BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10666
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35623|GLYC_SHEEP Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1
PE=1 SV=3
Length = 484
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 83/122 (68%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E++ Q+R+L+ + LDPE WG NVQPYSGSPANFAVYT L
Sbjct: 81 RYYGGTEFIDELEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMG 140
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+PYKVN +TG I+YD+L E+ARLF PRLIIA
Sbjct: 141 LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIA 200
Query: 106 ET 107
T
Sbjct: 201 GT 202
>sp|Q3SZ20|GLYM_BOVIN Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus
GN=SHMT2 PE=2 SV=1
Length = 504
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 89/138 (64%), Gaps = 27/138 (19%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + +DEIE++ Q+R+L+AF+LDP QWG NVQPYSGSPAN A YT L
Sbjct: 104 RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMG 163
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
+ISATSIFFES+PYK+N +TGLIDYD+LA +ARLFKPRLIIA
Sbjct: 164 LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIA 223
Query: 106 ETIEDLKLLTKVLLEETS 123
T +L+ + E
Sbjct: 224 GTSAYARLIDYARMREVC 241
>sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens
GN=SHMT2 PE=1 SV=3
Length = 504
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 90/138 (65%), Gaps = 27/138 (19%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + +DEIE++ Q+R+L+AF+LDP QWG NVQPYSGSPAN AVYT L
Sbjct: 104 RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG 163
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
+ISATSIFFES+PYK+N +TGLIDY++LA +ARLF+PRLIIA
Sbjct: 164 LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 223
Query: 106 ETIEDLKLLTKVLLEETS 123
T +L+ + E
Sbjct: 224 GTSAYARLIDYARMREVC 241
>sp|P34896|GLYC_HUMAN Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1
PE=1 SV=1
Length = 483
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 81 RYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 140
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+PYKVN +TG I+YD+L E+ARLF P+LIIA
Sbjct: 141 LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIA 200
Query: 106 ET 107
T
Sbjct: 201 GT 202
>sp|Q5RFK5|GLYC_PONAB Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1
PE=2 SV=1
Length = 483
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 83/122 (68%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 81 RYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 140
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+PYKVN +TG I+YD+L E+ARLF P+LIIA
Sbjct: 141 LDLPDGGHLTHGFMTGKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIA 200
Query: 106 ET 107
T
Sbjct: 201 GT 202
>sp|P14519|GLYM_RABIT Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus
cuniculus GN=SHMT2 PE=1 SV=2
Length = 504
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 89/138 (64%), Gaps = 27/138 (19%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + +DEIE++ Q+R+L+AF+LDP QWG NVQPYSGSPAN A YT L
Sbjct: 104 RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMG 163
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
++SATSIFFES+PYK+N +TGLIDY++LA +ARLF+PRLIIA
Sbjct: 164 LDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIA 223
Query: 106 ETIEDLKLLTKVLLEETS 123
T +L+ + E
Sbjct: 224 GTSAYARLIDYARMREVC 241
>sp|Q5E9P9|GLYC_BOVIN Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1
PE=2 SV=3
Length = 484
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 82/122 (67%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E++ Q+R+L+ + LD + WG NVQPYSGSPANFAVYT L
Sbjct: 81 RYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 140
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+PYKVN +TG I+YD+L E+ARLF PRLIIA
Sbjct: 141 LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIA 200
Query: 106 ET 107
T
Sbjct: 201 GT 202
>sp|P50431|GLYC_MOUSE Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1
PE=1 SV=3
Length = 478
