Query psy10664
Match_columns 75
No_of_seqs 103 out of 1099
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 15:27:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0172 SerS Seryl-tRNA synthe 99.9 1.5E-26 3.2E-31 171.5 6.0 75 1-75 149-223 (429)
2 PLN02678 seryl-tRNA synthetase 99.9 5.1E-26 1.1E-30 169.4 6.5 75 1-75 149-223 (448)
3 TIGR00414 serS seryl-tRNA synt 99.9 3.5E-24 7.6E-29 158.1 6.5 75 1-75 148-222 (418)
4 PRK05431 seryl-tRNA synthetase 99.9 3.6E-24 7.7E-29 158.3 6.2 75 1-75 145-220 (425)
5 PLN02320 seryl-tRNA synthetase 99.9 3.9E-24 8.4E-29 161.1 6.5 75 1-75 208-283 (502)
6 KOG2509|consensus 99.9 8.8E-24 1.9E-28 156.5 5.9 73 2-74 161-233 (455)
7 cd00770 SerRS_core Seryl-tRNA 99.9 3.3E-23 7.2E-28 146.9 6.5 75 1-75 27-101 (297)
8 PLN02837 threonine-tRNA ligase 99.9 8.9E-22 1.9E-26 150.6 6.6 72 1-75 225-296 (614)
9 cd00771 ThrRS_core Threonyl-tR 99.7 2.4E-18 5.2E-23 121.9 6.7 72 1-75 8-79 (298)
10 PRK00960 seryl-tRNA synthetase 99.7 3.6E-18 7.9E-23 129.3 6.0 70 1-75 203-273 (517)
11 PRK14799 thrS threonyl-tRNA sy 99.7 7.1E-18 1.5E-22 128.2 6.4 72 1-75 146-217 (545)
12 PLN02908 threonyl-tRNA synthet 99.7 1.5E-17 3.2E-22 128.7 6.5 71 1-75 300-370 (686)
13 cd00778 ProRS_core_arch_euk Pr 99.7 5.3E-17 1.2E-21 113.3 5.9 70 1-75 12-82 (261)
14 TIGR00415 serS_MJ seryl-tRNA s 99.7 5.6E-17 1.2E-21 122.7 5.5 70 1-75 203-273 (520)
15 KOG1637|consensus 99.7 6.8E-17 1.5E-21 121.4 4.0 62 14-75 180-241 (560)
16 PRK03991 threonyl-tRNA synthet 99.6 6.1E-16 1.3E-20 119.0 6.1 72 1-75 205-276 (613)
17 TIGR00418 thrS threonyl-tRNA s 99.6 1.2E-15 2.7E-20 115.0 6.7 72 1-75 178-249 (563)
18 PRK12305 thrS threonyl-tRNA sy 99.6 1.5E-15 3.3E-20 114.8 6.8 72 1-75 184-255 (575)
19 COG0441 ThrS Threonyl-tRNA syn 99.6 1.3E-15 2.9E-20 116.8 3.4 71 1-74 198-268 (589)
20 cd00779 ProRS_core_prok Prolyl 99.5 1E-14 2.2E-19 101.5 6.2 63 13-75 18-80 (255)
21 PRK12444 threonyl-tRNA synthet 99.5 2.2E-14 4.8E-19 110.0 6.1 70 1-74 253-322 (639)
22 PRK04173 glycyl-tRNA synthetas 99.5 3.3E-14 7.1E-19 106.2 5.2 59 16-74 28-88 (456)
23 PRK12325 prolyl-tRNA synthetas 99.5 6.4E-14 1.4E-18 103.9 6.1 62 14-75 35-96 (439)
24 PRK00413 thrS threonyl-tRNA sy 99.4 4.8E-13 1E-17 102.1 6.2 71 1-75 249-319 (638)
25 PRK08661 prolyl-tRNA synthetas 99.4 6.1E-13 1.3E-17 99.7 6.1 70 1-75 24-94 (477)
26 PRK09194 prolyl-tRNA synthetas 99.4 7.8E-13 1.7E-17 100.6 6.1 62 14-75 35-96 (565)
27 cd00772 ProRS_core Prolyl-tRNA 99.3 2.4E-12 5.1E-17 90.3 6.5 60 15-74 21-81 (264)
28 TIGR00409 proS_fam_II prolyl-t 99.3 3.9E-12 8.4E-17 97.3 6.1 63 13-75 34-96 (568)
29 TIGR00408 proS_fam_I prolyl-tR 99.2 1.9E-11 4.1E-16 91.7 5.8 69 2-75 19-88 (472)
30 PF00587 tRNA-synt_2b: tRNA sy 99.1 3.2E-11 7E-16 78.9 1.7 48 28-75 1-49 (173)
31 cd00670 Gly_His_Pro_Ser_Thr_tR 99.0 6.9E-10 1.5E-14 74.8 4.8 51 25-75 1-51 (235)
32 COG0442 ProS Prolyl-tRNA synth 98.5 2.7E-07 5.9E-12 70.3 5.2 62 14-75 35-96 (500)
33 TIGR00389 glyS_dimeric glycyl- 98.2 3.1E-06 6.7E-11 65.2 5.5 59 15-73 26-85 (551)
34 cd00774 GlyRS-like_core Glycyl 98.1 6.1E-06 1.3E-10 57.5 4.7 53 15-67 21-76 (254)
35 PRK00037 hisS histidyl-tRNA sy 98.1 6.6E-06 1.4E-10 60.0 4.6 60 15-74 7-68 (412)
36 cd00773 HisRS-like_core Class 97.9 1.6E-05 3.4E-10 55.1 4.2 49 26-75 2-50 (261)
37 CHL00201 syh histidine-tRNA sy 97.8 3.5E-05 7.6E-10 57.3 4.7 60 16-75 8-69 (430)
38 TIGR00442 hisS histidyl-tRNA s 97.7 6.8E-05 1.5E-09 54.6 4.8 59 16-74 4-64 (397)
39 TIGR00443 hisZ_biosyn_reg ATP 97.6 9.8E-05 2.1E-09 52.6 4.1 52 21-74 3-54 (314)
40 COG0423 GRS1 Glycyl-tRNA synth 97.4 0.00019 4.2E-09 55.4 4.4 57 16-72 30-88 (558)
41 PRK09537 pylS pyrolysyl-tRNA s 97.4 0.00033 7.3E-09 52.6 4.9 48 23-74 204-253 (417)
42 PLN02734 glycyl-tRNA synthetas 97.3 0.00028 6.1E-09 55.8 3.9 57 16-72 99-156 (684)
43 PRK14894 glycyl-tRNA synthetas 97.0 0.0008 1.7E-08 52.0 3.7 57 16-72 30-88 (539)
44 PLN02530 histidine-tRNA ligase 96.9 0.0013 2.9E-08 49.7 4.4 57 16-74 74-131 (487)
45 cd00768 class_II_aaRS-like_cor 96.6 0.0037 8E-08 40.7 4.0 38 29-66 2-39 (211)
46 PRK12420 histidyl-tRNA synthet 96.5 0.0048 1E-07 45.7 4.7 59 16-74 8-67 (423)
47 KOG2324|consensus 96.1 0.017 3.6E-07 43.6 5.4 62 13-74 39-100 (457)
48 PF13393 tRNA-synt_His: Histid 95.7 0.021 4.5E-07 40.2 4.4 47 17-63 1-47 (311)
49 TIGR02367 PylS pyrrolysyl-tRNA 95.5 0.027 5.9E-07 43.0 4.6 45 30-74 243-289 (453)
50 PRK12292 hisZ ATP phosphoribos 95.4 0.025 5.5E-07 41.5 4.2 57 16-74 7-64 (391)
51 PRK12293 hisZ ATP phosphoribos 94.4 0.067 1.5E-06 38.0 4.0 44 16-59 9-52 (281)
52 KOG2298|consensus 93.0 0.099 2.1E-06 40.7 2.9 57 16-72 36-93 (599)
53 cd00775 LysRS_core Lys_tRNA sy 92.7 0.19 4.2E-06 36.4 4.0 33 25-57 7-39 (329)
54 COG0124 HisS Histidyl-tRNA syn 92.7 0.29 6.2E-06 37.2 5.0 59 16-74 8-68 (429)
55 PF00152 tRNA-synt_2: tRNA syn 92.5 0.19 4E-06 36.1 3.6 33 25-57 21-53 (335)
56 PRK09350 poxB regulator PoxA; 92.3 0.23 4.9E-06 35.7 3.9 33 25-57 4-36 (306)
57 PRK12421 ATP phosphoribosyltra 92.1 0.39 8.4E-06 35.6 5.0 56 17-74 12-68 (392)
58 cd00777 AspRS_core Asp tRNA sy 91.8 0.22 4.8E-06 35.4 3.3 32 27-58 2-33 (280)
59 PLN02221 asparaginyl-tRNA synt 91.4 0.25 5.5E-06 38.7 3.5 35 24-58 169-203 (572)
60 cd00669 Asp_Lys_Asn_RS_core As 91.2 0.27 5.9E-06 34.8 3.3 31 27-57 2-32 (269)
61 PLN02532 asparagine-tRNA synth 91.1 0.27 5.8E-06 39.0 3.4 35 24-58 233-267 (633)
62 TIGR00462 genX lysyl-tRNA synt 90.7 0.39 8.3E-06 34.5 3.7 31 27-57 2-32 (304)
63 COG0017 AsnS Aspartyl/asparagi 90.6 0.38 8.3E-06 36.7 3.7 35 24-58 132-166 (435)
64 PRK06462 asparagine synthetase 90.3 0.43 9.3E-06 34.7 3.7 33 24-56 28-60 (335)
65 PRK02983 lysS lysyl-tRNA synth 90.0 0.32 6.9E-06 40.7 3.1 33 24-56 768-800 (1094)
66 PRK12295 hisZ ATP phosphoribos 89.9 0.51 1.1E-05 34.9 3.8 42 31-74 9-51 (373)
67 PTZ00401 aspartyl-tRNA synthet 89.9 0.5 1.1E-05 36.9 3.9 34 24-57 211-244 (550)
68 TIGR00458 aspS_arch aspartyl-t 89.5 0.53 1.1E-05 35.4 3.7 33 24-56 131-163 (428)
69 PLN02972 Histidyl-tRNA synthet 89.5 0.64 1.4E-05 37.7 4.4 45 17-61 332-376 (763)
70 PLN02603 asparaginyl-tRNA synt 89.1 0.54 1.2E-05 36.8 3.6 34 24-57 224-257 (565)
71 PRK12294 hisZ ATP phosphoribos 89.1 0.63 1.4E-05 33.1 3.7 35 29-63 10-44 (272)
72 TIGR00457 asnS asparaginyl-tRN 89.0 0.53 1.2E-05 35.6 3.5 34 24-57 134-167 (453)
73 cd00776 AsxRS_core Asx tRNA sy 88.9 0.7 1.5E-05 33.3 3.9 35 23-57 21-55 (322)
74 PRK05159 aspC aspartyl-tRNA sy 88.8 0.65 1.4E-05 34.9 3.8 32 24-55 134-165 (437)
75 PLN02850 aspartate-tRNA ligase 88.7 0.64 1.4E-05 36.0 3.8 33 24-56 223-255 (530)
76 PRK00476 aspS aspartyl-tRNA sy 88.5 0.6 1.3E-05 36.6 3.5 33 24-56 139-171 (588)
77 TIGR00459 aspS_bact aspartyl-t 88.5 0.61 1.3E-05 36.7 3.6 33 24-56 136-168 (583)
78 PF13590 DUF4136: Domain of un 88.5 1.2 2.6E-05 27.7 4.4 49 6-54 7-63 (151)
79 KOG0555|consensus 88.3 0.26 5.7E-06 37.8 1.4 39 27-65 244-282 (545)
80 PTZ00417 lysine-tRNA ligase; P 88.2 0.66 1.4E-05 36.5 3.6 33 24-56 251-283 (585)
81 TIGR00499 lysS_bact lysyl-tRNA 88.1 0.72 1.6E-05 35.4 3.7 33 24-56 170-202 (496)
82 PRK03932 asnC asparaginyl-tRNA 87.9 0.79 1.7E-05 34.6 3.8 33 24-56 131-163 (450)
83 PTZ00425 asparagine-tRNA ligas 87.4 0.74 1.6E-05 36.3 3.4 35 24-58 213-247 (586)
84 PRK12445 lysyl-tRNA synthetase 87.3 0.87 1.9E-05 35.1 3.7 32 24-55 182-213 (505)
85 PRK12820 bifunctional aspartyl 87.0 0.85 1.8E-05 36.7 3.6 34 24-57 154-187 (706)
86 PRK00484 lysS lysyl-tRNA synth 86.3 1.1 2.3E-05 34.4 3.7 33 24-56 170-202 (491)
87 PLN02502 lysyl-tRNA synthetase 86.1 1.1 2.4E-05 35.0 3.7 33 24-56 227-259 (553)
88 PTZ00385 lysyl-tRNA synthetase 85.0 1.3 2.8E-05 35.4 3.7 32 24-55 231-262 (659)
89 PRK07080 hypothetical protein; 84.4 1.9 4E-05 31.8 4.1 49 27-75 48-96 (317)
90 PLN02903 aminoacyl-tRNA ligase 83.8 1.3 2.9E-05 35.3 3.3 34 24-57 201-235 (652)
91 KOG4163|consensus 79.9 3.9 8.5E-05 31.8 4.5 46 16-61 88-133 (551)
92 cd00496 PheRS_alpha_core Pheny 74.6 6.4 0.00014 26.7 4.0 33 31-63 5-38 (218)
93 PF12401 DUF3662: Protein of u 73.5 3.1 6.7E-05 26.0 2.1 32 22-53 68-99 (116)
94 KOG1885|consensus 73.1 4.4 9.5E-05 31.8 3.2 28 26-53 225-252 (560)
95 KOG0556|consensus 71.7 4.4 9.5E-05 31.4 2.9 32 27-58 229-260 (533)
96 COG0173 AspS Aspartyl-tRNA syn 70.1 5.9 0.00013 31.4 3.3 32 25-56 140-171 (585)
97 PF06491 Disulph_isomer: Disul 66.9 5.8 0.00012 26.0 2.3 30 30-59 3-32 (136)
98 KOG0554|consensus 62.5 11 0.00024 28.9 3.4 35 23-57 129-163 (446)
99 cd00769 PheRS_beta_core Phenyl 61.8 15 0.00031 24.3 3.6 32 31-62 4-35 (198)
100 TIGR02764 spore_ybaN_pdaB poly 58.2 18 0.00038 23.6 3.5 38 16-54 151-191 (191)
101 PF07082 DUF1350: Protein of u 56.8 10 0.00022 27.1 2.3 26 32-57 35-60 (250)
102 COG1190 LysU Lysyl-tRNA synthe 54.1 19 0.00042 28.2 3.5 27 27-53 181-207 (502)
103 TIGR00468 pheS phenylalanyl-tR 54.1 29 0.00063 24.7 4.3 35 29-63 74-109 (294)
104 TIGR02884 spore_pdaA delta-lac 54.1 13 0.00029 25.2 2.5 39 15-54 185-224 (224)
105 PF14162 YozD: YozD-like prote 52.2 16 0.00035 20.3 2.2 18 31-48 12-29 (57)
106 COG2269 Truncated, possibly in 51.9 18 0.00038 26.8 2.9 32 27-58 17-48 (322)
107 PF08513 LisH: LisH; InterPro 48.3 21 0.00046 16.6 2.0 17 31-47 2-18 (27)
108 PRK04172 pheS phenylalanyl-tRN 46.7 27 0.00059 26.6 3.4 32 25-56 231-262 (489)
109 PRK09616 pheT phenylalanyl-tRN 45.4 45 0.00098 25.9 4.4 35 29-63 361-396 (552)
110 COG3705 HisZ ATP phosphoribosy 44.9 27 0.00058 26.4 3.0 38 25-62 16-53 (390)
111 TIGR02873 spore_ylxY probable 43.1 31 0.00067 24.4 3.0 38 16-54 230-267 (268)
112 KOG3043|consensus 36.7 11 0.00023 26.9 -0.2 53 17-70 40-92 (242)
113 KOG1936|consensus 35.0 81 0.0018 24.8 4.3 36 26-61 74-109 (518)
114 PF08373 RAP: RAP domain; Int 34.4 37 0.00079 17.8 1.8 16 38-53 25-40 (58)
115 PHA01753 Holliday junction res 33.9 49 0.0011 21.1 2.6 22 33-54 11-32 (121)
116 PF02180 BH4: Bcl-2 homology r 32.3 66 0.0014 15.4 2.7 18 29-46 6-23 (27)
117 TIGR00046 RNA methyltransferas 32.3 37 0.0008 23.4 1.9 23 38-60 203-226 (240)
118 PF06135 DUF965: Bacterial pro 32.1 46 0.00099 19.9 2.1 21 29-49 17-37 (79)
119 KOG2411|consensus 31.7 57 0.0012 26.1 3.0 32 25-56 177-209 (628)
120 COG4857 Predicted kinase [Gene 31.6 51 0.0011 24.9 2.7 42 6-47 242-283 (408)
121 PRK03094 hypothetical protein; 31.6 45 0.00097 19.8 2.0 20 31-51 9-28 (80)
122 smart00667 LisH Lissencephaly 30.6 61 0.0013 14.5 2.3 19 30-48 4-22 (34)
123 cd00523 archeal_HJR Holliday j 30.4 59 0.0013 20.5 2.5 19 33-51 9-27 (123)
124 PTZ00298 mevalonate kinase; Pr 29.4 96 0.0021 22.2 3.7 40 10-50 277-320 (328)
