BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10666
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 85/122 (69%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + +DEIE++ Q+R+L+AF+LDP QWG NVQPYSGSPAN AVYT L
Sbjct: 90 RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG 149
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
+ISATSIFFES+PYK+N +TGLIDY++LA +ARLF+PRLIIA
Sbjct: 150 LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 209
Query: 106 ET 107
T
Sbjct: 210 GT 211
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 71 RYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 130
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+PYKVN +TG I+YD+L E+ARLF P+LIIA
Sbjct: 131 LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIA 190
Query: 106 ET 107
T
Sbjct: 191 GT 192
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 80 RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 139
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+ YKVN +TG IDYD+L E+ARLF P+LIIA
Sbjct: 140 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199
Query: 106 ET 107
T
Sbjct: 200 GT 201
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 80 RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 139
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+ YKVN +TG IDYD+L E+ARLF P+LIIA
Sbjct: 140 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199
Query: 106 ET 107
T
Sbjct: 200 GT 201
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 80 RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 139
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+ YKVN +TG IDYD+L E+ARLF P+LIIA
Sbjct: 140 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 199
Query: 106 ET 107
T
Sbjct: 200 GT 201
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 67 RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 126
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+ YKVN +TG IDYD+L E+ARLF P+LIIA
Sbjct: 127 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 186
Query: 106 ET 107
T
Sbjct: 187 GT 188
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E + Q+R+L+A++LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 75 RYYGGTEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXG 134
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES PYKV ETG I+YD+L E+A LF P+LIIA
Sbjct: 135 LDLPDGGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIA 194
Query: 106 ET 107
T
Sbjct: 195 GT 196
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +F+DEIE +A +R K FN NVQP SGS AN VY
Sbjct: 61 RYYGGCEFVDEIETLAIERCKKLFNCKF----ANVQPNSGSQANQGVYAALINPGDKILG 116
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K+S++ +ES Y V + G IDY+K+ E A+ KP+LI+
Sbjct: 117 XDLSHGGHLTHGAKVSSSGKXYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVC 170
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +++D +E +A R+ + F D NVQP+SGS ANFAVYT L
Sbjct: 66 RYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLG 121
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
++ + + +PY ++ E+G IDYD+ A+ A+ KP+ II
Sbjct: 122 XNLAQGGHLTHGSPVNFSGKLYNIVPYGID-ESGKIDYDEXAKLAKEHKPKXIIG 175
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKISATSIF- 71
+YYGG +F DE+E +A +R + FN NVQP+SG+ AN AV L ++
Sbjct: 68 RYYGGCEFADEVEALAIERVKRLFN----AGHANVQPHSGAQANGAVMLALAKPGDTVLG 123
Query: 72 ---------------------FESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
F +L Y V+ +T LIDYD++ A+ KP LIIA
Sbjct: 124 MSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIA 178
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 26/113 (23%)
Query: 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY-------------- 60
YGG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 61 YGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMN 116
Query: 61 --------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 117 LSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+Y GG +++D +E +A++R+ + F + NVQP+SG+ AN AVY
Sbjct: 59 RYAGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + + + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +++D +E +A R+ + F D NVQP+SGS ANFAVYT L
Sbjct: 63 RYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLG 118
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
++ + + +PY ++ TG IDY L + A+ KP++II
Sbjct: 119 MNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIG 172
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +++D +E +A R+ + F D NVQP+SGS ANFAVYT L
Sbjct: 63 RYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLG 118
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
++ + + +PY ++ TG IDY L + A+ KP++II
Sbjct: 119 MNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIG 172
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+Y+GG +++D +E +A R+ + F D NVQP+SGS ANFAVYT L
Sbjct: 63 RYFGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLG 118
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
++ + + +PY ++ TG IDY L + A+ KP++II
Sbjct: 119 MNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIG 172
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +F+D E +A R+ F + NVQP+SG AN AVY
Sbjct: 62 RYYGGCEFVDVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLG 117
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + F+ + Y V+ +T I+YD++ + A KP+LI+A
Sbjct: 118 MNLSHGGHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVA 172
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + ID +E +A +R+ F W NVQP+SGS AN AVY L
Sbjct: 59 RYYGGCEVIDRVESLAIERAKALFG---AAW-ANVQPHSGSQANMAVYMALMEPGDTLMG 114
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
+++ + ++ + Y V +T LID +++ A +P++I+A
Sbjct: 115 MDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVA 169
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG + +D +E +A+ R+ F + NVQP+SG+ AN AV
Sbjct: 81 RYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLG 136
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G++++ + +E+ Y V+ T LID D + +A F+P++IIA
Sbjct: 137 LDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIA 191
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 177 RRPRGRPKNRWK--DQVRKDMTILNLTTEDSFNRALWRQK 214
+R R K WK DQ+R +T L + EDS + WRQ+
Sbjct: 423 QRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWRQE 462
>pdb|3RGW|S Chain S, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 339
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 16 GGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKISATSIFFESL 75
GG FI++++ VA+ WGC VQ +P + I
Sbjct: 91 GGRPFIEQLKYVAKDAKAIISWGSCASWGC-VQAAKPNPTQATPVHKVITDKPIIKVPGC 149
Query: 76 PYKVNTETGLIDY----DKLAESARLFKPRLIIAETIED 110
P TG+I Y D++ E R +P++ ++ I D
Sbjct: 150 PPIAEVMTGVITYMLTFDRIPELDRQGRPKMFYSQRIHD 188
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 7 SSDEEGKYYGGN-----QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQP 49
++DE+G +G N F+D IE+ S ++P+++G N+ P
Sbjct: 240 TTDEQGAVFGFNLVYSGNFLDAIEVDQYSTSRILTGINPDEFGWNLAP 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,965,218
Number of Sequences: 62578
Number of extensions: 273673
Number of successful extensions: 670
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 30
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)