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 83/122 (68%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +FIDE+E++ Q+R+L+A++LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 75 RYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 134
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+PYKV ETG I+YD+L E+A LF P+LIIA
Sbjct: 135 LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIA 194
Query: 106 ET 107
T
Sbjct: 195 GT 196
>sp|P07511|GLYC_RABIT Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus
GN=SHMT1 PE=1 SV=2
Length = 484
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 81/122 (66%), Gaps = 27/122 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L
Sbjct: 81 RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 140
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISATSIFFES+ YKVN +TG IDYD+L E+ARLF P+LIIA
Sbjct: 141 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 200
Query: 106 ET 107
T
Sbjct: 201 GT 202
>sp|P50432|GLYC_CAEEL Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32
PE=1 SV=2
Length = 507
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 80/120 (66%), Gaps = 27/120 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGGN+FID++E++ Q+R+L+ F LDP +WG NVQP SGSPANFAVYT +
Sbjct: 107 RYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMG 166
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
K+SATS FF+SLPYKV+ TGLIDYDKL ++A LF+P+ IIA
Sbjct: 167 LDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIA 226
>sp|Q60V73|GLYC_CAEBR Serine hydroxymethyltransferase OS=Caenorhabditis briggsae
GN=mel-32 PE=3 SV=3
Length = 511
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 81/120 (67%), Gaps = 27/120 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGGN+FID++EI+ Q+R+L+ F LDP +WG NVQ SGSPANFAVYT L
Sbjct: 111 RYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMG 170
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
K+SATS FF+S+PYKV+ ++GLIDYDKL E+A LF+P+++IA
Sbjct: 171 LDLPDGGHLTHGFFTPARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIA 230
>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis
thaliana GN=SHM1 PE=1 SV=1
Length = 517
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 78/121 (64%), Gaps = 27/121 (22%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN++ID E + Q+R+L+AF LDPE+WG NVQP SGSPANF VYT L
Sbjct: 109 ARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIM 168
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA SIFFE++PY+++ TG IDYD++ +SA LF+P+LI+
Sbjct: 169 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIV 228
Query: 105 A 105
A
Sbjct: 229 A 229
>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria
pringlei PE=2 SV=1
Length = 517
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 77/121 (63%), Gaps = 27/121 (22%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN++ID E + Q+R+L+AF LDP +WG NVQP SGSPANF VYT L
Sbjct: 110 ARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIM 169
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA SIFFE++PY++N TG IDYD+L +SA LF+P+LI+
Sbjct: 170 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 229
Query: 105 A 105
A
Sbjct: 230 A 230
>sp|P34898|GLYC_NEUCR Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=for PE=3 SV=2
Length = 480
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 82/130 (63%), Gaps = 27/130 (20%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGNQ IDEIE++ Q R+L+AF+LDP+QWG NVQ SGSPAN VY +
Sbjct: 72 ARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLM 131
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA S +FE++PY+VN +TGLIDYD L ++A+LF+P++++
Sbjct: 132 GLDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLV 191
Query: 105 AETIEDLKLL 114
A T +L+
Sbjct: 192 AGTSAYCRLI 201
>sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum
PE=2 SV=1
Length = 518
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 77/121 (63%), Gaps = 27/121 (22%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN++ID E + Q+R+L+AF LDP +WG NVQP SGSPANF VYT L
Sbjct: 110 ARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIM 169
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA SIFFE++PY+++ TG IDYD+L +SA LF+P+LI+
Sbjct: 170 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIV 229