125 PF01409 tRNA-synt_2d: tRNA sy 28.8 82 0.0018 22.0 3.2 32 31-62 21-53 (247)
126 PF02021 UPF0102: Uncharacteri 28.7 67 0.0015 19.0 2.4 17 33-49 3-19 (93)
127 PF14068 YuiB: Putative membra 28.5 48 0.001 20.7 1.8 16 32-47 86-101 (102)
128 COG0072 PheT Phenylalanyl-tRNA 28.5 1.1E+02 0.0025 24.4 4.3 38 28-65 352-389 (650)
129 PRK00488 pheS phenylalanyl-tRN 27.8 94 0.002 23.1 3.5 29 30-58 111-139 (339)
130 PF05818 TraT: Enterobacterial 27.5 69 0.0015 22.4 2.6 22 31-52 37-58 (215)
131 COG0105 Ndk Nucleoside diphosp 26.6 1.3E+02 0.0027 19.7 3.5 33 18-52 6-38 (135)
132 PRK14677 hypothetical protein; 26.5 77 0.0017 19.5 2.5 17 33-49 7-23 (107)
133 PRK05473 hypothetical protein; 26.5 64 0.0014 19.5 2.0 20 30-49 21-40 (86)
134 PF04452 Methyltrans_RNA: RNA 26.4 62 0.0013 21.9 2.2 38 18-60 178-216 (225)
135 TIGR02366 DHAK_reg probable di 26.1 21 0.00045 22.6 -0.2 42 29-70 5-46 (176)
136 PRK07922 N-acetylglutamate syn 26.0 1.7E+02 0.0036 18.7 4.1 38 28-66 87-124 (169)
137 PF01726 LexA_DNA_bind: LexA D 25.8 75 0.0016 17.7 2.2 21 27-47 6-26 (65)
138 PF03698 UPF0180: Uncharacteri 25.7 66 0.0014 19.0 2.0 15 36-50 13-27 (80)
139 PRK12497 hypothetical protein; 25.7 80 0.0017 19.5 2.5 21 29-49 9-29 (119)
140 PF09498 DUF2388: Protein of u 25.3 64 0.0014 18.9 1.8 14 24-37 40-53 (72)
141 PF06399 GFRP: GTP cyclohydrol 25.2 55 0.0012 19.7 1.6 17 35-51 54-70 (83)
142 PLN02619 nucleoside-diphosphat 25.0 91 0.002 22.2 2.9 43 6-50 80-122 (238)
143 PRK14686 hypothetical protein; 24.8 85 0.0019 19.5 2.5 21 29-49 8-28 (119)
144 PRK07080 hypothetical protein; 24.4 54 0.0012 24.3 1.7 31 29-59 285-315 (317)
145 PRK14678 hypothetical protein; 24.1 87 0.0019 19.6 2.4 20 30-49 10-29 (120)
146 PRK14675 hypothetical protein; 23.9 90 0.002 19.7 2.5 21 29-49 11-31 (125)
147 TIGR00471 pheT_arch phenylalan 23.9 1.5E+02 0.0032 23.1 4.1 34 29-62 364-398 (551)
148 PF04313 HSDR_N: Type I restri 22.9 94 0.002 20.3 2.5 26 29-54 4-30 (194)
149 PRK14689 hypothetical protein; 22.6 99 0.0022 19.7 2.5 22 28-49 10-31 (124)
150 PRK14679 hypothetical protein; 22.5 99 0.0021 19.7 2.5 23 27-49 16-38 (128)
151 PRK14682 hypothetical protein; 22.4 1E+02 0.0022 19.2 2.5 20 30-49 8-27 (117)
152 PRK14688 hypothetical protein; 22.4 1E+02 0.0022 19.4 2.5 20 30-49 10-29 (121)
153 PF03221 HTH_Tnp_Tc5: Tc5 tran 22.4 91 0.002 16.3 2.1 29 27-58 3-31 (66)
154 PF08921 DUF1904: Domain of un 21.9 1.9E+02 0.004 17.9 3.6 32 19-50 60-92 (108)
155 PLN02265 probable phenylalanyl 21.7 1.5E+02 0.0032 23.5 3.7 35 29-63 399-434 (597)
156 cd04883 ACT_AcuB C-terminal AC 21.7 92 0.002 16.5 2.0 16 35-50 56-71 (72)
157 PF11025 GP40: Glycoprotein GP 21.3 18 0.00039 24.0 -1.1 33 12-53 6-38 (165)
158 KOG3139|consensus 21.2 1.4E+02 0.003 20.1 3.1 38 28-65 101-142 (165)
159 PF00334 NDK: Nucleoside dipho 21.1 98 0.0021 19.2 2.3 31 18-50 4-34 (135)
160 PRK14680 hypothetical protein; 21.1 1.1E+02 0.0024 19.6 2.5 20 30-49 10-29 (134)
161 COG4821 Uncharacterized protei 21.0 1.3E+02 0.0028 21.4 3.0 28 24-54 191-218 (243)
162 PRK14676 hypothetical protein; 20.9 1.1E+02 0.0024 19.0 2.5 20 30-49 11-30 (117)
163 cd04416 NDPk_TX NDP kinase dom 20.9 2.2E+02 0.0048 17.7 3.9 30 18-50 4-33 (132)
164 cd04882 ACT_Bt0572_2 C-termina 20.8 85 0.0019 16.1 1.7 26 15-47 39-64 (65)
165 TIGR00472 pheT_bact phenylalan 20.7 2.3E+02 0.005 23.1 4.7 35 29-63 493-527 (798)
166 TIGR00252 conserved hypothetic 20.5 1.2E+02 0.0025 19.0 2.5 19 31-49 11-29 (119)
167 PF13673 Acetyltransf_10: Acet 20.5 1.8E+02 0.0039 16.4 3.8 38 25-63 78-116 (117)
168 PRK10151 ribosomal-protein-L7/ 20.5 1.4E+02 0.003 18.6 2.9 45 22-66 107-152 (179)
169 PF14811 TPD: Protein of unkno 20.2 1.7E+02 0.0036 19.1 3.2 33 24-58 31-72 (139)
170 PRK14684 hypothetical protein; 20.1 1.2E+02 0.0026 19.0 2.5 20 30-49 10-29 (120)
171 PF11455 DUF3018: Protein of 20.1 1.2E+02 0.0026 17.3 2.3 25 37-61 9-35 (65)
No 1
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.5e-26 Score=171.50 Aligned_cols=75 Identities=35% Similarity=0.598 Sum_probs=73.3
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++|++||++|+|+||+||||++|+||+|++||+||++|++.++||+++.||+||+.+++.+|||+|+|+|+||+|
T Consensus 149 ~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v 223 (429)
T COG0172 149 KLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKV 223 (429)
T ss_pred hcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02678 seryl-tRNA synthetase
Probab=99.93 E-value=5.1e-26 Score=169.44 Aligned_cols=75 Identities=60% Similarity=0.988 Sum_probs=73.2
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+||++||++|++++|++||||+|+||+|++||++|++|.+.++||++|.||+|+++++|++|||||+|+|+||+|
T Consensus 149 ~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i 223 (448)
T PLN02678 149 LLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKV 223 (448)
T ss_pred hccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCcee
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.90 E-value=3.5e-24 Score=158.08 Aligned_cols=75 Identities=28% Similarity=0.643 Sum_probs=73.1
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++|++||++|++++|+|||+|+|+|++|++||++|+++.+.++||++|.||.|++.++|++||||++|+++||+|
T Consensus 148 ~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i 222 (418)
T TIGR00414 148 KLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKL 222 (418)
T ss_pred hCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEe
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.90 E-value=3.6e-24 Score=158.31 Aligned_cols=75 Identities=37% Similarity=0.626 Sum_probs=72.9
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++||+||++|++++|+|||+|+|+|++|++||++|+++.+. ++||++|.||.|++.++|++|||+|+|+++||+|
T Consensus 145 ~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i 220 (425)
T PRK05431 145 KLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKI 220 (425)
T ss_pred hcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEe
Confidence 47999999999999999999999999999999999999999 9999999999999999999999999999999975
No 5
>PLN02320 seryl-tRNA synthetase
Probab=99.90 E-value=3.9e-24 Score=161.10 Aligned_cols=75 Identities=36% Similarity=0.587 Sum_probs=72.2
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcc-ccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE-ELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e-~~y~i 75 (75)
+||++||++|++++|++|||+.|.||+|++||++|++|.+.++||++|+||+||++++|++|||+|++++ ++|+|
T Consensus 208 ~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i 283 (502)
T PLN02320 208 ELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI 283 (502)
T ss_pred HcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999999988 88875
No 6
>KOG2509|consensus
Probab=99.89 E-value=8.8e-24 Score=156.49 Aligned_cols=73 Identities=52% Similarity=0.803 Sum_probs=70.5
Q ss_pred CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 74 (75)
Q Consensus 2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~ 74 (75)
+|++|+++|+++||+|+||++|+||+|++||+||+++++.++||++++||+|+|++++++||++|.|++++|+
T Consensus 161 ~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y 233 (455)
T KOG2509|consen 161 LGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYY 233 (455)
T ss_pred cccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEE
Confidence 5788999999999999999999999999999999999999999999999999999999999999999987765
No 7
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.88 E-value=3.3e-23 Score=146.86 Aligned_cols=75 Identities=45% Similarity=0.793 Sum_probs=73.0
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++|++|++++++++|+|+|+|+|+|++|+++|++|+++++.+.||++|.+|.|++.++|++||||+.|+++||+|
T Consensus 27 ~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v 101 (297)
T cd00770 27 KLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKV 101 (297)
T ss_pred HCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEe
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999975
No 8
>PLN02837 threonine-tRNA ligase
Probab=99.85 E-value=8.9e-22 Score=150.62 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=69.2
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+|+|+||++ .+|+|+|+|+|+|++|+++|++|+++.+.++||++|.||.|++.++|++||||++|+|+||++
T Consensus 225 ~l~lf~~~~---~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~ 296 (614)
T PLN02837 225 DLDLFSIQD---DAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQ 296 (614)
T ss_pred HcCCcccCc---CcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccc
Confidence 479999998 499999999999999999999999999999999999999999999999999999999999974
No 9
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.75 E-value=2.4e-18 Score=121.90 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=69.2
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+++++||+++ +|+|+++|+|+|+.++++|++++++.+.++||++|.||.|++.++|++|||++.|+++||++
T Consensus 8 ~~~l~~~~~~---~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 79 (298)
T cd00771 8 ELELFFFFDE---AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF 79 (298)
T ss_pred HcCCcccCCC---CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEe
Confidence 4789999986 89999999999999999999999999999999999999999999999999999999999975
No 10
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.73 E-value=3.6e-18 Score=129.30 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHH-HhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~-~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++||+| +++|+|+|+|+|+|+.|++||++|+++.+ .+.||++|.+|.|++.++|++|||+++|.++||.|
T Consensus 203 ~~glld-----k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V 273 (517)
T PRK00960 203 KLGWVK-----RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYV 273 (517)
T ss_pred HCCCcc-----ccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEe
Confidence 367888 68999999999999999999999999985 56799999999999999999999999999999975
No 11
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.72 E-value=7.1e-18 Score=128.24 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=68.9
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+|+|+||++ .+|+|+++|+|+|+.|+++|++|+++.+.++||++|.||.|.+.++|+.|||+++|+|+||.+
T Consensus 146 ~l~lf~~~~---~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~ 217 (545)
T PRK14799 146 KLDLFSFHE---EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF 217 (545)
T ss_pred HcCCccccc---ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee
