Query psy10666
Match_columns 240
No_of_seqs 240 out of 1650
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 15:29:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0112 GlyA Glycine/serine hy 100.0 1.7E-45 3.7E-50 339.0 11.6 174 6-196 55-251 (413)
2 KOG2467|consensus 100.0 1.2E-43 2.6E-48 323.8 8.0 139 6-149 69-234 (477)
3 PF00464 SHMT: Serine hydroxym 100.0 2E-39 4.2E-44 303.9 7.9 141 6-151 49-216 (399)
4 PLN02271 serine hydroxymethylt 100.0 2.8E-36 6.1E-41 291.1 9.3 139 6-149 177-343 (586)
5 PRK13580 serine hydroxymethylt 100.0 9.9E-31 2.1E-35 250.5 9.3 135 6-149 78-265 (493)
6 PLN03226 serine hydroxymethylt 99.9 1.3E-26 2.9E-31 222.3 9.2 139 6-149 63-228 (475)
7 PTZ00094 serine hydroxymethylt 99.8 1.2E-18 2.6E-23 165.8 9.8 136 7-148 64-226 (452)
8 PRK13034 serine hydroxymethylt 99.6 9.7E-15 2.1E-19 137.9 9.3 134 7-149 58-213 (416)
9 cd00378 SHMT Serine-glycine hy 99.2 5.8E-11 1.3E-15 110.2 9.8 131 7-146 49-203 (402)
10 PRK00011 glyA serine hydroxyme 99.1 1.9E-10 4.2E-15 107.6 9.5 131 7-146 55-207 (416)
11 PRK12566 glycine dehydrogenase 98.2 2E-06 4.4E-11 88.6 7.1 125 9-144 530-683 (954)
12 PRK13238 tnaA tryptophanase/L- 97.3 0.00069 1.5E-08 65.3 7.5 121 10-144 69-223 (460)
13 PLN03032 serine decarboxylase; 96.8 0.0045 9.8E-08 58.3 8.2 112 6-121 50-185 (374)
14 PF01041 DegT_DnrJ_EryC1: DegT 96.8 0.003 6.5E-08 58.5 6.9 112 18-145 24-153 (363)
15 cd00616 AHBA_syn 3-amino-5-hyd 96.8 0.0026 5.6E-08 57.5 6.3 110 19-144 18-145 (352)
16 PRK05367 glycine dehydrogenase 96.8 0.002 4.2E-08 67.5 6.0 113 23-145 542-683 (954)
17 TIGR00461 gcvP glycine dehydro 96.8 0.0025 5.4E-08 66.4 6.2 112 22-143 529-669 (939)
18 cd00615 Orn_deC_like Ornithine 96.7 0.0033 7E-08 56.5 6.2 108 26-142 62-193 (294)
19 PF01212 Beta_elim_lyase: Beta 96.7 0.0024 5.2E-08 58.1 5.3 122 13-146 23-172 (290)
20 cd00617 Tnase_like Tryptophana 96.7 0.0045 9.7E-08 59.4 7.3 123 11-144 45-198 (431)
21 PLN02414 glycine dehydrogenase 96.6 0.0069 1.5E-07 63.6 8.1 110 26-145 571-709 (993)
22 cd01494 AAT_I Aspartate aminot 96.6 0.0058 1.3E-07 48.4 5.9 106 28-143 5-133 (170)
23 PRK13237 tyrosine phenol-lyase 96.5 0.0061 1.3E-07 59.0 6.8 124 10-149 69-231 (460)
24 TIGR02539 SepCysS Sep-tRNA:Cys 96.4 0.012 2.5E-07 54.6 7.5 126 8-144 34-188 (370)
25 COG1003 GcvP Glycine cleavage 96.3 0.0089 1.9E-07 57.3 6.6 108 29-146 115-248 (496)
26 TIGR03588 PseC UDP-4-keto-6-de 96.3 0.011 2.5E-07 54.7 6.9 115 14-144 25-160 (380)
27 cd06451 AGAT_like Alanine-glyo 96.2 0.016 3.4E-07 52.8 7.4 113 21-141 30-163 (356)
28 TIGR01822 2am3keto_CoA 2-amino 96.2 0.013 2.7E-07 54.2 6.6 119 7-143 70-211 (393)
29 cd06450 DOPA_deC_like DOPA dec 96.0 0.023 4.9E-07 51.3 7.1 122 15-144 30-190 (345)
30 COG0399 WecE Predicted pyridox 96.0 0.016 3.5E-07 54.7 6.2 125 19-159 34-177 (374)
31 PF06838 Met_gamma_lyase: Meth 95.9 0.027 5.8E-07 53.1 7.2 106 22-137 57-195 (403)
32 PRK11658 UDP-4-amino-4-deoxy-L 95.8 0.015 3.4E-07 54.2 5.4 110 20-145 34-161 (379)
33 PRK07179 hypothetical protein; 95.7 0.033 7.1E-07 52.1 7.3 114 11-144 91-223 (407)
34 PRK09331 Sep-tRNA:Cys-tRNA syn 95.7 0.03 6.4E-07 52.3 6.8 111 24-144 64-200 (387)
35 TIGR02379 ECA_wecE TDP-4-keto- 95.4 0.038 8.2E-07 51.8 6.4 107 19-141 31-155 (376)
36 KOG1549|consensus 95.3 0.048 1E-06 52.2 6.9 129 5-146 69-225 (428)
37 TIGR02618 tyr_phenol_ly tyrosi 95.2 0.052 1.1E-06 52.5 6.7 118 11-144 63-216 (450)
38 PRK11706 TDP-4-oxo-6-deoxy-D-g 95.2 0.054 1.2E-06 50.3 6.7 112 14-141 26-155 (375)
39 cd06453 SufS_like Cysteine des 94.9 0.065 1.4E-06 49.0 6.3 111 21-141 41-178 (373)
40 PRK02769 histidine decarboxyla 94.6 0.13 2.9E-06 48.4 7.8 111 7-121 50-184 (380)
41 cd06502 TA_like Low-specificit 94.4 0.14 3.1E-06 45.9 7.3 81 15-106 28-134 (338)
42 PLN02263 serine decarboxylase 94.3 0.095 2.1E-06 51.0 6.1 98 21-121 131-252 (470)
43 cd06454 KBL_like KBL_like; thi 94.1 0.12 2.5E-06 46.6 6.0 100 27-142 50-172 (349)
44 TIGR03235 DNA_S_dndA cysteine 94.1 0.092 2E-06 47.9 5.3 126 7-144 26-180 (353)
45 TIGR03402 FeS_nifS cysteine de 94.0 0.16 3.5E-06 46.7 6.8 125 6-141 26-175 (379)
46 KOG2040|consensus 93.7 0.14 3.1E-06 51.6 6.2 106 30-146 589-724 (1001)
47 PRK02948 cysteine desulfurase; 93.6 0.13 2.8E-06 47.4 5.5 121 8-140 29-176 (381)
48 PLN02651 cysteine desulfurase 93.6 0.13 2.8E-06 47.3 5.5 109 23-142 43-178 (364)
49 TIGR03812 tyr_de_CO2_Arch tyro 93.3 0.3 6.6E-06 44.5 7.3 122 6-142 47-193 (373)
50 PRK07504 O-succinylhomoserine 93.2 0.19 4.1E-06 47.5 5.9 111 8-141 56-189 (398)
51 PRK15407 lipopolysaccharide bi 93.1 0.3 6.6E-06 46.8 7.3 122 21-158 65-213 (438)
52 PRK13520 L-tyrosine decarboxyl 93.1 0.21 4.5E-06 45.5 5.9 112 21-142 57-191 (371)
53 PRK06939 2-amino-3-ketobutyrat 93.0 0.29 6.3E-06 44.9 6.7 115 8-141 75-213 (397)
54 cd00614 CGS_like CGS_like: Cys 92.9 0.3 6.4E-06 45.4 6.7 104 17-141 38-164 (369)
55 COG4100 Cystathionine beta-lya 92.7 0.17 3.6E-06 47.0 4.5 97 32-134 74-203 (416)
56 PLN02409 serine--glyoxylate am 92.4 0.43 9.4E-06 44.8 7.2 113 22-140 41-177 (401)
57 COG2008 GLY1 Threonine aldolas 92.4 0.4 8.7E-06 44.8 6.8 126 10-146 26-177 (342)
58 TIGR03531 selenium_SpcS O-phos 92.3 0.49 1.1E-05 45.7 7.5 113 21-140 103-243 (444)
59 COG0076 GadB Glutamate decarbo 92.3 0.33 7.2E-06 47.1 6.4 113 21-140 99-245 (460)
60 cd06452 SepCysS Sep-tRNA:Cys-t 91.6 0.59 1.3E-05 42.8 7.0 103 29-142 50-179 (361)
61 TIGR01325 O_suc_HS_sulf O-succ 91.5 0.57 1.2E-05 43.8 6.8 109 9-140 46-177 (380)
62 TIGR02006 IscS cysteine desulf 91.3 0.37 8E-06 45.0 5.3 109 22-141 46-181 (402)
63 TIGR01977 am_tr_V_EF2568 cyste 91.2 0.62 1.3E-05 42.5 6.7 107 26-142 47-177 (376)
64 TIGR02326 transamin_PhnW 2-ami 91.2 0.83 1.8E-05 41.8 7.5 102 17-121 30-153 (363)
65 PRK04366 glycine dehydrogenase 91.1 0.57 1.2E-05 45.4 6.6 109 23-142 113-248 (481)
66 TIGR00858 bioF 8-amino-7-oxono 91.1 0.89 1.9E-05 40.9 7.4 97 30-142 68-186 (360)
67 PLN02721 threonine aldolase 90.9 0.75 1.6E-05 41.4 6.8 84 12-107 35-145 (353)
68 PRK08574 cystathionine gamma-s 90.9 0.24 5.3E-06 46.5 3.7 111 17-141 51-176 (385)
69 cd00609 AAT_like Aspartate ami 90.7 1.6 3.4E-05 38.7 8.5 106 12-121 29-156 (350)
70 TIGR01976 am_tr_V_VC1184 cyste 90.5 0.65 1.4E-05 42.9 6.2 109 22-140 59-194 (397)
71 PRK09082 methionine aminotrans 90.4 1.2 2.5E-05 41.4 7.7 90 15-106 63-170 (386)
72 COG0156 BioF 7-keto-8-aminopel 90.3 0.88 1.9E-05 43.3 6.8 125 7-147 71-216 (388)
73 PRK12414 putative aminotransfe 89.9 1.6 3.5E-05 40.5 8.3 91 14-106 61-169 (384)
74 PRK08134 O-acetylhomoserine am 89.7 0.81 1.8E-05 43.9 6.2 104 17-141 62-188 (433)
75 PF00282 Pyridoxal_deC: Pyrido 89.6 0.59 1.3E-05 43.9 5.1 115 18-139 74-231 (373)
76 PF02178 AT_hook: AT hook moti 89.3 0.17 3.6E-06 25.1 0.6 10 177-186 1-10 (13)
77 PLN02880 tyrosine decarboxylas 89.2 0.77 1.7E-05 44.8 5.8 116 20-141 119-278 (490)
78 cd00613 GDC-P Glycine cleavage 89.0 0.78 1.7E-05 42.3 5.4 112 21-141 62-198 (398)
79 COG1448 TyrB Aspartate/tyrosin 88.9 1.1 2.3E-05 42.6 6.2 112 11-127 61-196 (396)
80 PLN02242 methionine gamma-lyas 88.9 1.4 3E-05 42.0 7.2 113 15-141 70-202 (418)
81 PRK07309 aromatic amino acid a 88.8 5.1 0.00011 37.2 10.8 92 14-106 62-173 (391)
82 PRK08361 aspartate aminotransf 88.8 4.6 9.9E-05 37.4 10.4 91 14-107 65-174 (391)
83 TIGR01825 gly_Cac_T_rel pyrido 88.6 0.63 1.4E-05 42.7 4.5 107 24-141 79-202 (385)
84 PF00266 Aminotran_5: Aminotra 88.6 2 4.3E-05 39.4 7.8 115 21-145 41-182 (371)
85 PRK05937 8-amino-7-oxononanoat 88.5 1.4 3.1E-05 40.7 6.8 121 7-146 43-187 (370)
86 PRK05613 O-acetylhomoserine am 88.4 0.95 2.1E-05 43.5 5.7 101 28-144 74-197 (437)
87 COG1104 NifS Cysteine sulfinat 88.4 0.94 2E-05 43.1 5.5 130 7-146 29-185 (386)
88 TIGR01979 sufS cysteine desulf 88.2 1.3 2.7E-05 41.1 6.2 105 27-141 66-198 (403)
89 PRK14012 cysteine desulfurase; 87.7 1.7 3.8E-05 40.5 6.9 103 28-141 54-183 (404)
90 PRK10874 cysteine sulfinate de 87.6 1.9 4E-05 40.1 7.0 113 17-141 58-199 (401)
91 PRK08133 O-succinylhomoserine 87.6 1.7 3.6E-05 40.9 6.8 99 21-140 63-184 (390)
92 PRK08776 cystathionine gamma-s 87.3 1.4 3E-05 41.9 6.0 97 30-141 67-184 (405)
93 TIGR01788 Glu-decarb-GAD gluta 87.1 1.6 3.5E-05 41.9 6.4 98 22-121 79-210 (431)
94 PF01276 OKR_DC_1: Orn/Lys/Arg 87.1 0.61 1.3E-05 44.8 3.5 105 27-141 70-206 (417)
95 PRK13479 2-aminoethylphosphona 87.0 2.5 5.5E-05 38.6 7.4 101 18-121 33-155 (368)
96 PRK07777 aminotransferase; Val 86.9 3.4 7.3E-05 38.2 8.3 90 14-106 56-166 (387)
97 PLN02855 Bifunctional selenocy 86.9 2.1 4.5E-05 40.2 7.0 116 15-141 69-212 (424)
98 PRK07503 methionine gamma-lyas 86.7 1.7 3.8E-05 41.0 6.3 108 19-141 65-189 (403)
99 PLN02590 probable tyrosine dec 86.6 2.2 4.9E-05 42.3 7.3 115 20-140 167-325 (539)
100 TIGR01437 selA_rel uncharacter 86.6 2.5 5.3E-05 39.3 7.2 107 21-141 43-188 (363)
101 TIGR03392 FeS_syn_CsdA cystein 86.4 2.5 5.5E-05 39.1 7.2 105 26-140 63-195 (398)
102 TIGR01821 5aminolev_synth 5-am 85.8 1.7 3.7E-05 40.5 5.7 99 30-144 97-219 (402)
103 TIGR01328 met_gam_lyase methio 85.7 2.6 5.5E-05 39.7 6.9 105 17-142 57-184 (391)
104 TIGR03301 PhnW-AepZ 2-aminoeth 85.7 3.5 7.5E-05 37.0 7.5 99 19-121 28-149 (355)
105 PRK06702 O-acetylhomoserine am 85.6 0.65 1.4E-05 44.7 2.8 108 17-139 59-184 (432)
106 PRK09064 5-aminolevulinate syn 85.5 3.3 7.2E-05 38.5 7.5 105 23-144 92-220 (407)
107 PRK05958 8-amino-7-oxononanoat 85.5 2.7 5.9E-05 38.2 6.8 98 28-141 89-207 (385)
108 PRK05968 hypothetical protein; 85.4 3.6 7.8E-05 38.7 7.7 101 19-141 63-186 (389)
109 PRK07811 cystathionine gamma-s 85.2 2.1 4.6E-05 40.2 6.1 108 19-141 61-185 (388)
110 PRK10534 L-threonine aldolase; 85.1 4.5 9.7E-05 36.4 8.0 99 13-121 28-151 (333)
111 PRK07550 hypothetical protein; 84.9 9.7 0.00021 35.1 10.3 90 15-107 63-171 (386)
112 PRK06767 methionine gamma-lyas 84.7 3.1 6.8E-05 38.9 6.9 110 17-141 59-185 (386)
113 PLN00175 aminotransferase fami 84.6 4.9 0.00011 37.9 8.3 95 14-110 86-198 (413)
114 smart00384 AT_hook DNA binding 84.5 0.52 1.1E-05 27.7 1.0 14 177-190 1-14 (26)
115 PRK09295 bifunctional cysteine 84.2 1.9 4E-05 40.2 5.2 116 14-141 59-203 (406)
116 COG0520 csdA Selenocysteine ly 84.0 3.1 6.7E-05 39.7 6.7 115 17-141 60-201 (405)
117 PRK07812 O-acetylhomoserine am 84.0 2.4 5.2E-05 40.7 6.0 106 18-141 68-194 (436)
118 PRK08912 hypothetical protein; 83.6 12 0.00027 34.4 10.4 91 15-107 59-167 (387)
119 PRK13578 ornithine decarboxyla 83.6 1.6 3.5E-05 44.7 4.8 102 27-141 178-320 (720)
120 TIGR03799 NOD_PanD_pyr putativ 82.8 3.1 6.7E-05 41.1 6.3 116 20-141 126-304 (522)
121 TIGR01440 conserved hypothetic 82.5 0.75 1.6E-05 38.9 1.6 81 15-103 65-165 (172)
122 TIGR01326 OAH_OAS_sulfhy OAH/O 82.4 2.5 5.5E-05 40.1 5.4 95 29-140 63-180 (418)
123 PLN03227 serine palmitoyltrans 82.4 4.1 8.9E-05 38.2 6.8 47 8-63 31-78 (392)
124 PRK07810 O-succinylhomoserine 82.2 3.5 7.7E-05 39.0 6.3 103 17-140 68-193 (403)
125 PRK08363 alanine aminotransfer 81.6 11 0.00024 35.0 9.3 91 13-106 64-173 (398)
126 PRK07050 cystathionine beta-ly 81.5 5.6 0.00012 37.5 7.3 104 17-141 63-189 (394)
127 PRK08249 cystathionine gamma-s 81.0 3.9 8.4E-05 38.7 6.1 110 17-141 62-188 (398)
128 PRK06836 aspartate aminotransf 80.7 13 0.00028 34.6 9.4 50 72-122 142-193 (394)
129 PRK13393 5-aminolevulinate syn 80.4 4.4 9.5E-05 37.9 6.2 100 30-145 97-220 (406)
130 PRK13690 hypothetical protein; 80.3 0.99 2.1E-05 38.5 1.6 83 15-105 72-174 (184)
131 PRK06176 cystathionine gamma-s 79.8 6 0.00013 37.1 6.9 116 8-140 41-172 (380)
132 PRK05994 O-acetylhomoserine am 79.7 5.2 0.00011 38.2 6.5 95 30-141 70-187 (427)
133 PRK04870 histidinol-phosphate 78.9 9.9 0.00021 34.6 7.9 85 33-121 73-177 (356)
134 TIGR01324 cysta_beta_ly_B cyst 78.8 5.2 0.00011 37.6 6.1 109 17-142 48-175 (377)
135 COG1167 ARO8 Transcriptional r 78.7 9.3 0.0002 36.8 8.0 79 24-108 138-235 (459)
136 PRK06434 cystathionine gamma-l 78.6 13 0.00028 35.2 8.7 38 17-63 62-99 (384)
137 PRK07671 cystathionine beta-ly 78.3 7.7 0.00017 36.3 7.1 110 8-140 41-172 (377)
138 PRK07324 transaminase; Validat 78.0 9.9 0.00022 35.1 7.7 75 46-121 82-177 (373)
139 PRK00451 glycine dehydrogenase 77.9 5.5 0.00012 37.6 6.1 85 30-121 119-227 (447)
140 PRK05942 aspartate aminotransf 77.9 20 0.00042 33.3 9.7 89 15-106 69-177 (394)
141 TIGR01141 hisC histidinol-phos 77.9 6.8 0.00015 35.4 6.4 87 29-121 60-166 (346)
142 PRK15029 arginine decarboxylas 77.8 4 8.6E-05 42.2 5.3 103 27-142 209-351 (755)
143 COG1168 MalY Bifunctional PLP- 77.6 12 0.00027 35.6 8.1 76 72-156 129-208 (388)
144 PLN02955 8-amino-7-oxononanoat 77.2 12 0.00027 36.6 8.3 118 8-146 135-293 (476)
145 PRK06108 aspartate aminotransf 76.5 16 0.00036 33.3 8.7 88 15-107 57-166 (382)
146 PRK08248 O-acetylhomoserine am 76.3 6.5 0.00014 37.7 6.1 102 18-140 63-187 (431)
147 PRK07683 aminotransferase A; V 76.1 15 0.00032 34.0 8.3 89 15-107 61-169 (387)
148 PRK15400 lysine decarboxylase 75.7 5.7 0.00012 40.8 5.8 90 27-121 199-320 (714)
149 PLN02483 serine palmitoyltrans 75.5 8.9 0.00019 37.3 6.9 44 11-63 137-181 (489)
150 PRK05939 hypothetical protein; 75.2 8.9 0.00019 36.2 6.7 103 17-140 45-169 (397)
151 PRK08861 cystathionine gamma-s 75.2 5.7 0.00012 37.5 5.3 105 18-143 52-179 (388)
152 COG1751 Uncharacterized conser 75.1 12 0.00025 31.6 6.4 84 15-107 6-90 (186)
153 PRK13392 5-aminolevulinate syn 74.9 9.8 0.00021 35.5 6.8 100 30-145 98-221 (410)
154 PTZ00433 tyrosine aminotransfe 73.8 24 0.00053 33.0 9.2 63 46-109 106-187 (412)
155 TIGR00474 selA seryl-tRNA(sec) 73.4 6.5 0.00014 38.1 5.3 99 27-139 126-252 (454)
156 TIGR01814 kynureninase kynuren 73.3 6.6 0.00014 36.7 5.2 57 83-144 153-213 (406)
157 PLN02822 serine palmitoyltrans 72.4 11 0.00025 36.5 6.8 48 8-63 142-189 (481)
158 PRK06234 methionine gamma-lyas 72.1 10 0.00023 35.7 6.3 104 17-141 62-190 (400)
159 TIGR02617 tnaA_trp_ase tryptop 71.8 10 0.00022 37.0 6.2 44 11-63 66-109 (467)
160 PRK07366 succinyldiaminopimela 70.9 42 0.00091 30.9 10.0 86 22-111 71-177 (388)
161 PF00155 Aminotran_1_2: Aminot 70.6 24 0.00053 31.8 8.2 104 15-121 40-172 (363)
162 PRK08068 transaminase; Reviewe 70.6 41 0.00088 31.1 9.8 97 21-121 72-191 (389)
163 PRK05957 aspartate aminotransf 70.3 14 0.00031 34.2 6.8 88 21-111 67-172 (389)
164 TIGR03537 DapC succinyldiamino 70.3 50 0.0011 30.0 10.2 91 15-109 32-146 (350)
165 PRK14807 histidinol-phosphate 70.2 16 0.00034 33.4 6.9 69 34-107 70-156 (351)
166 TIGR01329 cysta_beta_ly_E cyst 70.1 12 0.00026 35.0 6.2 94 31-141 55-170 (378)
167 PRK08247 cystathionine gamma-s 69.4 28 0.00062 32.2 8.5 101 19-140 52-174 (366)
168 KOG1412|consensus 69.0 13 0.00029 34.8 6.0 90 24-113 76-190 (410)
169 PRK08064 cystathionine beta-ly 68.7 13 0.00028 34.9 6.1 101 19-140 54-176 (390)
170 PRK02610 histidinol-phosphate 68.3 22 0.00049 32.7 7.6 40 72-111 138-180 (374)
171 PRK04311 selenocysteine syntha 68.0 13 0.00028 36.2 6.0 99 27-139 131-257 (464)
172 PTZ00377 alanine aminotransfer 67.6 34 0.00073 32.9 8.9 90 15-106 111-225 (481)
173 PLN03026 histidinol-phosphate 67.4 15 0.00033 34.1 6.2 87 30-121 93-199 (380)
174 TIGR03403 nifS_epsilon cystein 67.2 12 0.00027 34.3 5.6 122 7-140 27-178 (382)
175 PLN02656 tyrosine transaminase 66.9 29 0.00062 32.5 8.0 89 15-106 69-176 (409)
176 PRK07337 aminotransferase; Val 65.9 43 0.00094 30.8 8.9 88 15-105 63-169 (388)
177 COG1982 LdcC Arginine/lysine/o 65.8 12 0.00027 37.3 5.5 88 27-121 74-189 (557)
178 cd00610 OAT_like Acetyl ornith 65.7 14 0.00029 34.1 5.5 83 23-108 79-200 (413)
179 PRK03321 putative aminotransfe 65.6 15 0.00032 33.4 5.6 85 31-121 65-169 (352)
180 PRK07269 cystathionine gamma-s 64.3 12 0.00025 35.0 4.8 107 18-140 53-174 (364)
181 PF01053 Cys_Met_Meta_PP: Cys/ 64.1 11 0.00023 35.9 4.5 105 17-138 53-177 (386)
182 PRK15399 lysine decarboxylase 63.4 18 0.0004 37.2 6.4 87 27-121 199-320 (713)
183 PLN02368 alanine transaminase 63.1 82 0.0018 29.8 10.4 106 14-121 102-234 (407)
184 PRK06107 aspartate aminotransf 62.7 41 0.0009 31.2 8.3 89 15-106 66-173 (402)
185 PRK04781 histidinol-phosphate 62.4 24 0.00053 32.4 6.6 84 34-121 70-176 (364)
186 TIGR03540 DapC_direct LL-diami 62.3 67 0.0015 29.4 9.5 84 21-107 69-172 (383)
187 PLN02231 alanine transaminase 61.9 39 0.00084 33.4 8.2 88 15-106 164-278 (534)
188 TIGR03811 tyr_de_CO2_Ent tyros 61.8 56 0.0012 33.0 9.4 40 20-62 120-159 (608)
189 PLN02376 1-aminocyclopropane-1 61.3 85 0.0018 30.6 10.4 111 8-122 83-224 (496)
190 PRK15481 transcriptional regul 61.2 37 0.0008 31.9 7.7 58 46-106 143-218 (431)
191 PRK06084 O-acetylhomoserine am 61.1 23 0.00049 33.9 6.2 105 21-141 60-182 (425)
192 KOG1368|consensus 61.0 19 0.00041 33.7 5.4 131 2-143 39-199 (384)
193 PRK06460 hypothetical protein; 60.5 18 0.00038 33.8 5.3 94 30-140 52-168 (376)
194 PRK07049 methionine gamma-lyas 60.4 78 0.0017 30.2 9.8 87 21-121 85-198 (427)
195 TIGR03801 asp_4_decarbox aspar 59.5 50 0.0011 32.7 8.5 110 12-122 122-265 (521)
196 PRK07682 hypothetical protein; 59.5 59 0.0013 29.8 8.5 88 15-105 53-160 (378)
197 PLN02450 1-aminocyclopropane-1 59.3 93 0.002 29.9 10.2 101 21-125 88-219 (468)
198 PRK08045 cystathionine gamma-s 58.6 26 0.00057 32.9 6.1 100 21-141 54-176 (386)
199 TIGR03576 pyridox_MJ0158 pyrid 58.6 9.4 0.0002 35.3 3.1 37 23-63 54-91 (346)
200 PRK06207 aspartate aminotransf 58.5 1.1E+02 0.0024 28.5 10.4 89 21-111 80-190 (405)
201 PRK06290 aspartate aminotransf 58.4 1.4E+02 0.0031 28.0 11.1 97 21-121 83-203 (410)
202 PRK03317 histidinol-phosphate 58.2 62 0.0014 29.5 8.5 95 22-121 68-184 (368)
203 PRK08960 hypothetical protein; 58.2 77 0.0017 29.2 9.2 83 21-107 71-174 (387)
204 PRK09265 aminotransferase AlaT 57.8 76 0.0016 29.5 9.1 63 46-109 97-178 (404)
205 TIGR03538 DapC_gpp succinyldia 56.6 1.3E+02 0.0029 27.6 10.5 93 14-107 59-173 (393)
206 PRK09147 succinyldiaminopimela 56.2 1.2E+02 0.0027 27.9 10.2 34 72-106 139-173 (396)
207 TIGR02080 O_succ_thio_ly O-suc 55.8 24 0.00052 33.1 5.4 107 17-141 49-175 (382)
208 COG0436 Aspartate/tyrosine/aro 55.6 99 0.0021 29.2 9.5 105 13-121 60-187 (393)
209 PRK05166 histidinol-phosphate 54.7 49 0.0011 30.3 7.2 84 32-121 80-183 (371)
210 TIGR01265 tyr_nico_aTase tyros 54.5 1.1E+02 0.0023 28.5 9.5 64 47-111 99-181 (403)
211 PRK06348 aspartate aminotransf 53.9 1E+02 0.0022 28.4 9.2 88 14-106 61-169 (384)
212 PRK05764 aspartate aminotransf 53.5 75 0.0016 29.1 8.2 89 15-106 64-171 (393)
213 PLN02607 1-aminocyclopropane-1 53.3 1.5E+02 0.0033 28.3 10.5 108 14-125 90-228 (447)
214 PRK00854 rocD ornithine--oxo-a 52.0 35 0.00075 31.6 5.8 27 32-63 92-118 (401)
215 PRK02731 histidinol-phosphate 51.3 46 0.00099 30.2 6.4 83 32-121 76-178 (367)
216 PRK06225 aspartate aminotransf 51.2 51 0.0011 30.2 6.7 72 30-106 73-164 (380)
217 PRK08636 aspartate aminotransf 51.1 1.6E+02 0.0035 27.3 10.2 105 15-121 67-199 (403)
218 PF14639 YqgF: Holliday-juncti 51.1 18 0.00039 29.8 3.3 44 65-108 26-72 (150)
219 PRK09276 LL-diaminopimelate am 50.3 1.6E+02 0.0034 27.0 9.8 103 15-121 65-190 (385)
220 PRK09275 aspartate aminotransf 49.3 1E+02 0.0022 30.7 8.7 102 21-123 137-267 (527)
221 PF05570 DUF765: Circovirus pr 48.0 15 0.00032 21.6 1.6 20 163-182 8-27 (29)
222 PRK00950 histidinol-phosphate 47.6 40 0.00087 30.5 5.4 84 32-121 78-182 (361)
223 COG0075 Serine-pyruvate aminot 46.3 53 0.0011 31.4 6.0 92 26-121 41-155 (383)
224 PRK08153 histidinol-phosphate 46.0 43 0.00093 30.8 5.3 66 35-106 79-162 (369)
225 PLN00145 tyrosine/nicotianamin 44.8 1.1E+02 0.0024 29.0 8.1 75 46-121 119-214 (430)
226 PF02310 B12-binding: B12 bind 44.6 27 0.00059 26.4 3.2 32 72-108 29-60 (121)
227 KOG1411|consensus 44.6 1E+02 0.0022 29.5 7.4 86 28-113 101-210 (427)
228 PLN02509 cystathionine beta-ly 44.5 54 0.0012 31.9 6.0 107 17-144 131-259 (464)
229 PRK01278 argD acetylornithine 44.0 48 0.001 30.6 5.4 23 86-109 163-185 (389)
230 PF07521 RMMBL: RNA-metabolisi 42.3 61 0.0013 20.7 4.1 23 83-105 15-37 (43)
231 PRK05967 cystathionine beta-ly 42.3 82 0.0018 30.0 6.7 104 16-140 61-187 (395)
232 PRK01533 histidinol-phosphate 42.1 1.2E+02 0.0027 27.9 7.8 80 35-121 76-175 (366)
233 COG5012 Predicted cobalamin bi 41.0 29 0.00062 30.8 3.1 45 72-121 133-177 (227)
234 PTZ00125 ornithine aminotransf 40.3 49 0.0011 30.5 4.8 35 24-63 74-108 (400)
235 PRK06855 aminotransferase; Val 39.0 2.8E+02 0.0062 26.1 9.9 35 72-106 142-178 (433)
236 cd00611 PSAT_like Phosphoserin 38.9 55 0.0012 30.0 4.9 41 22-63 43-83 (355)
237 PF01994 Trm56: tRNA ribose 2' 38.6 15 0.00033 29.4 1.0 21 41-62 68-90 (120)
238 PRK01688 histidinol-phosphate 38.5 1E+02 0.0022 28.1 6.6 81 34-121 68-169 (351)
239 cd02067 B12-binding B12 bindin 38.3 85 0.0018 23.9 5.2 41 72-117 28-68 (119)
240 PRK13355 bifunctional HTH-doma 37.2 3E+02 0.0064 26.7 9.9 65 46-111 210-293 (517)
241 COG3033 TnaA Tryptophanase [Am 37.0 2.3E+02 0.005 27.4 8.6 79 11-101 71-184 (471)
242 TIGR02370 pyl_corrinoid methyl 36.9 75 0.0016 27.0 5.1 42 72-118 113-154 (197)
243 cd02070 corrinoid_protein_B12- 36.4 79 0.0017 26.8 5.1 43 72-119 111-153 (201)
244 TIGR01264 tyr_amTase_E tyrosin 36.3 85 0.0018 29.1 5.7 64 46-110 97-179 (401)
245 PRK07681 aspartate aminotransf 35.3 3.5E+02 0.0076 24.9 9.7 34 72-106 139-173 (399)
246 PRK06358 threonine-phosphate d 34.9 1.2E+02 0.0026 27.6 6.5 71 34-110 65-152 (354)
247 PRK09028 cystathionine beta-ly 34.5 1.3E+02 0.0028 28.6 6.7 103 21-140 63-184 (394)
248 cd02072 Glm_B12_BD B12 binding 33.6 1.1E+02 0.0024 24.6 5.2 40 72-116 28-67 (128)
249 PRK02797 4-alpha-L-fucosyltran 32.8 61 0.0013 30.3 4.0 41 7-63 182-223 (322)
250 COG4475 Uncharacterized protei 32.8 25 0.00055 29.6 1.4 89 14-110 69-177 (180)
251 PRK08175 aminotransferase; Val 32.7 4E+02 0.0086 24.5 10.4 48 72-121 137-188 (395)
252 PF02670 DXP_reductoisom: 1-de 32.2 49 0.0011 26.7 3.0 22 86-107 34-55 (129)
253 PLN02724 Molybdenum cofactor s 32.2 1.7E+02 0.0036 30.5 7.6 56 6-63 62-117 (805)
254 PRK07505 hypothetical protein; 32.0 1.9E+02 0.0041 26.8 7.4 50 86-141 167-218 (402)
255 KOG0053|consensus 31.7 58 0.0013 31.4 3.8 105 17-138 75-198 (409)