Query: 105 A 105
A
Sbjct: 230 A 230
>sp|O13972|GLYD_SCHPO Probable serine hydroxymethyltransferase, cytosolic
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC24C9.12c PE=3 SV=1
Length = 467
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 39/197 (19%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN+FID+IE + Q+R+L AFNLDP +WG NVQ SGSPAN VY +
Sbjct: 66 ARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLM 125
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA S +FES+PY+V+ TGLIDYD L A+LF+P++++
Sbjct: 126 GLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILV 185
Query: 105 AETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSGRLRWAGHVQRREEDS 164
A T +L+ + R+I D N VV L AG + E +
Sbjct: 186 AGTSAYCRLIDYARM-----------RQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYA 234
Query: 165 NIRSIWEHQPEGRRPRG 181
++ + H+ R PRG
Sbjct: 235 DVVTTTTHK-SLRGPRG 250
>sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum
PE=1 SV=1
Length = 518
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 77/121 (63%), Gaps = 27/121 (22%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN++ID E + Q+R+L+AF LDP +WG NVQP SGSP+NF VYT L
Sbjct: 110 ARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIM 169
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA SIFFE++PY+++ TG IDYD+L +SA LF+P+LI+
Sbjct: 170 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIV 229
Query: 105 A 105
A
Sbjct: 230 A 230
>sp|Q54Z26|GLYC1_DICDI Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum
GN=shmt1 PE=1 SV=1
Length = 457
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 78/120 (65%), Gaps = 28/120 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG + +DE+E + Q+R+LKAF LD +WG NVQPYSGSPANFAVYT L
Sbjct: 65 RYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMG 124
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISA+SIFFES+PY++ + GLIDY +L E+A LFKP+LII+
Sbjct: 125 LDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGAD-GLIDYQRLEENALLFKPKLIIS 183
>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria
pringlei PE=2 SV=1
Length = 517
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 27/121 (22%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN++ID E + Q+R+L+AF LD +WG NVQP SGSPANF VYT L
Sbjct: 110 ARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIM 169
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA SIFFE++PY++N TG IDYD+L +SA LF+P+LI+
Sbjct: 170 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 229
Query: 105 A 105
A
Sbjct: 230 A 230
>sp|Q54EW1|GLYC2_DICDI Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum
GN=shmt2 PE=3 SV=1
Length = 481
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 80/121 (66%), Gaps = 28/121 (23%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN+ +D++E + +R+L+ FNL+PE+WG NVQPYSGS ANFA +TGL
Sbjct: 88 ARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIM 147
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISATSIFFES+PY+VN ETG +DY+K+ +A LF+P+L+I
Sbjct: 148 GLDLPSGGHLTHGYQTDKKKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLI 206
Query: 105 A 105
A
Sbjct: 207 A 207
>sp|P37291|GLYC_YEAST Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SHM2 PE=1
SV=2
Length = 469
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 101/197 (51%), Gaps = 39/197 (19%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN+ ID +EI+ QQR+LKAF++ P++WG NVQ SGSPAN VY +
Sbjct: 71 ARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLM 130
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA S +FES PY+VN ETG+IDYD L ++A L++P++++
Sbjct: 131 GLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLV 190
Query: 105 AETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSGRLRWAGHVQRREEDS 164
A T +L+ K REI D +V L AG + E +
Sbjct: 191 AGTSAYCRLID-----------YKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYA 239
Query: 165 NIRSIWEHQPEGRRPRG 181
+I + H+ R PRG
Sbjct: 240 DIVTTTTHK-SLRGPRG 255
>sp|O13426|GLYC_CANAL Serine hydroxymethyltransferase, cytosolic OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SHM2 PE=1 SV=4
Length = 470