Confidence 479999998 689999999999999999999999999999999999999999999999999999999999963
No 12
>PLN02908 threonyl-tRNA synthetase
Probab=99.71 E-value=1.5e-17 Score=128.68 Aligned_cols=71 Identities=13% Similarity=0.230 Sum_probs=66.9
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++++++|++. ++|+++|+|.|++|+++|++|+++.+.++||++|.||.|++.++|++||||++|+|+||.+
T Consensus 300 ~~~lf~~~~~----~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~ 370 (686)
T PLN02908 300 KQELFFFHEL----SPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF 370 (686)
T ss_pred hcCCeeecCC----CCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE
Confidence 3689999984 5889999999999999999999999999999999999999999999999999999999973
No 13
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.68 E-value=5.3e-17 Score=113.26 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHH-HHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM-QEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~-~~sG~~~~~~e~~y~i 75 (75)
++|++|++. .+|+|+|+|.|++++++|++++++.+.+.||++|.||.|++.++| ++|||+++|+++||++
T Consensus 12 ~~~~~d~~~-----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~ 82 (261)
T cd00778 12 KAELIDYGP-----VKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWV 82 (261)
T ss_pred HhCCcccCC-----CCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEE
Confidence 468888863 458999999999999999999999999999999999999999998 5799999999999974
No 14
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.67 E-value=5.6e-17 Score=122.74 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=64.2
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHh-CCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIE-KGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~-~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++||+| |++|+|||+|+|.|+.|++||++|++|.+.+ .||++|.+|.|++.+++++|||+++|.++||.|
T Consensus 203 k~glid-----k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~V 273 (520)
T TIGR00415 203 KLGWVK-----KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYC 273 (520)
T ss_pred HCCCee-----EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEE
Confidence 357775 6899999999999999999999999998864 599999999999999999999999999999964
No 15
>KOG1637|consensus
Probab=99.65 E-value=6.8e-17 Score=121.35 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=59.8
Q ss_pred ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
-.||++||.|.|+++.++|+.|++.+.++|||++|+||.|-++++|+.||||++|+||||++
T Consensus 180 lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~ 241 (560)
T KOG1637|consen 180 LSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKF 241 (560)
T ss_pred CCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceee
Confidence 36899999999999999999999999999999999999999999999999999999999975
No 16
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.62 E-value=6.1e-16 Score=118.97 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++|++|++.+ +++|.++|+|+|++|.++|++|+++.+.+.||++|.||.|++.++|+.+||+++|+|+||.+
T Consensus 205 ~~~L~d~~~~---s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v 276 (613)
T PRK03991 205 EKELADYEPA---SDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRV 276 (613)
T ss_pred HCCCcccccc---cCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEe
Confidence 4789999884 78889999999999999999999999999999999999999999999999999999999975
No 17
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.61 E-value=1.2e-15 Score=114.98 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=68.8
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++|++|++++ +|+|++.|+|+|+.+.++|++++++.+.++||++|.||.+.+.++|+.|||++.|+++||++
T Consensus 178 ~~~l~~~~~~---~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~ 249 (563)
T TIGR00418 178 ELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPF 249 (563)
T ss_pred hCCCcccCcc---cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhccee
Confidence 4799999975 89999999999999999999999999999999999999999999999999999999999974
No 18
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=1.5e-15 Score=114.83 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=68.5
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+++++|++. .+|+|+++|+|+|+.+.++|++++++...++||++|.||.+.+.++|++|||++.|+++||++
T Consensus 184 ~~~l~~~~~---~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~ 255 (575)
T PRK12305 184 ELDLFSFPD---EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPP 255 (575)
T ss_pred hcCcccccc---ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccc
Confidence 368999987 689999999999999999999999999999999999999999999999999999999999974
No 19
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.3e-15 Score=116.84 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=67.4
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 74 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~ 74 (75)
+|++++++. ..|+|+++|+++|+.+.+.|++|+++.+.+.||.+|.||.|++.++|+.||||++|+|+||.
T Consensus 198 el~LF~~~~---~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~ 268 (589)
T COG0441 198 ELDLFSFSP---EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFL 268 (589)
T ss_pred hhcceeecc---ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhcccccee
Confidence 368888885 48999999999999999999999999999999999999999999999999999999999996
No 20
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.55 E-value=1e-14 Score=101.48 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=60.7
Q ss_pred hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
.+++|++.|+|.|+.+.++|++++++.+.+.||++|.||.+.+.++|++|||++.|+++||++
T Consensus 18 ~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~ 80 (255)
T cd00779 18 QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRL 80 (255)
T ss_pred cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEE
Confidence 478999999999999999999999999999999999999999999999999999999999974
No 21
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.51 E-value=2.2e-14 Score=110.02 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 74 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~ 74 (75)
+|+++||++ .++|+++|+|+|+.+.+.|++|+++.+.++||++|.||.+++.++|++|||+++|+++||.
T Consensus 253 ~~~l~~~~~----~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~ 322 (639)
T PRK12444 253 ELELFMFSE----EAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYF 322 (639)
T ss_pred HcCCccccc----ccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCe
Confidence 368999987 3778999999999999999999999999999999999999999999999999999999994
No 22
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.49 E-value=3.3e-14 Score=106.22 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=56.9
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHh--CCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIE--KGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 74 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~--~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~ 74 (75)
+|||.+.|.|+.|.+.|++|+++.+.+ .||.+|.||.|++.++|+.||||++|.|+||+
T Consensus 28 ~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~ 88 (456)
T PRK04173 28 AGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVE 88 (456)
T ss_pred hcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeE
Confidence 678999999999999999999999987 79999999999999999999999999999996
No 23
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.48 E-value=6.4e-14 Score=103.91 Aligned_cols=62 Identities=8% Similarity=0.120 Sum_probs=60.3
Q ss_pred ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
.++|+++|+|.|+++.++|++++++.+.+.||++|.||.|.+.++|+.||||+.|+++||++
T Consensus 35 ~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~ 96 (439)
T PRK12325 35 QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI 96 (439)
T ss_pred cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEE
Confidence 58999999999999999999999999999999999999999999999999999999999974
No 24
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.40 E-value=4.8e-13 Score=102.10 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=66.1
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
++++++|+..+ +|+++|+|+|+.+.++|++++++.+.++||++|.||.+.+.++|..|||++.++++||++
T Consensus 249 ~~~~~~~~~~~----~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~ 319 (638)
T PRK00413 249 ELDLFHFQEEA----PGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT 319 (638)
T ss_pred hcCEEEecCCC----CcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee
Confidence 36788888853 889999999999999999999999999999999999999999999999999999999974
No 25
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.39 E-value=6.1e-13 Score=99.69 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCccccccC
Q psy10664 1 MIDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYKM 75 (75)
Q Consensus 1 ~l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~i 75 (75)
+.+++|.+. + +|+++|+|.|+.+.++|++++.+.+.+.||++|.+|.+++.++|++ +||++.|+++||.|
T Consensus 24 ~~~l~d~~~---v--~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v 94 (477)
T PRK08661 24 KAELADYSP---V--KGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWV 94 (477)
T ss_pred HccCcccCC---C--CceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEE
Confidence 357888877 2 5899999999999999999999999999999999999999999964 99999999999974
No 26
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.38 E-value=7.8e-13 Score=100.60 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=60.1
Q ss_pred ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+++|+|.|+|.|+++.++|++++++.+.+.||++|.+|.+.+.++|++||||+.|.++||++
T Consensus 35 ~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~ 96 (565)
T PRK09194 35 LASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRL 96 (565)
T ss_pred cCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEE
Confidence 68999999999999999999999999999999999999999999999999999999999974
No 27
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.35 E-value=2.4e-12 Score=90.28 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=56.6
Q ss_pred cCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCc-ccccc
Q psy10664 15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFD-EELYK 74 (75)
Q Consensus 15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~-e~~y~ 74 (75)
++|++.|+|.|+.+.+.|++++.+.+.+.||++|.||.+++.++|++||+++++. ++||.