256 PLN02187 rooty/superroot1 31.6 2.4E+02 0.0053 27.0 8.2 63 46-108 133-214 (462)
257 KOG0259|consensus 31.6 62 0.0013 31.2 3.9 64 46-109 128-210 (447)
258 PRK02261 methylaspartate mutas 31.5 1.2E+02 0.0025 24.4 5.1 40 72-116 32-71 (137)
259 TIGR01501 MthylAspMutase methy 31.5 1.2E+02 0.0026 24.5 5.2 31 72-107 30-60 (134)
260 PF13483 Lactamase_B_3: Beta-l 31.2 58 0.0013 26.2 3.3 30 74-104 131-160 (163)
261 KOG1138|consensus 31.1 50 0.0011 32.9 3.3 43 72-118 442-484 (653)
262 PRK03158 histidinol-phosphate 30.7 1.4E+02 0.0031 26.9 6.2 67 34-107 75-159 (359)
263 PRK08114 cystathionine beta-ly 30.5 2E+02 0.0043 27.4 7.2 113 17-144 60-191 (395)
264 cd00922 Cyt_c_Oxidase_IV Cytoc 30.4 25 0.00055 28.6 1.0 81 26-109 46-132 (136)
265 cd02069 methionine_synthase_B1 30.3 1.1E+02 0.0023 26.5 5.0 41 72-117 117-157 (213)
266 PRK03958 tRNA 2'-O-methylase; 29.4 2.3E+02 0.0049 24.2 6.7 72 28-112 46-117 (176)
267 cd07388 MPP_Tt1561 Thermus the 27.7 74 0.0016 27.9 3.6 24 84-107 164-187 (224)
268 PRK09257 aromatic amino acid a 26.8 79 0.0017 29.2 3.8 34 72-105 142-177 (396)
269 PF00582 Usp: Universal stress 25.9 87 0.0019 22.9 3.3 27 89-115 92-118 (140)
270 PF02844 GARS_N: Phosphoribosy 25.8 49 0.0011 25.6 1.8 27 85-111 48-74 (100)
271 PF13899 Thioredoxin_7: Thiore 25.7 63 0.0014 22.9 2.4 27 85-111 3-30 (82)
272 PTZ00376 aspartate aminotransf 25.4 2.9E+02 0.0062 25.7 7.3 29 72-100 146-175 (404)
273 COG0816 Predicted endonuclease 24.6 80 0.0017 25.9 3.0 22 86-107 40-61 (141)
274 PRK02936 argD acetylornithine 23.9 3E+02 0.0065 25.0 7.1 35 23-62 71-105 (377)
275 PRK04635 histidinol-phosphate 23.4 2.1E+02 0.0046 25.9 6.0 79 35-121 72-171 (354)
276 PRK02627 acetylornithine amino 23.3 3.3E+02 0.0071 24.8 7.2 29 30-63 88-116 (396)
277 PRK13397 3-deoxy-7-phosphohept 23.1 1.5E+02 0.0032 26.7 4.6 74 24-101 171-250 (250)
278 PLN00143 tyrosine/nicotianamin 23.0 3.8E+02 0.0082 25.0 7.7 37 72-108 143-180 (409)
279 PRK07568 aspartate aminotransf 22.9 5.2E+02 0.011 23.5 8.5 35 72-107 134-170 (397)
280 PRK05355 3-phosphoserine/phosp 22.6 1.1E+02 0.0024 28.4 3.9 45 17-63 43-87 (360)
281 cd01715 ETF_alpha The electron 22.3 89 0.0019 25.5 2.9 28 89-116 73-100 (168)
282 PF03652 UPF0081: Uncharacteri 21.8 85 0.0018 25.2 2.6 26 83-108 35-60 (135)
283 COG0001 HemL Glutamate-1-semia 21.5 4.5E+02 0.0099 25.6 7.9 35 23-63 93-129 (432)
284 PRK15118 universal stress glob 21.4 1E+02 0.0022 23.8 3.0 21 88-108 92-112 (144)
285 KOG1359|consensus 21.2 1.8E+02 0.0039 27.4 4.9 103 7-121 99-214 (417)
286 PF06925 MGDG_synth: Monogalac 21.2 83 0.0018 25.6 2.5 20 88-107 78-97 (169)
287 PRK08637 hypothetical protein; 20.5 1.3E+02 0.0029 27.7 4.0 33 72-104 116-150 (388)
288 PRK08056 threonine-phosphate d 20.4 3.3E+02 0.0071 24.7 6.5 71 35-111 67-154 (356)
289 cd02071 MM_CoA_mut_B12_BD meth 20.2 2.4E+02 0.0053 21.7 4.9 34 72-110 28-61 (122)
No 1
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-45 Score=338.96 Aligned_cols=174 Identities=30% Similarity=0.427 Sum_probs=151.3
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------------------
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL---------------------- 63 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al---------------------- 63 (240)
++||||+||||||+|+|++|+||++|||+||+|+| |||||||||+||+|||+||
T Consensus 55 AEGyPgkRyYgGce~VD~vE~laierak~LFga~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~ 130 (413)
T COG0112 55 AEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS 130 (413)
T ss_pred ccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC
Confidence 57999999999999999999999999999999999 8999999999999999999
Q ss_pred ccCcccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchh
Q psy10666 64 KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVV 143 (240)
Q Consensus 64 ~~s~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il 143 (240)
++|++|++|++++||||++|+.||||+++++|+++||||||+|+|+|+|++|+++++| ++...+....+|++||.
T Consensus 131 ~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~r~id~~~~re-----Iad~VGA~L~~DmAHia 205 (413)
T COG0112 131 PVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFRE-----IADEVGAYLMVDMAHVA 205 (413)
T ss_pred CCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccccccccCHHHHHH-----HHHHhCceEEehHHHHH
Confidence 4667789999999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred hhhhccceeeeccccccCCCchhhhhhh-hcCCCCCCCCCCCCccHHHHHHhch
Q psy10666 144 GEIKSGRLRWAGHVQRREEDSNIRSIWE-HQPEGRRPRGRPKNRWKDQVRKDMT 196 (240)
Q Consensus 144 ~~I~~rrl~WaGHV~R~~~~~~~k~v~~-~~~~gkR~rGRPrkrW~D~ik~d~~ 196 (240)
++|.++... +|-+....|++ ...+-+.|||.--....+.+.+.+.
T Consensus 206 GLVA~G~~p--------~P~~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin 251 (413)
T COG0112 206 GLIAGGVHP--------NPLPHADVVTTTTHKTLRGPRGGIILTNDEELAKKIN 251 (413)
T ss_pred HHHhcccCC--------CCCCccceEeCCcccCCCCCCceEEEeccHHHHHHhh
Confidence 999887432 22222333443 3468889999966666555555454
No 2
>KOG2467|consensus
Probab=100.00 E-value=1.2e-43 Score=323.83 Aligned_cols=139 Identities=52% Similarity=0.885 Sum_probs=130.6
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------------------
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL---------------------- 63 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al---------------------- 63 (240)
-+||||+|||||+||||+||.||++||.++|+++++.|||||||+|||+||++||+||
T Consensus 69 SEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy 148 (477)
T KOG2467|consen 69 SEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGY 148 (477)
T ss_pred ccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCcccccc
Confidence 4799999999999999999999999999999999999999999999999999999999
Q ss_pred -----ccCcccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhC
Q psy10666 64 -----KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYN 138 (240)
Q Consensus 64 -----~~s~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d 138 (240)
+||.++.||++.||.|||+||.||||++++.|..+||||||||.|+|+|.+||+++++ +.........+|
T Consensus 149 ~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~-----Iad~~gA~Lm~D 223 (477)
T KOG2467|consen 149 QTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRK-----IADKVGAYLMAD 223 (477)
T ss_pred ccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHH-----HHHhcCceeehh
Confidence 4677789999999999999999999999999999999999999999999999999988 666677778889
Q ss_pred CCchhhhhhcc
Q psy10666 139 EPDVVGEIKSG 149 (240)
Q Consensus 139 ~s~Il~~I~~r 149 (240)
++||.+++..+
T Consensus 224 MAHISgLVAA~ 234 (477)
T KOG2467|consen 224 MAHISGLVAAG 234 (477)
T ss_pred hhhHHHHHhcc
Confidence 99999988665
No 3
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=100.00 E-value=2e-39 Score=303.95 Aligned_cols=141 Identities=38% Similarity=0.637 Sum_probs=116.9
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------------ccC---
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------------KIS--- 66 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------------~~s--- 66 (240)
..||||+|||+||+++|+||.||++||++||+|+.++|+|||||+||++||++||+|| |+|
T Consensus 49 aeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~ 128 (399)
T PF00464_consen 49 AEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGS 128 (399)
T ss_dssp TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-
T ss_pred cccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccc
Confidence 4699999999999999999999999999999999999999999999999999999999 332
Q ss_pred --------cccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhC
Q psy10666 67 --------ATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYN 138 (240)
Q Consensus 67 --------~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d 138 (240)
.+|.+|++++|++|++++.||||+++++|+++||||||+|+|+|+|++|+++++| ++...+....+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~~~~d~~~~re-----Iad~vga~l~~D 203 (399)
T PF00464_consen 129 SVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYPRPIDFKRFRE-----IADEVGAYLMAD 203 (399)
T ss_dssp TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTSS---HHHHHH-----HHHHTT-EEEEE
T ss_pred cccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhccCccCHHHHHH-----HHHhcCcEEEec
Confidence 2556799999999999999999999999999999999999999999999999999 677778899999
Q ss_pred CCchhhhhhccce
Q psy10666 139 EPDVVGEIKSGRL 151 (240)
Q Consensus 139 ~s~Il~~I~~rrl 151 (240)
++|+.++|.++.+
T Consensus 204 ~sH~~GLIa~g~~ 216 (399)
T PF00464_consen 204 ISHIAGLIAGGLF 216 (399)
T ss_dssp -TTTHHHHHTTSS
T ss_pred ccccccceehhee
Confidence 9999999988744
No 4
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=2.8e-36 Score=291.06 Aligned_cols=139 Identities=44% Similarity=0.715 Sum_probs=130.3
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------------cc----
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------------KI---- 65 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------------~~---- 65 (240)
.+||||+|||+||++||+||.||++||++||+++|++|+|||||||||+||++||.|| |+
T Consensus 177 aEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~ 256 (586)
T PLN02271 177 SEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGY 256 (586)
T ss_pred CCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccc
Confidence 4799999999999999999999999999999999999999999999999999999999 32
Q ss_pred --------CcccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhh
Q psy10666 66 --------SATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLY 137 (240)
Q Consensus 66 --------s~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~ 137 (240)
+++|.+|++++|++|++++.||||++++++..+||||||+|.|+|++.+|++++++ +++..++...+
T Consensus 257 ~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~e-----IAdevGA~Lmv 331 (586)
T PLN02271 257 YTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQ-----IADKCGAVLMC 331 (586)
T ss_pred ccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHH-----HHHHcCCEEEE
Confidence 33467799999999999999999999999999999999999999999999999998 67778899999
Q ss_pred CCCchhhhhhcc
Q psy10666 138 NEPDVVGEIKSG 149 (240)
Q Consensus 138 d~s~Il~~I~~r 149 (240)
|++|+.++|..+
T Consensus 332 D~AH~aGLIa~g 343 (586)
T PLN02271 332 DMAHISGLVAAK 343 (586)
T ss_pred ECcccccccccC
Confidence 999999999776
No 5
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.97 E-value=9.9e-31 Score=250.47 Aligned_cols=135 Identities=25% Similarity=0.400 Sum_probs=122.9
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh--c-------------------
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--K------------------- 64 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al--~------------------- 64 (240)
.+||||+|||+||+++|+||.+|++||++||+|+| ||||||||++||++||.|| +
T Consensus 78 aeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~ 153 (493)
T PRK13580 78 AEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLT 153 (493)
T ss_pred cCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccc
Confidence 47999999999999999999999999999999999 8999999999999999987 2
Q ss_pred --------------------------------cCcccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccc
Q psy10666 65 --------------------------------ISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLK 112 (240)
Q Consensus 65 --------------------------------~s~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r 112 (240)
.+++|.+|++.+|++|++++.||||++++++.+++|++||+|.|+|++
T Consensus 154 ~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~ 233 (493)
T PRK13580 154 EEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPR 233 (493)
T ss_pred hhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCC
Confidence 112345699999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhhhhcc
Q psy10666 113 LLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIKSG 149 (240)
Q Consensus 113 ~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~I~~r 149 (240)
.+|+.++.+ +++..+....+|.+|..+.+..+
T Consensus 234 ~~dl~~i~e-----ia~~~gA~L~VD~AH~~Gligg~ 265 (493)
T PRK13580 234 RVNFAKLRE-----IADEVGAVLMVDMAHFAGLVAGK 265 (493)
T ss_pred CcCHHHHHH-----HHHHcCCEEEEECchhhceeccc
Confidence 999999998 66777888889999999998633
No 6
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.93 E-value=1.3e-26 Score=222.25 Aligned_cols=139 Identities=47% Similarity=0.798 Sum_probs=125.4
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------------ccC---
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------------KIS--- 66 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------------~~s--- 66 (240)
..||||.|||+||+++|+||++|++|++++|+++++.|.+||||+||++||++||.|| |.+
T Consensus 63 ~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~ 142 (475)
T PLN03226 63 SEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGY 142 (475)
T ss_pred cCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhh
Confidence 4699999999999999999999999999999999999999999999999999999999 122
Q ss_pred --------cccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhC
Q psy10666 67 --------ATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYN 138 (240)
Q Consensus 67 --------~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d 138 (240)
..+.+|++++|++|++++.||||++++++.+++||+||+|.|+|++..|++.+.+ .++..+....+|
T Consensus 143 ~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~-----ia~~~ga~LlvD 217 (475)
T PLN03226 143 QTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRK-----IADKVGALLMCD 217 (475)
T ss_pred hhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHH-----HHHHcCCEEEEE
Confidence 2234578889999999999999999999999999999999999999999999887 667777888899
Q ss_pred CCchhhhhhcc
Q psy10666 139 EPDVVGEIKSG 149 (240)
Q Consensus 139 ~s~Il~~I~~r 149 (240)
++|..+.+...
T Consensus 218 ~AH~~Gli~~~ 228 (475)
T PLN03226 218 MAHISGLVAAQ 228 (475)
T ss_pred chhhhCcccCC
Confidence 99999988654
No 7
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.77 E-value=1.2e-18 Score=165.79 Aligned_cols=136 Identities=49% Similarity=0.810 Sum_probs=119.4
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCc---------
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISA--------- 67 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~--------- 67 (240)
.|+||.+||.|++++|+||++|.++++++|++++++|.+|+||.||+.||++++.|| + ..+
T Consensus 64 ~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~ 143 (452)
T PTZ00094 64 EGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFY 143 (452)
T ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCccccccc
Confidence 499999999999999999999999999999999988999999999999999999998 1 111
Q ss_pred --------ccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 68 --------TSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 68 --------~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
.+..|++.+|++|++ +.||+|++++.+++++|++|+++.|.+....|+..+.+ +++..++...+|+
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~-g~id~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~-----i~~~~ga~l~vDa 217 (452)
T PTZ00094 144 TAKKKVSATSIYFESLPYQVNEK-GLIDYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFRE-----ICDSVGAYLMADI 217 (452)
T ss_pred ccccccccceeeeeeeecccCCC-CCcCHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHH-----HHHHcCCEEEEec
Confidence 123377788999875 89999999999998999999999999999999999987 5667788888999
Q ss_pred Cchhhhhhc
Q psy10666 140 PDVVGEIKS 148 (240)
Q Consensus 140 s~Il~~I~~ 148 (240)
+|.++.+..
T Consensus 218 aq~~G~i~~ 226 (452)
T PTZ00094 218 AHTSGLVAA 226 (452)
T ss_pred cchhccccC
Confidence 998888854
No 8
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.56 E-value=9.7e-15 Score=137.89 Aligned_cols=134 Identities=36% Similarity=0.530 Sum_probs=113.8
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCccc-------
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATS------- 69 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g------- 69 (240)
.|++|.|+|+|+++++++|++|.++++++||+++ +.+.+.||+.||++++.+| ..++.+
T Consensus 58 ~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~ 133 (416)
T PRK13034 58 EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAK 133 (416)
T ss_pred CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCc
Confidence 5899999999999999999999999999999998 8999999999999999999 112222
Q ss_pred -----ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 70 -----IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 70 -----~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
..++...|++|+.++.+|++++++.+..++||+|+++.++|+...|+..+.+ .++..++....|.+|..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~-----la~~~g~~livD~Aha~G 208 (416)
T PRK13034 134 VSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFRE-----IADEVGALLMVDMAHIAG 208 (416)
T ss_pred ceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHH-----HHHHcCCEEEEeCccccc
Confidence 2244468888888889999999999877899999998899999999999988 456667788889988777
Q ss_pred hhhcc
Q psy10666 145 EIKSG 149 (240)
Q Consensus 145 ~I~~r 149 (240)
.+..+
T Consensus 209 ~~~~g 213 (416)
T PRK13034 209 LVAAG 213 (416)
T ss_pred CcccC
Confidence 76543
No 9
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.21 E-value=5.8e-11 Score=110.16 Aligned_cols=131 Identities=40% Similarity=0.583 Sum_probs=103.5
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCccc-------
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATS------- 69 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g------- 69 (240)
.|.||.++|+|.+.++++|+++.++++++|++++ ++|.+.||+.|+.+++.+| ..++.+
T Consensus 49 ~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~----~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~ 124 (402)
T cd00378 49 EGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEY----ANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSF 124 (402)
T ss_pred CCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCc----eeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCcccccccc
Confidence 4899999999999999999999999999999998 6899999999999999998 111211
Q ss_pred -------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 70 -------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 70 -------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
..+..++++.+++++.||++++++.+...+|++|++..+.++...|+..+.+ .++..++....|.++.
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~-----l~~~~~~~li~D~a~~ 199 (402)
T cd00378 125 TKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFRE-----IADEVGAYLLVDMAHV 199 (402)
T ss_pred ccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHH-----HHHhcCCEEEEEccch
Confidence 1022333444443789999999999988899999998888887778887776 4556667777787776
Q ss_pred hhhh
Q psy10666 143 VGEI 146 (240)
Q Consensus 143 l~~I 146 (240)
.+.+
T Consensus 200 ~g~~ 203 (402)
T cd00378 200 AGLV 203 (402)
T ss_pred hhhh
Confidence 6554
No 10
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.13 E-value=1.9e-10 Score=107.56 Aligned_cols=131 Identities=32% Similarity=0.490 Sum_probs=104.9
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCcc--------
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISAT-------- 68 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~-------- 68 (240)
.|.|+.+|+.|.++++++|++|.+.++++|++++ ++|-+.|||.|+.+++.+| ..++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~----~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~ 130 (416)
T PRK00011 55 EGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEY----ANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSP 130 (416)
T ss_pred cCCCCccccccchHHHHHHHHHHHHHHHHhCCCc----eeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccc
Confidence 4889999999999999999999999999999998 6788889999999999988 11121
Q ss_pred ----cccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 69 ----SIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 69 ----g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
+...+++.++++++++.+|++++++.+.+.+|++|++..+.++...|+..+.+ .++..++....|.++..+
T Consensus 131 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~-----la~~~~~~livD~a~~~g 205 (416)
T PRK00011 131 VNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFRE-----IADEVGAYLMVDMAHIAG 205 (416)
T ss_pred cccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHH-----HHHHcCCEEEEECcchhc
Confidence 11246778888877789999999999888899999998788887778877766 445556666677776554
Q ss_pred hh
Q psy10666 145 EI 146 (240)
Q Consensus 145 ~I 146 (240)
.+
T Consensus 206 ~~ 207 (416)
T PRK00011 206 LV 207 (416)
T ss_pred cc
Confidence 44
No 11
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.24 E-value=2e-06 Score=88.58 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=91.3
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhcc---------------C---c-c-
Q psy10666 9 DEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKI---------------S---A-T- 68 (240)
Q Consensus 9 ~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~---------------s---~-~- 68 (240)
.|.+.....+-+.+.|++|. +.+++|||.++ +++||.||++|++|+++|++. + | +
T Consensus 530 hPyqp~e~sQG~lq~i~elq-~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN 604 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELE-AWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN 604 (954)
T ss_pred CCCCchhhhcCHHHHHHHHH-HHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC
Confidence 45555444666688888888 89999999999 899999999999999999711 1 1 0
Q ss_pred -----cccceeeeccccCCCcccChHHHHHHHHhhCCCEE---EEeccc-ccchhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 69 -----SIFFESLPYKVNTETGLIDYDKLAESARLFKPRLI---IAETIE-DLKLLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 69 -----g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLI---i~G~S~-y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
..-++++.+++|+ +|.+|.+++++++.++++++. +.-.+. -.++.|+.++.+ .++..++...+|.