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 39/197 (19%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN+ ID +E++ Q+R+LKAF L P++WG NVQ SGSPAN VY +
Sbjct: 72 ARYYGGNEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLM 131
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA S +FE++PY+V+ ETGLIDYD L ++A L++P++++
Sbjct: 132 GLDLPHGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLV 191
Query: 105 AETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSGRLRWAGHVQRREEDS 164
A T +L+ K REI D VV L AG + E +
Sbjct: 192 AGTSAYCRLID-----------YKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYA 240
Query: 165 NIRSIWEHQPEGRRPRG 181
+I + H+ R PRG
Sbjct: 241 DIVTTTTHK-SLRGPRG 256
>sp|Q6FUP6|GLYC_CANGA Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SHM2 PE=3 SV=1
Length = 469
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 100/197 (50%), Gaps = 39/197 (19%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN+ ID IE + QQR+L+AF++ P++WG NVQ SGSPAN VY L
Sbjct: 71 ARYYGGNEHIDRIERLCQQRALEAFHVTPDRWGVNVQTLSGSPANLQVYQALMKPHERLM 130
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA S +FES PY+VN ETG+IDYD L ++A L++P++++
Sbjct: 131 GLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKILV 190
Query: 105 AETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSGRLRWAGHVQRREEDS 164
A T +L+ K REI D +V L AG + E +
Sbjct: 191 AGTSAYCRLID-----------YKRMREIADKCGAYLMVDMAHISGLVAAGVIPSPFEYA 239
Query: 165 NIRSIWEHQPEGRRPRG 181
+I + H+ R PRG
Sbjct: 240 DIVTTTTHK-SLRGPRG 255
>sp|Q75BQ6|GLYC_ASHGO Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SHM2 PE=3 SV=2
Length = 469
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 39/197 (19%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGNQ ID +E++ Q+R+L+AF++ P++WG NVQ SGSPAN VY L
Sbjct: 71 ARYYGGNQHIDRMELLCQRRALEAFHVTPDRWGVNVQSLSGSPANLQVYQALMKPHERLM 130
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
KISA S +FES PY+V+ ETG+IDYD L ++A L++P++++
Sbjct: 131 GLHLPDGGHLSHGYQTETRKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILV 190
Query: 105 AETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSGRLRWAGHVQRREEDS 164
A T +L+ K REI D +V L AG + E +
Sbjct: 191 AGTSAYCRLID-----------YKRMREIADKVGAYLMVDMAHISGLVAAGVIPSPFEYA 239
Query: 165 NIRSIWEHQPEGRRPRG 181
+I + H+ R PRG
Sbjct: 240 DIVTTTTHK-SLRGPRG 255
>sp|Q6FQ44|GLYM_CANGA Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SHM1 PE=3 SV=1
Length = 485
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 28/123 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGGNQFID+ E + Q R+L + LDPE+WG NVQ SG+PAN Y
Sbjct: 82 RYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMG 141
Query: 61 ----------------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
+G KIS S +F ++PY VNTETG+IDYD LA +++LF+P++I+
Sbjct: 142 LDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKVIV 201
Query: 105 AET 107
A T
Sbjct: 202 AGT 204
>sp|O13425|GLYM_CANAX Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans
GN=SHM1 PE=3 SV=1
Length = 493
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 27/120 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGGN+ ID+ E + Q+R+L+AF LDP QWG NVQP SG+PAN Y+ +
Sbjct: 94 RYYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMG 153
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KIS S +F+++PY++N ETG+IDYD L ++A+LF+P++I+A
Sbjct: 154 LDLPHGGHLSHGYQTKTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVA 213
>sp|Q6CLQ5|GLYM_KLULA Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SHM1 PE=3 SV=1
Length = 498
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 28/121 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGGNQFID E + Q+R+L+ +NLDP+ WG NVQP SG+PAN Y
Sbjct: 96 RYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMG 155
Query: 61 ----------------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
+G KIS S +F+++PY V+++TG+IDYD L+++++LF+P++I+
Sbjct: 156 LDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQTGIIDYDFLSKTSKLFRPKVIV 215
Query: 105 A 105
A
Sbjct: 216 A 216
>sp|Q10104|GLYM_SCHPO Serine hydroxymethyltransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=shm2 PE=3 SV=2
Length = 488