T Consensus 21 ~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~ 81 (264)
T cd00772 21 GRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAV 81 (264)
T ss_pred CCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceE
Confidence 8899999999999999999999999999999999999999999999999999954 67775
No 28
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.31 E-value=3.9e-12 Score=97.31 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=60.7
Q ss_pred hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
.+++|+|.|+|.|+++.++|++++++++.+.||++|.+|.+.+.++|+.||||+.|.++||++
T Consensus 34 ~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~ 96 (568)
T TIGR00409 34 RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRL 96 (568)
T ss_pred ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEE
Confidence 468999999999999999999999999999999999999999999999999999999999974
No 29
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.22 E-value=1.9e-11 Score=91.65 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCcccccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCCCCccccccC
Q psy10664 2 IDGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYKM 75 (75)
Q Consensus 2 l~~~d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~~~~e~~y~i 75 (75)
.|++|... .+|+++|+|.|+.+.+.|++++.+.+.+.||++|.+|.+++.++|+++ +|++.|+++||.|
T Consensus 19 ~~li~~~~-----~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v 88 (472)
T TIGR00408 19 AEIIDYYP-----VKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWI 88 (472)
T ss_pred cCCccccC-----CCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEE
Confidence 57777633 477899999999999999999999999999999999999999999986 5999999999975
No 30
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.09 E-value=3.2e-11 Score=78.93 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 28 LQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 28 L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
|+++|++++++.+. +.||++|.+|.|+++++|++|||++.|.++||.+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~ 49 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKV 49 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEE
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeee
Confidence 68999999999999 9999999999999999999999999999999974
No 31
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.99 E-value=6.9e-10 Score=74.78 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
|+.+.++|++++.+...++||++|.||.|.+.++|+++||++.++++||++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~ 51 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTF 51 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCee
Confidence 689999999999999999999999999999999999999999999999974
No 32
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.7e-07 Score=70.33 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=59.7
Q ss_pred ccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 14 ~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
..+|.|.|+|-|.++.+.+++.+++++.+.|-++|.-|.+...++|+.||||..|.+.||.|
T Consensus 35 ~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v 96 (500)
T COG0442 35 PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRV 96 (500)
T ss_pred ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEE
Confidence 67899999999999999999999999999999999999999999999999999999999864
No 33
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=98.19 E-value=3.1e-06 Score=65.24 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=54.1
Q ss_pred cCcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCccccc
Q psy10664 15 GGRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 73 (75)
Q Consensus 15 G~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y 73 (75)
-+|+|=|-|-|+.|.+.+++.+++... +.|+.+|.+|.|+++++|+.|||+.+|.|-|-
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv 85 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMV 85 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCcee
Confidence 368999999999999999999999774 78999999999999999999999999988663
No 34
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.08 E-value=6.1e-06 Score=57.48 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=47.3
Q ss_pred cCcceeecchHHHHHHHHHHHHHHHHHhCC--CeeeccCccchHHHHHHc-CCCCC
Q psy10664 15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKG--YTPLYTPFFMRKEVMQEV-AQLAQ 67 (75)
Q Consensus 15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~G--y~~v~~P~i~~~~~~~~s-G~~~~ 67 (75)
-+|++.|.|.|+.+.+.|++++++...+.| |.+|.||.|.+.+++... |+..+
T Consensus 21 ~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d~ 76 (254)
T cd00774 21 VAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVES 76 (254)
T ss_pred hhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccCC
Confidence 478999999999999999999999999885 999999999999998864 66543
No 35
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.05 E-value=6.6e-06 Score=60.04 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=53.0
Q ss_pred cCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCC-CCcccccc
Q psy10664 15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLA-QFDEELYK 74 (75)
Q Consensus 15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~-~~~e~~y~ 74 (75)
-.|+.-|.|.++...+.+++.+++...++||++|.||.+-..++|..+ |++. .++++||+
T Consensus 7 p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~ 68 (412)
T PRK00037 7 PRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYT 68 (412)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEE
Confidence 467889999999999999999999999999999999999999999764 7764 35677886
No 36
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.91 E-value=1.6e-05 Score=55.12 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 26 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 26 a~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
+.+.+.|++.+.+...++||++|.||.+...+++.+++ .+..+++||++
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~ 50 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRF 50 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEE
Confidence 46788999999999999999999999999999999887 66777888863
No 37
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.80 E-value=3.5e-05 Score=57.27 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=52.4
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-C-CCCCCccccccC
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-A-QLAQFDEELYKM 75 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G-~~~~~~e~~y~i 75 (75)
.|+-=+.|+.+...+.+++-+++...++||++|.||.+=..+++..+ | +++.++++||++
T Consensus 8 ~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~ 69 (430)
T CHL00201 8 RGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRF 69 (430)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEE
Confidence 34556778999999999999999999999999999999999999875 5 777788899863
No 38
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.70 E-value=6.8e-05 Score=54.58 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=50.5
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC-C-CCCCcccccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA-Q-LAQFDEELYK 74 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG-~-~~~~~e~~y~ 74 (75)
.|+.-|.|.++.+.+.+++.+.+...++||++|.||.+-..+++...+ . .+..+++||+
T Consensus 4 ~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~ 64 (397)
T TIGR00442 4 RGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYT 64 (397)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEE
Confidence 457789999999999999999999999999999999999999998764 2 2235567775
No 39
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.57 E-value=9.8e-05 Score=52.64 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=46.7
Q ss_pred ecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664 21 LKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 74 (75)
Q Consensus 21 l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~ 74 (75)
+.|+.+.+.+.+++.+++...++||++|.||.+-..+++...++ ..+++||+
T Consensus 3 ~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~ 54 (314)
T TIGR00443 3 LLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFK 54 (314)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEE
Confidence 46789999999999999999999999999999999999998877 36777886
No 40
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00019 Score=55.39 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=51.4
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHH-h-CCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWI-E-KGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 72 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~-~-~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~ 72 (75)
+|||=+-|-|+.|.+.|++-+++... + .+.-+|-||.|+..++|+.|||..+|.|-|
T Consensus 30 ~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDpl 88 (558)
T COG0423 30 AGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPL 88 (558)
T ss_pred ccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccccccce
Confidence 57888899999999999999998765 4 689999999999999999999999998854
No 41
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=97.37 E-value=0.00033 Score=52.64 Aligned_cols=48 Identities=8% Similarity=0.350 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC--CCcccccc
Q psy10664 23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA--QFDEELYK 74 (75)
Q Consensus 23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~--~~~e~~y~ 74 (75)
+.+..|++++.+++.+ +||++|.||.|++.+.++.+|+.+ .+.++||+
T Consensus 204 ~~~s~Le~aIR~~f~~----~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~ 253 (417)
T PRK09537 204 DYLGKLERDITKFFVD----RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR 253 (417)
T ss_pred CHHHHHHHHHHHHHHH----CCCEEEECCeeecHHHHHHhCCCCcccchhhhee
Confidence 4566777777766665 899999999999999999999874 35556664
No 42
>PLN02734 glycyl-tRNA synthetase
Probab=97.30 E-value=0.00028 Score=55.82 Aligned_cols=57 Identities=11% Similarity=0.264 Sum_probs=51.6
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHH-hCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 72 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~ 72 (75)
+|+|=+-|-|+.|.+.+++++++... +.+.-+|-+|.|+...+|+.|||..+|-|-|
T Consensus 99 aG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~m 156 (684)
T PLN02734 99 AGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLM 156 (684)
T ss_pred ccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCccccccee
Confidence 57888999999999999999999654 6688899999999999999999999998855
No 43
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=97.00 E-value=0.0008 Score=52.00 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHH--hCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWI--EKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 72 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~--~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~ 72 (75)
+|+|=+-|-|+.|.+.|++.+.+... +.+..++-+|.|+++.+|+.|||..+|.|-|
T Consensus 30 ~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~Dpm 88 (539)
T PRK14894 30 QGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPL 88 (539)
T ss_pred ccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCce
Confidence 56788889999999999999998764 4577899999999999999999999998754
No 44
>PLN02530 histidine-tRNA ligase
Probab=96.94 E-value=0.0013 Score=49.67 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=49.0
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCCCCcccccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYK 74 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~~~~e~~y~ 74 (75)
.|+.-|.|+.+.+.+.|++.+++....+||++|.||.+-..+++... |. .-+++||+
T Consensus 74 ~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~ 131 (487)
T PLN02530 74 KGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYN 131 (487)
T ss_pred CCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEE
Confidence 45667889999999999999999999999999999999999999864 43 35567875
No 45
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.59 E-value=0.0037 Score=40.65 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA 66 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~ 66 (75)
...+++.+++.+.++||++|.||.+++.+.++..|+.+
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~ 39 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP 39 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH
Confidence 46788899999999999999999999999998887653
No 46
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.54 E-value=0.0048 Score=45.65 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=49.7
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK 74 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~ 74 (75)
.|+.=|.|.-+.+.+.+++-+++..+++||.+|.||.+-..+++.. +|.-+.-+++||+
T Consensus 8 ~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~ 67 (423)
T PRK12420 8 KGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYT 67 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEE
Confidence 4566789999999999999999999999999999999999999975 3544445566775
No 47
>KOG2324|consensus
Probab=96.09 E-value=0.017 Score=43.56 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=56.2
Q ss_pred hccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcccccc
Q psy10664 13 VAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYK 74 (75)
Q Consensus 13 ~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~ 74 (75)
-+-+|+|=|+|-|.+..+.+.+-.......-|=..|.-|.+-..++|++||-|+.--..||+
T Consensus 39 ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~r 100 (457)
T KOG2324|consen 39 PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFR 100 (457)
T ss_pred cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheE
Confidence 36789999999999999999999999999999999999999999999999999876555654
No 48
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=95.70 E-value=0.021 Score=40.16 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=34.6
Q ss_pred cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC
Q psy10664 17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63 (75)
Q Consensus 17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG 63 (75)
|+.-|.|+=+...+.+++=+++...++||++|.||.+-..+++...+
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~ 47 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKS 47 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcc
Confidence 45567788888899999999999999999999999999999988655
No 49
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=95.50 E-value=0.027 Score=42.98 Aligned_cols=45 Identities=9% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCC--Ccccccc
Q psy10664 30 VGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQ--FDEELYK 74 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~--~~e~~y~ 74 (75)
..|.+-+++.+...||++|.||.|.+.+.++..++.+. ..++||+
T Consensus 243 ~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk 289 (453)
T TIGR02367 243 GKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR 289 (453)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE
Confidence 45677777778889999999999999999888776533 3445654
No 50
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.44 E-value=0.025 Score=41.54 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=46.0
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc-CCCCCCcccccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV-AQLAQFDEELYK 74 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s-G~~~~~~e~~y~ 74 (75)
.|+-=+.|+-+...+.+++-+++...++||++|.||.+-..+++... |.. -+++||+
T Consensus 7 ~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~--~~~~~~~ 64 (391)
T PRK12292 7 EGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI--LDLRTFK 64 (391)
T ss_pred CcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCcc--chhhhEE
Confidence 34556678899999999999999999999999999999999998653 432 3456765
No 51
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=94.42 E-value=0.067 Score=38.00 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=38.6
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHH
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 59 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~ 59 (75)
.|+-=+.|+=+.+.+.+++-+.+...++||++|.||.+=..++.
T Consensus 9 ~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~ 52 (281)
T PRK12293 9 QGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQ 52 (281)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhh
Confidence 34556678999999999999999999999999999999877776
No 52
>KOG2298|consensus
Probab=93.00 E-value=0.099 Score=40.69 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=51.1
Q ss_pred CcceeecchHHHHHHHHHHHHHHHH-HhCCCeeeccCccchHHHHHHcCCCCCCcccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLAQFDEEL 72 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~-~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~ 72 (75)
+|.|=+-|.|--|...+++.+++.- .+.+--+|-.|.+...++++.|||-++|.|-|
T Consensus 36 sGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~m 93 (599)
T KOG2298|consen 36 SGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWM 93 (599)
T ss_pred ccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHH
Confidence 5678888999999999999999854 57899999999999999999999999998865
No 53
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=92.70 E-value=0.19 Score=36.37 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
-.+++.++.+.+++++.++||.+|.||.|....
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~ 39 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA 39 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC
Confidence 457888999999999999999999999998664
No 54
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.69 E-value=0.29 Score=37.17 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCC-cccccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQF-DEELYK 74 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~-~e~~y~ 74 (75)
.|+.=|.|+=+.+++.+++.+++..+++||.+|.||.+=..+++.+ +|--.+- +.+||.
T Consensus 8 rG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~ 68 (429)
T COG0124 8 RGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYT 68 (429)
T ss_pred CCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEE
Confidence 3455677888899999999999999999999999999999999875 5654432 456764
No 55
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=92.47 E-value=0.19 Score=36.08 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
-.+++.++.+.+++++.++||.+|.||.|....
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~ 53 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSST 53 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSS
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeeccc
Confidence 567889999999999999999999999998764
No 56
>PRK09350 poxB regulator PoxA; Provisional
Probab=92.34 E-value=0.23 Score=35.69 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
-.+....+++.+++.+.++||.+|.||.+....
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~ 36 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQAT 36 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeccc
Confidence 356788899999999999999999999997644
No 57
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.08 E-value=0.39 Score=35.57 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=43.9
Q ss_pred cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664 17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK 74 (75)
Q Consensus 17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~ 74 (75)
|+-=+.|+=+...+.+++-+++...++||++|.||.+=..+++.. +|.. -+++||+
T Consensus 12 G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~--~~~~~y~ 68 (392)
T PRK12421 12 GVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQD--LKLQTFK 68 (392)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCcc--chhceEE
Confidence 444566778889999999999999999999999999999998865 3543 2234654
No 58
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=91.77 E-value=0.22 Score=35.39 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
+++.++++.+++++.++||.+|.||.|.....
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~ 33 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP 33 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC
Confidence 46778899999999999999999999986544
No 59
>PLN02221 asparaginyl-tRNA synthetase
Probab=91.36 E-value=0.25 Score=38.70 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
...+++.++.+.+++++.++||.+|.||.|+..+.
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~ 203 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccC
Confidence 35678999999999999999999999999988764
No 60
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=91.22 E-value=0.27 Score=34.76 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
+++.++.+.+++++.++||++|.||.+....
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~ 32 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT 32 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC
Confidence 4678899999999999999999999998653
No 61
>PLN02532 asparagine-tRNA synthetase
Probab=91.09 E-value=0.27 Score=39.04 Aligned_cols=35 Identities=9% Similarity=0.241 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
...+++.++.+.+++++.++||++|.||.|+..+.
T Consensus 233 ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~ 267 (633)
T PLN02532 233 SVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDA 267 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC
Confidence 35678899999999999999999999999987753
No 62
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=90.70 E-value=0.39 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
+++..+++.+++.+.++||.+|.||.+....
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~ 32 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAP 32 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCC
Confidence 4678889999999999999999999999764
No 63
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=90.58 E-value=0.38 Score=36.68 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
...+++.++...+++++.++||++|.||.|+-.+.
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~ 166 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT 166 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC
Confidence 35678999999999999999999999999987654
No 64
>PRK06462 asparagine synthetase A; Reviewed
Probab=90.34 E-value=0.43 Score=34.70 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++.++.+.+++++.++||.+|.||.|...
T Consensus 28 ~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~ 60 (335)
T PRK06462 28 KVLKVQSSILRYTREFLDGRGFVEVLPPIISPS 60 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecC
Confidence 356788999999999999999999999999865
No 65
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=90.03 E-value=0.32 Score=40.67 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++.++++.+++++.++||.+|-||.|...
T Consensus 768 ~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~ 800 (1094)
T PRK02983 768 DLLRARSAVVRAVRETLVARGFLEVETPILQQV 800 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCEeecc
Confidence 456788999999999999999999999999743
No 66
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=89.90 E-value=0.51 Score=34.89 Aligned_cols=42 Identities=10% Similarity=0.190 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCeeeccCccchHHHHHH-cCCCCCCcccccc
Q psy10664 31 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQE-VAQLAQFDEELYK 74 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~-sG~~~~~~e~~y~ 74 (75)
++.+-+++...++||++|.||.+-..+++.. +|.- -+++||+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~--~~~~~~~ 51 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED--IRRRIFV 51 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch--hhcceEE
Confidence 5666667777899999999999999998753 4533 2345665
No 67
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=89.89 E-value=0.5 Score=36.87 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
.-.+++.++.+.+++++.++||.+|-||.|+...
