BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10664
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q18678|SYSC_CAEEL Probable serine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=srs-2 PE=3 SV=1
Length = 487
Score = 115 bits (288), Expect = 8e-26, Method: Composition-based stats.
Identities = 52/75 (69%), Positives = 61/75 (81%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG D E G +VAGGRGYFLKGP V L+ ++Q AL + KGY PLYTPFFMRKEVMQ
Sbjct: 176 MVDGFDGERGTVVAGGRGYFLKGPLVFLEQAIIQLALQRLNVKGYVPLYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFD+ELYK+
Sbjct: 236 EVAQLSQFDDELYKV 250
>sp|Q4R4U9|SYSC_MACFA Serine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=SARS
PE=2 SV=3
Length = 514
Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats.
Identities = 52/75 (69%), Positives = 61/75 (81%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG + E GA+VAG RGYFLKG V L+ L+QYAL +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250
>sp|P26638|SYSC_MOUSE Serine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Sars PE=2 SV=3
Length = 512
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 62/75 (82%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG + E GA+VAG RGYFLKGP V L+ L+QYAL +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGPLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250
>sp|Q9GMB8|SYSC_BOVIN Serine--tRNA ligase, cytoplasmic OS=Bos taurus GN=SARS PE=2 SV=3
Length = 514
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/75 (68%), Positives = 61/75 (81%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG + E GA+VAG RGYFLKG V L+ L+Q+AL +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQFALRTLASRGYTPIYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250
>sp|Q5R9K9|SYSC_PONAB Serine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=SARS PE=2 SV=3
Length = 514
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG + E GA+VAG RGYFLKG V L+ L+QYAL +GY P+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250
>sp|P49591|SYSC_HUMAN Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3
Length = 514
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/75 (68%), Positives = 60/75 (80%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG + E GA+VAG RGYFLKG V L+ L+QYAL +GY P+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250
>sp|Q6P799|SYSC_RAT Serine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Sars PE=1
SV=3
Length = 512
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 61/75 (81%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M+DG + E GA+VAG RGYFLKG V L+ L+QYAL +GYTP+YTPFFMRKEVMQ
Sbjct: 176 MVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYTPIYTPFFMRKEVMQ 235
Query: 61 EVAQLAQFDEELYKM 75
EVAQL+QFDEELYK+
Sbjct: 236 EVAQLSQFDEELYKV 250
>sp|Q7KWQ2|SYSC_DICDI Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=serS PE=1 SV=1
Length = 451
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
MIDG D E G +V+G R YFLKG V L ++ +AL ++G PL TPFFM K+VM
Sbjct: 150 MIDGYDPERGTLVSGHRCYFLKGIGVLLNQAIINFALMHMTKRGSVPLQTPFFMNKDVMA 209
Query: 61 EVAQLAQFDEELYKM 75
+ AQL QFD+ELYK+
Sbjct: 210 KTAQLEQFDDELYKV 224
>sp|O81983|SYS_HELAN Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1
Length = 438