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 98/197 (49%), Gaps = 39/197 (19%)
Query: 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------- 63
+YYGGN+FID+ E + Q R+L+AF+LD E+WG NVQP+SGSPAN Y +
Sbjct: 88 ARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLM 147
Query: 64 -------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
ISA S +F ++PY VN ETG+IDYD L ++A F+P++I+
Sbjct: 148 GLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIV 207
Query: 105 AETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSGRLRWAGHVQRREEDS 164
A +L+ K R+I ++ N + L AG + E +
Sbjct: 208 AGASAYARLVD-----------YKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYA 256
Query: 165 NIRSIWEHQPEGRRPRG 181
+I + H+ R PRG
Sbjct: 257 DIVTTTTHKSL-RGPRG 272
>sp|O62585|GLYC_ENCCU Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=SHMT-1 PE=3 SV=2
Length = 460
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 28/120 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG ++D IE++ Q+R+L+ F LDP+ WG NVQPYSGSPANFA+YT +
Sbjct: 69 RYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMG 128
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KISA+S++F+S PY V + GLIDY+ L ++ F P ++I
Sbjct: 129 LDLPSGGHLTHGYKTKTRKISASSVYFDSRPYTVGSN-GLIDYEGLEKTFTDFLPHILIC 187
>sp|Q758F0|GLYM_ASHGO Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SHM1 PE=3 SV=1
Length = 497
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 28/130 (21%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGGNQ+ID E + Q+R+L+ + LDP +WG NVQ SG+PAN Y+
Sbjct: 95 RYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMMG 154
Query: 62 -----------------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
G KIS S +F+++ Y+V+ TGL+DYD L+E+++LF+P++I+
Sbjct: 155 LDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVDPATGLVDYDTLSETSKLFRPKVIV 214
Query: 105 AETIEDLKLL 114
A T ++L
Sbjct: 215 AGTSAYARVL 224
>sp|P37292|GLYM_YEAST Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SHM1 PE=1
SV=2
Length = 490
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 76/140 (54%), Gaps = 28/140 (20%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGGN+ ID+ E + Q R+L+ + LDP +WG NVQP SG+PAN VY
Sbjct: 88 RYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMG 147
Query: 61 ----------------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
+G IS S +F+S+PY V+ TGLIDYD L A+ F+P++I+
Sbjct: 148 LDLPDGGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIV 207
Query: 105 AETIEDLKLLTKVLLEETSK 124
A T +L+ +E S+
Sbjct: 208 AGTSAYSRLIDYARFKEISQ 227
>sp|Q7S5N8|GLYM_NEUCR Putative serine hydroxymethyltransferase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU05805 PE=3 SV=1
Length = 527
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 27/136 (19%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGGN+FID E + Q R+L+ F LDP++WG NVQ SG+PAN VY+ L
Sbjct: 110 RYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMG 169
Query: 64 ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
KIS S +FE+LPY+++ +TG IDY+KL E A ++P++I+A
Sbjct: 170 LDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVA 229
Query: 106 ETIEDLKLLTKVLLEE 121
+L+ L E
Sbjct: 230 GASAYSRLIDYARLRE 245
>sp|A0LV49|GLYA_ACIC1 Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1
Length = 427
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YY G QFID+IE +A +R+ + F +D NVQPYSGSPAN A+Y L
Sbjct: 66 RYYEGQQFIDQIETIAIERAKQLFGVD----HANVQPYSGSPANLAIYLALLSPGDTVMG 121
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
+SAT I+F S+ Y V +TG ID+D++ E AR +P++I A
Sbjct: 122 MALPMGGHLTHGWPVSATGIWFRSVQYGVRRDTGRIDFDEVREVARRERPKVIFA 176
>sp|B3PN94|GLYA_MYCA5 Serine hydroxymethyltransferase OS=Mycoplasma arthritidis (strain
158L3-1) GN=glyA PE=3 SV=1
Length = 419
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +F+DEIE +AQ+R+ K FN NVQPYSGS AN A+Y
Sbjct: 60 RYYGGCEFVDEIEKIAQERACKLFNAKY----ANVQPYSGSVANAAIYMALLNPGDSVLG 115
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G +IS + IF++S Y VN + G++DYD++ + A+ KP++II
Sbjct: 116 LSLDSGGHLTHGYRISFSGIFYKSYTYTVN-QDGVLDYDEILKIAQEVKPKMIIC 169
>sp|Q04FR7|GLYA_OENOB Serine hydroxymethyltransferase OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=glyA PE=3 SV=1