T Consensus 211 ~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~ 244 (550)
T PTZ00401 211 AIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP 244 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC
Confidence 4567888999999999999999999999998755
No 68
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=89.55 E-value=0.53 Score=35.36 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++.++++.+++++.++||.+|-||.|...
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~ 163 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVAS 163 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecC
Confidence 456788999999999999999999999999843
No 69
>PLN02972 Histidyl-tRNA synthetase
Probab=89.54 E-value=0.64 Score=37.73 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=37.8
Q ss_pred cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664 17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61 (75)
Q Consensus 17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~ 61 (75)
|+.=|.|+=+.+.+.+++-+.+..+.+||++|.||.+-..+++.+
T Consensus 332 GtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~ 376 (763)
T PLN02972 332 GTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMG 376 (763)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhc
Confidence 344455666788999999999999999999999999999998865
No 70
>PLN02603 asparaginyl-tRNA synthetase
Probab=89.12 E-value=0.54 Score=36.83 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
.-.+++.++.+-+++++.++||.+|.||.|...+
T Consensus 224 ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~ 257 (565)
T PLN02603 224 AVARVRNALAYATHKFFQENGFVWVSSPIITASD 257 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecccC
Confidence 4568899999999999999999999999998764
No 71
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=89.11 E-value=0.63 Score=33.13 Aligned_cols=35 Identities=9% Similarity=-0.102 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG 63 (75)
.+.+++-+++...++||++|.||.+=..+++..++
T Consensus 10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~ 44 (272)
T PRK12294 10 LKESETAFLKYFNKADYELVDFSVIEKLDWKQLNH 44 (272)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccc
Confidence 45677778888899999999999998888875444
No 72
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=88.99 E-value=0.53 Score=35.65 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
.-.+++.++++.+++++.++||.+|.||.|....
T Consensus 134 ~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~ 167 (453)
T TIGR00457 134 AVMRVRNALSQAIHRYFQENGFTWVSPPILTSND 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC
Confidence 3468899999999999999999999999998755
No 73
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=88.90 E-value=0.7 Score=33.34 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
..-.+++.++.+-+++...++||.+|.||.|....
T Consensus 21 ~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~ 55 (322)
T cd00776 21 QAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTD 55 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCC
Confidence 34567889999999999999999999999998743
No 74
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=88.81 E-value=0.65 Score=34.89 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccch
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMR 55 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~ 55 (75)
.-.+++.++++.+++++.++||.+|-||.|..
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~ 165 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVA 165 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccc
Confidence 45678889999999999999999999999964
No 75
>PLN02850 aspartate-tRNA ligase
Probab=88.69 E-value=0.64 Score=36.04 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
...+++.++.+.+++++.++||.+|-||.|...
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~ 255 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAG 255 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCCccccC
Confidence 456788899999999999999999999999654
No 76
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=88.52 E-value=0.6 Score=36.61 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+.+.+++++.++||.+|-||.|.+.
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s 171 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKS 171 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecC
Confidence 345678899999999999999999999999865
No 77
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=88.51 E-value=0.61 Score=36.67 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+.+.+++++.++||.+|-||.|.+.
T Consensus 136 ~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s 168 (583)
T TIGR00459 136 QRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKS 168 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeccC
Confidence 345788999999999999999999999999863
No 78
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=88.47 E-value=1.2 Score=27.73 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=35.3
Q ss_pred cccccchhccCcceeecch-------HHHHHHHHHHHHHHHHHhCCCeee-ccCccc
Q psy10664 6 DSEAGAIVAGGRGYFLKGP-------AVCLQVGLVQYALSKWIEKGYTPL-YTPFFM 54 (75)
Q Consensus 6 d~~~~~k~~G~~~~~l~~~-------ga~L~~aL~~f~~~~~~~~Gy~~v-~~P~i~ 54 (75)
|.++.+..++-+.|.|.+. .-.....+.+-+.+.|.++||+++ ..|+++
T Consensus 7 dyd~~~df~~ykTy~~~~~~~~~~~~~~~~~~~i~~~v~~~L~~~G~~~~~~~aDl~ 63 (151)
T PF13590_consen 7 DYDPSADFSQYKTYAFVPSSSDPAQSNPLDDQRIQDAVEQELAAKGYRRVPENADLL 63 (151)
T ss_pred cCCCCcCCCCCCeEEEecCCcCccccCcHHHHHHHHHHHHHHHHCCCeecccCCCEE
Confidence 4555556666667777666 234556778888889999999999 777765
No 79
>KOG0555|consensus
Probab=88.30 E-value=0.26 Score=37.81 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCC
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~ 65 (75)
+.+-++.+-++|....+|||+|.||.||..++=-+|..+
T Consensus 244 K~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLF 282 (545)
T KOG0555|consen 244 KARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLF 282 (545)
T ss_pred HHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEE
Confidence 456678888999999999999999999999887666644
No 80
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=88.25 E-value=0.66 Score=36.48 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+++.+++++.++||.+|-||.|...
T Consensus 251 ~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~ 283 (585)
T PTZ00417 251 STFITRTKIINYLRNFLNDRGFIEVETPTMNLV 283 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHCCeEEEeCCeeecc
Confidence 355688899999999999999999999999764
No 81
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=88.13 E-value=0.72 Score=35.40 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+++.+++++.++||.+|-||.|...
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~ 202 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVI 202 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecC
Confidence 456788899999999999999999999999754
No 82
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=87.94 E-value=0.79 Score=34.64 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+.+.+++++.++||.+|-||.|...
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~ 163 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITAS 163 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceecc
Confidence 457888999999999999999999999999865
No 83
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=87.37 E-value=0.74 Score=36.29 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
.-.+++.++..-+++++.++||.+|.||.|..++.
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~ 247 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC 247 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC
Confidence 35678899999999999999999999999987663
No 84
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=87.29 E-value=0.87 Score=35.09 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccch
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMR 55 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~ 55 (75)
.-.+++..+++.+++++.++||.+|-||.|..
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~ 213 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQV 213 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEe
Confidence 45678899999999999999999999999964
No 85
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=87.00 E-value=0.85 Score=36.69 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
.-.+++..+++.+++++.++||.+|-||.|.+..
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~ 187 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKST 187 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC
Confidence 4567788999999999999999999999998643
No 86
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=86.29 E-value=1.1 Score=34.38 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+++.+++++.++||.+|-||.|...
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~ 202 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPI 202 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceecc
Confidence 566788999999999999999999999999743
No 87
>PLN02502 lysyl-tRNA synthetase
Probab=86.07 E-value=1.1 Score=34.99 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
.-.+++..+++.+++++.++||.+|-||.|...
T Consensus 227 ~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~ 259 (553)
T PLN02502 227 DIFRTRAKIISYIRRFLDDRGFLEVETPMLNMI 259 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecc
Confidence 456788899999999999999999999999753
No 88
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=84.96 E-value=1.3 Score=35.44 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccch
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFMR 55 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~ 55 (75)
.-.+++.++++.+++++.++||.+|-||.|..
T Consensus 231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~ 262 (659)
T PTZ00385 231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHT 262 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeec
Confidence 35678889999999999999999999999954
No 89
>PRK07080 hypothetical protein; Validated
Probab=84.40 E-value=1.9 Score=31.79 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCccccccC
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e~~y~i 75 (75)
.+-.+|...+...-...|++++.-|-++..+.+++||++..|=+.++.|
T Consensus 48 ~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V 96 (317)
T PRK07080 48 DVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTV 96 (317)
T ss_pred HHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceee
Confidence 3444444444433335569999999999999999999999887766643
No 90
>PLN02903 aminoacyl-tRNA ligase
Probab=83.81 E-value=1.3 Score=35.31 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHh-CCCeeeccCccchHH
Q psy10664 24 PAVCLQVGLVQYALSKWIE-KGYTPLYTPFFMRKE 57 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~-~Gy~~v~~P~i~~~~ 57 (75)
.-.+++..+.+.+++++.+ +||.+|-||.|.+..
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st 235 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRST 235 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCC
Confidence 4567888999999999996 999999999998654
No 91
>KOG4163|consensus
Probab=79.87 E-value=3.9 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=42.5
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~ 61 (75)
+|-|+++|-+.-+..|+..|+-.+.++-|-+.+.-|.+|..+++++
T Consensus 88 sGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEk 133 (551)
T KOG4163|consen 88 SGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEK 133 (551)
T ss_pred cceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhh
Confidence 4579999999999999999999999999999999999999998775
No 92
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=74.59 E-value=6.4 Score=26.66 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCeeeccCccchHH-HHHHcC
Q psy10664 31 GLVQYALSKWIEKGYTPLYTPFFMRKE-VMQEVA 63 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~~P~i~~~~-~~~~sG 63 (75)
.+.+-+++.+...||+++.|+.++..+ .+...+
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~ 38 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALN 38 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcC
Confidence 455667888899999999999999983 555444
No 93
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=73.52 E-value=3.1 Score=26.01 Aligned_cols=32 Identities=22% Similarity=0.078 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhCCCeeeccCcc
Q psy10664 22 KGPAVCLQVGLVQYALSKWIEKGYTPLYTPFF 53 (75)
Q Consensus 22 ~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i 53 (75)
.+.+-.|...|.+++.+...++||+.+-+|.+
T Consensus 68 ~~~~~~l~~el~~~l~~~a~~qgy~~~G~v~V 99 (116)
T PF12401_consen 68 SPWGDRLARELADYLAEHAREQGYTFVGPVTV 99 (116)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHT-B-SS--EE
T ss_pred hhhHHHHHHHHHHHHHHHHHHCCCeecCCEEE
Confidence 34567899999999999999999999977764
No 94
>KOG1885|consensus
Probab=73.11 E-value=4.4 Score=31.76 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeccCcc
Q psy10664 26 VCLQVGLVQYALSKWIEKGYTPLYTPFF 53 (75)
Q Consensus 26 a~L~~aL~~f~~~~~~~~Gy~~v~~P~i 53 (75)
-..+-.++.|++.++-.+||-+|-||.|
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmm 252 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMM 252 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhh
Confidence 3456679999999999999999999976
No 95
>KOG0556|consensus
Probab=71.73 E-value=4.4 Score=31.40 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
+|.--+..++++.|..+||.+|.||-|+-.+.