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/70 (57%), Positives = 50/70 (71%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D + GA VAGGRGY+LKG V L L+ + L ++ YT L TPFFMRK++M + AQL
Sbjct: 154 DLKKGANVAGGRGYYLKGDGVRLNQALINFGLDFLEKRKYTALQTPFFMRKDIMGKCAQL 213
Query: 66 AQFDEELYKM 75
AQFDEELYK+
Sbjct: 214 AQFDEELYKV 223
>sp|Q2NEU9|SYS_METST Serine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=serS PE=3 SV=1
Length = 424
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 55/75 (73%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
+IDG D++ + +AG R Y+LK + L + L+Q+AL++ +KGYTPL TPFF++ EV +
Sbjct: 145 LIDGADTDTASQIAGSRFYYLKQDILFLNLALIQFALNELKDKGYTPLQTPFFIKSEVAE 204
Query: 61 EVAQLAQFDEELYKM 75
E ++L +F+E LYK+
Sbjct: 205 ETSELGEFEETLYKV 219
>sp|Q39230|SYS_ARATH Serine--tRNA ligase OS=Arabidopsis thaliana GN=At5g27470 PE=2 SV=1
Length = 451
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D++ GA +AG RG+FLKG + L L+ + L+ ++G+T L PFFMRK+VM + AQL
Sbjct: 157 DTKRGAEIAGARGFFLKGDGLMLNQALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQL 216
Query: 66 AQFDEELYKM 75
AQFDEELYK+
Sbjct: 217 AQFDEELYKV 226
>sp|Q9HGT6|SYSC_CANAL Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=SES1 PE=1 SV=1
Length = 462
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
+DG D E G + G RGYFL+ V L L+ Y LS KGY PL P M KEVM +
Sbjct: 161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAK 220
Query: 62 VAQLAQFDEELYKM 75
AQL+QFDEELYK+
Sbjct: 221 TAQLSQFDEELYKV 234
>sp|O14018|SYSC_SCHPO Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC29A4.15 PE=3 SV=1
Length = 450
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 46/74 (62%)
Query: 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
+DG D E G V+G RGYFL+ V + L+QY L ++GY L P + K+VM +
Sbjct: 153 LDGYDPERGVKVSGHRGYFLRQYGVFFNLALIQYGLDFLEKRGYIALQAPTMLNKDVMAK 212
Query: 62 VAQLAQFDEELYKM 75
AQL QFDEELYK+
Sbjct: 213 TAQLEQFDEELYKV 226
>sp|P07284|SYSC_YEAST Serine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SES1 PE=1 SV=2
Length = 462
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
+DG D + G + G RGYF + V L L+ Y L KGY PL P M KE+M +
Sbjct: 161 LDGYDPDRGVKICGHRGYFFRNYGVFLNQALINYGLQFLAAKGYIPLQAPVMMNKELMSK 220
Query: 62 VAQLAQFDEELYKM 75
AQL++FDEELYK+
Sbjct: 221 TAQLSEFDEELYKV 234
>sp|Q8SS48|SYS_ENCCU Serine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU04_0750 PE=1 SV=1
Length = 429
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
M D S AGA V G RGY+L G L L +YA+ KGYT + TP +R++VM+
Sbjct: 151 MKDFTHSVAGAKVMGHRGYYLSGKMARLAQALTRYAIDFLENKGYTYIQTPVMLRRDVMR 210
Query: 61 EVAQLAQFDEELYKM 75
+ +QL+ FD++LYK+
Sbjct: 211 KTSQLSDFDDQLYKV 225
>sp|A1R120|SYS_ARTAT Serine--tRNA ligase OS=Arthrobacter aurescens (strain TC1) GN=serS
PE=3 SV=1
Length = 426
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
+I +D E GA V+G R YFL+G L++ L+Q A+ + I+ G+ P+ TP +R E MQ
Sbjct: 144 LIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIDAGFVPMITPTLVRPETMQ 203
Query: 61 EVAQLAQFDEELYKM 75
+ D E+Y++
Sbjct: 204 GTGFDVKHDAEIYRL 218
>sp|B8H9Q1|SYS_ARTCA Serine--tRNA ligase OS=Arthrobacter chlorophenolicus (strain A6 /
ATCC 700700 / DSM 12829 / JCM 12360) GN=serS PE=3 SV=1
Length = 426
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
+I +D E GA V+G R YFL+G L++ L+Q A+ + IE G+ P+ TP +R E MQ