T Consensus 605 pasa~~~GieVv~Vp~D~-~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~-----iah~~Galv~vDg 678 (954)
T PRK12566 605 PASAQMAGMRVVIVECDP-DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICE-----VVHQHGGQVYMDG 678 (954)
T ss_pred HHHHHHCCCEEEEeccCC-CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHH-----HHHHcCCEEEEEe
Confidence 1227899999984 689999999999998888874 222222 234556777776 5667777767777
Q ss_pred Cchhh
Q psy10666 140 PDVVG 144 (240)
Q Consensus 140 s~Il~ 144 (240)
++...
T Consensus 679 A~~~a 683 (954)
T PRK12566 679 ANLNA 683 (954)
T ss_pred eChhh
Confidence 66543
No 12
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.30 E-value=0.00069 Score=65.33 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=79.9
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----cc-----Cccc-------ccce
Q psy10666 10 EEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----KI-----SATS-------IFFE 73 (240)
Q Consensus 10 pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----~~-----s~~g-------~~~~ 73 (240)
.|...|+++..+.++|+ .++++|+.++ + +..+||+.|+.+++.+| .+ ++.. .-.+
T Consensus 69 ~g~~~Y~~~~g~~~Lre----aia~~~~~~~----v-v~t~ggt~A~~~~~~all~pGDVii~~p~~~~~~~~i~~~G~~ 139 (460)
T PRK13238 69 RGDEAYAGSRSYYRLED----AVKDIFGYPY----T-IPTHQGRAAEQILFPVLIKKGDVVPSNYHFDTTRAHIELNGAT 139 (460)
T ss_pred hCCcccCCCCCHHHHHH----HHHHHhCCCc----E-EECCCHHHHHHHHHHHhCCCCCEEccCCcccchHHHHHHcCCE
Confidence 35678999999999887 4556788887 4 78889999999999998 10 1110 0134
Q ss_pred eeeccccC---------CCcccChHHHHHHHHhh---CCCEEEEeccccc---chh---hhhhhhhhhHHHHHhhHHHHh
Q psy10666 74 SLPYKVNT---------ETGLIDYDKLAESARLF---KPRLIIAETIEDL---KLL---TKVLLEETSKWRIKHNREIRD 135 (240)
Q Consensus 74 ~~~y~~d~---------~~~~ID~d~~~~~a~~~---kPkLIi~G~S~y~---r~~---d~~~l~E~~~w~~~~N~eIr~ 135 (240)
.+..++++ -++.+|.|++++.+.++ ++++|++...+-+ .++ ++..+.+ .++..++..
T Consensus 140 ~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~-----ia~~~gi~l 214 (460)
T PRK13238 140 AVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYE-----IAKKYGIPV 214 (460)
T ss_pred EEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHH-----HHHHcCCEE
Confidence 56666643 23569999999999874 6788887544333 223 3344444 345567777
Q ss_pred hhCCCchhh
Q psy10666 136 LYNEPDVVG 144 (240)
Q Consensus 136 ~~d~s~Il~ 144 (240)
..|.+++.+
T Consensus 215 i~Daa~~~e 223 (460)
T PRK13238 215 VIDAARFAE 223 (460)
T ss_pred EEECcchhh
Confidence 777766553
No 13
>PLN03032 serine decarboxylase; Provisional
Probab=96.85 E-value=0.0045 Score=58.32 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=76.5
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCC-cccccccCCChhHHHHHHHhhc------------cCccc---
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQ-WGCNVQPYSGSPANFAVYTGLK------------ISATS--- 69 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~-w~~nvqp~SG~~An~av~~al~------------~s~~g--- 69 (240)
..|.|...+.-|.+ .-++|+-+++...+||+++.++ ||+ + --+||.||+.++.+.+ ..|.+
T Consensus 50 ~~gnP~s~~~~g~~-a~~~e~~v~~~ia~llg~~~~~~~G~-f-TsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~k 126 (374)
T PLN03032 50 NLGDPFIESNYGVH-SRQFEVGVLDWFARLWELEKDEYWGY-I-TTCGTEGNLHGILVGREVFPDGILYASRESHYSVFK 126 (374)
T ss_pred CCCCCcccCCCCcc-HHHHHHHHHHHHHHHhCCCCccCCEE-E-eCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHH
Confidence 35777775544544 8899999999999999998654 432 2 3588999988776531 11111
Q ss_pred --c-c-ceeeeccccCCCcccChHHHHHHHHhh--CCCEEEE--ecccccchhhhhhhhh
Q psy10666 70 --I-F-FESLPYKVNTETGLIDYDKLAESARLF--KPRLIIA--ETIEDLKLLTKVLLEE 121 (240)
Q Consensus 70 --~-~-~~~~~y~~d~~~~~ID~d~~~~~a~~~--kPkLIi~--G~S~y~r~~d~~~l~E 121 (240)
. + ..+...|+|+ ++.||++++++.+.+. +|.+|++ |.+..--.-|+.++.+
T Consensus 127 aa~~lg~~~~~V~~d~-~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~ 185 (374)
T PLN03032 127 AARMYRMEAVKVPTLP-SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILR 185 (374)
T ss_pred HHHHcCCCCeEeeeCC-CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHH
Confidence 1 1 4456678875 5899999999988764 6877766 5555545556777776
No 14
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=96.83 E-value=0.003 Score=58.49 Aligned_cols=112 Identities=16% Similarity=0.100 Sum_probs=73.7
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc-----------cCccc-------ccceeeeccc
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-----------ISATS-------IFFESLPYKV 79 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~-----------~s~~g-------~~~~~~~y~~ 79 (240)
..+++++|+ ..++.|+.+| -|-.-|||.|.++++.||. .++.+ .-++.+.+.+
T Consensus 24 g~~~~~fE~----~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 24 GPYVEEFEK----EFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp SHHHHHHHH----HHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred CHHHHHHHH----HHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEec
Confidence 356888875 4567799998 5788999999999999992 22221 2278999999
Q ss_pred cCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 80 NTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 80 d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
||+++.||.+.+++.+.... |. |+-...+-.+.|+..+.+ ..+..+|...-|+++-.+.
T Consensus 95 ~~~~~~id~~~~~~~i~~~t-~a-i~~~h~~G~~~d~~~i~~-----~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 95 DPETLNIDPEALEKAITPKT-KA-ILVVHLFGNPADMDAIRA-----IARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp ETTTSSB-HHHHHHHHHTTE-EE-EEEE-GGGB---HHHHHH-----HHHHTT-EEEEE-TTTTT-
T ss_pred cCCcCCcCHHHHHHHhccCc-cE-EEEecCCCCcccHHHHHH-----HHHHcCCcEEEccccccCc
Confidence 99999999999999876544 43 334445555567776666 4566777777777775543
No 15
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=96.83 E-value=0.0026 Score=57.51 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhccC-----------ccc-------ccceeeecccc
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKIS-----------ATS-------IFFESLPYKVN 80 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~s-----------~~g-------~~~~~~~y~~d 80 (240)
..++++|+ .+.++|++++ .+-..|||.|+.+++.++.+. +.+ .-+++..++++
T Consensus 18 ~~~~~~~~----~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 18 PKVREFEK----AFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred HHHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 44666665 4666788876 344559999999999988211 111 12678888998
Q ss_pred CCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 81 TETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 81 ~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
++++.+|.|.+++.+ ..++++|++- +.+-.+.|+.++.+ .++..++....|.++-.+
T Consensus 89 ~~~~~~d~~~l~~~i-~~~~~~v~~~-~~~G~~~~~~~i~~-----l~~~~~i~li~D~a~~~g 145 (352)
T cd00616 89 PDTYNIDPELIEAAI-TPRTKAIIPV-HLYGNPADMDAIMA-----IAKRHGLPVIEDAAQALG 145 (352)
T ss_pred CCcCCcCHHHHHHhc-CcCCeEEEEE-CCCCCcCCHHHHHH-----HHHHcCCeEEEECCCCCC
Confidence 767899999999876 4578888764 34555667776665 344556666667665443
No 16
>PRK05367 glycine dehydrogenase; Provisional
Probab=96.81 E-value=0.002 Score=67.47 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc---------------cC---cc-------cccceeeec
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK---------------IS---AT-------SIFFESLPY 77 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~---------------~s---~~-------g~~~~~~~y 77 (240)
+++.-.++.+++|||.+. +.+||.+|++||++.+++++ ++ |. ..-++++..
T Consensus 542 ~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v 617 (954)
T PRK05367 542 ELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVV 617 (954)
T ss_pred HHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEE
Confidence 566666799999999997 89999999999977776651 11 10 012788888
Q ss_pred cccCCCcccChHHHHHHHHhh--CCCEEEEecccccc--hhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 78 KVNTETGLIDYDKLAESARLF--KPRLIIAETIEDLK--LLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 78 ~~d~~~~~ID~d~~~~~a~~~--kPkLIi~G~S~y~r--~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
++|+ ++.+|.|++++.+..+ ++..|++-...... ..|+.++.+ .++..++...+|.++...+
T Consensus 618 ~~d~-~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~-----i~h~~G~~v~VDgA~~~al 683 (954)
T PRK05367 618 ACDE-NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICE-----IVHEHGGQVYLDGANMNAQ 683 (954)
T ss_pred CCCC-CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHH-----HHHHcCCEEEEECcChhhc
Confidence 8884 5899999999988876 44444444433333 357888887 5677777777888776443
No 17
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.76 E-value=0.0025 Score=66.41 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhcc-----------------Cccc--------ccceeee
Q psy10666 22 DEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKI-----------------SATS--------IFFESLP 76 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~-----------------s~~g--------~~~~~~~ 76 (240)
-+++.-.++-+++++|.+. +.+||-||++|+++++++.+. +..| .-++++.
T Consensus 529 lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~ 604 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVP 604 (939)
T ss_pred HHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEE
Confidence 3566666778899999996 899999999999988877711 1111 2278888
Q ss_pred ccccCCCcccChHHHHHHHHhh--CCCEEEEec-ccccchhh-hhhhhhhhHHHHHhhHHHHhhhCCCchh
Q psy10666 77 YKVNTETGLIDYDKLAESARLF--KPRLIIAET-IEDLKLLT-KVLLEETSKWRIKHNREIRDLYNEPDVV 143 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~--kPkLIi~G~-S~y~r~~d-~~~l~E~~~w~~~~N~eIr~~~d~s~Il 143 (240)
.|+| ++|.||.|++++++.++ ++++|++-. |.+--..| +.++.+ .++..+....+|.++..
T Consensus 605 V~~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~-----iah~~G~~v~VDgAq~~ 669 (939)
T TIGR00461 605 VNCD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACD-----IVHSFGGQVYLDGANMN 669 (939)
T ss_pred eccC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHH-----HHHHcCCEEEEEecChh
Confidence 8888 56899999999999874 677776644 44332224 777766 55666566666766643
No 18
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=96.75 E-value=0.0033 Score=56.52 Aligned_cols=108 Identities=16% Similarity=0.073 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCccc-----cc--ceeeeccccCCC-----
Q psy10666 26 IVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATS-----IF--FESLPYKVNTET----- 83 (240)
Q Consensus 26 ~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g-----~~--~~~~~y~~d~~~----- 83 (240)
.-+.+++.++|++++ +.+-.-++|.||.+++.++ ..+|.+ .+ .+.+..+.+.+.
T Consensus 62 ~~~~~~~A~~~ga~~----~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~ 137 (294)
T cd00615 62 KEAQELAARAFGAKH----TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIA 137 (294)
T ss_pred HHHHHHHHHHhCCCC----EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcC
Confidence 345667788999987 5666666788999999998 111111 00 223333333222
Q ss_pred cccChHHHHHHHHh-hCCCEEEEeccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 84 GLIDYDKLAESARL-FKPRLIIAETIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 84 ~~ID~d~~~~~a~~-~kPkLIi~G~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
+.||.+++++.+.+ .+|+++++-...|. ...|++++.+ .++..++...+|.++-
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~-----~~~~~g~~livDeA~~ 193 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVE-----EAHHRGLPVLVDEAHG 193 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHH-----HHHhcCCeEEEECcch
Confidence 47999999998876 46888777654543 4467776666 4455556666666554
No 19
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=96.74 E-value=0.0024 Score=58.11 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=82.2
Q ss_pred cccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-------------ccCcc--cc---c--c
Q psy10666 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------------KISAT--SI---F--F 72 (240)
Q Consensus 13 ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-------------~~s~~--g~---~--~ 72 (240)
--||+-.++.++|+ +++++||.+. + +=.+|||.||..++.++ |++.. |. + .
T Consensus 23 ~~Yg~D~~~~~l~~----~i~~l~g~e~----a-~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~ 93 (290)
T PF01212_consen 23 DAYGEDPTTARLEE----RIAELFGKEA----A-LFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGA 93 (290)
T ss_dssp CCTTSSHHHHHHHH----HHHHHHTSSE----E-EEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTC
T ss_pred cccCCChhHHHHHH----HHHHHcCCCE----E-EEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCc
Confidence 35999888888875 4567899997 3 45679999999999998 22111 11 1 4
Q ss_pred eeeeccccCCCcccChHHHHHHHHh-----hCCCEEEEeccccc---chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 73 ESLPYKVNTETGLIDYDKLAESARL-----FKPRLIIAETIEDL---KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 73 ~~~~y~~d~~~~~ID~d~~~~~a~~-----~kPkLIi~G~S~y~---r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
+.++.+-+ +++.+|.+++++.+.+ .+|++|.+..+... .++++.++++...+ .+..++....|.+-+..
T Consensus 94 ~~~~l~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~--a~~~gl~lhmDGARl~~ 170 (290)
T PF01212_consen 94 KLIPLPSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISEL--AREHGLPLHMDGARLAN 170 (290)
T ss_dssp EEEEEBEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHH--HHHHT-EEEEEETTHHH
T ss_pred EEEECCCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHH--HHhCceEEEEehhhHHH
Confidence 55665554 2389999999999998 67899999888885 56777777775444 45555666666665544
Q ss_pred hh
Q psy10666 145 EI 146 (240)
Q Consensus 145 ~I 146 (240)
-.
T Consensus 171 a~ 172 (290)
T PF01212_consen 171 AA 172 (290)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 20
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=96.72 E-value=0.0045 Score=59.40 Aligned_cols=123 Identities=14% Similarity=0.169 Sum_probs=78.3
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc----Cccc-------cccee
Q psy10666 11 EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI----SATS-------IFFES 74 (240)
Q Consensus 11 g~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~----s~~g-------~~~~~ 74 (240)
|.-.|+|...+.++|+- .++.|+.+| -|-.+||+.|+..++.++ .| ++.. .-...
T Consensus 45 gd~~Y~~~~g~~~Leea----ia~~~g~~~-----vv~t~~Gt~Al~la~~al~~pGD~V~~~~~f~~~~~~i~~~Ga~p 115 (431)
T cd00617 45 GDEAYAGSKSFYDLEDA----VQDLFGFKH-----IIPTHQGRGAENILFSILLKPGRTVPSNMHFDTTRGHIEANGAVP 115 (431)
T ss_pred CCCccCCCCCHHHHHHH----HHHHHCCCe-----EEEcCCHHHHHHHHHHHhCCCCCEEccCCcccchHHHHHhCCCEe
Confidence 34458888888888765 455689887 488999999999999998 12 1111 01455
Q ss_pred eeccccCC---------CcccChHHHHHHHHhh---CCCEEEEeccccc---chhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 75 LPYKVNTE---------TGLIDYDKLAESARLF---KPRLIIAETIEDL---KLLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 75 ~~y~~d~~---------~~~ID~d~~~~~a~~~---kPkLIi~G~S~y~---r~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
+.++++++ ++.+|.|++++.+.+. ++++|++..++.+ .+++...+++... .++..+|....|.
T Consensus 116 v~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~e--ia~~~gi~li~Da 193 (431)
T cd00617 116 VDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRE--LAHKYGIPVVLDA 193 (431)
T ss_pred EEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHH--HHHHcCCEEEEEc
Confidence 66666543 4669999999998765 4777777544443 3343333322111 3455566666676
Q ss_pred Cchhh
Q psy10666 140 PDVVG 144 (240)
Q Consensus 140 s~Il~ 144 (240)
+++.+
T Consensus 194 Ar~~~ 198 (431)
T cd00617 194 ARFAE 198 (431)
T ss_pred hhhHh
Confidence 66543
No 21
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=96.58 E-value=0.0069 Score=63.61 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=78.5
Q ss_pred HHHHHHHHhhcCCCCCCcccccccCCChh---HHHHHHHhhcc--------------Cccc--------ccceeeecccc
Q psy10666 26 IVAQQRSLKAFNLDPEQWGCNVQPYSGSP---ANFAVYTGLKI--------------SATS--------IFFESLPYKVN 80 (240)
Q Consensus 26 ~la~~r~~~lF~a~~~~w~~nvqp~SG~~---An~av~~al~~--------------s~~g--------~~~~~~~y~~d 80 (240)
.-+.+.++++||+++ |.+||.||++ |+..+..+++- +..+ .-++++..|+|
T Consensus 571 ~~~r~~la~i~g~~~----v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d 646 (993)
T PLN02414 571 EDLGDLLCEITGFDS----FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTD 646 (993)
T ss_pred HHHHHHHHHHhCCCe----EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccC
Confidence 457888999999988 9999999977 66666666610 1011 12788889998
Q ss_pred CCCcccChHHHHHHHHhhCC--CEEEE-ecccccch-hhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 81 TETGLIDYDKLAESARLFKP--RLIIA-ETIEDLKL-LTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 81 ~~~~~ID~d~~~~~a~~~kP--kLIi~-G~S~y~r~-~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
+++.+|.+++++++..+++ ++|++ -+|.+... .|+.++.+ .++..++...+|.++..+.
T Consensus 647 -~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~-----iah~~Galv~vDgAq~~a~ 709 (993)
T PLN02414 647 -AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICD-----IIHDNGGQVYMDGANMNAQ 709 (993)
T ss_pred -CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHH-----HHHHcCCEEEEEecCHHhc
Confidence 4689999999999987654 44444 45555544 45887877 5677777777787775544
No 22
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=96.56 E-value=0.0058 Score=48.43 Aligned_cols=106 Identities=19% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHhhc--CCCCCCcccccccCCChhHHHHHHHhhc-----c-----Cccc--------ccceeeeccccCCCc-cc
Q psy10666 28 AQQRSLKAF--NLDPEQWGCNVQPYSGSPANFAVYTGLK-----I-----SATS--------IFFESLPYKVNTETG-LI 86 (240)
Q Consensus 28 a~~r~~~lF--~a~~~~w~~nvqp~SG~~An~av~~al~-----~-----s~~g--------~~~~~~~y~~d~~~~-~I 86 (240)
+.+.++++| +.+. +.+.| |||.|+..++.++. + .+.+ ...++..++.++++. .+
T Consensus 5 ~~~~l~~~~~~~~~~----~~~~~-~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 79 (170)
T cd01494 5 LEEKLARLLQPGNDK----AVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGL 79 (170)
T ss_pred HHHHHHHHcCCCCCc----EEEeC-CcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccch
Confidence 346777889 5554 78888 99999999999981 0 1111 115677777765432 23
Q ss_pred ChHHHHHHHHhhCCCEEEEecccccc--hhhhhhhhhhhHHHHHhhHHHHhhhCCCchh
Q psy10666 87 DYDKLAESARLFKPRLIIAETIEDLK--LLTKVLLEETSKWRIKHNREIRDLYNEPDVV 143 (240)
Q Consensus 87 D~d~~~~~a~~~kPkLIi~G~S~y~r--~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il 143 (240)
|.+++++.+...+|+++++..+.++- ..|.+.+.+ ..+..++....|.++..
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~-----~~~~~~~~li~D~a~~~ 133 (170)
T cd01494 80 DVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRK-----IAKEYGILLLVDAASAG 133 (170)
T ss_pred hhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHH-----HHHHcCCEEEEeccccc
Confidence 33467777777899999998887764 345556655 33445555555655433
No 23
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=96.54 E-value=0.0061 Score=58.98 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-c-----------------cCccccc
Q psy10666 10 EEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K-----------------ISATSIF 71 (240)
Q Consensus 10 pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~-----------------~s~~g~~ 71 (240)
.|+--|+|...+.++|+-. +++||.+| -|-.+||+.|+...+... + +...|.
T Consensus 69 vGDd~Yagd~s~~~LE~~v----Ae~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~Vp~n~~f~Tt~ahI~~~Ga- 138 (460)
T PRK13237 69 IGDEAYAGSRNFYHLEETV----QEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYVPGNMYFTTTRYHQELNGG- 138 (460)
T ss_pred hcchhhcCCCcHHHHHHHH----HHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEECCccchHhhHHHHHhCCc-
Confidence 4667799999999998654 45799998 577799999999864432 1 111121
Q ss_pred ceeeec---------cccCCCcccChHHHHHHHHhhCCC---EEEEecccc---cchh---hhhhhhhhhHHHHHhhHHH
Q psy10666 72 FESLPY---------KVNTETGLIDYDKLAESARLFKPR---LIIAETIED---LKLL---TKVLLEETSKWRIKHNREI 133 (240)
Q Consensus 72 ~~~~~y---------~~d~~~~~ID~d~~~~~a~~~kPk---LIi~G~S~y---~r~~---d~~~l~E~~~w~~~~N~eI 133 (240)
.++.. ..+|.++.+|.+++++.+.+..|+ ||.+-..+. -.++ |+..+.+ ..+..+|
T Consensus 139 -~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~e-----lA~~~Gl 212 (460)
T PRK13237 139 -IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRE-----LCDKHGI 212 (460)
T ss_pred -EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHH-----HHHHcCC
Confidence 12222 234678999999999998875432 323222222 2333 5555555 5677788
Q ss_pred HhhhCCCchhh---hhhcc
Q psy10666 134 RDLYNEPDVVG---EIKSG 149 (240)
Q Consensus 134 r~~~d~s~Il~---~I~~r 149 (240)
....|.++..+ +|+.+
T Consensus 213 ~Vi~DaAra~gna~fI~~r 231 (460)
T PRK13237 213 KVFFDATRCVENAYFIKER 231 (460)
T ss_pred EEEEECcchhcChhhhccc
Confidence 88899999888 77554
No 24
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=96.38 E-value=0.012 Score=54.62 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=76.8
Q ss_pred CCCCCcccCCcc---cHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCcccc----
Q psy10666 8 SDEEGKYYGGNQ---FIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATSI---- 70 (240)
Q Consensus 8 g~pg~ryy~G~~---~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g~---- 70 (240)
|+.+.|+-+|.- +-..++.+ .+.+.+++|++. +.+ --||+.||.+++.+| ..+|.+.
T Consensus 34 ~~~~~~~~~g~~~~~~~~~~~~~-~e~lA~~~g~~~----~~i-~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~ 107 (370)
T TIGR02539 34 GYSVCDFCGGRLDQITKPPIHDF-LEDLAEFLGMDE----ARV-THGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAA 107 (370)
T ss_pred ccccccccccccccccchHHHHH-HHHHHHHhCCCc----eEE-ECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHH
Confidence 555666655542 01134444 344788899997 566 578899999999998 1111111
Q ss_pred -c--ceeeeccccCC-CcccChHHHHHHHHh------hCCCEEEEecc--cccchhhhhhhhhhhHHHHHhhHHHHhhhC
Q psy10666 71 -F--FESLPYKVNTE-TGLIDYDKLAESARL------FKPRLIIAETI--EDLKLLTKVLLEETSKWRIKHNREIRDLYN 138 (240)
Q Consensus 71 -~--~~~~~y~~d~~-~~~ID~d~~~~~a~~------~kPkLIi~G~S--~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d 138 (240)
. .++..+|.+++ ++.+|+|++++.+.. .+|++|++-.- .+--..|+..+.+ .++..++....|
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~-----la~~~~~~livD 182 (370)
T TIGR02539 108 ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAK-----VCREKGVPLLLN 182 (370)
T ss_pred HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHH-----HHHHcCCeEEEE
Confidence 1 45667777643 578999999998764 36788775422 2233455655555 344456666667
Q ss_pred CCchhh
Q psy10666 139 EPDVVG 144 (240)
Q Consensus 139 ~s~Il~ 144 (240)
.++..+
T Consensus 183 ea~~~g 188 (370)
T TIGR02539 183 CAYTVG 188 (370)
T ss_pred CccccC
Confidence 666554
No 25
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0089 Score=57.29 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----------------ccCccc------cc--ceeeeccccCCC
Q psy10666 29 QQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----------------KISATS------IF--FESLPYKVNTET 83 (240)
Q Consensus 29 ~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----------------~~s~~g------~~--~~~~~y~~d~~~ 83 (240)
.+-++++-|-+- |.+||-||++--++-++++ +.|..| .+ |+++..++|+ +
T Consensus 115 q~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~-~ 189 (496)
T COG1003 115 QEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE-N 189 (496)
T ss_pred HHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC-C
Confidence 345678889887 9999999999988888877 223333 22 9999999984 6
Q ss_pred cccChHHHHHHHHhhCCCEEEEeccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhhh
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAETIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEI 146 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~I 146 (240)
|.||+|.++..+.+.--.|.|.=+|.+- |.-++.++.+ ++++.+-..-+|.+.+..++
T Consensus 190 G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~-----ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 190 GNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICE-----IVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred CCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHH-----HHHHcCCEEEecCcchhhhh
Confidence 9999999999999666666666555543 7778888887 77888888889998866665
No 26
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=96.29 E-value=0.011 Score=54.70 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=74.9
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhccC-----------ccc-------ccceee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKIS-----------ATS-------IFFESL 75 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~s-----------~~g-------~~~~~~ 75 (240)
|+.| ..++++|+ ...++|++++ .|-..||+.|+..++.+|.+. +.+ .-.+++
T Consensus 25 ~~~g-~~~~~le~----~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~ 94 (380)
T TIGR03588 25 LTQG-PTVPAFEE----ALAEYVGAKY-----AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVD 94 (380)
T ss_pred ccCC-hhHHHHHH----HHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEE
Confidence 3334 33555554 4667789987 344559999999999988211 111 126788
Q ss_pred eccccCCCcccChHHHHHHHHh---hCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 76 PYKVNTETGLIDYDKLAESARL---FKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~---~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
.++++++++.+|.+++++.+.+ .++++|+.-. .+..+.|+..+.+ .++..++....|.++-.+
T Consensus 95 ~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~-~~G~~~~~~~i~~-----l~~~~~~~lI~D~a~a~g 160 (380)
T TIGR03588 95 FVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD-FAGKSVDMQAIAA-----LAKKHGLKIIEDASHALG 160 (380)
T ss_pred EEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC-CCCccCCHHHHHH-----HHHHcCCEEEEECCCccc
Confidence 8899888889999999998875 4678877422 2344566666665 344445666667666544
No 27
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=96.23 E-value=0.016 Score=52.78 Aligned_cols=113 Identities=10% Similarity=-0.062 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCccc---------ccceeeeccccC
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATS---------IFFESLPYKVNT 81 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g---------~~~~~~~y~~d~ 81 (240)
.+++..-+.+.++++|+++..+ +-+-.-||+.|+..++.++ . .++.+ .-.++..+|+++
T Consensus 30 ~~~~~~~~~~~la~~~g~~~~~--~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 107 (356)
T cd06451 30 FLALMDEILEGLRYVFQTENGL--TFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPW 107 (356)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--EEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCC
Confidence 3344455668889999984310 3457789999999999888 1 11111 115677778875
Q ss_pred CCcccChHHHHHHHHhhCCCEEEEeccc--ccchhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 82 ETGLIDYDKLAESARLFKPRLIIAETIE--DLKLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 82 ~~~~ID~d~~~~~a~~~kPkLIi~G~S~--y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
++.+|.+++++.+..++|++|++-... +-...|+..+.+ .++..++....|..+
T Consensus 108 -~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~-----~a~~~~~~li~D~~~ 163 (356)
T cd06451 108 -GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGA-----LAKKHDALLIVDAVS 163 (356)
T ss_pred -CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHH-----HHHhcCCEEEEeeeh
Confidence 478999999999887899988774433 335567666665 334445555555544
No 28
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=96.18 E-value=0.013 Score=54.22 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCCCCCcccCCc-ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCcccc-----
Q psy10666 7 SSDEEGKYYGGN-QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATSI----- 70 (240)
Q Consensus 7 ~g~pg~ryy~G~-~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g~----- 70 (240)
.|||+.+++.|. +...++| +.+.+++++++ + +-.-||+.||.+++.+| ...+.+.