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS 260 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS 260 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC
Confidence 46666788999999999999999999986544
No 96
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.09 E-value=5.9 Score=31.43 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
--+|+..+..-+++++.++||.+|-||.+-++
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkS 171 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKS 171 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccC
Confidence 35678888889999999999999999998764
No 97
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=66.87 E-value=5.8 Score=25.96 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCeeeccCccchHHHH
Q psy10664 30 VGLVQYALSKWIEKGYTPLYTPFFMRKEVM 59 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~ 59 (75)
+.|++=++++|.+.||++..||.=|...+-
T Consensus 3 ~~lV~pmR~ELt~~Gf~eL~T~e~Vd~~~~ 32 (136)
T PF06491_consen 3 EELVQPMREELTRAGFEELTTAEEVDEALK 32 (136)
T ss_dssp HHHCHHHHHHHHTTT-EE--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCCHHHHHHHHh
Confidence 346677899999999999999998887665
No 98
>KOG0554|consensus
Probab=62.50 E-value=11 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 23 GPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 23 ~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
+.-++++.|+..=..++..+++|+.|.||.|-..+
T Consensus 129 ~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~D 163 (446)
T KOG0554|consen 129 GAVLRVRSALAFATHSFFQSHDFTYINTPIITTND 163 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccC
Confidence 45678899998888889999999999999998774
No 99
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=61.82 E-value=15 Score=24.34 Aligned_cols=32 Identities=13% Similarity=0.000 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCeeeccCccchHHHHHHc
Q psy10664 31 GLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s 62 (75)
.+.+-+++.+...||.++.|..+++.+..+.-
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~ 35 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELF 35 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhc
Confidence 45566788888999999999999999766654
No 100
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=58.22 E-value=18 Score=23.56 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=24.5
Q ss_pred Ccceeecc---hHHHHHHHHHHHHHHHHHhCCCeeeccCccc
Q psy10664 16 GRGYFLKG---PAVCLQVGLVQYALSKWIEKGYTPLYTPFFM 54 (75)
Q Consensus 16 ~~~~~l~~---~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~ 54 (75)
+|..++.. .-..--.|| .-+++.++++||+.|..+.++
T Consensus 151 ~g~Iil~Hd~~~~~~t~~~l-~~~i~~l~~~Gy~~vtl~~l~ 191 (191)
T TIGR02764 151 PGDIILLHASDSAKQTVKAL-PTIIKKLKEKGYEFVTISELI 191 (191)
T ss_pred CCCEEEEeCCCCcHhHHHHH-HHHHHHHHHCCCEEEEHHHhC
Confidence 34444444 222334566 668889999999999877653
No 101
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=56.83 E-value=10 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCeeeccCccchHH
Q psy10664 32 LVQYALSKWIEKGYTPLYTPFFMRKE 57 (75)
Q Consensus 32 L~~f~~~~~~~~Gy~~v~~P~i~~~~ 57 (75)
--++.++.+.++||+.|.||+..--+
T Consensus 35 tYr~lLe~La~~Gy~ViAtPy~~tfD 60 (250)
T PF07082_consen 35 TYRYLLERLADRGYAVIATPYVVTFD 60 (250)
T ss_pred HHHHHHHHHHhCCcEEEEEecCCCCc
Confidence 35778888889999999999986533
No 102
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=54.14 E-value=19 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCcc
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFF 53 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i 53 (75)
..+-.+++.++.++..+||-+|-||.+
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~l 207 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPML 207 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEeccccc
Confidence 445678899999999999999999976
No 103
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=54.12 E-value=29 Score=24.75 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchH-HHHHHcC
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRK-EVMQEVA 63 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~-~~~~~sG 63 (75)
.+.+++-+++.+...||+++.+|.+... ..+..-+
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~ 109 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALN 109 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhC
Confidence 4556666788889999999999999987 3444443
No 104
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=54.06 E-value=13 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.056 Sum_probs=25.4
Q ss_pred cCcceeecchHH-HHHHHHHHHHHHHHHhCCCeeeccCccc
Q psy10664 15 GGRGYFLKGPAV-CLQVGLVQYALSKWIEKGYTPLYTPFFM 54 (75)
Q Consensus 15 G~~~~~l~~~ga-~L~~aL~~f~~~~~~~~Gy~~v~~P~i~ 54 (75)
-+|..++..++. .--.||.. +++.++++||+.|....++
T Consensus 185 ~~g~IiLlHd~~~~t~~aL~~-ii~~lk~~Gy~fvtl~el~ 224 (224)
T TIGR02884 185 HPGAILLLHAVSKDNAEALDK-IIKDLKEQGYTFKSLDDLM 224 (224)
T ss_pred CCCcEEEEECCCCCHHHHHHH-HHHHHHHCCCEEEEhHHcC
Confidence 356566665542 22235555 6778899999999877653
No 105
>PF14162 YozD: YozD-like protein
Probab=52.19 E-value=16 Score=20.29 Aligned_cols=18 Identities=17% Similarity=0.641 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCeee
Q psy10664 31 GLVQYALSKWIEKGYTPL 48 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v 48 (75)
.+-.|+..+|.+|||.|-
T Consensus 12 EIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHccCCCc
Confidence 467899999999999763
No 106
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=51.94 E-value=18 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
.-+.++++=++++-.++||.+|-||.+-..-+
T Consensus 17 l~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~v 48 (322)
T COG2269 17 LKRAAIIAAIRRFFAERGVLEVETPALSVAPV 48 (322)
T ss_pred HHHHHHHHHHHHHHHHcCceEecchHhhcCCC
Confidence 44566777778888899999999999866433
No 107
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=48.35 E-value=21 Score=16.56 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhCCCee
Q psy10664 31 GLVQYALSKWIEKGYTP 47 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~ 47 (75)
.|-.++.|.+.++||..
T Consensus 2 ~Ln~lI~~YL~~~Gy~~ 18 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKE 18 (27)
T ss_dssp HHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHCCcHH
Confidence 35567788889999863
No 108
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=46.72 E-value=27 Score=26.62 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchH
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRK 56 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~ 56 (75)
-....+.+++-+++.....||++|.+|.+-..
T Consensus 231 ~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~ 262 (489)
T PRK04172 231 KKHPYREFIDEVRDILVEMGFEEMKGPLVETE 262 (489)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEeeCCeeeec
Confidence 34556778888888889999999999998743
No 109
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=45.39 E-value=45 Score=25.85 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHH-HHHcC
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVA 63 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~-~~~sG 63 (75)
.+.+.+-+++.+...||+++.|..+++.+. ...-+
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~ 396 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMN 396 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhC
Confidence 455667778899999999999999999966 66544
No 110
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=44.91 E-value=27 Score=26.44 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHc
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~s 62 (75)
=+.....+.+=+++...++||..|.||.|=.-+.+...
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~ 53 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDG 53 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhc
Confidence 44455566666777778999999999999877776554
No 111
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=43.13 E-value=31 Score=24.37 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=25.4
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccc
Q psy10664 16 GRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFM 54 (75)
Q Consensus 16 ~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~ 54 (75)
+|..++..++..--.||. -+++.++++||+.|....++
T Consensus 230 ~G~IILmHd~~~T~~aL~-~iI~~Lk~kGy~fvtl~ell 267 (268)
T TIGR02873 230 PGAMVLMHPTASSTEGLE-EMITIIKEKGYKIGTITELL 267 (268)
T ss_pred CCcEEEEcCCccHHHHHH-HHHHHHHHCCCEEEeHHHhh
Confidence 444555555544445654 46778899999999887654
No 112
>KOG3043|consensus
Probab=36.73 E-value=11 Score=26.91 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=37.4
Q ss_pred cceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcc
Q psy10664 17 RGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 70 (75)
Q Consensus 17 ~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e 70 (75)
.-.++.-+-.=++-.-++..-|+..-.||+ |.+|++.+.+-|..+++...+++
T Consensus 40 ~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~-v~vPD~~~Gdp~~~~~~~~~~~~ 92 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFPNTREGADKVALNGYT-VLVPDFFRGDPWSPSLQKSERPE 92 (242)
T ss_pred eEEEEEEeeeccccHHHHHHHHHHhcCCcE-EEcchhhcCCCCCCCCChhhhHH
Confidence 344444454455556678888898889998 67899999888887776655443
No 113
>KOG1936|consensus
Probab=35.04 E-value=81 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeccCccchHHHHHH
Q psy10664 26 VCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQE 61 (75)
Q Consensus 26 a~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~ 61 (75)
..|++.+.+-+.+.-+.+|++.+.||.+=-++++.+
T Consensus 74 m~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~g 109 (518)
T KOG1936|consen 74 MALREKIFSTIKEVFKRHGAETIDTPVFELKEILTG 109 (518)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhh
Confidence 457777777777777889999999999988888654
No 114
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=34.43 E-value=37 Score=17.83 Aligned_cols=16 Identities=19% Similarity=0.548 Sum_probs=12.8
Q ss_pred HHHHhCCCeeeccCcc
Q psy10664 38 SKWIEKGYTPLYTPFF 53 (75)
Q Consensus 38 ~~~~~~Gy~~v~~P~i 53 (75)
..|.+.||..|..|..
T Consensus 25 r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 25 RHLKALGYKVISIPYY 40 (58)
T ss_pred HHHHHCCCEEEEecHH
Confidence 3456789999999975
No 115
>PHA01753 Holliday junction resolvase
Probab=33.86 E-value=49 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCeeeccCccc
Q psy10664 33 VQYALSKWIEKGYTPLYTPFFM 54 (75)
Q Consensus 33 ~~f~~~~~~~~Gy~~v~~P~i~ 54 (75)
++.+.++|.++||+.+..|.=.
T Consensus 11 E~~a~~~L~~~G~~il~rn~~~ 32 (121)
T PHA01753 11 EYKTLEILESNGFKALRIPVSG 32 (121)
T ss_pred HHHHHHHHHHCCCEEEEecccc
Confidence 4445556678999999888643
No 116
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=32.26 E-value=66 Score=15.37 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhCCCe
Q psy10664 29 QVGLVQYALSKWIEKGYT 46 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~ 46 (75)
+.-.++|+.-+|.++||.
T Consensus 6 R~lV~~yi~yKLsQrgy~ 23 (27)
T PF02180_consen 6 RELVEDYISYKLSQRGYV 23 (27)
T ss_dssp HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhhhcCCC
Confidence 345677888889999985
No 117
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=32.26 E-value=37 Score=23.37 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=18.9
Q ss_pred HHHHhCCCeeec-cCccchHHHHH
Q psy10664 38 SKWIEKGYTPLY-TPFFMRKEVMQ 60 (75)
Q Consensus 38 ~~~~~~Gy~~v~-~P~i~~~~~~~ 60 (75)
+.+.+.||++|+ .|.|+|.|+..
T Consensus 203 ~~~~~~gf~~vsLG~rILR~ETA~ 226 (240)
T TIGR00046 203 QLLKEKGFTPVLLGPRILRTETAP 226 (240)
T ss_pred HHHHHCCCEEEccCCcchhhccHH
Confidence 455688999998 99999998743
No 118
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=32.13 E-value=46 Score=19.86 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCCeeec
Q psy10664 29 QVGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~ 49 (75)
...+.+-+.+.|.++||.||.
T Consensus 17 ~~~iL~~Vy~AL~EKGYnPin 37 (79)
T PF06135_consen 17 IREILKQVYAALEEKGYNPIN 37 (79)
T ss_pred HHHHHHHHHHHHHHcCCChHH
Confidence 445666777788999999984
No 119
>KOG2411|consensus
Probab=31.68 E-value=57 Score=26.10 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCeeeccCccchH
Q psy10664 25 AVCLQVGLVQYALSKWI-EKGYTPLYTPFFMRK 56 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~-~~Gy~~v~~P~i~~~ 56 (75)
-.+|+.+++.=+++++. .+||.+|-||.+-++
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkr 209 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKR 209 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhcc
Confidence 45778888888888886 579999999998764
No 120
>COG4857 Predicted kinase [General function prediction only]
Probab=31.65 E-value=51 Score=24.87 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=38.1
Q ss_pred cccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCee
Q psy10664 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTP 47 (75)
Q Consensus 6 d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~ 47 (75)
-.|...|+.-|-|.|+-|.+..+-+-|-|+......++|+.+
T Consensus 242 vte~etkvIDPEFaFYGPmafDiG~~iaNl~~~~~s~~g~~~ 283 (408)
T COG4857 242 VTEKETKVIDPEFAFYGPMAFDIGMLIANLWMSLFSQKGFEE 283 (408)
T ss_pred eecCcceeeCccccccCcchhhHHHHHHHHHHHHHhhhchhh
Confidence 356778899999999999999999999999999999999983
No 121
>PRK03094 hypothetical protein; Provisional
Probab=31.61 E-value=45 Score=19.85 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCCeeeccC
Q psy10664 31 GLVQYALSKWIEKGYTPLYTP 51 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~~P 51 (75)
.|.+ ..+.|+++||+.|.-.
T Consensus 9 ~Ls~-i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 9 SLTD-VQQALKQKGYEVVQLR 28 (80)
T ss_pred CcHH-HHHHHHHCCCEEEecC
Confidence 3444 6678899999997543
No 122
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=30.56 E-value=61 Score=14.47 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhCCCeee
Q psy10664 30 VGLVQYALSKWIEKGYTPL 48 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v 48 (75)
..|...+.+.+.+.||...
T Consensus 4 ~~l~~lI~~yL~~~g~~~t 22 (34)
T smart00667 4 SELNRLILEYLLRNGYEET 22 (34)
T ss_pred HHHHHHHHHHHHHcCHHHH
Confidence 4456667777778888644
No 123
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=30.39 E-value=59 Score=20.53 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCCeeeccC
Q psy10664 33 VQYALSKWIEKGYTPLYTP 51 (75)
Q Consensus 33 ~~f~~~~~~~~Gy~~v~~P 51 (75)
++.+.+.|.++||+.+.+|
T Consensus 9 E~~a~~~L~~~G~~vlR~~ 27 (123)
T cd00523 9 ERELVKILEEKGFAVVRAP 27 (123)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 4455566678999999765
No 124
>PTZ00298 mevalonate kinase; Provisional
Probab=29.39 E-value=96 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=21.3
Q ss_pred cchhccCcc---ee-ecchHHHHHHHHHHHHHHHHHhCCCeeecc
Q psy10664 10 GAIVAGGRG---YF-LKGPAVCLQVGLVQYALSKWIEKGYTPLYT 50 (75)
Q Consensus 10 ~~k~~G~~~---~~-l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~ 50 (75)
++|+||+|+ .+ +..+-... ..+.+-+.+...+.+||=+.+
T Consensus 277 gaklSGsG~GG~v~al~~~~~~a-~~~~~~l~~~~~~~~~~w~~~ 320 (328)
T PTZ00298 277 GAKMSGTGRGGLVVALAASEDQR-DAIAKAVRARCPEAKFVWRYT 320 (328)
T ss_pred eeEeccCCCCeEEEEEecchhhH-HHHHHHHHHHhhhcCCeEEEE
Confidence 578999988 33 33322222 223333344456678876654
No 125
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=28.79 E-value=82 Score=22.04 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCeeeccCccchH-HHHHHc
Q psy10664 31 GLVQYALSKWIEKGYTPLYTPFFMRK-EVMQEV 62 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~~P~i~~~-~~~~~s 62 (75)
.+++-+++.+...||+++..|.+... ..+..-
T Consensus 21 ~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~L 53 (247)
T PF01409_consen 21 KFIREIRDIFVGMGFQEVEGPEVESEFYNFDAL 53 (247)
T ss_dssp HHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGG
T ss_pred HHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhh
Confidence 34455556667889999999999654 334433
No 126
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=28.74 E-value=67 Score=19.04 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCCeeec
Q psy10664 33 VQYALSKWIEKGYTPLY 49 (75)
Q Consensus 33 ~~f~~~~~~~~Gy~~v~ 49 (75)
++.+.++|.++||+.+-
T Consensus 3 E~~A~~~L~~~G~~IL~ 19 (93)
T PF02021_consen 3 EELAARYLERKGYRILE 19 (93)
T ss_dssp HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHCCCEEee
Confidence 45678889999998763
No 127
>PF14068 YuiB: Putative membrane protein
Probab=28.51 E-value=48 Score=20.67 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCee
Q psy10664 32 LVQYALSKWIEKGYTP 47 (75)
Q Consensus 32 L~~f~~~~~~~~Gy~~ 47 (75)
+.-++.+.++++||++
T Consensus 86 ~SG~tIr~LRk~GYqM 101 (102)
T PF14068_consen 86 VSGITIRTLRKKGYQM 101 (102)
T ss_pred HHHHHHHHHHHccccC
Confidence 4567888999999985
No 128
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=28.48 E-value=1.1e+02 Score=24.38 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCC
Q psy10664 28 LQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQL 65 (75)
Q Consensus 28 L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~ 65 (75)
-.+.+.+-+++.+...||++|.|-.+++++..+..+..