Sbjct: 144 LIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIEAGFIPMITPTLVRPETMQ 203
Query: 61 EVAQLAQFDEELYKM 75
+ D E+Y++
Sbjct: 204 GTGFDVKHDAEIYRL 218
>sp|A0JR71|SYS_ARTS2 Serine--tRNA ligase OS=Arthrobacter sp. (strain FB24) GN=serS PE=3
SV=1
Length = 426
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
+I +D E GA V+G R YFL+G L++ L+Q A+ + I+ G+ P+ TP +R E MQ
Sbjct: 144 LIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIDAGFIPMITPTLVRPETMQ 203
Query: 61 EVAQLAQFDEELYKM 75
+ D E+Y++
Sbjct: 204 GTGFDVKHDAEIYRL 218
>sp|C6A4A3|SYS_THESM Serine--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=serS PE=3 SV=1
Length = 455
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
I G D E A V+G R ++L V L + L+++AL K IEKG+ P+ P+ +RK V +
Sbjct: 169 IGGADLERAAKVSGARFFYLLNELVILDLSLIRFALDKLIEKGFIPVIPPYMVRKYVEEG 228
Query: 62 VAQLAQFDEELYKM 75
V F++ +YK+
Sbjct: 229 VTSFGDFEDVIYKI 242
>sp|B1Y0I6|SYS_LEPCP Serine--tRNA ligase OS=Leptothrix cholodnii (strain ATCC 51168 /
LMG 8142 / SP-6) GN=serS PE=3 SV=1
Length = 431
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 4 GVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALS-KWIEKGYTPLYTPFFMRKEVMQEV 62
G+D E A ++G R FLKGPA L L Q+ L + E GYT YTP+ + +EV++
Sbjct: 150 GLDFETSAKLSGARFSFLKGPAARLHRALAQFMLDVQTQEHGYTECYTPYIVNREVLEGT 209
Query: 63 AQLAQFDEELY 73
QL +F E+++
Sbjct: 210 GQLPKFKEDMF 220
>sp|B6YWW5|SYS_THEON Serine--tRNA ligase OS=Thermococcus onnurineus (strain NA1) GN=serS
PE=3 SV=1
Length = 457
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ G D E A V+G R Y+L V L + L+++AL K IEKG+ P+ P+ +R+ V +
Sbjct: 168 ILRGADIERAAKVSGSRFYYLLNELVILDLALIRFALDKLIEKGFIPVIPPYMVRRYVEE 227
Query: 61 EVAQLAQFDEELYKM 75
V F++ +YK+
Sbjct: 228 GVTSFGDFEDVIYKV 242
>sp|Q5JE75|SYS_PYRKO Serine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=serS PE=3 SV=1
Length = 455
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ G D E A V+G R Y+L V L + L+++AL K IEKG+TP+ P+ +R+ V +
Sbjct: 168 LLRGADLERAAKVSGARFYYLLNELVILDLALIRFALDKLIEKGFTPVIPPYMVRRFVEE 227
Query: 61 EVAQLAQFDEELYKM 75
F++ +YK+
Sbjct: 228 GATTFDDFEDVIYKV 242
>sp|A5UYX1|SYS_ROSS1 Serine--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=serS PE=3
SV=1
Length = 424
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
+D +D E G ++G R Y LKGP LQ L+Q+ L ++GY +YTPF ++++ M
Sbjct: 146 LDIIDFERGVKLSGSRFYVLKGPGARLQRALIQWMLDLHGKQGYDEVYTPFVVKEQCMWG 205
Query: 62 VAQLAQFDEELYK 74
QL +F + LY+
Sbjct: 206 ARQLPKFRDNLYR 218
>sp|C5A226|SYS_THEGJ Serine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM 15229
/ JCM 11827 / EJ3) GN=serS PE=3 SV=1
Length = 455
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ G D E A V+G R Y+L V L + L+++AL + IEKG+TP+ P+ +R+ V +
Sbjct: 168 LLRGADLERAAKVSGSRFYYLLNELVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEE 227
Query: 61 EVAQLAQFDEELYKM 75
F++ +YK+
Sbjct: 228 GATTFEDFEDVIYKV 242
>sp|A7NJB8|SYS_ROSCS Serine--tRNA ligase OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=serS PE=3 SV=1
Length = 424
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61
+D +D E G ++G R Y LKG LQ L+Q+ L I++GY +YTPF ++++ M
Sbjct: 146 LDIIDFERGVKLSGSRFYVLKGLGARLQRALIQWMLDLHIQQGYHEVYTPFVVKEQCMWG 205
Query: 62 VAQLAQFDEELYK 74
QL +F + LY+
Sbjct: 206 ARQLPKFRDNLYR 218
>sp|A2SJA7|SYS_METPP Serine--tRNA ligase OS=Methylibium petroleiphilum (strain PM1)