T Consensus 70 ~~~~~s~~~~G~~~~~~~le----~~ia~~~g~~~----~-ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~ 140 (393)
T TIGR01822 70 FGMSSVRFICGTQDIHKELE----AKIAAFLGTED----T-ILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVR 140 (393)
T ss_pred CCCCCcCcccCChHHHHHHH----HHHHHHhCCCc----E-EEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH
Confidence 488999999884 3344555 55668889886 3 33359999999999998 1111111
Q ss_pred cceeeeccccCCCcccChHHHHHHHHhh-----CCCEEEEeccc--ccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchh
Q psy10666 71 FFESLPYKVNTETGLIDYDKLAESARLF-----KPRLIIAETIE--DLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVV 143 (240)
Q Consensus 71 ~~~~~~y~~d~~~~~ID~d~~~~~a~~~-----kPkLIi~G~S~--y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il 143 (240)
+.....+.+ ..+|.|++++.+.+. ++++|+++... .-...|+..+.+ .++..++....|..+-.
T Consensus 141 ~~~~~~~~~----~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~-----la~~~~~~li~De~~~~ 211 (393)
T TIGR01822 141 LCKAKRYRY----ANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICD-----LADKYDALVMVDECHAT 211 (393)
T ss_pred hcCCceEEe----CCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHH-----HHHHcCCEEEEECCccc
Confidence 111111111 248999999888753 77888877532 223356666655 34445566666666533
No 29
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=95.98 E-value=0.023 Score=51.33 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=80.2
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCC-CCCcccccccCCChhHHHHHHHhhcc---------------------C---ccc
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLD-PEQWGCNVQPYSGSPANFAVYTGLKI---------------------S---ATS 69 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~-~~~w~~nvqp~SG~~An~av~~al~~---------------------s---~~g 69 (240)
|+-...+.++|+.+++...++||++ ... -.+-..|||.||+.++.++.. + |.+
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~--~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~ 107 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDA--DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS 107 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCC--CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH
Confidence 5556678999999999999999986 211 255788999999988887610 0 111
Q ss_pred -----c--cceeeeccccCCCcccChHHHHHHHHhh-----CCCEEEEec-c-cccchhhhhhhhhhhHHHHHhhHHHHh
Q psy10666 70 -----I--FFESLPYKVNTETGLIDYDKLAESARLF-----KPRLIIAET-I-EDLKLLTKVLLEETSKWRIKHNREIRD 135 (240)
Q Consensus 70 -----~--~~~~~~y~~d~~~~~ID~d~~~~~a~~~-----kPkLIi~G~-S-~y~r~~d~~~l~E~~~w~~~~N~eIr~ 135 (240)
. -.++..+|++++ +.+|.|++++.+.+. +|++|++-. + ..-...|+.++.+ .++..++..
T Consensus 108 ~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~-----~~~~~~~~l 181 (345)
T cd06450 108 VEKAAAYLDVKVRLVPVDED-GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIAD-----LAEKYDLWL 181 (345)
T ss_pred HHHHHHHHhcCeEEeeeCCC-CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHH-----HHHHhCCeE
Confidence 1 145677788764 589999999988763 677665433 2 2234455666655 344555666
Q ss_pred hhCCCchhh
Q psy10666 136 LYNEPDVVG 144 (240)
Q Consensus 136 ~~d~s~Il~ 144 (240)
..|.++-..
T Consensus 182 ~vD~a~~~~ 190 (345)
T cd06450 182 HVDAAYGGF 190 (345)
T ss_pred EEechhhHH
Confidence 667665333
No 30
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.016 Score=54.73 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc-----------cCccc-------ccceeeecccc
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-----------ISATS-------IFFESLPYKVN 80 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~-----------~s~~g-------~~~~~~~y~~d 80 (240)
.+++++|+ ...+.+|++| -|-.-|||.|+..++.||. .+|.. .-...++..+|
T Consensus 34 ~~v~~FE~----~~ae~~G~k~-----ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 34 PFVRRFEQ----AFAEYLGVKY-----AVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred hHHHHHHH----HHHHHhCCCe-----EEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 45888886 4556689999 4777899999999999872 12211 11678888999
Q ss_pred CCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhhh-hccceeeeccccc
Q psy10666 81 TETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEI-KSGRLRWAGHVQR 159 (240)
Q Consensus 81 ~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~I-~~rrl~WaGHV~R 159 (240)
++|..||.+.+++.+... +|-|| -...|-.+.|...+.+ .+...++...-|+++-.+.. .+++.-=+||+.-
T Consensus 105 ~~T~nid~~~ie~aIt~~-tKAIi-pVhl~G~~~dm~~i~~-----la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~ 177 (374)
T COG0399 105 PDTLNIDPDLIEAAITPR-TKAII-PVHLAGQPCDMDAIMA-----LAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGA 177 (374)
T ss_pred CcccCCCHHHHHHHcccC-CeEEE-EehhccCCCCHHHHHH-----HHHHcCCeEEEEcchhccCeecCcccccccceEE
Confidence 999999999999876654 77554 3445666667766665 45566667777777766555 5555556666543
No 31
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=95.87 E-value=0.027 Score=53.14 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccc--cCCChhHHHHHHHhh------ccC------------------ccccc----
Q psy10666 22 DEIEIVAQQRSLKAFNLDPEQWGCNVQ--PYSGSPANFAVYTGL------KIS------------------ATSIF---- 71 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~~~w~~nvq--p~SG~~An~av~~al------~~s------------------~~g~~---- 71 (240)
|.||.+ -.+.|++|- +=|| -.|||+|...++.++ -++ ..|-+
T Consensus 57 d~le~i----yA~vfgaE~----ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~G 128 (403)
T PF06838_consen 57 DKLERI----YADVFGAED----ALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFG 128 (403)
T ss_dssp HHHHHH----HHHHCT-SE----EEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT
T ss_pred HHHHHH----HHHHhCchh----hhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhC
Confidence 455544 456799997 4555 579999999999998 011 11212
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccc---ccchhhhhhhhhhhHHHHHhhHHHHhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIE---DLKLLTKVLLEETSKWRIKHNREIRDLY 137 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~---y~r~~d~~~l~E~~~w~~~~N~eIr~~~ 137 (240)
.+....++.+ ++.||+|.+++.++ .+.|++.+..|. .+..+.+..+++...+-...|.++...+
T Consensus 129 i~Y~~v~L~~-dg~~D~~~i~~~~~-~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifV 195 (403)
T PF06838_consen 129 IKYREVPLTE-DGTIDWEAIKKALK-PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFV 195 (403)
T ss_dssp -EEEE--B-T-TSSB-HHHHHHHHH-TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEE
T ss_pred ceeEEEeecC-CCCcCHHHHHHhhc-cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEE
Confidence 3344455654 48999999999888 688999988875 4466888888886665555566655543
No 32
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=95.80 E-value=0.015 Score=54.18 Aligned_cols=110 Identities=12% Similarity=0.042 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhcc-----------Cccc-------ccceeeeccccC
Q psy10666 20 FIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKI-----------SATS-------IFFESLPYKVNT 81 (240)
Q Consensus 20 ~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~-----------s~~g-------~~~~~~~y~~d~ 81 (240)
.+.++|+. +.++|++++ .|-.-|||.|+.+++.++.+ ++.+ .-.+++.+++|+
T Consensus 34 ~~~~le~~----la~~~g~~~-----~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~ 104 (379)
T PRK11658 34 KNQALEQA----FCQLTGNQH-----AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDR 104 (379)
T ss_pred hHHHHHHH----HHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCC
Confidence 36666643 446788887 35567999999999998821 1111 115677888888
Q ss_pred CCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 82 ETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 82 ~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
++..+|.+++++.+. .++|+|+.-. .+-.+.|...+.+ .++..++....|.++-.+.
T Consensus 105 ~~~~~d~~~l~~~i~-~~tkav~~~~-~~G~~~d~~~i~~-----~a~~~gi~vi~D~a~a~g~ 161 (379)
T PRK11658 105 DTLMVTPEAIEAAIT-PRTKAIIPVH-YAGAPADLDAIRA-----IGERYGIPVIEDAAHAVGT 161 (379)
T ss_pred CcCCcCHHHHHHhcc-cCCeEEEEeC-CCCCcCCHHHHHH-----HHHHcCCeEEEECCCccCC
Confidence 888899999998765 3788876322 2445567776666 4455566666666664443
No 33
>PRK07179 hypothetical protein; Provisional
Probab=95.72 E-value=0.033 Score=52.14 Aligned_cols=114 Identities=14% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc-----c-----Ccccc-----c--ce
Q psy10666 11 EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-----I-----SATSI-----F--FE 73 (240)
Q Consensus 11 g~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~-----~-----s~~g~-----~--~~ 73 (240)
...|++|.....++| +.+.++++++. + +-..||+.||.+++.++. + .+.+. . .+
T Consensus 91 s~~~~~~~~~~~~le----~~la~~~g~~~----~-~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~ 161 (407)
T PRK07179 91 SAVFLHDDSPKPQFE----KKLAAFTGFES----C-LLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQ 161 (407)
T ss_pred cccccCCchHHHHHH----HHHHHHhCCCc----E-EEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCe
Confidence 356677766667777 46677789886 4 558899999999999981 1 11111 1 12
Q ss_pred eeeccccCCCcccChHHHHHHHHhhCCCEEEEeccc--ccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 74 SLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIE--DLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 74 ~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~--y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
+.+|+ .+|.|.+++.+.+.+|++|++..-. .-...|+.++.+ .++..++....|.++..+
T Consensus 162 ~~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~-----l~~~~~~~livDea~~~g 223 (407)
T PRK07179 162 AHPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVD-----IAEEFGCVLVVDESHSLG 223 (407)
T ss_pred EEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHH-----HHHHcCCEEEEECccccc
Confidence 22222 3699999998877678888776422 224456666655 334445566666665443
No 34
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=95.69 E-value=0.03 Score=52.26 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCcccc-------cceeeecccc-CCCcc
Q psy10666 24 IEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSI-------FFESLPYKVN-TETGL 85 (240)
Q Consensus 24 iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~-------~~~~~~y~~d-~~~~~ 85 (240)
.-.-+.+.+.++||+++ +.+ ..||+.||.+++.++ + .+|.+. -.++..++++ ++++.
T Consensus 64 ~~~~l~~~lA~~~g~~~----~~~-~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~ 138 (387)
T PRK09331 64 PIADFHEDLAEFLGMDE----ARV-THGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYK 138 (387)
T ss_pred HHHHHHHHHHHHhCCCc----EEE-eCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCC
Confidence 34445667778899986 444 457788999999988 1 111111 1466677773 13578
Q ss_pred cChHHHHHHHHhh------CCCEEEEecccc--cchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 86 IDYDKLAESARLF------KPRLIIAETIED--LKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 86 ID~d~~~~~a~~~------kPkLIi~G~S~y--~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
+|.+++++.+.+. +|++|++....+ -...|+..+.+ .++..++....|.++-.+
T Consensus 139 ~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~-----la~~~g~~livD~a~~~g 200 (387)
T PRK09331 139 ITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAK-----VAHEYGIPFLLNGAYTVG 200 (387)
T ss_pred cCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHH-----HHHHcCCEEEEECCcccC
Confidence 9999999988764 789888765433 23456666655 345555666666665443
No 35
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=95.39 E-value=0.038 Score=51.78 Aligned_cols=107 Identities=10% Similarity=-0.038 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhcc-----------Cccc-------ccceeeecccc
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKI-----------SATS-------IFFESLPYKVN 80 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~-----------s~~g-------~~~~~~~y~~d 80 (240)
..+.++|.. ..+.|++++ + +=.-|||.|...++.++.+ ++.+ .-.+++..++|
T Consensus 31 ~~~~~~e~~----la~~~g~~~----~-v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 31 PFSRRCETW----LENRTGTKK----A-LLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred HHHHHHHHH----HHHHhCCCe----E-EEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 446666644 334478887 3 4456889998888887621 1211 11678888899
Q ss_pred CCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 81 TETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 81 ~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++..+|.+++++.+. .++|+|+.- ..+..+.|..++.+ .++..++....|.++
T Consensus 102 ~~~~~~d~~~le~~i~-~~tk~Iip~-~~~G~~~d~~~I~~-----la~~~~i~vIeDaa~ 155 (376)
T TIGR02379 102 PDTMNIDETLIESAIT-HRTKAIVPV-HYAGVACDMDTIMA-----LANKHQLFVIEDAAQ 155 (376)
T ss_pred CCcCCCCHHHHHHhcC-cCceEEEEe-CCCCCccCHHHHHH-----HHHHCCCEEEEECcc
Confidence 8888999999988765 478988743 34556677776666 445555666666654
No 36
>KOG1549|consensus
Probab=95.34 E-value=0.048 Score=52.22 Aligned_cols=129 Identities=25% Similarity=0.335 Sum_probs=87.4
Q ss_pred ccCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhhc----c----C-------cc
Q psy10666 5 EMSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGLK----I----S-------AT 68 (240)
Q Consensus 5 ~~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al~----~----s-------~~ 68 (240)
++.|.|..++| |-+--+.+| .|.+...+|+||++ -++---|| |.+|-.|..++. - + |.
T Consensus 69 ~~~~nPh~~~y-~w~~~~~~E-~aR~~VAklInAd~----~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~ 142 (428)
T KOG1549|consen 69 EYLGNPHSRSY-GWKAEDAVE-AAREQVAKLINADP----SDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHP 142 (428)
T ss_pred HhhcCCCcccc-chhhhHHHH-HHHHHHHHHhCCCC----CcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCc
Confidence 57788988844 444344454 58899999999999 45654554 888888888871 1 0 11
Q ss_pred c----------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccc-c-chhhhhhhhhhhHHHHHhhHHHHhh
Q psy10666 69 S----------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIED-L-KLLTKVLLEETSKWRIKHNREIRDL 136 (240)
Q Consensus 69 g----------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y-~-r~~d~~~l~E~~~w~~~~N~eIr~~ 136 (240)
. .-+++...|++ +++.+|.+++++.++. +++|+++..-+. + -..|++++.. +.+.+.|...
T Consensus 143 ~v~~s~~~l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~-~T~lv~I~~Vnn~~gv~~Pv~EI~~-----icr~~~v~v~ 215 (428)
T KOG1549|consen 143 CVLDSCRALQEEGLEVTYLPVE-DSGLVDISKLREAIRS-KTRLVSIMHVNNEIGVLQPVKEIVK-----ICREEGVQVH 215 (428)
T ss_pred chhHHHHHHHhcCeEEEEeccC-ccccccHHHHHHhcCC-CceEEEEEecccCccccccHHHHHH-----HhCcCCcEEE
Confidence 1 22889999998 7899999999997666 888887765433 2 2356666654 3455666666
Q ss_pred hCCCchhhhh
Q psy10666 137 YNEPDVVGEI 146 (240)
Q Consensus 137 ~d~s~Il~~I 146 (240)
+|+++-++.|
T Consensus 216 ~DaAQavG~i 225 (428)
T KOG1549|consen 216 VDAAQAVGKI 225 (428)
T ss_pred eehhhhcCCc
Confidence 6766655544
No 37
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=95.17 E-value=0.052 Score=52.50 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=74.2
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-c----c-------------Ccccccc
Q psy10666 11 EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K----I-------------SATSIFF 72 (240)
Q Consensus 11 g~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~----~-------------s~~g~~~ 72 (240)
|.--|+|...+.++|+- ++++||.+| -|-.+||+.|....+.++ + | ...| .
T Consensus 63 GDe~yag~~s~~~lE~~----va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeVpsn~~f~Tt~ahIe~~G--a 131 (450)
T TIGR02618 63 GDEAYAGSRNFYHLERT----VRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYVPGNMYFTTTRYHQEKNG--A 131 (450)
T ss_pred cchhhcCCCcHHHHHHH----HHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEECCceeHHHHHHHHHhCC--e
Confidence 44569999999999864 455799998 577899999955455333 0 1 1112 1
Q ss_pred eeeeccc---------cCCCcccChHHHHHHHHhhCC---CEEEEecccc---cch---hhhhhhhhhhHHHHHhhHHHH
Q psy10666 73 ESLPYKV---------NTETGLIDYDKLAESARLFKP---RLIIAETIED---LKL---LTKVLLEETSKWRIKHNREIR 134 (240)
Q Consensus 73 ~~~~y~~---------d~~~~~ID~d~~~~~a~~~kP---kLIi~G~S~y---~r~---~d~~~l~E~~~w~~~~N~eIr 134 (240)
.++..+. +|.++.||.+++++.+.+..+ ++|.+...+. -.+ .|+..+.+ .++..+|.
T Consensus 132 v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~e-----lA~~~Gl~ 206 (450)
T TIGR02618 132 TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRE-----LCEAHGIK 206 (450)
T ss_pred EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHH-----HHHHcCCE
Confidence 3333333 256799999999999886433 2444433333 133 34455544 45667778
Q ss_pred hhhCCCchhh
Q psy10666 135 DLYNEPDVVG 144 (240)
Q Consensus 135 ~~~d~s~Il~ 144 (240)
...|.++..+
T Consensus 207 vi~DaAR~~g 216 (450)
T TIGR02618 207 VFYDATRCVE 216 (450)
T ss_pred EEEEccchhh
Confidence 8888888763
No 38
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=95.16 E-value=0.054 Score=50.35 Aligned_cols=112 Identities=12% Similarity=-0.029 Sum_probs=68.2
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc-----------cCccc-------ccceee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-----------ISATS-------IFFESL 75 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~-----------~s~~g-------~~~~~~ 75 (240)
+|+-..+++++|+. .++.|+.++ -+---||+.|...++.++. .++.+ .-.+++
T Consensus 26 ~~g~~~~~~~~e~~----la~~~g~~~-----~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v 96 (375)
T PRK11706 26 LCGDGGFTRRCQQW----LEQRFGSAK-----VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIV 96 (375)
T ss_pred ccCCCHHHHHHHHH----HHHHhCCCe-----EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEE
Confidence 34323445555542 344588887 3344588988766666551 11211 126788
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.+++|+++..+|.|++++.+.. ++|+|++- +.+-...|...+.+ .++..++....|.++
T Consensus 97 ~~d~d~~~~~~d~~~le~~i~~-~tk~i~~~-~~~G~~~~~~~i~~-----la~~~~i~vIeD~a~ 155 (375)
T PRK11706 97 FVDIRPDTMNIDETLIEAAITP-KTRAIVPV-HYAGVACEMDTIMA-----LAKKHNLFVVEDAAQ 155 (375)
T ss_pred EEecCCCcCCcCHHHHHHhcCC-CCeEEEEe-CCCCCccCHHHHHH-----HHHHcCCEEEEECcc
Confidence 8899988888999999987755 78988753 23344556665555 334445555555554
No 39
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=94.88 E-value=0.065 Score=49.01 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccc-CCChhHHHHHHHhhcc---C----------ccc----------c-cceee
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQP-YSGSPANFAVYTGLKI---S----------ATS----------I-FFESL 75 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp-~SG~~An~av~~al~~---s----------~~g----------~-~~~~~ 75 (240)
..++-.-+.+...++|+++.. .+|-. .|||.|+..+..++.. . +.+ . -.++.
T Consensus 41 ~~~~~~~~~~~la~~~~~~~~---~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (373)
T cd06453 41 ATDAYEAAREKVARFINAPSP---DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLK 117 (373)
T ss_pred HHHHHHHHHHHHHHHhCCCCC---CeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEE
Confidence 334444456677799998821 24433 3557787777777611 0 111 1 14566
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
..+++ +++.+|+|++++.+.+ ++++|++.....+ ...|+..+.+ .+++.++....|.++
T Consensus 118 ~v~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~i~~-----~~~~~~~~li~D~a~ 178 (373)
T cd06453 118 VVPVD-DDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVKEIGE-----IAHEAGVPVLVDGAQ 178 (373)
T ss_pred EeecC-CCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHHHHHH-----HHHHcCCEEEEEhhh
Confidence 67776 4678999999998765 8999998766544 3456666655 344555666666544
No 40
>PRK02769 histidine decarboxylase; Provisional
Probab=94.64 E-value=0.13 Score=48.41 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=68.0
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCC-cccccccCCChhHHHHHHHhh------------ccCccc----
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQ-WGCNVQPYSGSPANFAVYTGL------------KISATS---- 69 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~-w~~nvqp~SG~~An~av~~al------------~~s~~g---- 69 (240)
.|.|..-..-|.+ .-++|.-+++...+||+++..+ |+ .+ .-+||.||+....+- ...|.+
T Consensus 50 ~gnp~~~~~~g~~-~~~~e~~~~~~~a~l~g~~~~~~~G-~~-TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka 126 (380)
T PRK02769 50 CGDPYSKSNYPLN-SFDFERDVMNFFAELFKIPFNESWG-YI-TNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKI 126 (380)
T ss_pred CCCccccCCCCCC-hHHHHHHHHHHHHHHhCCCCCCCCE-EE-ecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHH
Confidence 3555543333333 6789999999999999997532 42 22 356689997665432 011111
Q ss_pred --cc-ceeeeccccCCCcccChHHHHHHHHhh--CCCEEEEec--ccccchhhhhhhhh
Q psy10666 70 --IF-FESLPYKVNTETGLIDYDKLAESARLF--KPRLIIAET--IEDLKLLTKVLLEE 121 (240)
Q Consensus 70 --~~-~~~~~y~~d~~~~~ID~d~~~~~a~~~--kPkLIi~G~--S~y~r~~d~~~l~E 121 (240)
.+ .+....++++ ++.+|++++++.+.+. +|.+|++-. +..--.-|+.++.+
T Consensus 127 ~~~lg~~~~~V~~~~-~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~ 184 (380)
T PRK02769 127 ARLLRIKSRVITSLP-NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQE 184 (380)
T ss_pred HHHcCCCCceeccCC-CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHH
Confidence 11 3344556664 6889999999988775 577755433 33334556777766
No 41
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=94.45 E-value=0.14 Score=45.89 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=51.2
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCccc--------cc--cee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATS--------IF--FES 74 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g--------~~--~~~ 74 (240)
|+......++| +...++|+ +. -.+-..|||.|+.+++.++ ..++.+ .+ .++
T Consensus 28 ~~~~~~~~~l~----~~~a~~~g-~~----~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~ 98 (338)
T cd06502 28 YGEDPTTAKLE----ARAAELFG-KE----AALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGVKL 98 (338)
T ss_pred cCCCHHHHHHH----HHHHHHhC-CC----eEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHHcCceE
Confidence 43344444554 45566777 33 3677889999999999987 111111 11 344
Q ss_pred eeccccCCCcccChHHHHHHHHh------hCCCEEEEe
Q psy10666 75 LPYKVNTETGLIDYDKLAESARL------FKPRLIIAE 106 (240)
Q Consensus 75 ~~y~~d~~~~~ID~d~~~~~a~~------~kPkLIi~G 106 (240)
..++.+ ++.+|.+++++.+.+ .+|++|++-
T Consensus 99 ~~v~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~ 134 (338)
T cd06502 99 LPVPGE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLE 134 (338)
T ss_pred EeecCC--CCcCCHHHHHHHhhccCCCcCCcceEEEEE
Confidence 455554 467999999998875 378887765
No 42
>PLN02263 serine decarboxylase
Probab=94.27 E-value=0.095 Score=51.00 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-CcccccccCCChhHHHHHHHhh---------------ccCccc---cc-ceeeecccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPE-QWGCNVQPYSGSPANFAVYTGL---------------KISATS---IF-FESLPYKVN 80 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~-~w~~nvqp~SG~~An~av~~al---------------~~s~~g---~~-~~~~~y~~d 80 (240)
.-++|...++-..+||+.+.+ -|| .+ --+||.||+.++.+- |-|+.. .+ +++...|+|
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G-~v-tsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWG-YI-TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL 208 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeE-EE-eCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC
Confidence 779999999999999998653 365 34 367799999887765 111110 11 577888887
Q ss_pred CCCcccChHHHHHHHHhhC--CCEEE--Eecccccchhhhhhhhh
Q psy10666 81 TETGLIDYDKLAESARLFK--PRLII--AETIEDLKLLTKVLLEE 121 (240)
Q Consensus 81 ~~~~~ID~d~~~~~a~~~k--PkLIi--~G~S~y~r~~d~~~l~E 121 (240)
+++.+|+++|++.+.+.+ |-+|+ +|....--.=|+.++.+
T Consensus 209 -~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~ 252 (470)
T PLN02263 209 -VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIK 252 (470)
T ss_pred -CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHH
Confidence 468999999998777544 76553 35554444455766666
No 43
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=94.13 E-value=0.12 Score=46.58 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----ccC-----ccc-------ccceeeeccccCCCcccChH
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KIS-----ATS-------IFFESLPYKVNTETGLIDYD 89 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~s-----~~g-------~~~~~~~y~~d~~~~~ID~d 89 (240)
...+.++++|+++. ++-+.||+.||.+++.++ +|= +.+ .-.++..++ .+|.+
T Consensus 50 ~l~~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~ 118 (349)
T cd06454 50 ELEEELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFK------HNDME 118 (349)
T ss_pred HHHHHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEec------CCCHH
Confidence 33356677889875 577899999999988887 110 110 002222222 36888
Q ss_pred HHHHHHHh----hCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 90 KLAESARL----FKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 90 ~~~~~a~~----~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
.+++.+.+ .+++++++.....+ ...|+.++.+ .++..++....|..+.
T Consensus 119 ~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~-----~~~~~~~~livD~a~~ 172 (349)
T cd06454 119 DLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVD-----LAKKYGAILFVDEAHS 172 (349)
T ss_pred HHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHH-----HHHHcCCEEEEEcccc
Confidence 99988876 46788887653332 3355655555 3344455555665553
No 44
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=94.07 E-value=0.092 Score=47.87 Aligned_cols=126 Identities=22% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCCCCCcccC-CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhhc-----c-------C---ccc
Q psy10666 7 SSDEEGKYYG-GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGLK-----I-------S---ATS 69 (240)
Q Consensus 7 ~g~pg~ryy~-G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al~-----~-------s---~~g 69 (240)
.|.|+.+.+. +....+.+|+ +.+.+.++|+++.+ +|-..+| |.|+..++.++. . + +.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s 100 (353)
T TIGR03235 26 FGNPSSRTHEFGHNAKKAVER-ARKQVAEALGADTE----EVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPA 100 (353)
T ss_pred CCCCCchhhHHHHHHHHHHHH-HHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHH
Confidence 3566655332 3333334444 66777789999863 5655565 668888777761 0 0 111
Q ss_pred ----------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhh
Q psy10666 70 ----------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLY 137 (240)
Q Consensus 70 ----------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~ 137 (240)
.-.++..+++++ ++.+|.+++++.+. .++++|++-....+ ...|+..+.+ ..+..++....