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~ 389 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLE 389 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccC
Confidence 34456666888889999999999999999998876654
No 129
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=27.82 E-value=94 Score=23.11 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 30 VGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
..+++-+++.+..-||+++.+|.|....-
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~ 139 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYY 139 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHH
Confidence 44555666666778999999999986553
No 130
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=27.48 E-value=69 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCeeeccCc
Q psy10664 31 GLVQYALSKWIEKGYTPLYTPF 52 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~~P~ 52 (75)
.|.+=+...|..+||+.|..|.
T Consensus 37 ~l~~~i~~~L~~kGY~vv~~P~ 58 (215)
T PF05818_consen 37 NLESQIISALQAKGYQVVDDPD 58 (215)
T ss_pred chHHHHHHHHHHCCCEEecChh
Confidence 3555566678899999999994
No 131
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=26.60 E-value=1.3e+02 Score=19.73 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=27.9
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCc
Q psy10664 18 GYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPF 52 (75)
Q Consensus 18 ~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~ 52 (75)
|..++|+|+ ++.|+--.++...++|++.+-.=.
T Consensus 6 ~~iiKPDaV--~R~LIG~IisrfE~~Glkiva~K~ 38 (135)
T COG0105 6 LSIIKPDAV--KRGLIGEIISRFEKKGLKIVALKM 38 (135)
T ss_pred EEEECcchh--hhhhHHHHHHHHHHCCCEEEeeee
Confidence 678889885 688999999999999999886554
No 132
>PRK14677 hypothetical protein; Provisional
Probab=26.54 E-value=77 Score=19.49 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCeeec
Q psy10664 33 VQYALSKWIEKGYTPLY 49 (75)
Q Consensus 33 ~~f~~~~~~~~Gy~~v~ 49 (75)
++.+.+.|+++||+.+-
T Consensus 7 E~~A~~~L~~~Gy~Il~ 23 (107)
T PRK14677 7 EELACKFLKKKGYKILE 23 (107)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 56778888999999764
No 133
>PRK05473 hypothetical protein; Provisional
Probab=26.53 E-value=64 Score=19.54 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.+..-+-+.|.++||.||.
T Consensus 21 ~eiL~~Vy~AL~EKGYNPin 40 (86)
T PRK05473 21 REILTTVYDALEEKGYNPIN 40 (86)
T ss_pred HHHHHHHHHHHHHcCCChHH
Confidence 44556677788999999984
No 134
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=26.44 E-value=62 Score=21.89 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=20.9
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHhCCCeeec-cCccchHHHHH
Q psy10664 18 GYFLKGPAVCLQVGLVQYALSKWIEKGYTPLY-TPFFMRKEVMQ 60 (75)
Q Consensus 18 ~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~-~P~i~~~~~~~ 60 (75)
..+.=|+|-.=+..+. .+.+.||++|. .|.++|.|+..
T Consensus 178 ~i~IGPEGGfs~~E~~-----~~~~~g~~~vsLG~~ILR~ETAa 216 (225)
T PF04452_consen 178 AIIIGPEGGFSEEEIE-----FLKEAGFQPVSLGPRILRTETAA 216 (225)
T ss_dssp EEEE--TT---HHHHH-----HHHHCTEEEEB-SSS---HHHHH
T ss_pred EEEECCCCCCCHHHHH-----HHHHCCCEEEEcCCCEEehHHHH
Confidence 4455566666555543 44679999998 89999998754
No 135
>TIGR02366 DHAK_reg probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.
Probab=26.06 E-value=21 Score=22.57 Aligned_cols=42 Identities=5% Similarity=0.083 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCCCCcc
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDE 70 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~~~~e 70 (75)
.++|.+=+.+.+.++||.-+++-.|.++.=..++.+.-+|++
T Consensus 5 k~~I~~a~~~Ll~~k~~~~ITV~~I~~~AgvsR~TFY~hF~d 46 (176)
T TIGR02366 5 KKKIAKAFKDLMEVQAFSKISVSDIMSTAQIRRQTFYNHFQD 46 (176)
T ss_pred HHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 456677777888899999999999888777666666666654
No 136
>PRK07922 N-acetylglutamate synthase; Validated
Probab=25.98 E-value=1.7e+02 Score=18.67 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcCCCC
Q psy10664 28 LQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLA 66 (75)
Q Consensus 28 L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG~~~ 66 (75)
+-.+|.+.+.+..+++|++.+.. .......|++.|+-.
T Consensus 87 iG~~Ll~~~~~~a~~~g~~~l~~-~~~~~~fY~k~GF~~ 124 (169)
T PRK07922 87 VGHAIVERLLDVARELGLSRVFV-LTFEVEFFARHGFVE 124 (169)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEE-EeccHHHHHHCCCEE
Confidence 45566666666666778876542 111357899999644
No 137
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=25.80 E-value=75 Score=17.69 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhCCCee
Q psy10664 27 CLQVGLVQYALSKWIEKGYTP 47 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~ 47 (75)
.-++.+.+|+.++..++||-|
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~P 26 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPP 26 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS--
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 346778889999999999875
No 138
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.74 E-value=66 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=11.6
Q ss_pred HHHHHHhCCCeeecc
Q psy10664 36 ALSKWIEKGYTPLYT 50 (75)
Q Consensus 36 ~~~~~~~~Gy~~v~~ 50 (75)
..+.|.++||+.|..
T Consensus 13 v~~~L~~~GyeVv~l 27 (80)
T PF03698_consen 13 VKEALREKGYEVVDL 27 (80)
T ss_pred HHHHHHHCCCEEEec
Confidence 456788999998753
No 139
>PRK12497 hypothetical protein; Reviewed
Probab=25.66 E-value=80 Score=19.53 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCeeec
Q psy10664 29 QVGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~ 49 (75)
-+.=++.+.++|.++||+.+-
T Consensus 9 G~~gE~~A~~~L~~~Gy~Il~ 29 (119)
T PRK12497 9 GAAGEDLAARYLESKGLRILA 29 (119)
T ss_pred HHHHHHHHHHHHHHCCCEEEc
Confidence 345567888899999999774
No 140
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=25.25 E-value=64 Score=18.89 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHH
Q psy10664 24 PAVCLQVGLVQYAL 37 (75)
Q Consensus 24 ~ga~L~~aL~~f~~ 37 (75)
.|+.||.||..+-.
T Consensus 40 RGA~LEaAl~~lR~ 53 (72)
T PF09498_consen 40 RGARLEAALRQLRQ 53 (72)
T ss_pred hHHHHHHHHHHHHh
Confidence 58999999987643
No 141
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=25.21 E-value=55 Score=19.67 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCeeeccC
Q psy10664 35 YALSKWIEKGYTPLYTP 51 (75)
Q Consensus 35 f~~~~~~~~Gy~~v~~P 51 (75)
-.+|+++..||+.|..-
T Consensus 54 ~VLnKLE~~G~kVvsmt 70 (83)
T PF06399_consen 54 VVLNKLEKMGYKVVSMT 70 (83)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhcCeEEEEEe
Confidence 46899999999988753
No 142
>PLN02619 nucleoside-diphosphate kinase
Probab=25.05 E-value=91 Score=22.16 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=30.8
Q ss_pred cccccchhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeecc
Q psy10664 6 DSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYT 50 (75)
Q Consensus 6 d~~~~~k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~ 50 (75)
|.+..+.....-+.+++|+++ .+-++.=+++.+.++||+.+.-
T Consensus 80 ~~~~~a~~~ErTlaiIKPDaV--~rglvGeII~rIe~~Gf~Iva~ 122 (238)
T PLN02619 80 EQEAHAAEMERTFIAIKPDGV--QRGLISEIISRFERKGFKLVAI 122 (238)
T ss_pred ccccccchhceEEEEECcchh--hcCchHHHHHHHHHCCCEEEeh
Confidence 555555556677899999996 4555556677888999997653
No 143
>PRK14686 hypothetical protein; Provisional
Probab=24.76 E-value=85 Score=19.54 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhCCCeeec
Q psy10664 29 QVGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~ 49 (75)
-+.=++.+.++|+++||+.+-
T Consensus 8 G~~gE~~A~~~L~~~Gy~il~ 28 (119)
T PRK14686 8 GKEGEDLAVEFLIKKGYTILE 28 (119)
T ss_pred HHHHHHHHHHHHHHCCCEEEE
Confidence 344567888899999999764
No 144
>PRK07080 hypothetical protein; Validated
Probab=24.35 E-value=54 Score=24.27 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHHH
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVM 59 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~ 59 (75)
---|+++++..+.++|+.+-.=|.-|++.+|
T Consensus 285 GFGlER~a~All~~hG~d~~~WP~~Vr~~l~ 315 (317)
T PRK07080 285 GFGLERLALALFRHHGLDPAAWPAAVRDVLW 315 (317)
T ss_pred ecCHHHHHHHHHHHhCCChhhccHHHHHHhc
Confidence 3457889999999999999999999999886
No 145
>PRK14678 hypothetical protein; Provisional
Probab=24.12 E-value=87 Score=19.63 Aligned_cols=20 Identities=25% Similarity=-0.036 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.=++.+.++|.++||+.+-
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~ 29 (120)
T PRK14678 10 DWGEQVAAAYLERCGYTIIA 29 (120)
T ss_pred HHHHHHHHHHHHHCCCEEee
Confidence 34467788889999999764
No 146
>PRK14675 hypothetical protein; Provisional
Probab=23.91 E-value=90 Score=19.66 Aligned_cols=21 Identities=10% Similarity=-0.202 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhCCCeeec
Q psy10664 29 QVGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~ 49 (75)
-+.=++.+..+|.++||+.+-
T Consensus 11 G~~gE~~A~~~L~~~G~~il~ 31 (125)
T PRK14675 11 GEIGESIAVTYLKGLRYKIVE 31 (125)
T ss_pred hHHHHHHHHHHHHHCCCEEEE
Confidence 345577888899999999874
No 147
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=23.88 E-value=1.5e+02 Score=23.09 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHHH-HHc
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVM-QEV 62 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~-~~s 62 (75)
.+.+.+-+++.+...||+++.|-.+++.+.. +.-
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~ 398 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRM 398 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHh
Confidence 4566667788889999999999999999654 443
No 148
>PF04313 HSDR_N: Type I restriction enzyme R protein N terminus (HSDR_N); InterPro: IPR007409 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. Type III restriction endonucleases (3.1.21.5 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. Type III enzymes are hetero-oligomeric, multifunctional proteins composed of two subunits, Res and Mod. The Mod subunit recognises the DNA sequence specific for the system and is a modification methyltransferase; as such it is functionally equivalent to the M and S subunits of type I restriction endonuclease. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognise short 5-6 bp long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Type III enzymes belong to the beta-subfamily of N6 adenine methyltransferases, containing the nine motifs that characterise this family, including motif I, the AdoMet binding pocket (FXGXG), and motif IV, the catalytic region (S/D/N (PP) Y/F) [, ]. This entry represents the N-terminal domain found in both the R subunit (HsdR) of type I enzymes and the Res subunit of type III enzymes. The type I enzyme represented is EcoRI, which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity [, , ]. This domain is often found adjacent to a methylase domain (IPR002052 from INTERPRO) in restriction endonucleases or methylases. In one of the proteins, Q97RD0 from SWISSPROT, it is adjacent to a helicase domain (IPR011545 from INTERPRO) in a putative restriction endonuclease.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006304 DNA modification; PDB: 2Y3T_B 2W74_B 2W00_B.