Length = 414
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGGN++ID E +A +R+ + F + NVQP+SGS ANF Y
Sbjct: 58 RYYGGNEYIDIAENLAIERAKELFGVSY----ANVQPHSGSSANFEAYMAFLHPGDKILG 113
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G +S + +E+ YKV++ET L+DYD + + A+ FKP LIIA
Sbjct: 114 MNLDSGGHLTHGASVSFSGKMYEAQSYKVDSETELLDYDAILKQAKEFKPNLIIA 168
>sp|C5BS91|GLYA_TERTT Serine hydroxymethyltransferase OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=glyA PE=3 SV=1
Length = 422
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +++D++E +A +R+ F D NVQP+SGS AN AVY
Sbjct: 63 RYYGGCEYVDKVEELAIERAKALFGADY----ANVQPHSGSQANSAVYAALCAPGDTVLG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K++ + + ++ Y +N ETGL+DY+++A AR KP++I+A
Sbjct: 119 MSLDHGGHLTHGAKVNFSGKMYNAVQYGLNPETGLVDYEEIAALAREHKPKMIVA 173
>sp|Q8KC36|GLYA_CHLTE Serine hydroxymethyltransferase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=glyA PE=3 SV=1
Length = 440
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 32/117 (27%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGC---NVQPYSGSPANFAVY--------- 60
+YYGG +F+D E +A+ R+ K F GC NVQP+SGS AN AV
Sbjct: 61 RYYGGCEFVDVAENLARDRAKKLF-------GCEYVNVQPHSGSSANMAVLFAVLKPGDA 113
Query: 61 -------------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
G K++ + FF++ Y V+ ETG+ID +K+ E AR KP+LII
Sbjct: 114 IMGLDLSHGGHLTHGSKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMARRVKPKLII 170
>sp|Q3K5K9|GLYA3_PSEPF Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glyA3 PE=3 SV=1
Length = 417
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG + +D++E +A +R+ + F D NVQP+SGS AN AVY
Sbjct: 63 RYYGGCEHVDKVEALAIERAKQLFGADY----ANVQPHSGSSANSAVYLALLQAGDTILG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K+S++ + ++ Y ++T+TGLIDYD++ A KP++I+A
Sbjct: 119 MSLAHGGHLTHGAKVSSSGKLYNAVQYGIDTKTGLIDYDEVERLAVECKPKMIVA 173
>sp|Q21NP8|GLYA_SACD2 Serine hydroxymethyltransferase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=glyA PE=3 SV=1
Length = 420
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +++D+ E +A +R+ F D NVQP+SGS AN AVY
Sbjct: 63 RYYGGCEYVDKAEALAIERAKTLFGADY----ANVQPHSGSQANSAVYAALCSPGDTVLG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G +S + + ++ Y +N +TGL+DY+++A AR KP++I+A
Sbjct: 119 MSLAHGGHLTHGASVSFSGKMYNAVQYGINPDTGLVDYEEIANLAREHKPKMIVA 173
>sp|Q607U4|GLYA_METCA Serine hydroxymethyltransferase OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=glyA PE=3 SV=1
Length = 418
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +++D +E +A +R+ + F D NVQP+SGS AN AVY
Sbjct: 63 RYYGGCEYVDIVETLAIERAKRLFGADY----ANVQPHSGSQANAAVYMALLKPGDTVLG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K++ + + ++ Y +N ETG IDYD++ E AR +P++I+A
Sbjct: 119 MSLAHGGHLTHGAKVNFSGKIYNAVQYGLNPETGEIDYDQVDELAREHRPKMIVA 173
>sp|Q88R12|GLYA1_PSEPK Serine hydroxymethyltransferase 1 OS=Pseudomonas putida (strain
KT2440) GN=glyA1 PE=3 SV=1
Length = 417
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG + +D++E +A +R+ + F D NVQP+SGS AN AVY
Sbjct: 63 RYYGGCEHVDKVEALAIERAKQLFGADY----ANVQPHSGSSANGAVYLALLQAGDTILG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K+S++ + ++ Y ++T TGLIDYD++ A KP++I+A
Sbjct: 119 MSLAHGGHLTHGAKVSSSGKLYNAVQYGIDTNTGLIDYDEVERLAVEHKPKMIVA 173
>sp|Q6D246|GLYA1_ERWCT Serine hydroxymethyltransferase 1 OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glyA1
PE=3 SV=1
Length = 417
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
+YYGG +++D +E +A R+ F D NVQP+SGS ANFAVYT L
Sbjct: 63 RYYGGCEYVDIVEQLAIDRAKALFGADY----ANVQPHSGSQANFAVYTALLQPGDTILG 118
Query: 64 -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
++ + ++ +PY ++ E+G IDYD++AE AR +P++I+
Sbjct: 119 MNLAHGGHLTHGSPVNLSGKLYKVIPYGID-ESGKIDYDEMAELARTHQPKMIVG 172
>sp|Q03QY0|GLYA_LACBA Serine hydroxymethyltransferase OS=Lactobacillus brevis (strain
ATCC 367 / JCM 1170) GN=glyA PE=3 SV=1
Length = 413
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG Q+ID +E +A R+ K F + NVQP+SGS AN AVY
Sbjct: 58 RYYGGTQYIDVVEQLAIDRAKKLFGAEY----ANVQPHSGSQANQAVYAAFLKPGDTILG 113
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K++ + + S Y +N ET L+DYD + + AR KP+LI+A
