RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10664
         (75 letters)



>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
           {Thermus thermophilus, strain hb27 [TaxId: 274]}
          Length = 311

 Score = 51.3 bits (122), Expect = 4e-10
 Identities = 14/73 (19%), Positives = 35/73 (47%)

Query: 3   DGVDSEAGAIVAGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEV 62
           +G      + V+G R Y LKG     ++ L+++A+     +G+ P+  P + R++     
Sbjct: 33  NGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT 92

Query: 63  AQLAQFDEELYKM 75
                + ++++ +
Sbjct: 93  GHFPAYRDQVWAI 105


>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 291

 Score = 37.8 bits (87), Expect = 3e-05
 Identities = 9/61 (14%), Positives = 23/61 (37%)

Query: 14 AGGRGYFLKGPAVCLQVGLVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELY 73
           G            ++  + +Y + K +  GY  +YTP     ++ +       + E+++
Sbjct: 18 VGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMF 77

Query: 74 K 74
           
Sbjct: 78 P 78


>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
          {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 29.7 bits (66), Expect = 0.020
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 32 LVQYALSKWIEKGYTPLYTPFFMRKEVMQEVAQLAQFDEELYKM 75
          L  +  SK  E  Y  +  PF M + + ++      + + ++  
Sbjct: 36 LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT 79


>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 184

 Score = 27.4 bits (60), Expect = 0.13
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 44  GYTPLYTPFFMRKEVM 59
           GY P   P+  R EV 
Sbjct: 165 GYDPPMKPYGRRNEVW 180


>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 235

 Score = 22.6 bits (48), Expect = 5.7
 Identities = 2/17 (11%), Positives = 6/17 (35%)

Query: 51  PFFMRKEVMQEVAQLAQ 67
             FM  +    + +  +
Sbjct: 214 EGFMAPKAWTVLTEYYK 230


>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
          transfer flavoprotein alpha subunit {Methylophilus
          methylotrophus [TaxId: 17]}
          Length = 123

 Score = 22.4 bits (48), Expect = 6.2
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 7  SEAGAIVAGGRG 18
          +    I++ GRG
Sbjct: 5  TTVDFIMSIGRG 16


>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron
          transfer flavoprotein alpha subunit {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 124

 Score = 22.4 bits (48), Expect = 7.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 7  SEAGAIVAGGRG 18
          + A  +V+GGRG
Sbjct: 6  TGAKVVVSGGRG 17


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 289,925
Number of extensions: 11074
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)