GN=serS PE=3 SV=1
Length = 432
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 4 GVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALS-KWIEKGYTPLYTPFFMRKEVMQEV 62
G+D E GA ++G R FL+GP L L Q+ L + E GYT YTP+ + +EV++
Sbjct: 150 GLDFETGAKLSGARFSFLRGPVARLHRALAQFMLDVQTQEHGYTECYTPYIVNREVLEGT 209
Query: 63 AQLAQFDEELY 73
QL +F+ +++
Sbjct: 210 GQLPKFEADMF 220
>sp|Q0W8S5|SYS_UNCMA Serine--tRNA ligase OS=Uncultured methanogenic archaeon RC-I
GN=serS PE=3 SV=1
Length = 425
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D E A VAG YFLKG V L + L ++A+ +++G+TP+ P+ M ++ + V L
Sbjct: 153 DFERAAKVAGAGFYFLKGNMVLLDMALQRFAMDLLVKRGFTPVTPPYMMNRKSYEGVTDL 212
Query: 66 AQFDEELYKM 75
A F++ +YK+
Sbjct: 213 ADFEKVMYKI 222
>sp|Q2FS27|SYS_METHJ Serine--tRNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=serS PE=3 SV=1
Length = 425
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 3 DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
D D E +G YFLKG V L + L +++L +EKGYTP+ P+ + ++ +EV
Sbjct: 150 DWADFERATKTSGAGFYFLKGNLVLLDLALQRFSLDILMEKGYTPIIPPYMINRKSYEEV 209
Query: 63 AQLAQFDEELYKM 75
L F++ +YK+
Sbjct: 210 TDLDDFEKVMYKI 222
>sp|O58441|SYS_PYRHO Serine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=serS PE=1
SV=2
Length = 455
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ G D A V+G R Y+L V L + L+++AL + IEKG+TP+ P+ +R+ V +
Sbjct: 168 ILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEE 227
Query: 61 EVAQLAQFDEELYKM 75
F++ +YK+
Sbjct: 228 GSTSFEDFEDVIYKV 242
>sp|Q8U1K2|SYS_PYRFU Serine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=serS PE=3 SV=1
Length = 455
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ G D A V+G R Y+L V L + L+++AL + IEKG+TP+ P+ +R+ V +
Sbjct: 168 ILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEE 227
Query: 61 EVAQLAQFDEELYKM 75
F++ +YK+
Sbjct: 228 GSTTFEDFEDVIYKV 242
>sp|A2SRC6|SYS_METLZ Serine--tRNA ligase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=serS PE=3 SV=1
Length = 425
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D E +G YFLKG L + L ++AL I KGYTP+ P+ M ++ +EV L
Sbjct: 153 DFERATKTSGAGFYFLKGNLALLDMALQRFALDTIIAKGYTPIIPPYMMNRKSYEEVTDL 212
Query: 66 AQFDEELYKM 75
F++ +YK+
Sbjct: 213 GDFEKVMYKI 222
>sp|Q6AH61|SYS_LEIXX Serine--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=serS PE=3 SV=1
Length = 421
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ +D GA V+G R FL+G L++ L+ AL K + G+ PL TP ++ EVMQ
Sbjct: 143 LLGAIDMARGAKVSGARFSFLRGLGARLEIALMNLALDKALANGFVPLITPTLVKPEVMQ 202
Query: 61 EVAQLAQFDEELYKM 75
L + +E+Y +
Sbjct: 203 GTGFLGEHSDEVYHL 217
>sp|A3CTP4|SYS_METMJ Serine--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1) GN=serS PE=3 SV=1
Length = 425
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D E A +AG YFLKG L + L ++A+ +E GYTP+ P+ M + + V L
Sbjct: 153 DFERAAKIAGSGFYFLKGRLALLDMALQRFAMDILVEHGYTPIIPPYMMNRAAYEGVTDL 212
Query: 66 AQFDEELYKM 75
A F+ +Y++
Sbjct: 213 ADFENVMYRI 222
>sp|B0RCF1|SYS_CLAMS Serine--tRNA ligase OS=Clavibacter michiganensis subsp. sepedonicus
(strain ATCC 33113 / JCM 9667) GN=serS PE=3 SV=1
Length = 426
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++D +D GA V+G R +FLKG L++ L+ + L++ +E G PL TP ++ E+M
Sbjct: 143 ILDAIDMGRGAKVSGARFHFLKGIGARLEIALMNFGLARALEAGLVPLITPTLVKPEIMA 202