T Consensus 101 ~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~l~~~l~-~~~~lv~~~~~~n~tG~~~~~~~I~~-----l~~~~~~~~iv 173 (353)
T TIGR03235 101 VLEPIRALERNGFTVTYLPVDE-SGRIDVDELADAIR-PDTLLVSIMHVNNETGSIQPIREIAE-----VLEAHEAFFHV 173 (353)
T ss_pred HHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhCC-CCCEEEEEEcccCCceeccCHHHHHH-----HHHHcCCEEEE
Confidence 114677777774 57899999988774 46788876543333 4456666655 33444566666
Q ss_pred CCCchhh
Q psy10666 138 NEPDVVG 144 (240)
Q Consensus 138 d~s~Il~ 144 (240)
|.++..+
T Consensus 174 D~a~~~g 180 (353)
T TIGR03235 174 DAAQVVG 180 (353)
T ss_pred EchhhcC
Confidence 6655443
No 45
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=93.99 E-value=0.16 Score=46.74 Aligned_cols=125 Identities=11% Similarity=0.094 Sum_probs=71.4
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----c----c-----Cccc---
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----K----I-----SATS--- 69 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----~----~-----s~~g--- 69 (240)
..|+|+.-+..+.+..+.+ +-+.+.+.++||++.+ + + +--.|||.|+.+++.++ + + .|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~~r~~la~~~g~~~~-~-i-~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~ 101 (379)
T TIGR03402 26 YFGNPSSMHSFGGEVGKAV-EEAREQVAKLLGAEPD-E-I-IFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLS 101 (379)
T ss_pred cCCCCCcccHHHHHHHHHH-HHHHHHHHHHhCCCCC-e-E-EEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHH
Confidence 4566764332333333444 4466778899999863 1 2 22347788877666654 0 0 1111
Q ss_pred -------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 70 -------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 70 -------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.-.++...|+++ ++.+|.+++++.+.+ +++++++-....+ ...|+..+.+ ..+..++....|..
T Consensus 102 ~~~~~~~~G~~v~~v~~~~-~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~~~~~~I~~-----l~~~~g~~vivD~~ 174 (379)
T TIGR03402 102 LCQHLEKQGYKVTYLPVDE-EGRLDLEELRAAITD-DTALVSVMWANNETGTIFPIEEIGE-----IAKERGALFHTDAV 174 (379)
T ss_pred HHHHHHHcCCEEEEEccCC-CCcCCHHHHHHhcCC-CcEEEEEEcccCCeeecccHHHHHH-----HHHHcCCEEEEECc
Confidence 114566667764 578999999998754 7888776543333 4466666655 33444555555544
Q ss_pred c
Q psy10666 141 D 141 (240)
Q Consensus 141 ~ 141 (240)
+
T Consensus 175 ~ 175 (379)
T TIGR03402 175 Q 175 (379)
T ss_pred c
Confidence 3
No 46
>KOG2040|consensus
Probab=93.73 E-value=0.14 Score=51.59 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----------------ccCccc------c--cceeeeccccCCCc
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----------------KISATS------I--FFESLPYKVNTETG 84 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----------------~~s~~g------~--~~~~~~y~~d~~~~ 84 (240)
+-++++.|-|. +..||-||.+--.+-+.++ ++|..| . -+.+++..+| .+|
T Consensus 589 ~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~-~~G 663 (1001)
T KOG2040|consen 589 KDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCD-ANG 663 (1001)
T ss_pred HHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeecc-CCC
Confidence 34567788887 7999999998776666655 445444 2 2899999998 469
Q ss_pred ccChHHHHHHHHhhCCCEEEEecccccc-----hhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhhh
Q psy10666 85 LIDYDKLAESARLFKPRLIIAETIEDLK-----LLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEI 146 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G~S~y~r-----~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~I 146 (240)
.||+..++.+|++++-+|- +=.-.||. ..++..+-+ +++..+-...+|.+.+...+
T Consensus 664 ~id~~dLk~kaekh~~~La-a~MvTYPST~GvfE~~i~d~cd-----~iHehGGQVYlDGANMNAqV 724 (1001)
T KOG2040|consen 664 NIDMVDLKAKAEKHKDNLA-ALMVTYPSTHGVFEEGIDDICD-----IIHEHGGQVYLDGANMNAQV 724 (1001)
T ss_pred CccHHHHHHHHHHhhhhhh-eeEEecccccccccccHHHHHH-----HHHhcCCEEEecCCCcccee
Confidence 9999999999999998752 12233443 334433322 34555545555666655443
No 47
>PRK02948 cysteine desulfurase; Provisional
Probab=93.64 E-value=0.13 Score=47.38 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=71.4
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhhc--------------cCccc---
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGLK--------------ISATS--- 69 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al~--------------~s~~g--- 69 (240)
|.|+..+..|-+ ..++.+-+.+.+.++|+++. -+|-..|| +.||..++.++. ..|.+
T Consensus 29 ~~~~~~~~~~~~-~~~~~~~~r~~la~~~g~~~----~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~ 103 (381)
T PRK02948 29 GNESSLHDIGGT-ASSLLQVCRKTFAEMIGGEE----QGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHS 103 (381)
T ss_pred CCCccccHHHHH-HHHHHHHHHHHHHHHhCCCC----CeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHH
Confidence 445544444433 34455557777788999876 35655555 888887776651 01111
Q ss_pred -------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 70 -------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 70 -------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.-.++...++++ ++.+|.|++++.+. .++++|++.....+ ...|+..+.+ .++..++....|..
T Consensus 104 ~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~l~-~~~~lv~~~~~~n~tG~~~~~~~I~~-----l~~~~~~~vivD~~ 176 (381)
T PRK02948 104 YFQSLESQGYTVTEIPVDK-SGLIRLVDLERAIT-PDTVLASIQHANSEIGTIQPIAEIGA-----LLKKYNVLFHSDCV 176 (381)
T ss_pred HHHHHHhCCCEEEEEeeCC-CCCCCHHHHHHhcC-CCCEEEEEECCcCCcEeehhHHHHHH-----HHHHcCCEEEEECh
Confidence 013566677774 57899999988764 36788776543332 4466666655 33444455555543
No 48
>PLN02651 cysteine desulfurase
Probab=93.64 E-value=0.13 Score=47.30 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccc-ccCCChhHHHHHHHhh---------cc-----Cccc----------ccceeeec
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNV-QPYSGSPANFAVYTGL---------KI-----SATS----------IFFESLPY 77 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nv-qp~SG~~An~av~~al---------~~-----s~~g----------~~~~~~~y 77 (240)
++-.-+.+.+.++|+++.+ +| -.-|||.|+..++.++ +| .|.+ .-.++..+
T Consensus 43 ~~~~~~r~~la~~~g~~~~----~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v 118 (364)
T PLN02651 43 DAVEKARAQVAALIGADPK----EIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYL 118 (364)
T ss_pred HHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEE
Confidence 3334457788899999863 33 3446678866665543 01 0111 11456667
Q ss_pred cccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 78 KVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 78 ~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
++++ ++.+|.+++++.+.. +++++++.....+ ...|+.++.+ ..+..++....|..+-
T Consensus 119 ~~~~-~~~~d~~~l~~~i~~-~t~lv~v~~~~n~tG~~~~l~~I~~-----~~~~~g~~~~vD~a~~ 178 (364)
T PLN02651 119 PVKS-DGLVDLDELAAAIRP-DTALVSVMAVNNEIGVIQPVEEIGE-----LCREKKVLFHTDAAQA 178 (364)
T ss_pred ccCC-CCcCCHHHHHHhcCC-CcEEEEEECCCCCceecccHHHHHH-----HHHHcCCEEEEEcchh
Confidence 7764 578999999988754 6788877654433 4467777766 4455566666665543
No 49
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=93.33 E-value=0.3 Score=44.53 Aligned_cols=122 Identities=13% Similarity=-0.016 Sum_probs=74.5
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCccccc-ccCCChhHHHHHHHhhc-----------c-----Ccc
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNV-QPYSGSPANFAVYTGLK-----------I-----SAT 68 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nv-qp~SG~~An~av~~al~-----------~-----s~~ 68 (240)
..|.|+ +|.|+ .+++.-+.+.+.++||++. .++ =..+|+.||..+..++. | +|.
T Consensus 47 ~~~~~~--~~~~~---~~~~~~~~~~la~~~g~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~ 117 (373)
T TIGR03812 47 NLGDPG--LFPGT---KKIEEEVVGSLGNLLHLPD----AYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHF 117 (373)
T ss_pred CCCCcc--cCccH---HHHHHHHHHHHHHHhCCCC----CCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchH
Confidence 346664 35553 4677778889999999986 333 34567888877665541 0 011
Q ss_pred c-------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccc-ccchhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 69 S-------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIE-DLKLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 69 g-------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~-y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+ .-.++..+++++ ++.+|.+++++.+.+..++++++.++. .-...|+..+.+ .++..++...+|.+
T Consensus 118 ~~~~~~~~~G~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~-----l~~~~~~~livD~a 191 (373)
T TIGR03812 118 SFEKAAEMLGLELRYAPLDE-DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSK-----IALENGIYLHVDAA 191 (373)
T ss_pred HHHHHHHHcCCeEEEEeeCC-CCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHH-----HHHHcCCeEEEEcC
Confidence 1 114666777764 578999999998765434555544333 223456777766 34555666777776
Q ss_pred ch
Q psy10666 141 DV 142 (240)
Q Consensus 141 ~I 142 (240)
+.
T Consensus 192 ~~ 193 (373)
T TIGR03812 192 FG 193 (373)
T ss_pred ch
Confidence 64
No 50
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=93.19 E-value=0.19 Score=47.46 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=66.3
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Ccccc--c----
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSI--F---- 71 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~--~---- 71 (240)
||.-.|| ++..++++| +++.+++|+++ +.+ ..||+.|+.+++.++ +| .+.+. +
T Consensus 56 ~~~y~r~--~~p~~~~Le----~~lA~l~G~~~----~~~-~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~ 124 (398)
T PRK07504 56 GFIYSRY--SNPTVDMFE----KRMCALEGAED----ARA-TASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETL 124 (398)
T ss_pred CceeecC--CCchHHHHH----HHHHHHhCCCe----eeE-ecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHH
Confidence 4444443 233366666 44456799998 455 669999998888776 11 11111 0
Q ss_pred -----ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 72 -----FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 72 -----~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.++.. +| .+|.+++++.+. .++|+|++...+.| ..+|+..+.+ .++..++....|.+.
T Consensus 125 ~~~~G~~v~~--vd----~~d~e~l~~ai~-~~tklV~lesp~NptG~v~dl~~I~~-----la~~~gi~lvvD~a~ 189 (398)
T PRK07504 125 LPRYGIESTL--VD----GLDLDNWEKAVR-PNTKVFFLESPTNPTLEVIDIAAVAK-----IANQAGAKLVVDNVF 189 (398)
T ss_pred HhhcCeEEEE--EC----CCCHHHHHHhcC-cCceEEEEECCCCCCcEecCHHHHHH-----HHHHcCCEEEEECCc
Confidence 11111 12 378888877653 57899988776665 5678777766 344445555666553
No 51
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=93.14 E-value=0.3 Score=46.81 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh--------ccC-----------ccc-------cccee
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------KIS-----------ATS-------IFFES 74 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al--------~~s-----------~~g-------~~~~~ 74 (240)
+.++|. ...+.+++++ -+-..|||.|+..++.++ .+. +.+ .-...
T Consensus 65 ~~~fe~----~lA~~~g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~p 135 (438)
T PRK15407 65 NDAFEK----KLAEFLGVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVP 135 (438)
T ss_pred HHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEE
Confidence 555553 3445578876 456788999999999865 111 111 11456
Q ss_pred eeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhhh-hccceee
Q psy10666 75 LPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEI-KSGRLRW 153 (240)
Q Consensus 75 ~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~I-~~rrl~W 153 (240)
+..++++++..+|.+.+++.+. .++|+|++-.. +-.+.|...+.+ .++..++....|.++-.+.. .+++.-=
T Consensus 136 v~vdvd~~~~~id~~~le~~i~-~~tkaVi~~~~-~G~p~dl~~I~~-----la~~~gi~vIeDaa~a~G~~~~g~~~G~ 208 (438)
T PRK15407 136 VFVDVELPTYNIDASLLEAAVS-PKTKAIMIAHT-LGNPFDLAAVKA-----FCDKHNLWLIEDNCDALGSTYDGRMTGT 208 (438)
T ss_pred EEEecCCCcCCcCHHHHHHHcC-cCCeEEEEeCC-CCChhhHHHHHH-----HHHHCCCEEEEECccchhhhcCCeeeec
Confidence 6777777788999999998764 47888777542 334566666665 45566777777877755544 3333333
Q ss_pred ecccc
Q psy10666 154 AGHVQ 158 (240)
Q Consensus 154 aGHV~ 158 (240)
+|++.
T Consensus 209 ~gd~~ 213 (438)
T PRK15407 209 FGDIA 213 (438)
T ss_pred cCceE
Confidence 34443
No 52
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=93.10 E-value=0.21 Score=45.51 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-c--------c-----Cccc------cc-ceeeeccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K--------I-----SATS------IF-FESLPYKV 79 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~--------~-----s~~g------~~-~~~~~y~~ 79 (240)
..+++.-+.+.+.++||++.. .-+-.-||+.||++++.++ . | +|.+ .+ .++..+|+
T Consensus 57 ~~~~~~~~~~~la~~~g~~~~---~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~ 133 (371)
T PRK13520 57 TAKLEEEAVEMLGELLHLPDA---YGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPL 133 (371)
T ss_pred HHHHHHHHHHHHHHHhCCCCC---CeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecC
Confidence 345566677778899998752 1233557899998887654 1 0 0111 11 45666667
Q ss_pred cCCCcccChHHHHHHHHhhCCCEEE-Eec-ccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 80 NTETGLIDYDKLAESARLFKPRLII-AET-IEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 80 d~~~~~ID~d~~~~~a~~~kPkLIi-~G~-S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
++ ++.+|.+++++.+... +++|+ +-. +..-...|+.++.+ ..+..++...+|.++.
T Consensus 134 ~~-~~~~d~~~l~~~i~~~-~~~vi~~~~~~~tG~~~~l~~I~~-----l~~~~g~~livD~a~~ 191 (371)
T PRK13520 134 DD-DYRVDVKAVEDLIDDN-TIGIVGIAGTTELGQVDPIPELSK-----IALENGIFLHVDAAFG 191 (371)
T ss_pred CC-CCcCCHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHH-----HHHHcCCCEEEEecch
Confidence 64 5789999999987653 54444 332 34445567777766 4455566777777654
No 53
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=92.96 E-value=0.29 Score=44.91 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=64.2
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc-----c-----Cccc-----cc-
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-----I-----SATS-----IF- 71 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~-----~-----s~~g-----~~- 71 (240)
++++.++..|+. +-.+.+ .+.+.++|+++. +|-..||+.|+.+++.++- | .+.+ ..
T Consensus 75 ~~~~~~~~~G~~--~l~~~l-~~~la~~~g~~~-----~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~ 146 (397)
T PRK06939 75 GMASVRFICGTQ--DLHKEL-EEKLAKFLGTED-----AILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLC 146 (397)
T ss_pred CCcccccccCCc--HHHHHH-HHHHHHHhCCCc-----EEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhc
Confidence 455556666752 222233 345556778764 6788899999999998881 1 1111 00
Q ss_pred -ceeeeccccCCCcccChHHHHHHHHh---h--CCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 72 -FESLPYKVNTETGLIDYDKLAESARL---F--KPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 72 -~~~~~y~~d~~~~~ID~d~~~~~a~~---~--kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.+++.++ .+|.+.+++.+.+ . ++++|+.+....+ ...+...+.+ .++..++....|..+
T Consensus 147 ~~~~~~~~------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~-----la~~~~~~li~De~~ 213 (397)
T PRK06939 147 KAKRYRYA------NNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICD-----LADKYDALVMVDDSH 213 (397)
T ss_pred CCceEEeC------CCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHH-----HHHHhCCEEEEECcc
Confidence 1222222 2588988887765 3 7788887753222 2244555554 334445555555554
No 54
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=92.92 E-value=0.3 Score=45.37 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=62.6
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESL 75 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~ 75 (240)
++...+++|+ ++.++++++. + +=--||+.|+.+++.++ +| .+.+.+ .++.
T Consensus 38 ~~p~~~~le~----~la~l~g~~~----a-~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~ 108 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGEA----A-LAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVT 108 (369)
T ss_pred CChhHHHHHH----HHHHHHCCCC----E-EEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEE
Confidence 5566777775 4455788876 3 44579999999999998 11 121110 1222
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.++.+ |.+++++.+.. ++++|++.....+ ...|+..+.+ .++..++....|.++
T Consensus 109 ~v~~~------d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~-----la~~~g~~livD~t~ 164 (369)
T cd00614 109 FVDPD------DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAE-----LAHEHGALLVVDNTF 164 (369)
T ss_pred EeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 22221 46777776644 7899998755444 4467766666 345556666666554
No 55
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=92.65 E-value=0.17 Score=46.98 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=61.4
Q ss_pred HHhhcCCCCCCcccccccCCChhHHHHHHHhh-c-----cC------------------ccccc------ceeeeccccC
Q psy10666 32 SLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K-----IS------------------ATSIF------FESLPYKVNT 81 (240)
Q Consensus 32 ~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~-----~s------------------~~g~~------~~~~~y~~d~ 81 (240)
-.++|+++.+ .|-+|-+|||+|...++.++ + ++ ..|-+ |+.+ |+.+
T Consensus 74 yA~vf~aE~a--~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v--~Lt~ 149 (416)
T COG4100 74 YAQVFGAEAA--LVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAV--PLTA 149 (416)
T ss_pred HHHHhccccc--eeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeec--cccc
Confidence 3467999973 15566789999999999997 1 11 11211 3333 3433
Q ss_pred CCcccChHHHHHHHHhhCCCEEEEecccc---cchhhhhhhhhhhHHHHHhhHHHH
Q psy10666 82 ETGLIDYDKLAESARLFKPRLIIAETIED---LKLLTKVLLEETSKWRIKHNREIR 134 (240)
Q Consensus 82 ~~~~ID~d~~~~~a~~~kPkLIi~G~S~y---~r~~d~~~l~E~~~w~~~~N~eIr 134 (240)
++.||++.+.+-.. .+-|||-...|+= +-.+.+.++++..+.-..-|+.+.
T Consensus 150 -~gkiD~~~v~~~i~-~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~i 203 (416)
T COG4100 150 -DGKIDIQAVKTAIS-DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVI 203 (416)
T ss_pred -CCcccHHHHHHhcC-ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEE
Confidence 48999999987554 6778888887752 334667777775544433444443
No 56
>PLN02409 serine--glyoxylate aminotransaminase
Probab=92.44 E-value=0.43 Score=44.79 Aligned_cols=113 Identities=12% Similarity=-0.031 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc---C---cccc--------cceeeeccccCC
Q psy10666 22 DEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI---S---ATSI--------FFESLPYKVNTE 82 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~---s---~~g~--------~~~~~~y~~d~~ 82 (240)
.++=+-+.+..+++|+++..+ +.+-+-|||.|+.+++..+ +| + ++-. -.++..++++++
T Consensus 41 ~~~~~~~~~~l~~~~g~~~~~--~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~ 118 (401)
T PLN02409 41 PALTKELLEDVKYIFKTKSGT--PFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWG 118 (401)
T ss_pred HHHHHHHHHHHHHHhCCCCCC--EEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCC
Confidence 344455667788899997421 5578889999999988877 11 1 1111 145666777654
Q ss_pred CcccChHHHHHHHHh---hCCCEEEEeccc--ccchhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 83 TGLIDYDKLAESARL---FKPRLIIAETIE--DLKLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 83 ~~~ID~d~~~~~a~~---~kPkLIi~G~S~--y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
..+|.+++++.+.+ .++++|++-... .-...|+..+.+... ++..++....|..
T Consensus 119 -~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~---~~~~g~~~vvD~v 177 (401)
T PLN02409 119 -QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD---CAQHPALLLVDGV 177 (401)
T ss_pred -CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh---hhccCcEEEEEcc
Confidence 45899999998886 489988886442 335567777766211 3334445545543
No 57
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=92.44 E-value=0.4 Score=44.84 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=77.8
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-------------ccCc--cc--ccc
Q psy10666 10 EEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------------KISA--TS--IFF 72 (240)
Q Consensus 10 pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-------------~~s~--~g--~~~ 72 (240)
.+.--||--+++.++| ++++++|+.. +-+=.-|||+||+.+..+. |+.- .| .+|
T Consensus 26 ~~~~~YG~D~~~~~~e----~~~ae~~g~~-----a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~ 96 (342)
T COG2008 26 VGDDVYGEDPTTNALE----QRIAELFGKE-----AALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFF 96 (342)
T ss_pred cCCCCCCCCHHHHHHH----HHHHHHhCCc-----eEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHH
Confidence 4566787766666666 4567778874 3556789999999999998 2221 12 223
Q ss_pred e-eeeccccC-CCcccChHHHHHHHHh------hCCCEEEEeccc-ccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchh
Q psy10666 73 E-SLPYKVNT-ETGLIDYDKLAESARL------FKPRLIIAETIE-DLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVV 143 (240)
Q Consensus 73 ~-~~~y~~d~-~~~~ID~d~~~~~a~~------~kPkLIi~G~S~-y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il 143 (240)
. ..+.++++ .++.++.|+++..++. .+|.+++.-... +-..+++.+|++. +...+...+....|.+.+.
T Consensus 97 ~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i--~~~~k~~~l~LHmDGAR~~ 174 (342)
T COG2008 97 GGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAI--SAVCKEHGLPLHMDGARLA 174 (342)
T ss_pred cCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHH--HHHHHHhCCceeechHHHH
Confidence 2 47777776 6899999999886652 334444433222 2344556666663 2335566666666655544
Q ss_pred hhh
Q psy10666 144 GEI 146 (240)
Q Consensus 144 ~~I 146 (240)
.-.
T Consensus 175 nA~ 177 (342)
T COG2008 175 NAL 177 (342)
T ss_pred HHH
Confidence 433
No 58
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=92.29 E-value=0.49 Score=45.73 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCCh-hHHHHHHHhhccC-------------ccc-----cc--ceeeecc-
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGS-PANFAVYTGLKIS-------------ATS-----IF--FESLPYK- 78 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~-~An~av~~al~~s-------------~~g-----~~--~~~~~y~- 78 (240)
.-.+++...+.+.++||++..+. +-+-| +|| .|++.++.|+++. |.+ .+ .+.+..+
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~-a~~v~-~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~ 180 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKS-AFVVP-LATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIET 180 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCE-EEEEC-CHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeee
Confidence 45677777788888999982100 23333 556 5777777877321 111 11 4556666
Q ss_pred -ccCCCcccChHHHHHHHHhh--CCCEEEEeccc-cc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 79 -VNTETGLIDYDKLAESARLF--KPRLIIAETIE-DL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 79 -~d~~~~~ID~d~~~~~a~~~--kPkLIi~G~S~-y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+++++..+|.+++++.+... +..+++.+... +. .+-|+..+.+ .++..+|....|.+
T Consensus 181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~-----la~k~gI~lIvDaA 243 (444)
T TIGR03531 181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAK-----ICANYDIPHIVNNA 243 (444)
T ss_pred eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHH-----HHHHcCCEEEEECc
Confidence 46778899999999988754 44555665443 32 4556766666 34445555554443
No 59
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=92.28 E-value=0.33 Score=47.07 Aligned_cols=113 Identities=15% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh---------------------------ccCccc--cc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL---------------------------KISATS--IF 71 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al---------------------------~~s~~g--~~ 71 (240)
.-++|+-|+.-+.+||++.-. + .-+=-.+||.||+..+.+. |.|+.. .+
T Consensus 99 a~~~E~~~v~~l~~l~~~~~~-~-~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~ 176 (460)
T COG0076 99 AAELEERVVNMLSDLLGAPEE-A-SGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARY 176 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-C-ceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHH
Confidence 568999999999999999521 1 4556678999999666555 000000 11
Q ss_pred --ceeeeccccCCCcccChHHHHHHHHhhCCC--EE-EEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 72 --FESLPYKVNTETGLIDYDKLAESARLFKPR--LI-IAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 72 --~~~~~y~~d~~~~~ID~d~~~~~a~~~kPk--LI-i~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+.....++++.+..||.+++++.+.+..=. +| ++|...+-..-|+..|.+ +....+|...+|++
T Consensus 177 lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~-----ia~~~~i~lHVDAA 245 (460)
T COG0076 177 LGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELAD-----IAEEYGIWLHVDAA 245 (460)
T ss_pred hCCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHH-----HHHHcCCcEEEEcc
Confidence 556666777767899999999999998876 54 445444444456777766 44444555555543
No 60
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=91.62 E-value=0.59 Score=42.84 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=61.1
Q ss_pred HHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-----c-----cCccc-------ccceeeeccccCC-CcccChH
Q psy10666 29 QQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-----K-----ISATS-------IFFESLPYKVNTE-TGLIDYD 89 (240)
Q Consensus 29 ~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~-~~~ID~d 89 (240)
.+.+.++||++. +-..+| +.|+.+++.++ + .++.+ .-.+++.++++++ +..+|.|
T Consensus 50 ~~~la~~~g~~~------i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 123 (361)
T cd06452 50 HHDLAEFLGMDE------ARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPE 123 (361)
T ss_pred HHHHHHHcCCce------EEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHH
Confidence 344566788853 334454 56888888887 1 11111 1146677777754 3489999
Q ss_pred HHHHHHHh------hCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 90 KLAESARL------FKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 90 ~~~~~a~~------~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
++++.+.+ .+|++|++....++ ...|...+.+ ..+..++....|.++.
T Consensus 124 ~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~-----~~~~~~~~vivD~a~~ 179 (361)
T cd06452 124 GYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAK-----VCHEYGVPLLLNGAYT 179 (361)
T ss_pred HHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHH-----HHHHcCCeEEEECCcc
Confidence 99887764 26888888654433 3455555554 2333445555555543
No 61
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=91.53 E-value=0.57 Score=43.82 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-------
Q psy10666 9 DEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF------- 71 (240)
Q Consensus 9 ~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~------- 71 (240)
|.-.||- +..++++| +++.++++++. + +=.-||+.|+.+++.++ +| .+.+.+
T Consensus 46 ~~y~r~~--~p~~~~le----~~la~l~g~~~----~-~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~ 114 (380)
T TIGR01325 46 FVYSRYA--NPTVAAFE----ERIAALEGAER----A-VATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEIL 114 (380)
T ss_pred cceecCC--CchHHHHH----HHHHHHhCCCc----E-EEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHH
Confidence 3334443 33466666 44556789986 3 44789999999999888 11 111100
Q ss_pred ----ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 72 ----FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 72 ----~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.++..+++ .|.+++++.+. .++++|++.....| ...|+..+.+ .++..++....|.+
T Consensus 115 ~~~g~~v~~v~~------~d~~~l~~~i~-~~tklV~le~p~np~g~~~dl~~I~~-----la~~~gi~livD~a 177 (380)
T TIGR01325 115 PRFGIEVSFVDP------TDLNAWEAAVK-PNTKLVFVETPSNPLGELVDIAALAE-----LAHAIGALLVVDNV 177 (380)
T ss_pred HHhCCEEEEECC------CCHHHHHHhcC-CCceEEEEECCCCCCCeeeCHHHHHH-----HHHHcCCEEEEECC
Confidence 12222222 15677766543 47899998766544 5567766665 33334455555544
No 62
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=91.26 E-value=0.37 Score=45.04 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccc-CCChhHHHHHHHhhc--------------cCccc----------ccceeee
Q psy10666 22 DEIEIVAQQRSLKAFNLDPEQWGCNVQP-YSGSPANFAVYTGLK--------------ISATS----------IFFESLP 76 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~~~w~~nvqp-~SG~~An~av~~al~--------------~s~~g----------~~~~~~~ 76 (240)
+++-+-+.+...++|+++.+ +|-. -|||.|+..++.++. ..|.+ .-.++..