Sbjct: 114 MGLDAGGHLTHGAKVNFSGKLYNSYSYALNPETELLDYDMIRDLARKVKPQLIVA 168
>sp|Q2NS25|GLYA_SODGM Serine hydroxymethyltransferase OS=Sodalis glossinidius (strain
morsitans) GN=glyA PE=3 SV=1
Length = 417
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 27/115 (23%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG +++D +E +A R+ F D NVQP+SGS ANFAVYT
Sbjct: 63 RYYGGCEYVDVVEQLAIDRAKALFGADY----ANVQPHSGSQANFAVYTTLLQPGDTVLG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G ++ + + +PY ++ E+G IDYD+LAE A+ +P++II
Sbjct: 119 MNLAHGGHLTHGSPVNFSGKLYNIVPYGID-ESGHIDYDQLAELAKTHQPKMIIG 172
>sp|C0QQE4|GLYA_PERMH Serine hydroxymethyltransferase OS=Persephonella marina (strain DSM
14350 / EX-H1) GN=glyA PE=3 SV=1
Length = 420
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A +R K + + NVQP+SGS AN AVY
Sbjct: 60 RYYGGCEYVDIVEDLAIERLKKIYGAEH----ANVQPHSGSQANQAVYFSQLQAGDTIMG 115
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K++ + I F ++ Y VN ET LIDYD++ + A+ KP++I+A
Sbjct: 116 MSLAHGGHLTHGAKVNLSGIVFNAVQYGVNPETELIDYDQVYKLAKEHKPKMIVA 170
>sp|Q0VMH4|GLYA_ALCBS Serine hydroxymethyltransferase OS=Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573) GN=glyA PE=3 SV=1
Length = 418
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKISATSIF- 71
+YYGG + +D +E +A R+ + F D W NVQP+SGS AN AVY + + ++
Sbjct: 63 RYYGGCENVDVVEQLAIDRACELFGAD---W-ANVQPHSGSQANGAVYMAMLKAGDTVLG 118
Query: 72 ---------------------FESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
+ ++ Y ++ ETGLIDYD++A AR KP++I+A
Sbjct: 119 MSLDAGGHLTHGAKPNFSGKTYNAVQYGLDNETGLIDYDQVASLAREHKPKMIVA 173
>sp|Q3B2I7|GLYA_PELLD Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM
273) GN=glyA PE=3 SV=1
Length = 440
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 32/118 (27%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGC---NVQPYSGSPANFAVY--------- 60
+YYGG +F+D E +A++R+ K F GC NVQP+SGS AN AV
Sbjct: 61 RYYGGCEFVDIAEDLARERARKLF-------GCEYVNVQPHSGSSANMAVLFSVLKPGDR 113
Query: 61 -TGLKIS-------ATSI-----FFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
GL +S +S+ F++ Y V+ ETG+ID +K+ E A FKPRLII
Sbjct: 114 IMGLDLSHGGHLTHGSSVNFSGQMFDARSYGVDRETGIIDMNKVEEMALDFKPRLIIC 171
>sp|B1I6M4|GLYA_DESAP Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain
MP104C) GN=glyA PE=3 SV=1
Length = 415
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 26/114 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E VA +R+ + F NVQP+SG+ AN A Y
Sbjct: 62 RYYGGCEYVDIVESVAIRRAKEIFG----AGHANVQPHSGAQANMAAYFAFLEPGDTIMG 117
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLII 104
G KI+ + +F +PY V ETG IDYD++ AR +P+LI+
Sbjct: 118 MRLAHGGHLTHGAKINFSGRYFRYVPYGVEEETGRIDYDRMHAIAREHRPKLIV 171
>sp|Q9HTE9|GLYA1_PSEAE Serine hydroxymethyltransferase 1 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glyA1
PE=3 SV=1
Length = 417
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYT----------- 61
+YYGG + +D++E +A R+ + F D NVQP+SGS AN AVY
Sbjct: 63 RYYGGCEHVDKVERLAIDRARQLFGADY----ANVQPHSGSSANAAVYLALLNAGDTILG 118
Query: 62 -----------GLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K+S++ + ++ Y ++T TGLIDYD++ A KP++I+A
Sbjct: 119 MSLAHGGHLTHGAKVSSSGKLYNAVQYGLDTATGLIDYDEVERLAVEHKPKMIVA 173
>sp|O66776|GLYA_AQUAE Serine hydroxymethyltransferase OS=Aquifex aeolicus (strain VF5)
GN=glyA PE=3 SV=1
Length = 428
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 26/115 (22%)
Query: 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
+YYGG +++D +E +A +R+ K F + NVQP+SGS AN AVY
Sbjct: 59 RYYGGCEYVDVVENLAIERAKKLFGAE----HANVQPHSGSQANMAVYFAVLNPGDTIMG 114
Query: 61 ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
G K++ + + + Y VN ET LIDYD+L + A+ KP+LI+
Sbjct: 115 MDLAHGGHLTHGAKVNFSGKLYNVIHYGVNPETELIDYDQLYKLAKEHKPKLIVG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,181,581
Number of Sequences: 539616
Number of extensions: 3729544
Number of successful extensions: 10950
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 340
Number of HSP's that attempted gapping in prelim test: 9097
Number of HSP's gapped (non-prelim): 844
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)