Probab=22.92 E-value=94 Score=20.30 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=13.5
Q ss_pred HHHHHH-HHHHHHHhCCCeeeccCccc
Q psy10664 29 QVGLVQ-YALSKWIEKGYTPLYTPFFM 54 (75)
Q Consensus 29 ~~aL~~-f~~~~~~~~Gy~~v~~P~i~ 54 (75)
|.++++ .+.+.+.+.||+.+.++.+-
T Consensus 4 E~~~e~~~i~~~l~~lGy~~~~~~~~~ 30 (194)
T PF04313_consen 4 EKELEQNLIIELLEELGYEYLPPKDIE 30 (194)
T ss_dssp HHHHHHHHHHHHH-CTT-EE-------
T ss_pred HHHHHHHHHHHHHHHcCCEEeeccccc
Confidence 456777 78888889999988776554
No 149
>PRK14689 hypothetical protein; Provisional
Probab=22.59 E-value=99 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhCCCeeec
Q psy10664 28 LQVGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 28 L~~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+-+.=++.+..+|.++||+.+-
T Consensus 10 ~G~~gE~~Aa~~L~~~Gy~Il~ 31 (124)
T PRK14689 10 LGAWAEERVLRLLQRRGWRLLD 31 (124)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE
Confidence 3345577888899999999764
No 150
>PRK14679 hypothetical protein; Provisional
Probab=22.54 E-value=99 Score=19.67 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeeec
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~ 49 (75)
.+-+.=++.+.++|.++||+.+-
T Consensus 16 ~~G~~gE~~A~~~L~~~Gy~Il~ 38 (128)
T PRK14679 16 GRGLSAEGLALLALMLKGYRPLA 38 (128)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEe
Confidence 34445578888999999999763
No 151
>PRK14682 hypothetical protein; Provisional
Probab=22.44 E-value=1e+02 Score=19.24 Aligned_cols=20 Identities=10% Similarity=-0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.=++.+..+|.++||+.+.
T Consensus 8 ~~gE~~A~~~L~~~Gy~Il~ 27 (117)
T PRK14682 8 NKAELQACKFLHTQALEILA 27 (117)
T ss_pred HHHHHHHHHHHHHCCCEEee
Confidence 34467788889999999874
No 152
>PRK14688 hypothetical protein; Provisional
Probab=22.38 E-value=1e+02 Score=19.38 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.=++.+..+|+++||+.+.
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~ 29 (121)
T PRK14688 10 EFGEKLAAEYLKGMGYSIIQ 29 (121)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 34467788889999999764
No 153
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=22.37 E-value=91 Score=16.32 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeccCccchHHH
Q psy10664 27 CLQVGLVQYALSKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 27 ~L~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
.+|.+|.+|+.+. ...|+. |+. .+++...
T Consensus 3 ~~E~~L~~wi~~~-~~~g~~-vt~-~~i~~~A 31 (66)
T PF03221_consen 3 ELEKALVEWIKRM-RRKGFP-VTR-EMIREKA 31 (66)
T ss_dssp HHHHHHHHHHHHH-CGCT----SC-HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHcCCC-CCH-HHHHHHH
Confidence 5899999999987 566665 444 4444433
No 154
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=21.93 E-value=1.9e+02 Score=17.87 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=21.8
Q ss_pred eeecchHHHHHHHHHHHHHHHHHh-CCCeeecc
Q psy10664 19 YFLKGPAVCLQVGLVQYALSKWIE-KGYTPLYT 50 (75)
Q Consensus 19 ~~l~~~ga~L~~aL~~f~~~~~~~-~Gy~~v~~ 50 (75)
..|.++|-....++.+.+.+.+++ .|+..|.+
T Consensus 60 V~WF~R~qe~qd~vA~~It~~v~~~~g~~~V~V 92 (108)
T PF08921_consen 60 VLWFDRGQEVQDKVAQAITEHVKKANGYQDVAV 92 (108)
T ss_dssp EEES---HHHHHHHHHHHHHHHHHH-TT---EE
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 469999999999999999999888 89887653
No 155
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=21.75 E-value=1.5e+02 Score=23.45 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHH-HHHcC
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEV-MQEVA 63 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~-~~~sG 63 (75)
.+.+.+-+++.+...||+++.|-.+.+.+. +..-+
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~ 434 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLN 434 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhc
Confidence 456677778899999999999999999865 55443
No 156
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.65 E-value=92 Score=16.47 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCeeecc
Q psy10664 35 YALSKWIEKGYTPLYT 50 (75)
Q Consensus 35 f~~~~~~~~Gy~~v~~ 50 (75)
-+.+.++++||+.+.|
T Consensus 56 ~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 56 PIIEDLRRAGYEVLWP 71 (72)
T ss_pred HHHHHHHHCCCeeeCC
Confidence 5566778899987654
No 157
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=21.31 E-value=18 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=25.4
Q ss_pred hhccCcceeecchHHHHHHHHHHHHHHHHHhCCCeeeccCcc
Q psy10664 12 IVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFF 53 (75)
Q Consensus 12 k~~G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i 53 (75)
+.+|..|..|.++|.-. ..|+--|||.|..|.=
T Consensus 6 eeCgtsFvmWf~~Gtpv---------aTlkcg~YTiVyAP~k 38 (165)
T PF11025_consen 6 EECGTSFVMWFGEGTPV---------ATLKCGDYTIVYAPEK 38 (165)
T ss_pred hhcceeEEEEecCCcce---------EEEecCCEEEEEcccc
Confidence 46899999999999642 3445569999999864
No 158
>KOG3139|consensus
Probab=21.15 E-value=1.4e+02 Score=20.14 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhCCCeeeccCccch----HHHHHHcCCC
Q psy10664 28 LQVGLVQYALSKWIEKGYTPLYTPFFMR----KEVMQEVAQL 65 (75)
Q Consensus 28 L~~aL~~f~~~~~~~~Gy~~v~~P~i~~----~~~~~~sG~~ 65 (75)
+-.||.+=++|..+++||.+|.-=.-+. -.+++.-|+.
T Consensus 101 Ig~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~ 142 (165)
T KOG3139|consen 101 IGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFK 142 (165)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCce
Confidence 5567777788888899999986432221 2346666643
No 159
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=21.13 E-value=98 Score=19.16 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=18.7
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHhCCCeeecc
Q psy10664 18 GYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYT 50 (75)
Q Consensus 18 ~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~ 50 (75)
+.+++|+... +....=+++.+.++||+.+..
T Consensus 4 l~lIKPda~~--~~~~g~Ii~~l~~~Gf~I~~~ 34 (135)
T PF00334_consen 4 LALIKPDAVA--RGHAGEIIDRLEEAGFEIVAM 34 (135)
T ss_dssp EEEE-HHHHH--TT-HHHHHHHHHHHT-EEEEE
T ss_pred EEEEChhHhh--ccchHHHHHHHHHcCCeeeeh
Confidence 5678888752 224455677778889998754
No 160
>PRK14680 hypothetical protein; Provisional
Probab=21.05 E-value=1.1e+02 Score=19.59 Aligned_cols=20 Identities=15% Similarity=-0.147 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.=++.+.++|.++||+.+-
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~ 29 (134)
T PRK14680 10 QHGEDAAAALLQRTGHRILA 29 (134)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 44467788889999999764
No 161
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=21.03 E-value=1.3e+02 Score=21.39 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCeeeccCccc
Q psy10664 24 PAVCLQVGLVQYALSKWIEKGYTPLYTPFFM 54 (75)
Q Consensus 24 ~ga~L~~aL~~f~~~~~~~~Gy~~v~~P~i~ 54 (75)
-|+.|-+++.-=+...+.+.||+ ||...
T Consensus 191 ~g~~ilqa~faeai~~mv~~g~~---pPvf~ 218 (243)
T COG4821 191 SGVTILQATFAEAIELMVEKGYT---PPVFL 218 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC---CCeee
Confidence 48999999999999999999998 45544
No 162
>PRK14676 hypothetical protein; Provisional
Probab=20.95 E-value=1.1e+02 Score=19.02 Aligned_cols=20 Identities=5% Similarity=-0.149 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.=++.+.+.|.++||+.+-
T Consensus 11 ~~gE~~A~~~L~~~Gy~Il~ 30 (117)
T PRK14676 11 QTAEEAVARIYDRSGRPVAA 30 (117)
T ss_pred HHHHHHHHHHHHHCCCEEee
Confidence 34467788889999999764
No 163
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=20.94 E-value=2.2e+02 Score=17.66 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=22.1
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHhCCCeeecc
Q psy10664 18 GYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYT 50 (75)
Q Consensus 18 ~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~v~~ 50 (75)
+.+.+|++..- +..-+++.+.+.||+.+..
T Consensus 4 l~iIKPdav~~---~~g~Il~~i~~~Gf~I~~~ 33 (132)
T cd04416 4 LALIKPDAVAE---KKDEILEKIKEAGFEILAQ 33 (132)
T ss_pred EEEEChHHHHH---HHHHHHHHHHHCCCEEEEe
Confidence 56778888642 5667788888999987653
No 164
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.79 E-value=85 Score=16.08 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=16.4
Q ss_pred cCcceeecchHHHHHHHHHHHHHHHHHhCCCee
Q psy10664 15 GGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTP 47 (75)
Q Consensus 15 G~~~~~l~~~ga~L~~aL~~f~~~~~~~~Gy~~ 47 (75)
|...+.+.-+. .+-+.+.++++||+.
T Consensus 39 ~~~~v~~~ve~-------~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTED-------IEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCC-------HHHHHHHHHHCCceE
Confidence 44445555444 446677788899975
No 165
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=20.72 E-value=2.3e+02 Score=23.06 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCeeeccCccchHHHHHHcC
Q psy10664 29 QVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVA 63 (75)
Q Consensus 29 ~~aL~~f~~~~~~~~Gy~~v~~P~i~~~~~~~~sG 63 (75)
.+...+-+++.+...||.++.|-.+++.+..+.-+
T Consensus 493 ~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~ 527 (798)
T TIGR00472 493 NYLLLRKLRTLLVGLGLNEVITYSLVSSEKAEKFN 527 (798)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhhc
Confidence 33343556788899999999999999997666654
No 166
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=20.50 E-value=1.2e+02 Score=19.01 Aligned_cols=19 Identities=16% Similarity=-0.076 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCCeeec
Q psy10664 31 GLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 31 aL~~f~~~~~~~~Gy~~v~ 49 (75)
.=++.+.++|.++||+.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~ 29 (119)
T TIGR00252 11 AGESQARAWLEQKGLKFIA 29 (119)
T ss_pred HHHHHHHHHHHHCCCEEeE
Confidence 3467788888999999764
No 167
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=20.49 E-value=1.8e+02 Score=16.38 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccC-ccchHHHHHHcC
Q psy10664 25 AVCLQVGLVQYALSKWIEKGYTPLYTP-FFMRKEVMQEVA 63 (75)
Q Consensus 25 ga~L~~aL~~f~~~~~~~~Gy~~v~~P-~i~~~~~~~~sG 63 (75)
|--+-.+|.+.+.+.+++ |++.+.+. .......|++.|
T Consensus 78 ~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~G 116 (117)
T PF13673_consen 78 GRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLG 116 (117)
T ss_dssp TSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCC
Confidence 445677888888887755 98877664 223334466655
No 168
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=20.47 E-value=1.4e+02 Score=18.64 Aligned_cols=45 Identities=7% Similarity=-0.143 Sum_probs=28.0
Q ss_pred cchHHHHHHHHHHHHHHHH-HhCCCeeeccCccchHHHHHHcCCCC
Q psy10664 22 KGPAVCLQVGLVQYALSKW-IEKGYTPLYTPFFMRKEVMQEVAQLA 66 (75)
Q Consensus 22 ~~~ga~L~~aL~~f~~~~~-~~~Gy~~v~~P~i~~~~~~~~sG~~~ 66 (75)
+|-|..+-.++++|+.+.+ ..+=.-.+.+-......+++++|+-.
T Consensus 107 ~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~ 152 (179)
T PRK10151 107 QGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTL 152 (179)
T ss_pred CcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 3446677777888877553 12222334456666778899999653
No 169
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=20.22 E-value=1.7e+02 Score=19.09 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHH---------HHHHhCCCeeeccCccchHHH
Q psy10664 24 PAVCLQVGLVQYAL---------SKWIEKGYTPLYTPFFMRKEV 58 (75)
Q Consensus 24 ~ga~L~~aL~~f~~---------~~~~~~Gy~~v~~P~i~~~~~ 58 (75)
.|-..|..|.+++. +.++++||.. ||++.=..-
T Consensus 31 ~g~e~E~~L~~~L~~~gi~f~tE~~lR~~g~~k--TPDi~l~~P 72 (139)
T PF14811_consen 31 IGQEYEVILEKYLRKLGIPFLTEDDLRARGYDK--TPDIKLEVP 72 (139)
T ss_pred hHHHHHHHHHHHHHHCCCccccHHHHHHcCCCC--CCCEEecCC
Confidence 46666777777765 3467788886 888764443
No 170
>PRK14684 hypothetical protein; Provisional
Probab=20.09 E-value=1.2e+02 Score=19.00 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhCCCeeec
Q psy10664 30 VGLVQYALSKWIEKGYTPLY 49 (75)
Q Consensus 30 ~aL~~f~~~~~~~~Gy~~v~ 49 (75)
+.=++.+.+.|+++||+.+.
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~ 29 (120)
T PRK14684 10 FNAEKTACRYLQKQGLSFIT 29 (120)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 34467788889999999764
No 171
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=20.08 E-value=1.2e+02 Score=17.32 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHhCCCeeec--cCccchHHHHHH
Q psy10664 37 LSKWIEKGYTPLY--TPFFMRKEVMQE 61 (75)
Q Consensus 37 ~~~~~~~Gy~~v~--~P~i~~~~~~~~ 61 (75)
++.++..|+.||+ +|+.=+++..+.
T Consensus 9 R~~lRa~GLRPVqiWVPDtr~p~F~~E 35 (65)
T PF11455_consen 9 RERLRAAGLRPVQIWVPDTRRPEFAAE 35 (65)
T ss_pred HHHHHHcCCCcceeeCCCCCChHHHHH
Confidence 5678889999975 788777666443
Done!