++ GL S+ ++
Sbjct: 96 REYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYE 155
Query: 116 TKLDTVRTETESETVTVDNDGTVTITTIKTEKINLLRSTFSKAFEDIGFKSPDTFTVSDH 175
L V E + + + T +T + S + + VS
Sbjct: 156 ESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFI 215
Query: 176 VGIAPPMYYLKDGQRMIA---SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF 232
+ + + + A+ +V N++V K+ ++ K V +
Sbjct: 216 ESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVV---Y 272
Query: 233 RNPQGKTIKVNANREVV 249
+T V A+ +V
Sbjct: 273 ETLSKETPSVTADYVIV 289
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 36.0 bits (82), Expect = 0.008
Identities = 16/145 (11%), Positives = 42/145 (28%), Gaps = 11/145 (7%)
Query: 3 TAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNV 62
A LA+ G SV + + G + + + ++ L NP +
Sbjct: 19 CAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHF-------- 70
Query: 63 VRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVR 122
+ A + ++ ++G Y + L ++ + + ++
Sbjct: 71 --VKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI-L 127
Query: 123 TETESETVTVDNDGTVTITTIKTEK 147
+E V + ++
Sbjct: 128 LRSEVSQVERIQNDEKVRFVLQVNS 152
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 33.5 bits (75), Expect = 0.047
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 8/140 (5%)
Query: 3 TAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKDNV 62
A A+ G +VL+L+ G AI ++ + + N
Sbjct: 17 AAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTN--------RLPLDEIVKHIPGNG 68
Query: 63 VRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDTVR 122
L A + + I + G + E + + + +R
Sbjct: 69 RFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIR 128
Query: 123 TETESETVTVDNDGTVTITT 142
T T ET+ +N T +
Sbjct: 129 TNTPVETIEYENGQTKAVIL 148
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 265
Score = 30.9 bits (68), Expect = 0.34
Identities = 15/139 (10%), Positives = 34/139 (24%), Gaps = 15/139 (10%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
A +L +G V + E P S G V++ + L +
Sbjct: 17 LTAALMLRDAGVDVDVYERSPQPL---------------SGFGTGIVVQPELVHYLLEQG 61
Query: 61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDT 120
+ + GS R+ + ++ L
Sbjct: 62 VELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVG 121
Query: 121 VRTETESETVTVDNDGTVT 139
+ ++E+ + +
Sbjct: 122 LSQDSETVQMRFSDGTKAE 140
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase,
PHBH {Pseudomonas aeruginosa [TaxId: 287]}
Length = 292
Score = 31.1 bits (69), Expect = 0.35
Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 12/143 (8%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDA-----PISTAIPAMWHESIQDSKLDWGFVLESNPSYG 55
L +LL ++G +ILE + + + ++++ +D + G
Sbjct: 15 LLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEG 74
Query: 56 LGLKDNVVRLNQARVLGGSSIINDMIHDRGSQYDYERW---EGLNMTGWTYSDMDAIYTR 112
+ + R + Q + R T +
Sbjct: 75 VEIAFAGQRRRIDLKRLSGGKTVTVYG----QTEVTRDLMEAREACGATTVYQAAEVRLH 130
Query: 113 IERTKLDTVRTETESETVTVDND 135
+ + V E + E + +D D
Sbjct: 131 DLQGERPYVTFERDGERLRLDCD 153
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
demethylase 1, LSD1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 449
Score = 29.9 bits (65), Expect = 0.87
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 3 TAKLLAQSGCSVLILEAGP 21
A+ L G V +LEA
Sbjct: 20 AARQLQSFGMDVTLLEARD 38
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 29.3 bits (64), Expect = 1.3
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 3 TAKLLAQSGCSVLILEAGPDA--PISTAIPAMWHESIQDSKLDWGFVLESNPSYGLGLKD 60
AKLL SG +V++LEA T + ++ SY ++
Sbjct: 14 AAKLLHDSGLNVVVLEARDRVGGRTYTL------------RNQKVKYVDLGGSYVGPTQN 61
Query: 61 NVVRLNQARVLGGSSIINDMIHDRGSQYDYERWEGLNMTGWTYSDMDAIYTRIERTKLDT 120
++RL A+ LG + +++ + + + G + I T
Sbjct: 62 RILRL--AKELG---LETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRT 116
Query: 121 VR 122
+
Sbjct: 117 MD 118
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 221
Score = 28.3 bits (63), Expect = 2.0
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 308 VSSYTINEIIYEYLTQRTGRFTDIGMSNFIGYLDTDFKGNPDVAVTQ 354
+ ++ + + + F D +S + L PD+AV +
Sbjct: 83 RMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIE 129
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 28.4 bits (62), Expect = 2.5
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 1 CLTAKLLAQSGCSVLILEAGPDAPISTAIPAMWH 34
A +G V++LE P +T + A
Sbjct: 36 LAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGM 69
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 28.3 bits (61), Expect = 3.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 3 TAKLLAQSGCSVLILEAGP 21
A L G +V + EA
Sbjct: 16 AAYKLKIHGLNVTVFEAEG 34
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 27.8 bits (60), Expect = 3.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 1 CLTAKLLAQSGCSVLILEAGP 21
A LA+ + + E+G
Sbjct: 17 SAIAYYLAKENKNTALFESGT 37
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 26.9 bits (59), Expect = 5.9
Identities = 11/80 (13%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 170 FTVSDHVGIAPPMYYLKDGQRMIASSI-FLRAIKDKNTVQVSKNSEVTKLCF-DETKTKV 227
+++ G +P ++ ++ + + +S+ + A + + + + + V + +T T V
Sbjct: 115 TVITESRGFSP-VHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPV 173
Query: 228 TGVEFRNPQGKTIKVNANRE 247
+ P G + + E
Sbjct: 174 KNAQRLKP-GAVHVLTHDSE 192
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,077,411
Number of extensions: 99878
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 39
Length of query: 572
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 482
Effective length of database: 1,171,896
Effective search space: 564853872
Effective search space used: 564853872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)