Query: 61 EVAQLAQFDEELYKM 75
L +E+Y +
Sbjct: 203 GTGFLGAHADEVYHL 217
>sp|C4LGQ1|SYS_CORK4 Serine--tRNA ligase OS=Corynebacterium kroppenstedtii (strain DSM
44385 / CCUG 35717) GN=serS PE=3 SV=1
Length = 423
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E GA V+G R YFLKG LQ+G++Q A K ++ G+ + TP + E M
Sbjct: 150 IDMERGAKVSGSRFYFLKGAGALLQLGMLQLAAQKAVQHGFELMITPVIVNPESMSGTGF 209
Query: 65 LAQFDEELY 73
L Q +E+Y
Sbjct: 210 LGQHADEIY 218
>sp|C5BWI5|SYS_BEUC1 Serine--tRNA ligase OS=Beutenbergia cavernae (strain ATCC BAA-8 /
DSM 12333 / NBRC 16432) GN=serS PE=3 SV=1
Length = 423
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 4 GVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63
+D+E GA V+G R ++L G L++ L+ A+ K + G+TP+ TP ++ E+M
Sbjct: 149 AIDTERGAKVSGARFFYLTGLGARLELALLNAAIDKALTAGFTPVITPTLVKPEIMAGTG 208
Query: 64 QLAQFDEELYKM 75
L EE+Y++
Sbjct: 209 FLGAHAEEVYRI 220
>sp|B9LIV1|SYS_CHLSY Serine--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29364
/ DSM 637 / Y-400-fl) GN=serS PE=3 SV=1
Length = 423
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E G +AG R Y ++G LQ ++Q+ + +E+GY +YTPF +++ V+ Q
Sbjct: 149 IDFERGVKLAGSRFYVMRGAGARLQRAVIQWLIDLHLEQGYQEVYTPFVVKESVLWASGQ 208
Query: 65 LAQFDEELYK 74
L +F + LY+
Sbjct: 209 LPKFRDNLYR 218
>sp|A9WE34|SYS_CHLAA Serine--tRNA ligase OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=serS PE=3 SV=1
Length = 423
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E G +AG R Y ++G LQ ++Q+ + +E+GY +YTPF +++ V+ Q
Sbjct: 149 IDFERGVKLAGSRFYVMRGAGARLQRAVIQWLIDLHLEQGYQEVYTPFVVKESVLWASGQ 208
Query: 65 LAQFDEELYK 74
L +F + LY+
Sbjct: 209 LPKFRDNLYR 218
>sp|Q31HK9|SYS_THICR Serine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=serS PE=3 SV=1
Length = 428
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D++A +A R LKGP LQ L Q+ L + GY +Y PF + ++ + QL
Sbjct: 150 DNDAAVKIASSRFSVLKGPMAKLQRALTQFMLDSHTDAGYEEVYVPFLVNQDSLHGTGQL 209
Query: 66 AQFDEELYKM 75
+F+ +LYK+
Sbjct: 210 PKFEADLYKI 219
>sp|A1TGX4|SYS_MYCVP Serine--tRNA ligase OS=Mycobacterium vanbaalenii (strain DSM 7251 /
PYR-1) GN=serS PE=3 SV=1
Length = 419
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E GA V+G R YFL G LQ+GL Q A+ E G+T + P +R E+M
Sbjct: 146 IDMERGAKVSGSRFYFLTGFGALLQLGLFQLAVRTATENGFTLVIPPVLVRPEIMSGTGF 205
Query: 65 LAQFDEELYKM 75
L +E+Y++
Sbjct: 206 LGAHADEVYRV 216
>sp|A3Q7P6|SYS_MYCSJ Serine--tRNA ligase OS=Mycobacterium sp. (strain JLS) GN=serS PE=3
SV=1
Length = 417
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E GA VAG R YFL G LQ+GL+Q A+ + G+T + P +R EVM
Sbjct: 146 IDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVRLATDNGFTLVIPPVLVRPEVMAGTGF 205
Query: 65 LAQFDEELYKM 75
L +E+Y++
Sbjct: 206 LGAHADEVYRL 216
>sp|Q1B1V1|SYS_MYCSS Serine--tRNA ligase OS=Mycobacterium sp. (strain MCS) GN=serS PE=3
SV=1
Length = 417
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E GA VAG R YFL G LQ+GL+Q A+ + G+T + P +R EVM
Sbjct: 146 IDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVRLATDNGFTLVIPPVLVRPEVMAGTGF 205
Query: 65 LAQFDEELYKM 75
L +E+Y++
Sbjct: 206 LGAHADEVYRL 216
>sp|A1UN98|SYS_MYCSK Serine--tRNA ligase OS=Mycobacterium sp. (strain KMS) GN=serS PE=3
SV=1
Length = 417
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E GA VAG R YFL G LQ+GL+Q A+ + G+T + P +R EVM