T Consensus 46 ~~~~~~~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~ 121 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSR----EIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTY 121 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEE
Confidence 34444566667789999863 3443 455778887766640 01111 1145666
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++++ ++.+|.+++++.+. .++++|++-....+ ...|+..+.+ .++..++....|..+
T Consensus 122 v~~~~-~~~~d~~~l~~~l~-~~~~lv~v~~~~n~tG~~~~~~~I~~-----l~~~~g~~livD~a~ 181 (402)
T TIGR02006 122 LPPKS-NGLIDLEELKAAIR-DDTILVSIMHVNNEIGVIQDIAAIGE-----ICRERKVFFHVDAAQ 181 (402)
T ss_pred EccCC-CCcCCHHHHHHhcC-CCCEEEEEECCCcCceecccHHHHHH-----HHHHcCCEEEEEcch
Confidence 77774 57899999998764 36787766544332 3356666655 344445555555544
No 63
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=91.24 E-value=0.62 Score=42.53 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcCCCCCCcccccccC-CChhHHHHHHHhh-c---------cCccc----------c-cceeeeccccCCC
Q psy10666 26 IVAQQRSLKAFNLDPEQWGCNVQPY-SGSPANFAVYTGL-K---------ISATS----------I-FFESLPYKVNTET 83 (240)
Q Consensus 26 ~la~~r~~~lF~a~~~~w~~nvqp~-SG~~An~av~~al-~---------~s~~g----------~-~~~~~~y~~d~~~ 83 (240)
.-+.+.+.++|+++.+ -+|-.. ||+.|+..++.++ . .++.+ . -.++..+++++ +
T Consensus 47 ~~~~~~la~~~~~~~~---~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~ 122 (376)
T TIGR01977 47 EETRQLLAKLFNAPSS---AHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN-E 122 (376)
T ss_pred HHHHHHHHHHhCcCCC---CeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-C
Confidence 3455677889998642 145543 6678888888876 0 11111 0 14566677774 5
Q ss_pred cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
+.+|.+++++.+. .+|++|++-....+ ...|+..+.+ .++..++....|.++-
T Consensus 123 ~~~d~~~l~~~~~-~~~~~v~~~~~~n~tG~~~~~~~i~~-----l~~~~~~~livD~a~~ 177 (376)
T TIGR01977 123 GLISPERIKRAIK-TNTKLIVVSHASNVTGTILPIEEIGE-----LAQENGIFFILDAAQT 177 (376)
T ss_pred CCcCHHHHHHhcC-CCCeEEEEECCCCCccccCCHHHHHH-----HHHHcCCEEEEEhhhc
Confidence 7899999998774 47888877554333 4566666655 2344455665665553
No 64
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=91.21 E-value=0.83 Score=41.76 Aligned_cols=102 Identities=13% Similarity=-0.084 Sum_probs=61.9
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-c-----Ccccc--------cceeeec
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-I-----SATSI--------FFESLPY 77 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-~-----s~~g~--------~~~~~~y 77 (240)
+-++.+.+|+ +.+.+++||+++.+.- .-+=.-|||.|+.++..+| + + ++... -.++...
T Consensus 30 ~~~~~~~~~~-~r~~la~l~~~~~~~~-~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v 107 (363)
T TIGR02326 30 DSDYNIVVEQ-IRQQLLALATAEEGYT-SVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVV 107 (363)
T ss_pred ChHHHHHHHH-HHHHHHHHhCCCCCce-EEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEE
Confidence 3455555555 6688889999974100 1234578899999999998 1 0 11111 1456666
Q ss_pred cccCCCcccChHHHHHHHHhh-CCCEEEEeccc--ccchhhhhhhhh
Q psy10666 78 KVNTETGLIDYDKLAESARLF-KPRLIIAETIE--DLKLLTKVLLEE 121 (240)
Q Consensus 78 ~~d~~~~~ID~d~~~~~a~~~-kPkLIi~G~S~--y~r~~d~~~l~E 121 (240)
++++ ++.+|.|++++.+... +++++.+-... .-...|+..+.+
T Consensus 108 ~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~ 153 (363)
T TIGR02326 108 DTGE-VEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAK 153 (363)
T ss_pred eCCC-CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHH
Confidence 6763 5779999999987653 45655443322 223456666655
No 65
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=91.13 E-value=0.57 Score=45.37 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHh---h----------cc-----Cccc-------ccceeeec
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTG---L----------KI-----SATS-------IFFESLPY 77 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~a---l----------~~-----s~~g-------~~~~~~~y 77 (240)
++..-.++.+++++|++. +.+.|-+|+.++++.+.+ + ++ .|.. .-.+++.+
T Consensus 113 el~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v 188 (481)
T PRK04366 113 ELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEI 188 (481)
T ss_pred HHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEe
Confidence 455556788899999986 799999998877664332 1 00 0111 11567777
Q ss_pred cccCCCcccChHHHHHHHHhhCCCEEEEecccccch--hhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 78 KVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKL--LTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 78 ~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~--~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
|+++ ++.+|.+++++.+.. +.++|++...+.... .|+..+.+ .++..++...+|.++.
T Consensus 189 ~~~~-~~~~D~e~L~~~i~~-~t~~V~v~~Pn~tG~~~~dl~eI~~-----~a~~~gal~iVD~a~~ 248 (481)
T PRK04366 189 PSNE-DGLVDLEALKAAVGE-DTAALMLTNPNTLGLFERNILEIAE-----IVHEAGGLLYYDGANL 248 (481)
T ss_pred ecCC-CCCcCHHHHHhhccc-CCeEEEEeCCCCccccchHHHHHHH-----HHHHcCCEEEEEecCh
Confidence 7863 578999999887643 567776655442222 25666655 4455566666676664
No 66
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=91.06 E-value=0.89 Score=40.86 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc-----cc--ceeeeccccCCCcccChHHHH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS-----IF--FESLPYKVNTETGLIDYDKLA 92 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g-----~~--~~~~~y~~d~~~~~ID~d~~~ 92 (240)
+.+.++++.+. ++-..||+.++++++.++ .| .+.. .. .++..++ .+|+|.++
T Consensus 68 ~~la~~~~~~~-----~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~------~~d~~~l~ 136 (360)
T TIGR00858 68 EELAEWKGTEA-----ALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYR------HNDVEHLE 136 (360)
T ss_pred HHHHHHhCCCC-----EEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEec------CCCHHHHH
Confidence 55556677654 788899999999887776 11 1111 00 1222222 37999999
Q ss_pred HHHHhh---CCCEEEEecccccc--hhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 93 ESARLF---KPRLIIAETIEDLK--LLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 93 ~~a~~~---kPkLIi~G~S~y~r--~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
+.+.+. ++++|+++....+- ..|..++.+ .++..++....|..+.
T Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~-----l~~~~~~~li~De~~~ 186 (360)
T TIGR00858 137 RLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVA-----LAERYGAWLMVDDAHG 186 (360)
T ss_pred HHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHH-----HHHHcCcEEEEECccc
Confidence 988764 57888887643321 345655555 3344455555565543
No 67
>PLN02721 threonine aldolase
Probab=90.90 E-value=0.75 Score=41.44 Aligned_cols=84 Identities=23% Similarity=0.135 Sum_probs=54.1
Q ss_pred CcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-c----------cCccc--------c--
Q psy10666 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K----------ISATS--------I-- 70 (240)
Q Consensus 12 ~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~----------~s~~g--------~-- 70 (240)
..||+.. .+++|+. +.++|+++. .+-..|||.++++++.++ . .+|.+ .
T Consensus 35 ~~~~~~~--~~~l~~~----la~~~~~~~-----~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~ 103 (353)
T PLN02721 35 VLGYDPT--ALRLEEE----MAKIFGKEA-----ALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLG 103 (353)
T ss_pred ccCCCHH--HHHHHHH----HHHHhCCce-----eEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhc
Confidence 3445333 5666644 456678776 244468999999888876 1 11110 0
Q ss_pred cceeeeccccCCCcccChHHHHHHHHh------hCCCEEEEec
Q psy10666 71 FFESLPYKVNTETGLIDYDKLAESARL------FKPRLIIAET 107 (240)
Q Consensus 71 ~~~~~~y~~d~~~~~ID~d~~~~~a~~------~kPkLIi~G~ 107 (240)
-.++..+|.+ +++.+|+|++++.+.+ -++++|++..
T Consensus 104 g~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~ 145 (353)
T PLN02721 104 GVHPRTVKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLICLEN 145 (353)
T ss_pred CceeEecCCC-cCCCcCHHHHHHHHHhccCCCCCcceEEEEec
Confidence 1456667776 4578999999998875 3788888755
No 68
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=90.90 E-value=0.24 Score=46.54 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=65.4
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCccccc--cee-eeccccCCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSIF--FES-LPYKVNTET 83 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~~--~~~-~~y~~d~~~ 83 (240)
|+..++++|+ ...+++++++ + +=.-||+.|+.+++.++ + .++.+.. ++. ..+++....
T Consensus 51 ~np~~~~lE~----~lA~l~g~~~----~-l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~ 121 (385)
T PRK08574 51 ENPTLRPLEE----ALAKLEGGVD----A-LAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVL 121 (385)
T ss_pred CCccHHHHHH----HHHHHhCCCc----E-EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEE
Confidence 4445667664 4556688886 3 44579999999999887 1 1222211 110 122222111
Q ss_pred cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
..+|.+++++.+...++|+|++.....| ...|+..+.+ .++..++....|.++
T Consensus 122 ~~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~-----la~~~gi~livD~t~ 176 (385)
T PRK08574 122 AYPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAK-----AAKELGAILVVDNTF 176 (385)
T ss_pred ECCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 2357888888777668999998665554 3567766655 344455555566554
No 69
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=90.67 E-value=1.6 Score=38.69 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=62.3
Q ss_pred CcccCCcccHHHHHHHHHHHHHhhcCCCCCCccccc-ccCCChhHHHHHHHhhc-----c-----Cccc-------ccce
Q psy10666 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNV-QPYSGSPANFAVYTGLK-----I-----SATS-------IFFE 73 (240)
Q Consensus 12 ~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nv-qp~SG~~An~av~~al~-----~-----s~~g-------~~~~ 73 (240)
...|.....++++|+...+.....++..... .++ -..||+.|+.+++.++. | .+.+ .-++
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~ 106 (350)
T cd00609 29 LLGYYPDPGLPELREAIAEWLGRRGGVDVPP--EEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAE 106 (350)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 3556666778899988888888777621100 123 34567888888888881 1 1111 1157
Q ss_pred eeeccccCCCcccCh--HHHHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 74 SLPYKVNTETGLIDY--DKLAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 74 ~~~y~~d~~~~~ID~--d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+..++++++. .+|. +.++ .+...+|++|++-....+ ...|...+.+
T Consensus 107 ~~~i~~~~~~-~~~~~~~~~~-~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~ 156 (350)
T cd00609 107 VVPVPLDEEG-GFLLDLELLE-AAKTPKTKLLYLNNPNNPTGAVLSEEELEE 156 (350)
T ss_pred EEEEeccccc-CCccCHHHHH-hhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence 7788887544 3433 3433 345678899888664443 3345444443
No 70
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=90.52 E-value=0.65 Score=42.87 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-------------ccCccc-----------ccceeee
Q psy10666 22 DEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-------------KISATS-----------IFFESLP 76 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-------------~~s~~g-----------~~~~~~~ 76 (240)
.++-.-+.+.+.++|+++.+ +|-..+| +.++..+..++ ..++.+ .-.++..
T Consensus 59 ~~~~~~l~~~ia~~~~~~~~----~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~ 134 (397)
T TIGR01976 59 DQVVDDAREAVADLLNADPP----EVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKW 134 (397)
T ss_pred HHHHHHHHHHHHHHcCCCCC----eEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEE
Confidence 34445566677789999863 4544444 44544444443 111111 1156677
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEe-ccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAE-TIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G-~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
++++++++.+|.+++++.+. .++++|++- .++.. ...|+..+.+ ..+..++...+|..
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~-~~~~lv~i~~~~n~tG~~~~~~~i~~-----~~~~~~~~~ivD~a 194 (397)
T TIGR01976 135 ARVDEATGELHPDDLASLLS-PRTRLVAVTAASNTLGSIVDLAAITE-----LVHAAGALVVVDAV 194 (397)
T ss_pred EeccccCCCcCHHHHHHhcC-CCceEEEEeCCCCCCCccCCHHHHHH-----HHHHcCCEEEEehh
Confidence 78887668899999988775 367876654 33322 4467777766 33444454444443
No 71
>PRK09082 methionine aminotransferase; Validated
Probab=90.37 E-value=1.2 Score=41.42 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=57.9
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~ 76 (240)
|+......++++...+...+.|+.+... .-+|-..+| ++|...+..++ ..++.+ .-.++++
T Consensus 63 Y~~~~G~~~lr~~~a~~l~~~~~~~~~~-~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~ 141 (386)
T PRK09082 63 YPPMTGVAALREAIAAKTARLYGRQYDA-DSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVR 141 (386)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 4433446677776777777888875310 013555555 77888887777 111211 1156888
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEe
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+++++++..+|.+++++.+. -++++|++-
T Consensus 142 ~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~ 170 (386)
T PRK09082 142 VALQPPDFRVDWQRFAAAIS-PRTRLIILN 170 (386)
T ss_pred EecCcccccCCHHHHHHhcC-ccceEEEEe
Confidence 88886678899999988765 378888774
No 72
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=90.26 E-value=0.88 Score=43.32 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=76.3
Q ss_pred CCCCCCcccCCcccH-HHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCccc-----c
Q psy10666 7 SSDEEGKYYGGNQFI-DEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATS-----I 70 (240)
Q Consensus 7 ~g~pg~ryy~G~~~i-d~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g-----~ 70 (240)
.|..|.|...|+..+ .++| +.+.+.||.+. -+=-.||=.||++++.+| ..+|.+ +
T Consensus 71 ~g~~gsR~i~G~~~~h~~LE----~~lA~f~g~e~-----al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~r 141 (388)
T COG0156 71 VGAGGSRLISGTSDLHVELE----EELADFLGAEA-----ALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIR 141 (388)
T ss_pred CCCCCcCcccCCcHHHHHHH----HHHHHHhCCCc-----EEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHH
Confidence 566788877776433 3566 34556789885 456689999999999999 233333 1
Q ss_pred cceeeeccccCCCcccChHHHHHHHHhh-----CCCEEEEecccccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 71 FFESLPYKVNTETGLIDYDKLAESARLF-----KPRLIIAETIEDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 71 ~~~~~~y~~d~~~~~ID~d~~~~~a~~~-----kPkLIi~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
+-....+.+. .-|++.+++++++. +|++|++. +.|+..=|+..|.+... ...-.+....+|.+|-++.
T Consensus 142 ls~a~~~~f~----HnD~~~Le~~l~~~~~~~~~~~~Ivte-gVfSMdGdiApL~~l~~--L~~ky~a~L~VDEAHa~Gv 214 (388)
T COG0156 142 LSRAEVRRFK----HNDLDHLEALLEEARENGARRKLIVTE-GVFSMDGDIAPLPELVE--LAEKYGALLYVDEAHAVGV 214 (388)
T ss_pred hCCCcEEEec----CCCHHHHHHHHHhhhccCCCceEEEEe-ccccCCCCcCCHHHHHH--HHHHhCcEEEEEccccccc
Confidence 1222222221 37889999998884 26776666 46666666665555221 1122224555667777776
Q ss_pred hh
Q psy10666 146 IK 147 (240)
Q Consensus 146 I~ 147 (240)
+-
T Consensus 215 ~G 216 (388)
T COG0156 215 LG 216 (388)
T ss_pred cC
Confidence 63
No 73
>PRK12414 putative aminotransferase; Provisional
Probab=89.93 E-value=1.6 Score=40.49 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=58.7
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESL 75 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~ 75 (240)
.|+...-..++.+...+..+++||+++..- -+|-..+| ++|...++.++ ..++.+ .-.+++
T Consensus 61 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 139 (384)
T PRK12414 61 QYAPMAGIAALREALAEKTERLYGARYDPA-SEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPV 139 (384)
T ss_pred CcCCCCCcHHHHHHHHHHHHHHhCCCCCCC-CcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEE
Confidence 355444467777777778888899863100 13544455 56666777776 112221 115678
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEe
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
.+++++++..+|.+++++.+. .++|+|++-
T Consensus 140 ~v~~~~~~~~~d~~~l~~~l~-~~~~~v~i~ 169 (384)
T PRK12414 140 AIKLSPEDFRVNWDEVAAAIT-PRTRMIIVN 169 (384)
T ss_pred EEecCccccccCHHHHHhhcC-cccEEEEEc
Confidence 888887677899999988765 478988874
No 74
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=89.67 E-value=0.81 Score=43.88 Aligned_cols=104 Identities=20% Similarity=0.167 Sum_probs=64.9
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc--cc---------ceee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS--IF---------FESL 75 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g--~~---------~~~~ 75 (240)
|+..++++| ++..+++++++ + +=--||+.|+.+++.+| +| .+.+ .+ .++.
T Consensus 62 ~~p~~~~le----~~lA~l~g~~~----a-v~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~ 132 (433)
T PRK08134 62 SNPTVAVLE----ERVAALEGGVG----A-IATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETT 132 (433)
T ss_pred cChHHHHHH----HHHHHHhCCCc----E-EEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEE
Confidence 344466665 34557789988 3 66889999999999887 11 1211 00 2222
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.+++ + |.|++++.+. .++|+|++..-..+ ...|+..+.+ ..+..++....|.+.
T Consensus 133 ~vd~--~----d~~~l~~~i~-~~TklV~~e~~~np~g~v~Di~~I~~-----la~~~gi~livD~t~ 188 (433)
T PRK08134 133 FVKP--G----DIDGWRAAIR-PNTRLLFGETLGNPGLEVLDIPTVAA-----IAHEAGVPLLVDSTF 188 (433)
T ss_pred EECC--C----CHHHHHHhcC-CCCeEEEEECCCcccCcccCHHHHHH-----HHHHcCCEEEEECCC
Confidence 2222 1 6778777654 47899988765555 4478887777 455566666666554
No 75
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=89.62 E-value=0.59 Score=43.93 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCC-----CcccccccCCChhHHHHHHHhh-----------c---c----------Ccc
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPE-----QWGCNVQPYSGSPANFAVYTGL-----------K---I----------SAT 68 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~-----~w~~nvqp~SG~~An~av~~al-----------~---~----------s~~ 68 (240)
+-...+||..++.-..+|||.+.+ .+ .-+=-.+||.||+..+.+- . . .|.
T Consensus 74 ~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~-~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~ 152 (373)
T PF00282_consen 74 SPAATEIEREVIRWLADLFGLPESFTFSKDA-GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY 152 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHTTGSGGTTSTTTS-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T
T ss_pred ccccccchHHHHHHHHHHhCCcccccccCCC-ceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 344789999999999999999821 12 3444467899999887665 0 0 011
Q ss_pred c------cc-ceeeeccccCCCcccChHHHHHHHHhhC-----CC-EEE-EecccccchhhhhhhhhhhHHHHHhhHHHH
Q psy10666 69 S------IF-FESLPYKVNTETGLIDYDKLAESARLFK-----PR-LII-AETIEDLKLLTKVLLEETSKWRIKHNREIR 134 (240)
Q Consensus 69 g------~~-~~~~~y~~d~~~~~ID~d~~~~~a~~~k-----Pk-LIi-~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr 134 (240)
+ .+ +.+...|+|+ ++.+|.+++++.+.+.. |= ++. +|....--.-|+.++.+ +....++.
T Consensus 153 S~~Kaa~~lGlg~~~I~~~~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~-----i~~~~~~w 226 (373)
T PF00282_consen 153 SIEKAARILGLGVRKIPTDE-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIAD-----ICEKYNIW 226 (373)
T ss_dssp HHHHHHHHTTSEEEEE-BBT-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHH-----HHHHCT-E
T ss_pred HHHHhcceeeeEEEEecCCc-chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhh-----hcccccee
Confidence 1 11 5688889996 68999999998877642 52 222 33333333344666666 33334455
Q ss_pred hhhCC
Q psy10666 135 DLYNE 139 (240)
Q Consensus 135 ~~~d~ 139 (240)
..+|+
T Consensus 227 lHVDa 231 (373)
T PF00282_consen 227 LHVDA 231 (373)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 55543
No 76
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=89.33 E-value=0.17 Score=25.15 Aligned_cols=10 Identities=50% Similarity=1.139 Sum_probs=4.1
Q ss_pred CCCCCCCCCc
Q psy10666 177 RRPRGRPKNR 186 (240)
Q Consensus 177 kR~rGRPrkr 186 (240)
+|+||||++.
T Consensus 1 ~r~RGRP~k~ 10 (13)
T PF02178_consen 1 KRKRGRPRKN 10 (13)
T ss_dssp S--SS--TT-
T ss_pred CCcCCCCccc
Confidence 5789999874
No 77
>PLN02880 tyrosine decarboxylase
Probab=89.24 E-value=0.77 Score=44.76 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCc-----ccccccCCChhHHHHHHHhhc----------------c--C---cc-----
Q psy10666 20 FIDEIEIVAQQRSLKAFNLDPEQW-----GCNVQPYSGSPANFAVYTGLK----------------I--S---AT----- 68 (240)
Q Consensus 20 ~id~iE~la~~r~~~lF~a~~~~w-----~~nvqp~SG~~An~av~~al~----------------~--s---~~----- 68 (240)
..-+||..+++-+.+|||.+..-| +-.++ -+||.||+.++.+-+ + | |.
T Consensus 119 ~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~t-sggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Ka 197 (490)
T PLN02880 119 AATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQ-GTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKA 197 (490)
T ss_pred ccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEc-CccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHH
Confidence 467899999999999999874311 12233 567999987765540 0 1 11
Q ss_pred ----ccc-ceeeeccccC-CCcccChHHHHHHHHhh-----CCCEEE--EecccccchhhhhhhhhhhHHHHHhhHHHHh
Q psy10666 69 ----SIF-FESLPYKVNT-ETGLIDYDKLAESARLF-----KPRLII--AETIEDLKLLTKVLLEETSKWRIKHNREIRD 135 (240)
Q Consensus 69 ----g~~-~~~~~y~~d~-~~~~ID~d~~~~~a~~~-----kPkLIi--~G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~ 135 (240)
|.- -++...|+|+ +++.+|.++|++.+.+. .|-+|+ +|....--.-|+.++.+ ..+..++..
T Consensus 198 a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~-----i~~~~~iwl 272 (490)
T PLN02880 198 CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGK-----IAKSNGMWF 272 (490)
T ss_pred HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHH-----HHHHcCCEE
Confidence 111 1356678875 35789999999988754 376554 35555555567888877 445556666
Q ss_pred hhCCCc
Q psy10666 136 LYNEPD 141 (240)
Q Consensus 136 ~~d~s~ 141 (240)
.+|+++
T Consensus 273 HVDaA~ 278 (490)
T PLN02880 273 HVDAAY 278 (490)
T ss_pred EEehhh
Confidence 666554
No 78
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=89.01 E-value=0.78 Score=42.28 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-c------c-----Ccc---------cc--cceeeec
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K------I-----SAT---------SI--FFESLPY 77 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~------~-----s~~---------g~--~~~~~~y 77 (240)
+.++-.-..+.++++|+++.++ +.+.+-+|+.++.+++.++ . | .|. +. -.++..+
T Consensus 62 ~~~~~~~~~~~la~~~g~~~~~--v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v 139 (398)
T cd00613 62 RLQALFELQTMLCELTGMDVAN--ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEV 139 (398)
T ss_pred HHHHHHHHHHHHHHHHCCCccc--eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEe
Confidence 3455555667777889987421 5566666666777777765 1 1 011 10 0456677
Q ss_pred cccCCCcccChHHHHHHHHhhCCCEEEEeccccc-chhhh-hhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 78 KVNTETGLIDYDKLAESARLFKPRLIIAETIEDL-KLLTK-VLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 78 ~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~-r~~d~-~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
++++ ++.+|.+++++.+. .++++|++-..... ...|+ .++.+ .++..++...+|..+
T Consensus 140 ~~~~-~~~~d~~~l~~~i~-~~t~~viv~~~~~~G~~~~~l~~i~~-----la~~~g~~livD~~~ 198 (398)
T cd00613 140 PSDE-GGTVDLEALKEEVS-EEVAALMVQYPNTLGVFEDLIKEIAD-----IAHSAGALVYVDGDN 198 (398)
T ss_pred ccCC-CCCcCHHHHHHhcC-CCeEEEEEECCCCCceecchHHHHHH-----HHHhcCCEEEEEecc
Confidence 7764 46899999988764 35777666544322 22444 55655 345556666666544
No 79
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=88.94 E-value=1.1 Score=42.65 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhhcCCCCC----CcccccccCCChhHHHHH--HHhh-----c--cC------cc---
Q psy10666 11 EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPE----QWGCNVQPYSGSPANFAV--YTGL-----K--IS------AT--- 68 (240)
Q Consensus 11 g~ryy~G~~~id~iE~la~~r~~~lF~a~~~----~w~~nvqp~SG~~An~av--~~al-----~--~s------~~--- 68 (240)
..++|-+ |+-+.....+-++-|||.++. ..-+-+|-++||=|.... |.+- . || |.
T Consensus 61 ~~k~Yl~---i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If 137 (396)
T COG1448 61 KTKNYLP---IEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIF 137 (396)
T ss_pred cccccCC---cCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHH
Confidence 4566666 334555666677788997741 112788999999876543 3332 1 22 22
Q ss_pred -cccceeeeccc-cCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhhhhHHHH
Q psy10666 69 -SIFFESLPYKV-NTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEETSKWRI 127 (240)
Q Consensus 69 -g~~~~~~~y~~-d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E~~~w~~ 127 (240)
..-+++..||+ |+++..+|+|.+...+....+.-|++=-.|+--|..+..-.| .|..
T Consensus 138 ~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~--qW~~ 196 (396)
T COG1448 138 EAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEE--QWQE 196 (396)
T ss_pred HhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHH--HHHH
Confidence 23389999996 777888999999887777777666665666655544332222 5764
No 80
>PLN02242 methionine gamma-lyase
Probab=88.91 E-value=1.4 Score=42.02 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=63.4
Q ss_pred cC--CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Ccccc--cc-e--eeec
Q psy10666 15 YG--GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSI--FF-E--SLPY 77 (240)
Q Consensus 15 y~--G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~--~~-~--~~~y 77 (240)
|+ ++-.+.++|+. +.+++|+++ +. =--||++|+.+++.+| +| .+.+. .+ . ...+
T Consensus 70 Y~r~~~Pt~~~LE~~----lA~l~g~~~----~l-~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~ 140 (418)
T PLN02242 70 YSRHFNPTVLNLGRQ----MAALEGTEA----AY-CTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKC 140 (418)
T ss_pred ccCCCChhHHHHHHH----HHHHhCCCe----EE-EEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhcc
Confidence 66 56666666643 446789987 33 4689999999999987 11 01110 00 0 0012
Q ss_pred cccCC-CcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 78 KVNTE-TGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 78 ~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
++... -...|.+++++.+...++|+|++.....| ...|+..+.+ .++..++....|.+.
T Consensus 141 G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~-----la~~~gi~livDea~ 202 (418)
T PLN02242 141 NITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELAR-----IAHEKGVTVVVDNTF 202 (418)
T ss_pred CceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHH-----HHHHhCCEEEEECCC
Confidence 22110 01237888887765556888887755443 3456666655 334445555555443
No 81
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=88.81 E-value=5.1 Score=37.23 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=58.6
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESL 75 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~ 75 (240)
+|+...-.+++++...+....-++.....- -+|-..+| ++|+..++.++ ...+.+ .-.+++
T Consensus 62 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~ 140 (391)
T PRK07309 62 HYTGMAGLLELRQAAADFVKEKYNLDYAPE-NEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIV 140 (391)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEE
Confidence 465555567887777777766666532100 14555555 67877888877 111221 115678
Q ss_pred eccccCCCcccChHHHHHHHHhh--CCCEEEEe
Q psy10666 76 PYKVNTETGLIDYDKLAESARLF--KPRLIIAE 106 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~--kPkLIi~G 106 (240)
.+++++++..+|.|++++.+... ++++|++-
T Consensus 141 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~ 173 (391)
T PRK07309 141 EIDTTENDFVLTPEMLEKAILEQGDKLKAVILN 173 (391)
T ss_pred EEecCCcCCcCCHHHHHHHhhccCCCeEEEEEE
Confidence 88887666689999999887764 57888875
No 82
>PRK08361 aspartate aminotransferase; Provisional
Probab=88.78 E-value=4.6 Score=37.44 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=56.1
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESL 75 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~ 75 (240)
.|+......++++...+...+.|+..... -+|-..+| ++|+..++.++ ...+.+ .-.+++
T Consensus 65 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~ 142 (391)
T PRK08361 65 HYTPNAGIPELREAIAEYYKKFYGVDVDV--DNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPI 142 (391)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCc--ccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEE
Confidence 35444556778776667777777643210 14444454 66878788777 111211 115778
Q ss_pred eccccCC-CcccChHHHHHHHHhhCCCEEEEec
Q psy10666 76 PYKVNTE-TGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 76 ~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
.+|++++ +..+|.+.+++.+.. +++++++-.
T Consensus 143 ~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~i~~ 174 (391)
T PRK08361 143 RIPLREENEFQPDPDELLELITK-RTRMIVINY 174 (391)
T ss_pred EEecCCccCCCCCHHHHHHhccc-ccEEEEEeC
Confidence 8888865 457999999887654 577777653
No 83
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=88.60 E-value=0.63 Score=42.68 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc--ceeeeccccCCCcccChHHH
Q psy10666 24 IEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF--FESLPYKVNTETGLIDYDKL 91 (240)
Q Consensus 24 iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~--~~~~~y~~d~~~~~ID~d~~ 91 (240)
+-....+.+.++|+.+. ++-..||+.|+++++.++ .| .+.+.. +.....++.. -..+|.+++
T Consensus 79 l~~~l~~~l~~~~g~~~-----~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~d~~~l 152 (385)
T TIGR01825 79 LHEELEEKLAKFKKTEA-----ALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKI-YKHADMDDL 152 (385)
T ss_pred HHHHHHHHHHHHhCCCc-----EEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEE-eCCCCHHHH
Confidence 33344455567788764 577889999999888887 11 111110 0110011110 125899999
Q ss_pred HHHHHhh---CCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 92 AESARLF---KPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 92 ~~~a~~~---kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
++.+.+. +.++|+++....+ ...|+..+.+ .++..++....|..+
T Consensus 153 ~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~-----l~~~~~~~li~De~~ 202 (385)
T TIGR01825 153 DRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVE-----LAERYGAVTYVDDAH 202 (385)
T ss_pred HHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHH-----HHHHhCCEEEEECcc
Confidence 8876653 5788888763332 2345555555 334445555555544
No 84
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=88.58 E-value=2 Score=39.43 Aligned_cols=115 Identities=19% Similarity=0.146 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccc-ccCCChhHHHHHHHhh--ccC-----------ccc-----------ccceee
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNV-QPYSGSPANFAVYTGL--KIS-----------ATS-----------IFFESL 75 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nv-qp~SG~~An~av~~al--~~s-----------~~g-----------~~~~~~ 75 (240)
..++=+-|.+.+.++||++.. -+| =..|+|.|+.++..++ ..+ +.+ .-.++.
T Consensus 41 ~~~~~~~~r~~la~~lg~~~~---~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~ 117 (371)
T PF00266_consen 41 FAEILEEAREALAKLLGAPPD---EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVR 117 (371)
T ss_dssp HHHHHHHHHHHHHHHHTSSTT---EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEE
T ss_pred hhHHHHHHHHHHHHhcCCccc---cccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 344445578889999999972 144 3566677888888887 111 111 115666
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEecccc--cchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIED--LKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y--~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
..++++ ++.+|.+++++.+. .+++++++-...+ -...|+..+.+ .++..++...+|..+-++.
T Consensus 118 ~i~~~~-~~~~~~~~~~~~l~-~~~~lv~~~~~~~~tG~~~pi~~I~~-----~~~~~~~~~~vD~~~~~g~ 182 (371)
T PF00266_consen 118 VIPADP-GGSLDLEDLEEALN-PDTRLVSISHVENSTGVRNPIEEIAK-----LAHEYGALLVVDAAQSAGC 182 (371)
T ss_dssp EEEEGT-TSSCSHHHHHHHHH-TTESEEEEESBETTTTBBSSHHHHHH-----HHHHTTSEEEEE-TTTTTT
T ss_pred cccccc-cchhhhhhhhhhhc-cccceEEeecccccccEEeeeceehh-----hhhccCCceeEechhcccc
Confidence 677774 47899999999886 8999987766544 34567777765 4455577777776654443
No 85
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=88.47 E-value=1.4 Score=40.67 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc----------cCccccc-----
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK----------ISATSIF----- 71 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~----------~s~~g~~----- 71 (240)
.|..|.|...|+. +.+|++ .+.+.++|+++. + +=.-||+.||+++..++. ..|.+.+
T Consensus 43 ~~~~gs~~~~g~~--~~~~~~-e~~la~~~~~~~----~-l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~ 114 (370)
T PRK05937 43 LGYGGSRAILGPS--SLLDDL-EHKIAHFHGAPE----A-FIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV 114 (370)
T ss_pred CCCCCcCcccCCh--HHHHHH-HHHHHHHhCCCe----E-EEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH
Confidence 4556677666642 223332 455667899986 4 778999999999887761 1111110
Q ss_pred c--eeeeccccCCCcccChHHHHHHHHhhC----CC-EEE-Eeccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 72 F--ESLPYKVNTETGLIDYDKLAESARLFK----PR-LII-AETIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 72 ~--~~~~y~~d~~~~~ID~d~~~~~a~~~k----Pk-LIi-~G~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
. ....| ..+|.|.+++++...+ ++ +|+ .+.++.. -..|+.++.+ ..+..++...+|.++.
T Consensus 115 ~~~~~~~~------~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~-----l~~~~~~~livDea~~ 183 (370)
T PRK05937 115 ISGWHQSF------RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIA-----LSKKYHAHLIVDEAHA 183 (370)
T ss_pred cCCceEEe------cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHH-----HHHHcCCEEEEECCcc
Confidence 1 11223 2479999999887542 23 443 4444433 3466777766 3444566777787776
Q ss_pred hhhh
Q psy10666 143 VGEI 146 (240)
Q Consensus 143 l~~I 146 (240)
.+.+
T Consensus 184 ~G~~ 187 (370)
T PRK05937 184 MGIF 187 (370)
T ss_pred cccc
Confidence 5543
No 86
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=88.44 E-value=0.95 Score=43.52 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=63.5
Q ss_pred HHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Ccccc----------c-ceeeeccccCCCccc
Q psy10666 28 AQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSI----------F-FESLPYKVNTETGLI 86 (240)
Q Consensus 28 a~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~----------~-~~~~~y~~d~~~~~I 86 (240)
..++..+++|+++ .|-.-||+.|+.+++.++ +| .+.+. + .++..++ ++ .
T Consensus 74 le~~la~l~g~~~-----~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~----~ 143 (437)
T PRK05613 74 LENRIASLEGGVH-----AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NP----D 143 (437)
T ss_pred HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CC----C
Confidence 3455667788886 789999999999999887 11 12211 0 2333333 22 2
Q ss_pred ChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 87 DYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 87 D~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
|.+++++.+. .++++|++.....+ ...|+..+.+ .++..++...+|.+...+
T Consensus 144 d~e~l~~~l~-~~tk~V~~e~~~Np~~~v~di~~I~~-----la~~~gi~livD~t~a~g 197 (437)
T PRK05613 144 DPESWQAAVQ-PNTKAFFGETFANPQADVLDIPAVAE-----VAHRNQVPLIVDNTIATA 197 (437)
T ss_pred CHHHHHHhCC-ccCeEEEEECCCCCCCcccCHHHHHH-----HHHHcCCeEEEECCCccc
Confidence 7788877654 35788887554433 3578888877 456666777777665433
No 87
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=88.42 E-value=0.94 Score=43.11 Aligned_cols=130 Identities=21% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----------cc--C---ccc-
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----------KI--S---ATS- 69 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----------~~--s---~~g- 69 (240)
-|.|-.=+.-|.+ ..++=+-|.+...++.|++.. =-+---+||.+|-.+..+. |+ | |..
T Consensus 29 fgNPsS~H~~G~~-A~~~ve~AR~~iA~llga~~~---eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aV 104 (386)
T COG1104 29 FGNPSSLHSFGRE-ARKAVEEAREQIAKLLGADPE---EIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAV 104 (386)
T ss_pred cCCccchhHhHHH-HHHHHHHHHHHHHHHhCCCCC---eEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHH
Confidence 4666654445766 555556688899999999983 1334555688877666552 11 1 111
Q ss_pred ---------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccc-cchhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 70 ---------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIED-LKLLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 70 ---------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y-~r~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
.-|++...|||+ +|.||.+++++.++..-.=+-|.-..+. --..|+.++.+ ..++..+.-.+|+
T Consensus 105 l~~~~~Le~~g~~Vtyl~V~~-~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~-----i~k~~~i~fHvDA 178 (386)
T COG1104 105 LNTCRYLERQGFEVTYLPVDS-NGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGE-----ICKERGILFHVDA 178 (386)
T ss_pred HHHHHHHHhcCCeEEEeCCCC-CCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHH-----HHHHcCCeEEEeh
Confidence 238999999996 7999999999977633221112222222 24457777777 5566667777776
Q ss_pred Cchhhhh
Q psy10666 140 PDVVGEI 146 (240)
Q Consensus 140 s~Il~~I 146 (240)
....+.|
T Consensus 179 vQa~Gki 185 (386)
T COG1104 179 VQAVGKI 185 (386)
T ss_pred hhhcCce
Confidence 6666555
No 88
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=88.16 E-value=1.3 Score=41.09 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-----c----c-----Cccc-----------ccceeeecccc
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-----K----I-----SATS-----------IFFESLPYKVN 80 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-----~----~-----s~~g-----------~~~~~~~y~~d 80 (240)
-+.+.+.++|+++.. -+|-..+| +.|+..+..++ . | .|.+ .-.++..++++
T Consensus 66 ~~r~~ia~~~~~~~~---~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~ 142 (403)
T TIGR01979 66 AVREKVAKFINAASD---EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD 142 (403)
T ss_pred HHHHHHHHHhCcCCC---CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC
Confidence 455667789999831 25655555 45545555543 0 0 1111 11456677787
Q ss_pred CCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 81 TETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 81 ~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++.+|.+++++.+. .+|++|++....++ ...|+..+.+ .++..++....|.++
T Consensus 143 -~~~~~~~~~l~~~i~-~~~~lv~~~~~~~~tG~~~~~~~i~~-----~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 143 -DDGTLDLDDLEKLLT-EKTKLVAITHVSNVLGTVNPVEEIAK-----LAHQVGAKVLVDGAQ 198 (403)
T ss_pred -CCCCCCHHHHHHHhc-cCCeEEEEEcccccccccCCHHHHHH-----HHHHcCCEEEEEchh
Confidence 468899999988764 58998887754443 4567766665 334445555555544
No 89
>PRK14012 cysteine desulfurase; Provisional
Probab=87.67 E-value=1.7 Score=40.47 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=61.6
Q ss_pred HHHHHHhhcCCCCCCcccccc-cCCChhHHHHHHHhhc--------------cCccc----------ccceeeeccccCC
Q psy10666 28 AQQRSLKAFNLDPEQWGCNVQ-PYSGSPANFAVYTGLK--------------ISATS----------IFFESLPYKVNTE 82 (240)
Q Consensus 28 a~~r~~~lF~a~~~~w~~nvq-p~SG~~An~av~~al~--------------~s~~g----------~~~~~~~y~~d~~ 82 (240)
+.+.+.++|+++++ ++- .-|||.|+..++.++. ..|.+ .-.++...++|+
T Consensus 54 ~r~~ia~~~g~~~~----~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~- 128 (404)
T PRK14012 54 ARNQIADLIGADPR----EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS- 128 (404)
T ss_pred HHHHHHHHcCcCcC----eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC-
Confidence 45567789999873 343 3466778777666541 11111 014566667774
Q ss_pred CcccChHHHHHHHHhhCCCEEEEecccc--cchhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 83 TGLIDYDKLAESARLFKPRLIIAETIED--LKLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 83 ~~~ID~d~~~~~a~~~kPkLIi~G~S~y--~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
++.+|.+++++.+. .++++|++-.... -...|+..+.+ ..+..++....|.++
T Consensus 129 ~g~~d~~~l~~~i~-~~t~lv~~~~~~n~tG~~~~~~~I~~-----la~~~g~~vivD~a~ 183 (404)
T PRK14012 129 NGIIDLEKLEAAMR-DDTILVSIMHVNNEIGVIQDIAAIGE-----ICRERGIIFHVDAAQ 183 (404)
T ss_pred CCcCCHHHHHHhcC-CCCEEEEEECcCCCccchhhHHHHHH-----HHHHcCCEEEEEcch
Confidence 68899999998775 4678876654432 24456666665 334445555555544
No 90
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=87.65 E-value=1.9 Score=40.08 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=66.4
Q ss_pred CcccHHHHHHHHHHHHHhhcCC-CCCCcccccccC-CChhHHHHHHHhh---cc-----------Cccc-----------
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNL-DPEQWGCNVQPY-SGSPANFAVYTGL---KI-----------SATS----------- 69 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a-~~~~w~~nvqp~-SG~~An~av~~al---~~-----------s~~g----------- 69 (240)
|.+..+.+|. +.+.+.++||+ +.. +|-.. |+|.++..+..++ .. .+.+
T Consensus 58 ~~~~~~~~~~-~r~~la~~~g~~~~~----~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~ 132 (401)
T PRK10874 58 AQRLTARYEA-AREQVAQLLNAPDAK----NIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQ 132 (401)
T ss_pred HHHHHHHHHH-HHHHHHHHcCCCCCC----EEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHH
Confidence 4443444444 45566778999 442 44433 5577777777665 11 1111
Q ss_pred ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 70 IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 70 ~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.-.++..+++++ ++.+|.+++++.+. .+++||++-....+ ...|+.++.+ .++..++...+|..+
T Consensus 133 ~g~~v~~v~~~~-~~~~d~~~l~~~i~-~~t~lv~i~~~~n~tG~~~~~~~i~~-----l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 133 TGAKVVKLPLGA-DRLPDVDLLPELIT-PRTRILALGQMSNVTGGCPDLARAIT-----LAHQAGMVVMVDGAQ 199 (401)
T ss_pred hCCEEEEEecCC-CCcCCHHHHHHhcC-cCcEEEEEeCCcccccCcCCHHHHHH-----HHHHcCCEEEEECCc
Confidence 014667777764 57899999998774 47888877554443 4456766655 334445555566554
No 91
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=87.63 E-value=1.7 Score=40.90 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceeeeccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESLPYKV 79 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~~y~~ 79 (240)
++++| ++..+++++++ .+-.-||+.|+.+++.++ +| .+.+.+ .++..+++
T Consensus 63 ~~~le----~~la~l~g~~~-----~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 63 VTMFQ----ERLAALEGAEA-----CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 55544 34556789987 355679999999999887 11 111100 22333322
Q ss_pred cCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 80 NTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 80 d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
-|.+++++.+. .++|+|++...+.| ...|+..+.+ .++..++....|.+
T Consensus 134 ------~d~~~l~~~i~-~~tklV~ie~p~NptG~v~dl~~I~~-----la~~~gi~livD~t 184 (390)
T PRK08133 134 ------TDLDAWRAAVR-PNTKLFFLETPSNPLTELADIAALAE-----IAHAAGALLVVDNC 184 (390)
T ss_pred ------CCHHHHHHhcC-cCCeEEEEECCCCCCCCcCCHHHHHH-----HHHHcCCEEEEECC
Confidence 16677766553 47888887544333 4567766666 34445555555544
No 92
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=87.32 E-value=1.4 Score=41.86 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=58.9
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCcccc--cc-------eeeeccccCCCcccChHH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSI--FF-------ESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~--~~-------~~~~y~~d~~~~~ID~d~ 90 (240)
++..+++++++ ++-..||+.|...++.++ + ..+.+. +| ......++ .+|.++
T Consensus 67 ~~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~----~~d~~~ 137 (405)
T PRK08776 67 EALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITAD----LTDPRS 137 (405)
T ss_pred HHHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEEC----CCCHHH
Confidence 55566788876 678899999999999888 1 112220 11 11111122 257888
Q ss_pred HHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 91 LAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 91 ~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++.+. .++|+|++.....| ...|+..+.+ .++..++....|.++
T Consensus 138 l~~~i~-~~tklV~l~~P~NPtG~v~dl~~I~~-----la~~~gi~vIvD~a~ 184 (405)
T PRK08776 138 LADALA-QSPKLVLIETPSNPLLRITDLRFVIE-----AAHKVGALTVVDNTF 184 (405)
T ss_pred HHHhcC-cCCeEEEEECCCCCCCccCCHHHHHH-----HHHHcCCEEEEECCC
Confidence 887664 47899887655544 4467766665 344555666666554
No 93
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=87.09 E-value=1.6 Score=41.93 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhcCCCC--CCcccccccCCChhHHHHHHHhhc------------------c--C---ccc------c
Q psy10666 22 DEIEIVAQQRSLKAFNLDP--EQWGCNVQPYSGSPANFAVYTGLK------------------I--S---ATS------I 70 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~--~~w~~nvqp~SG~~An~av~~al~------------------~--s---~~g------~ 70 (240)
.++|+-+++-+.++||++. ++....+ --+||.||+.++.+.+ + | |.+ .
T Consensus 79 ~~le~~~~~~la~llg~~~~~~~~~g~~-TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~ 157 (431)
T TIGR01788 79 AEIENRCVNMLADLWHAPAKDAEAVGTS-TIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARY 157 (431)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCeEEE-echHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHH
Confidence 3999999999999999873 1111111 2577999987765431 0 0 110 1
Q ss_pred c-ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEe--cccccchhhhhhhhh
Q psy10666 71 F-FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAE--TIEDLKLLTKVLLEE 121 (240)
Q Consensus 71 ~-~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G--~S~y~r~~d~~~l~E 121 (240)
+ +++...|+|++++.||.+++++.+.+ +|.+|++- .+..--.-|+.++.+
T Consensus 158 lg~~v~~i~~d~~~~~vd~~~L~~~i~~-~t~lV~~t~g~t~tG~idpi~~I~~ 210 (431)
T TIGR01788 158 FDVELREVPMDPGRYVIDPEQVVEAVDE-NTIGVVCILGTTYTGEYEDVKALND 210 (431)
T ss_pred cCceeEEEecCCCceeeCHHHHHHHHhh-CCeEEEEEeCCCCCcccCCHHHHHH
Confidence 1 56777888875568999999988764 46665554 333334456777776
No 94
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=87.07 E-value=0.61 Score=44.81 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-------------ccCcc-cc-c--ceeee-ccccCCC---c
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-------------KISAT-SI-F--FESLP-YKVNTET---G 84 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-------------~~s~~-g~-~--~~~~~-y~~d~~~---~ 84 (240)
-|+++|.++|||++ ..=...| |.+|+++.+|+ |.|.- +. + ...+. +|.+++. +
T Consensus 70 eAe~~aA~~fGAd~-----t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~ 144 (417)
T PF01276_consen 70 EAEELAARAFGADK-----TFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIG 144 (417)
T ss_dssp HHHHHHHHHHTESE-----EEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BE
T ss_pred HHHHHHHHhcCCCe-----EEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCcc
Confidence 36677888999997 3444556 77999999998 22211 10 0 11111 1223222 3
Q ss_pred ccCh-----HHHHHHHHhhC----CCEEEEeccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 85 LIDY-----DKLAESARLFK----PRLIIAETIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 85 ~ID~-----d~~~~~a~~~k----PkLIi~G~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.|+. +.+++.++++. |+++++-.+.|- -..|++.+.+ ..+...+...+|.+|
T Consensus 145 ~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~-----~~h~~~~~llvDEAh 206 (417)
T PF01276_consen 145 GISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAE-----ICHKHGIPLLVDEAH 206 (417)
T ss_dssp EB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHH-----HHCCTECEEEEE-TT
T ss_pred CCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHH-----HhcccCCEEEEEccc
Confidence 5777 99988888765 344555554554 5578887776 455555566666554
No 95
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=86.98 E-value=2.5 Score=38.57 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc------Ccccc--------cceeeecc
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI------SATSI--------FFESLPYK 78 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~------s~~g~--------~~~~~~y~ 78 (240)
.+|.+.+++ +.+.++++|+++.+.- +-+=.-|||.|+.+++.+| ++ .+... -.++..++
T Consensus 33 ~~~~~~~~~-~~~~l~~l~~~~~~~~-~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~ 110 (368)
T PRK13479 33 DDFNALTAS-VRAKLVAIATGEEGYT-CVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLD 110 (368)
T ss_pred hHHHHHHHH-HHHHHHHHhCCCCCce-EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEE
Confidence 446665544 4555666888863100 1123569999999999998 11 11111 14566677
Q ss_pred ccCCCcccChHHHHHHHHhh-CCCEEEEeccc--ccchhhhhhhhh
Q psy10666 79 VNTETGLIDYDKLAESARLF-KPRLIIAETIE--DLKLLTKVLLEE 121 (240)
Q Consensus 79 ~d~~~~~ID~d~~~~~a~~~-kPkLIi~G~S~--y~r~~d~~~l~E 121 (240)
+++ ++.+|.+++++.+.+. +.++|++-... .-...|+..+.+
T Consensus 111 ~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~ 155 (368)
T PRK13479 111 TGE-DEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAA 155 (368)
T ss_pred CCC-CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHH
Confidence 764 4679999999876642 44555443332 224456666655
No 96
>PRK07777 aminotransferase; Validated
Probab=86.95 E-value=3.4 Score=38.20 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=56.6
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCC-cccccccCC-ChhHHHHHHHhh-----c-----cCccc-------cccee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQ-WGCNVQPYS-GSPANFAVYTGL-----K-----ISATS-------IFFES 74 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~-w~~nvqp~S-G~~An~av~~al-----~-----~s~~g-------~~~~~ 74 (240)
.|+......++++...+..++.|+.++.. + +|-..+ |+.|+.+++.++ + .++.+ .-.+.
T Consensus 56 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~--~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~ 133 (387)
T PRK07777 56 QYPPGPGIPELRAAIAAQRRRRYGLEYDPDT--EVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHR 133 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEE
Confidence 35544446677776667777778876421 1 243444 477888888877 1 11211 11466
Q ss_pred eeccccCC--CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 75 LPYKVNTE--TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 75 ~~y~~d~~--~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+.++++++ +..+|.+++++.+. .++++|++-
T Consensus 134 ~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~ 166 (387)
T PRK07777 134 VPVPLVPDGRGFALDLDALRAAVT-PRTRALIVN 166 (387)
T ss_pred EEeecCCccCCCcCCHHHHHHhcC-cccEEEEEc
Confidence 77888765 45699999988764 478888875
No 97
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=86.94 E-value=2.1 Score=40.22 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=67.3
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCC-ChhHHHHHHHhh--------------ccCccc----------
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYS-GSPANFAVYTGL--------------KISATS---------- 69 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~S-G~~An~av~~al--------------~~s~~g---------- 69 (240)
|.+.+..+.+|. +.+.+.++|+++.. -+|-..+ +|.|+..++.++ ...|.+
T Consensus 69 ~~~~~~~~~~~~-~r~~la~~~~~~~~---~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~ 144 (424)
T PLN02855 69 ALSAKATDAYEL-ARKKVAAFINASTS---REIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQ 144 (424)
T ss_pred hHHHHHHHHHHH-HHHHHHHHcCCCCC---CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHH
Confidence 333343444444 46777889998521 1454444 466656665542 011111
Q ss_pred -ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 70 -IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 70 -~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.-.++..++++++ +.+|.+++++.+.. +++||++.....+ ..+|+..+.+ .++..++...+|.++
T Consensus 145 ~~g~~v~~v~~~~~-~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~I~~-----l~~~~g~~vivD~a~ 212 (424)
T PLN02855 145 KTGAVLKFVGLTPD-EVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVEDIVH-----WAHAVGAKVLVDACQ 212 (424)
T ss_pred HcCCEEEEEecCCC-CCcCHHHHHHHhcc-CceEEEEeCccccccccCCHHHHHH-----HHHHcCCEEEEEhhh
Confidence 1146677778754 55999999988764 8999888765443 4466666655 344445555556544
No 98
>PRK07503 methionine gamma-lyase; Provisional
Probab=86.66 E-value=1.7 Score=40.99 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc--ce--eeeccccCCC-
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF--FE--SLPYKVNTET- 83 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~--~~--~~~y~~d~~~- 83 (240)
..+.++|+ ...+++|+++ .+-.-||+.|...++.++ +| .+.+.+ +. ...+++....
T Consensus 65 p~~~~le~----~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~v 135 (403)
T PRK07503 65 PTLALLEQ----RMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHV 135 (403)
T ss_pred chHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEe
Confidence 34666663 4557889987 355669999999888877 11 111100 10 0112221100
Q ss_pred cccChHHHHHHHHhhCCCEEEEecccc--cchhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAETIED--LKLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~S~y--~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
...|.+++++.+.. ++|+|++...+. ....|+..+.+ .++..++....|.+.
T Consensus 136 d~~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~-----la~~~gi~lIvD~a~ 189 (403)
T PRK07503 136 DLTDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAE-----IAHGAGAKVVVDNTY 189 (403)
T ss_pred CCCCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHH-----HHHHcCCEEEEECCC
Confidence 01267777776544 789999864443 35567777766 344445555566554
No 99
>PLN02590 probable tyrosine decarboxylase
Probab=86.65 E-value=2.2 Score=42.25 Aligned_cols=115 Identities=21% Similarity=0.127 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCc-----ccccccCCChhHHHHHHHhh-----c------c-------C---ccc----
Q psy10666 20 FIDEIEIVAQQRSLKAFNLDPEQW-----GCNVQPYSGSPANFAVYTGL-----K------I-------S---ATS---- 69 (240)
Q Consensus 20 ~id~iE~la~~r~~~lF~a~~~~w-----~~nvqp~SG~~An~av~~al-----~------~-------s---~~g---- 69 (240)
..-+||..+++-+.+||+.+..-| +-.+ --+||.||+.++.+- + . | |.+
T Consensus 167 a~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~-~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KA 245 (539)
T PLN02590 167 AATELEIIVLDWLAKLLQLPDHFLSTGNGGGVI-QGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKA 245 (539)
T ss_pred hhHHHHHHHHHHHHHHhCCCcccccCCCCceEE-cCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHH
Confidence 367899999999999999874211 1122 367899998877663 0 0 1 111
Q ss_pred --cc-c---eeeeccccCC-CcccChHHHHHHHHhh-----CCCEEEE--ecccccchhhhhhhhhhhHHHHHhhHHHHh
Q psy10666 70 --IF-F---ESLPYKVNTE-TGLIDYDKLAESARLF-----KPRLIIA--ETIEDLKLLTKVLLEETSKWRIKHNREIRD 135 (240)
Q Consensus 70 --~~-~---~~~~y~~d~~-~~~ID~d~~~~~a~~~-----kPkLIi~--G~S~y~r~~d~~~l~E~~~w~~~~N~eIr~ 135 (240)
.+ + ++...|+|++ ++.+|.++|++.+++- .|-+|++ |....--.-|+.++.+ ++...++..