Sbjct: 146 IDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVRLATDNGFTLVIPPVLVRPEVMAGTGF 205
Query: 65 LAQFDEELYKM 75
L +E+Y++
Sbjct: 206 LGAHADEVYRL 216
>sp|A5CNA2|SYS_CLAM3 Serine--tRNA ligase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=serS PE=3 SV=1
Length = 426
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++D +D GA V+G R ++LKG L++ L+ + L++ +E G PL TP ++ E+M
Sbjct: 143 ILDAIDMGRGAKVSGARFHYLKGIGARLEIALMNFGLARALEAGLVPLITPTLVKPEIMA 202
Query: 61 EVAQLAQFDEELYKM 75
L +E+Y +
Sbjct: 203 GTGFLGAHADEVYHL 217
>sp|B2GGG9|SYS_KOCRD Serine--tRNA ligase OS=Kocuria rhizophila (strain ATCC 9341 / DSM
348 / NBRC 103217 / DC2201) GN=serS PE=3 SV=1
Length = 434
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++DG+D E GA V+G R YFLK L+ L+ A ++ G+ P+ TP +R +M
Sbjct: 146 LLDGIDMERGAKVSGSRFYFLKRDVARLETALLMAAQDLALDNGFIPMTTPNLVRPGIMN 205
Query: 61 EVAQLAQFDEELYKM 75
+ D+E+Y++
Sbjct: 206 GTGFDVEHDDEIYRV 220
>sp|Q9UZ21|SYS_PYRAB Serine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=serS PE=3 SV=1
Length = 455
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ G D A V+G R Y+L V L + L+++AL + I+KG+TP+ P+ +R+ V +
Sbjct: 168 ILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDELIKKGFTPVIPPYMVRRFVEE 227
Query: 61 EVAQLAQFDEELYKM 75
F++ +YK+
Sbjct: 228 GSTTFEDFEDVIYKV 242
>sp|C5C878|SYS_MICLC Serine--tRNA ligase OS=Micrococcus luteus (strain ATCC 4698 / DSM
20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 /
VKM Ac-2230) GN=serS PE=3 SV=1
Length = 427
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQ 60
++ +D E GA V+G R FL G L++ L+Q L +E G+ P+ P +R E MQ
Sbjct: 146 LLGAIDMERGAKVSGARFSFLTGVGARLELALMQLGLDLALENGFVPVIPPTLVRPETMQ 205
Query: 61 EVAQLAQFDEELYKM 75
+ D+E+Y++
Sbjct: 206 GTGFDVEHDDEIYRL 220
>sp|B8G8S1|SYS_CHLAD Serine--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 / DSM
9485) GN=serS PE=3 SV=1
Length = 426
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 5 VDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQ 64
+D E G +AG R Y ++G LQ ++Q+ L + +GY +YTPF +++ V+ Q
Sbjct: 149 LDFERGVKLAGSRFYVMRGAGARLQRAVIQWLLDLHLRQGYQEIYTPFVVKESVLWASGQ 208
Query: 65 LAQFDEELYK 74
L +F + LY+
Sbjct: 209 LPKFRDNLYR 218
>sp|Q970Y4|SYS_SULTO Serine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=serS PE=3 SV=1
Length = 453
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65
D++ A V+G R Y+L V L + L+ YA+ KGYT + P+ +R EV++ V L
Sbjct: 173 DTKKAAEVSGARFYYLFDDIVWLDIALLNYAIDTMTSKGYTLVLPPYMLRGEVIKSVIDL 232
Query: 66 AQFDEELYKM 75
F + +YK+
Sbjct: 233 DTFKDAIYKI 242
>sp|Q82FK8|SYS1_STRAW Serine--tRNA ligase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=serS1 PE=3 SV=1
Length = 425
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 4 GVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63
+D E GA V+G R Y+L G L++ LV A+++ E G+ P+ TP +R M+
Sbjct: 149 AIDVERGAKVSGSRFYYLTGVGALLELALVNAAIAQATEAGFIPMLTPALVRPRAMEGTG 208
Query: 64 QLAQFDEELYKM 75
L Q E +Y +
Sbjct: 209 FLGQASENVYHL 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,367,709
Number of Sequences: 539616
Number of extensions: 985115
Number of successful extensions: 3372
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 2643
Number of HSP's gapped (non-prelim): 737
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)