T Consensus 246 a~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~-----i~~~~g~Wl 320 (539)
T PLN02590 246 CLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGN-----IAKKYGIWL 320 (539)
T ss_pred HHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHH-----HHHHhCCeE
Confidence 11 2 3566678753 5789999999988764 4755443 4444434445777776 344455666
Q ss_pred hhCCC
Q psy10666 136 LYNEP 140 (240)
Q Consensus 136 ~~d~s 140 (240)
.+|++
T Consensus 321 HVDaA 325 (539)
T PLN02590 321 HVDAA 325 (539)
T ss_pred EEecc
Confidence 65544
No 100
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=86.58 E-value=2.5 Score=39.28 Aligned_cols=107 Identities=8% Similarity=0.032 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-c----c-----Ccc-----------ccc--c-----
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-K----I-----SAT-----------SIF--F----- 72 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~----~-----s~~-----------g~~--~----- 72 (240)
.+++-.-+.+++.++||+++ + +=--|||.|+..++.++ + + +.+ +.+ |
T Consensus 43 ~~~~~~~~~~~~a~~~g~~~----~-~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~ 117 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVED----A-VIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVE 117 (363)
T ss_pred HHHHHHHHHHHHHHhhCCCe----E-EEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchH
Confidence 45666667788889999986 4 66678899999999987 1 0 000 000 1
Q ss_pred --------eeeeccccCCCcccChHHHHHHHHhhCCCEEEE--eccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 73 --------ESLPYKVNTETGLIDYDKLAESARLFKPRLIIA--ETIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 73 --------~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~--G~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+.+.+++ +..+|.+++++.+. .++++|++ ..+++. ...|+..+.+ .++..++....|.++
T Consensus 118 ~~~~~~g~~~v~v~~---~~~~d~~~le~ai~-~~t~ai~~v~~~~~~~g~~~~~~~i~~-----~a~~~gi~vivD~a~ 188 (363)
T TIGR01437 118 TMVRLGGGKVVEAGY---ANECSAEQLEAAIT-EKTAAILYIKSHHCVQKSMLSVEDAAQ-----VAQEHNLPLIVDAAA 188 (363)
T ss_pred HHHHhcCCeEEEEcC---CCCCCHHHHHHhcC-hhceEEEEEecCCCCcCCcCCHHHHHH-----HHHHcCCeEEEECCC
Confidence 2233333 24699999998774 56787664 223332 3567766665 445555666555443
No 101
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=86.37 E-value=2.5 Score=39.12 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCCCCCccccccc-CCChhHHHHHHHhhc---c-----------Cccc-----------ccceeeeccc
Q psy10666 26 IVAQQRSLKAFNLDPEQWGCNVQP-YSGSPANFAVYTGLK---I-----------SATS-----------IFFESLPYKV 79 (240)
Q Consensus 26 ~la~~r~~~lF~a~~~~w~~nvqp-~SG~~An~av~~al~---~-----------s~~g-----------~~~~~~~y~~ 79 (240)
.-+.+...++|+++.. -+|-. .|+|.|+..++.++. . .+.+ .-.+++.+|+
T Consensus 63 ~~~r~~la~~~g~~~~---~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 139 (398)
T TIGR03392 63 ELARQQVARFLNAPDA---ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI 139 (398)
T ss_pred HHHHHHHHHHhCCCCC---CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence 3355666788998531 14433 355777777776651 1 1111 1146777788
Q ss_pred cCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 80 NTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 80 d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
++ ++.+|.+++++.+. .++++|++-....+ ...|+.++.+ .++..++....|..
T Consensus 140 ~~-~~~~~~~~l~~~i~-~~t~lv~i~~~~n~tG~~~~~~~i~~-----~~~~~~~~~ivD~a 195 (398)
T TIGR03392 140 GA-DLLPDIRQLPELLT-PRTRILALGQMSNVTGGCPDLARAIT-----LAHQYGAVVVVDGA 195 (398)
T ss_pred CC-CCCcCHHHHHHHhc-cCceEEEEECccccccccCCHHHHHH-----HHHHcCCEEEEEhh
Confidence 75 36799999988764 46888876543333 3456666655 33444454444443
No 102
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=85.84 E-value=1.7 Score=40.46 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=57.4
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhhcc--C----------cccc-----c--ceeeeccccCCCcccChHH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKI--S----------ATSI-----F--FESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~--s----------~~g~-----~--~~~~~y~~d~~~~~ID~d~ 90 (240)
+.+.++++.+. .+-.-||+.||.+++.++.. . |... . .++..|+ ..|++.
T Consensus 97 ~~la~~~g~~~-----~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~------~~d~~~ 165 (402)
T TIGR01821 97 AELADLHGKES-----ALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFR------HNDVAH 165 (402)
T ss_pred HHHHHHhCCCe-----EEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEEC------CCCHHH
Confidence 44556678764 57789999999999887611 0 1000 0 1111222 247788
Q ss_pred HHHHHHhh---CCCEEEEecccc--cchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 91 LAESARLF---KPRLIIAETIED--LKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 91 ~~~~a~~~---kPkLIi~G~S~y--~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
++++.... ++++|++..... -...|+..+.+ .++..++...+|.++..+
T Consensus 166 l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~-----l~~~~~~~livDea~~~G 219 (402)
T TIGR01821 166 LEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICD-----LADKYGALTYLDEVHAVG 219 (402)
T ss_pred HHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHH-----HHHHcCCEEEEeCccccc
Confidence 88877653 567777665322 24456666665 344445666677776544
No 103
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=85.74 E-value=2.6 Score=39.72 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=61.8
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESL 75 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~ 75 (240)
|+..++++|+ +..+++|+++ .+=.-||+.|+.+++.+| ++ .+.+.+ .++.
T Consensus 57 ~~p~~~~le~----~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~ 127 (391)
T TIGR01328 57 GNPTVSNLEG----RIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVD 127 (391)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEE
Confidence 3344667765 4667789987 467889999999999887 11 111100 1222
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
.++++ |.+++++.+. .++++|++.....| ...|+.++.+ .++..++....|.+..
T Consensus 128 ~vd~~------d~e~l~~~i~-~~tklV~le~p~Np~G~v~dl~~I~~-----la~~~gi~livD~a~a 184 (391)
T TIGR01328 128 FINMA------IPEEVKAHIK-DNTKIVYFETPANPTMKLIDMERVCR-----DAHSQGVKVIVDNTFA 184 (391)
T ss_pred EECCC------CHHHHHHhhc-cCCeEEEEECCCCCCCcccCHHHHHH-----HHHHcCCEEEEECCCc
Confidence 22221 5677766553 46788887544433 4567777766 3444556666665543
No 104
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=85.69 E-value=3.5 Score=36.99 Aligned_cols=99 Identities=16% Similarity=0.054 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccc-cCCChhHHHHHHHhh-----c-c-----Cccc--------ccceeeecc
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQ-PYSGSPANFAVYTGL-----K-I-----SATS--------IFFESLPYK 78 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvq-p~SG~~An~av~~al-----~-~-----s~~g--------~~~~~~~y~ 78 (240)
++.+.+|.+ .+...++++++... ..+- ..|||.|+.+++.++ . + ++.. .-.++..++
T Consensus 28 ~~~~~~~~~-~~~la~~~~~~~~~--~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~ 104 (355)
T TIGR03301 28 EFNDVTDQV-RDRLLALAGGDDNH--TCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLN 104 (355)
T ss_pred HHHHHHHHH-HHHHHHHhcCCCCC--cEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEe
Confidence 344444444 45555688887520 2232 568899999999998 1 1 1111 114566677
Q ss_pred ccCCCcccChHHHHHHHHhh-CCCEEEEec--ccccchhhhhhhhh
Q psy10666 79 VNTETGLIDYDKLAESARLF-KPRLIIAET--IEDLKLLTKVLLEE 121 (240)
Q Consensus 79 ~d~~~~~ID~d~~~~~a~~~-kPkLIi~G~--S~y~r~~d~~~l~E 121 (240)
+++ +..+|.|++++.+.+. +.++++.-. +..-...|..++.+
T Consensus 105 ~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~ 149 (355)
T TIGR03301 105 FSE-YEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAK 149 (355)
T ss_pred cCC-CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHH
Confidence 764 4679999999987763 334444322 12234456655655
No 105
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=85.57 E-value=0.65 Score=44.69 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc--ccce--eeeccccCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS--IFFE--SLPYKVNTE 82 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g--~~~~--~~~y~~d~~ 82 (240)
|+..++++|+ ...++.++++ + |=--||+.|+.+++.+| +| .+.+ .+++ ...++++..
T Consensus 59 ~nPtv~~lE~----~la~leg~~~----a-v~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~ 129 (432)
T PRK06702 59 GNPTLAAFEQ----KLAELEGGVG----A-VATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVT 129 (432)
T ss_pred CCcHHHHHHH----HHHHHhCCCc----E-EEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEE
Confidence 5566777774 3455678888 3 45789999999999987 21 1111 1111 112222211
Q ss_pred --CcccChHHHHHHHHhhCCCEEEEecccccc--hhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 83 --TGLIDYDKLAESARLFKPRLIIAETIEDLK--LLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 83 --~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r--~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
+..+|.+++++.+. .++|+|++..-..|- .+|+..+.+ .++..++....|.
T Consensus 130 ~vd~~~d~~~l~~~I~-~~Tk~I~~e~pgnP~~~v~Di~~I~~-----iA~~~gi~livD~ 184 (432)
T PRK06702 130 FFNPNLTADEIVALAN-DKTKLVYAESLGNPAMNVLNFKEFSD-----AAKELEVPFIVDN 184 (432)
T ss_pred EECCCCCHHHHHHhCC-cCCeEEEEEcCCCccccccCHHHHHH-----HHHHcCCEEEEEC
Confidence 23478888888765 478999986543332 237777776 4555566666554
No 106
>PRK09064 5-aminolevulinate synthase; Validated
Probab=85.47 E-value=3.3 Score=38.51 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-cc-----------Ccccc-----c--ceeeeccccCCC
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-KI-----------SATSI-----F--FESLPYKVNTET 83 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~~-----------s~~g~-----~--~~~~~y~~d~~~ 83 (240)
..++|..+.| ++++.+. .+-..||+.||.+++.++ .. ++.+. . .++..|+
T Consensus 92 ~~~~l~~~la-~~~g~~~-----~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~----- 160 (407)
T PRK09064 92 YHVELERELA-DLHGKEA-----ALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFR----- 160 (407)
T ss_pred HHHHHHHHHH-HHhCCCc-----EEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEEC-----
Confidence 3444443333 5677653 577899999999988876 10 01110 0 1122222
Q ss_pred cccChHHHHHHHHh---hCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 84 GLIDYDKLAESARL---FKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 84 ~~ID~d~~~~~a~~---~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
..|.+.++++++. .++++|++.....+ ...|+..+.+ .++..++...+|.++..+
T Consensus 161 -~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~-----l~~~~~~~livDEa~~~G 220 (407)
T PRK09064 161 -HNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICD-----LADKYNALTYLDEVHAVG 220 (407)
T ss_pred -CCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHH-----HHHHcCCEEEEECCCccc
Confidence 2477888887764 46788777753332 2345666655 334445666777776544
No 107
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=85.46 E-value=2.7 Score=38.22 Aligned_cols=98 Identities=22% Similarity=0.204 Sum_probs=55.2
Q ss_pred HHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----ccC-----ccc-----cc--ceeeeccccCCCcccChHH
Q psy10666 28 AQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KIS-----ATS-----IF--FESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 28 a~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~s-----~~g-----~~--~~~~~y~~d~~~~~ID~d~ 90 (240)
..+.+.++|+++. .+-+.||+.++++++.++ .|- |.. .. .++..++ ..|.+.
T Consensus 89 l~~~la~~~~~~~-----~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~------~~d~~~ 157 (385)
T PRK05958 89 LEEELAEWFGAER-----ALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYP------HNDVDA 157 (385)
T ss_pred HHHHHHHHhCCCc-----EEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeC------CCCHHH
Confidence 4445666777653 566789999999877776 111 111 00 1222222 248899
Q ss_pred HHHHHHhh--CCCEEEEecccccc--hhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 91 LAESARLF--KPRLIIAETIEDLK--LLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 91 ~~~~a~~~--kPkLIi~G~S~y~r--~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++.+... ++.+++++....+- ..++.++.+ .++..++....|..+
T Consensus 158 l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~-----ia~~~~~~li~De~~ 207 (385)
T PRK05958 158 LEALLAKWRAGRALIVTESVFSMDGDLAPLAELVA-----LARRHGAWLLVDEAH 207 (385)
T ss_pred HHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHH-----HHHHhCCEEEEECcc
Confidence 99888765 35667766543321 345555555 344445555566554
No 108
>PRK05968 hypothetical protein; Provisional
Probab=85.40 E-value=3.6 Score=38.66 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceeeec
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESLPY 77 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~~y 77 (240)
..++++|+ ++.+++|+++ .+-.-||+.|+.+++.++ +| .+.+.+ .++..+
T Consensus 63 p~~~~le~----~lA~l~g~~~-----av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 133 (389)
T PRK05968 63 PTVRAFEE----MLAKLEGAED-----ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYV 133 (389)
T ss_pred hhHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEe
Confidence 33666664 4556799987 355689999999888887 11 111110 122222
Q ss_pred cccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 78 KVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 78 ~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
| ..|.|++++.+ .++|+|++....-+ ...|+..+.+ ..+..++....|.+.
T Consensus 134 --d----~~d~~~l~~~i--~~tklV~ie~pt~~~~~~~dl~~i~~-----la~~~gi~vivD~a~ 186 (389)
T PRK05968 134 --D----GRDEEAVAKAL--PGAKLLYLESPTSWVFELQDVAALAA-----LAKRHGVVTMIDNSW 186 (389)
T ss_pred --C----CCCHHHHHHhc--ccCCEEEEECCCCCCCcHHHHHHHHH-----HHHHcCCEEEEECCC
Confidence 2 12778887765 36798887543322 2245555544 334445555555543
No 109
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=85.22 E-value=2.1 Score=40.19 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCccccc--ce--eeeccccCCC-
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSIF--FE--SLPYKVNTET- 83 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~~--~~--~~~y~~d~~~- 83 (240)
..++++|+ ...++++.++ .+-.-||+.|+.+++.+| + ..+.+.+ +. ...+++....
T Consensus 61 p~~~~Le~----~lA~~~g~~~-----~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~ 131 (388)
T PRK07811 61 PTRTALEE----QLAALEGGAY-----GRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPV 131 (388)
T ss_pred ccHHHHHH----HHHHHhCCCc-----eEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEe
Confidence 34566654 4455688887 244469999999999998 1 1122111 00 0011221110
Q ss_pred cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
..+|.+++++.+.+ ++|+|++...+.| ...|+..+.+ .++..++....|.+.
T Consensus 132 d~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~-----la~~~gi~lIvD~a~ 185 (388)
T PRK07811 132 DLSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAE-----LAHDAGAKVVVDNTF 185 (388)
T ss_pred CCCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 12588888887654 8899988765554 3466666665 344445555555543
No 110
>PRK10534 L-threonine aldolase; Provisional
Probab=85.13 E-value=4.5 Score=36.38 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=58.2
Q ss_pred cccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCcc-----c--cc---c
Q psy10666 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISAT-----S--IF---F 72 (240)
Q Consensus 13 ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~-----g--~~---~ 72 (240)
..|+......++|+.. .+++|.++ + +=-.||+.|++.++.++ + .++. + .. .
T Consensus 28 ~~Y~~~~~~~~L~~~l----a~~~g~~~----~-~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~ 98 (333)
T PRK10534 28 DVYGDDPTVNALQDYA----AELSGKEA----A-LFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSI 98 (333)
T ss_pred cccCCCHHHHHHHHHH----HHHhCCCe----E-EEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCc
Confidence 3343333466666544 34588887 4 44556787888888877 1 1111 1 11 1
Q ss_pred eeeeccccCCCcccChHHHHHHHHhh-----CCCEEEEecccccchhhhhhhhh
Q psy10666 73 ESLPYKVNTETGLIDYDKLAESARLF-----KPRLIIAETIEDLKLLTKVLLEE 121 (240)
Q Consensus 73 ~~~~y~~d~~~~~ID~d~~~~~a~~~-----kPkLIi~G~S~y~r~~d~~~l~E 121 (240)
+.+.++++ +++.+|.|++++.+... ++++|++.....-..++...+.+
T Consensus 99 ~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~~~l~~ 151 (333)
T PRK10534 99 QPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPREYLKQ 151 (333)
T ss_pred eEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecCHHHHHH
Confidence 34556666 35789999998877543 68888877544444456555544
No 111
>PRK07550 hypothetical protein; Provisional
Probab=84.93 E-value=9.7 Score=35.13 Aligned_cols=90 Identities=16% Similarity=0.047 Sum_probs=57.4
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~ 76 (240)
|+...-..++++...++..+.++..... -+|-..+| ++|...++.++ ...+.+ .-.++++
T Consensus 63 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 140 (386)
T PRK07550 63 YGPVEGLPELREAYAAHYSRLYGAAISP--EQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVY 140 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEE
Confidence 4444446778777777877777754211 14556666 56777777777 111221 1267888
Q ss_pred ccccCC-CcccChHHHHHHHHhhCCCEEEEec
Q psy10666 77 YKVNTE-TGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 77 y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
++++++ +..+|.+++++.+.. ++++|++-.
T Consensus 141 v~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~ 171 (386)
T PRK07550 141 LPCDEGPGLLPDPAAAEALITP-RTRAIALVT 171 (386)
T ss_pred EecCCCcCCCCCHHHHHHHhcc-cCcEEEEeC
Confidence 999854 456899999887765 677766543
No 112
>PRK06767 methionine gamma-lyase; Provisional
Probab=84.69 E-value=3.1 Score=38.94 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=62.3
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc--ce--eeeccccCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF--FE--SLPYKVNTE 82 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~--~~--~~~y~~d~~ 82 (240)
|.-.++++|+ .+.+++|++. .+=.-||+.|+.+++.++ +| .+.+.+ +. ...++++..
T Consensus 59 ~~pt~~~Le~----~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~ 129 (386)
T PRK06767 59 GNPTVKLFEE----RMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHS 129 (386)
T ss_pred CCcchHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEE
Confidence 5555666664 4555688875 566789999999999887 11 111110 11 011222110
Q ss_pred -CcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 83 -TGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 83 -~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
....|.+++++.+. .++++|++...+-| ...|+..+.+ .++..++....|.+.
T Consensus 130 ~~~~~d~~~l~~~i~-~~tklV~lesp~NptG~v~dl~~I~~-----la~~~g~~vivD~a~ 185 (386)
T PRK06767 130 FCDMETEADIENKIR-PNTKLIFVETPINPTMKLIDLKQVIR-----VAKRNGLLVIVDNTF 185 (386)
T ss_pred EeCCCCHHHHHHhhC-cCceEEEEeCCCCCCceecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 01247788877664 37899887665554 4467766666 344445555555543
No 113
>PLN00175 aminotransferase family protein; Provisional
Probab=84.62 E-value=4.9 Score=37.91 Aligned_cols=95 Identities=20% Similarity=0.070 Sum_probs=58.3
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESL 75 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~ 75 (240)
.|+..+-..++.+...+..++-++.+.. ..-+|-..+| ++|...++.++ ...+.. .-.+++
T Consensus 86 ~Y~~~~G~~~Lr~aia~~~~~~~g~~~~-~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~ 164 (413)
T PLN00175 86 QYARGFGVPELNSAIAERFKKDTGLVVD-PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIK 164 (413)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhCCCCC-CCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEE
Confidence 3544444666766666666666665431 0014666776 56777777776 111111 115678
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEecccc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIED 110 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y 110 (240)
+++++++++.+|.+++++.+.. ++|+|++-....
T Consensus 165 ~v~~~~~~~~~~~~~l~~~~~~-~~k~i~i~~p~N 198 (413)
T PLN00175 165 TVTLRPPDFAVPEDELKAAFTS-KTRAILINTPHN 198 (413)
T ss_pred EEECCcccCCCCHHHHHHhcCc-CceEEEecCCCC
Confidence 8888876688999999887654 689888754333
No 114
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=84.47 E-value=0.52 Score=27.71 Aligned_cols=14 Identities=50% Similarity=0.862 Sum_probs=10.4
Q ss_pred CCCCCCCCCccHHH
Q psy10666 177 RRPRGRPKNRWKDQ 190 (240)
Q Consensus 177 kR~rGRPrkrW~D~ 190 (240)
+|+||||+|.=.+.
T Consensus 1 kRkRGRPrK~~~~~ 14 (26)
T smart00384 1 KRKRGRPRKAPKDX 14 (26)
T ss_pred CCCCCCCCCCCCcc
Confidence 58999999864443
No 115
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=84.23 E-value=1.9 Score=40.25 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=67.2
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCC-CCCCcccccccC-CChhHHHHHHHhh---------cc-----Cccc--------
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNL-DPEQWGCNVQPY-SGSPANFAVYTGL---------KI-----SATS-------- 69 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a-~~~~w~~nvqp~-SG~~An~av~~al---------~~-----s~~g-------- 69 (240)
+..+.+..+.+|. +.+.+.++|++ +.+ +|-.. |+|.++..++.++ +| .|.+
T Consensus 59 ~~~~~~~~~~~~~-~r~~la~~~~~~~~~----~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~ 133 (406)
T PRK09295 59 HTLSAQATEKMEN-VRKQAALFINARSAE----ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQML 133 (406)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHH
Confidence 3334455566666 45667788998 432 34334 4467766766653 00 0111
Q ss_pred ---ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 70 ---IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 70 ---~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.-.++..+++++ ++.+|.|++++.+. .++++|++.....+ ...|++.+.+ ..+..++....|..+
T Consensus 134 ~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~-~~t~lv~l~~~~n~tG~~~~~~~i~~-----~~~~~~~~vivD~a~ 203 (406)
T PRK09295 134 CARVGAELRVIPLNP-DGTLQLETLPALFD-ERTRLLAITHVSNVLGTENPLAEMIA-----LAHQHGAKVLVDGAQ 203 (406)
T ss_pred HHHcCcEEEEEecCC-CCCCCHHHHHHhcC-CCcEEEEEecchhcccccCCHHHHHH-----HHHHcCCEEEEEccc
Confidence 115667777774 57899999988764 47898887654433 3456666555 334444555555543
No 116
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=84.03 E-value=3.1 Score=39.67 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=75.7
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhhc-------------cCccc----------c-c
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGLK-------------ISATS----------I-F 71 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al~-------------~s~~g----------~-~ 71 (240)
-.+...+..+-|.+.+++++||+.. -+|=-.+| |.|--.|..++. ..|.+ . -
T Consensus 60 ~~~~~t~~~e~aRe~va~~~~a~~~---~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~G 136 (405)
T COG0520 60 LAEEATDLYEAAREAVARFLNADSS---DEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTG 136 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC---CeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcC
Confidence 3445667888899999999999941 35555555 444444444441 01111 1 2
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.++...|++ +++.+|.|++++ ....++||+.+..-+.. -..|++++.+ .++..++...+|+++
T Consensus 137 a~v~~i~~~-~~g~~~~~~~~~-~i~~~Tklvais~vSn~tG~~~pv~~I~~-----la~~~ga~v~VDaaq 201 (405)
T COG0520 137 AKVRVIPLD-DDGLLDLDALEK-LITPKTKLVALSHVSNVTGTVNPVKEIAE-----LAHEHGALVLVDAAQ 201 (405)
T ss_pred cEEEEEecC-CCCCcCHHHHHH-hcCCCceEEEEECccccccccchHHHHHH-----HHHHcCCEEEEECcc
Confidence 578888898 679999999999 55567788777655444 3467888877 567777777777654
No 117
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=83.96 E-value=2.4 Score=40.75 Aligned_cols=106 Identities=20% Similarity=0.127 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc---------ceeeecc
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF---------FESLPYK 78 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~---------~~~~~y~ 78 (240)
+..++++| ++..+++++++ .+=.-||+.|+.+++.+| +| .+.+.+ +.+...-
T Consensus 68 ~p~~~~Le----~~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~ 138 (436)
T PRK07812 68 NPTQDVVE----QRIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSF 138 (436)
T ss_pred CchHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEE
Confidence 44466665 45667889987 355569999999999988 11 111210 1222222
Q ss_pred ccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 79 VNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 79 ~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+| + ..|.+++++.+. .++++|++.....+ ...|+..+.+ .++..++...+|.++
T Consensus 139 vd-d--~~d~e~l~~ai~-~~tklV~ie~~sNp~G~v~Dl~~I~~-----la~~~gi~liVD~t~ 194 (436)
T PRK07812 139 VE-D--PDDLDAWRAAVR-PNTKAFFAETISNPQIDVLDIPGVAE-----VAHEAGVPLIVDNTI 194 (436)
T ss_pred EC-C--CCCHHHHHHhCC-CCCeEEEEECCCCCCCeecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 32 1 137888876543 46788887766544 5678877776 455556666666654
No 118
>PRK08912 hypothetical protein; Provisional
Probab=83.65 E-value=12 Score=34.40 Aligned_cols=91 Identities=11% Similarity=-0.019 Sum_probs=53.9
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccC-CChhHHHHHHHhh----------ccCccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPY-SGSPANFAVYTGL----------KISATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~-SG~~An~av~~al----------~~s~~g-------~~~~~~~ 76 (240)
|+...-..++.+...+..++.++.+.... .+|-.- ++++|..+++.++ ..++.+ .-.+++.
T Consensus 59 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 137 (387)
T PRK08912 59 YPPMMGLPELRQAVAAHYARFQGLDLDPE-TEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRL 137 (387)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 44444345666555556666666532100 134334 4477777777777 111221 1156778
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEec
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
++++++++.+|.+++++.+. .++|+|++-.
T Consensus 138 ~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~~ 167 (387)
T PRK08912 138 VRLEPPHWRLPRAALAAAFS-PRTKAVLLNN 167 (387)
T ss_pred EecCcccCcCCHHHHHHHhC-ccceEEEEeC
Confidence 88876677899999998664 4778877653
No 119
>PRK13578 ornithine decarboxylase; Provisional
Probab=83.61 E-value=1.6 Score=44.72 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=61.1
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-------------ccC--c-----cc---ccce--eeecccc
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-------------KIS--A-----TS---IFFE--SLPYKVN 80 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-------------~~s--~-----~g---~~~~--~~~y~~d 80 (240)
-|+++|.++|||++ -.=...| |.+|.++.+|+ |.| + +| .|+. ...|++-
T Consensus 178 eAq~~AA~~fgAd~-----tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~ 252 (720)
T PRK13578 178 DAQKHAAKVFNADK-----TYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFI 252 (720)
T ss_pred HHHHHHHHHhCCCc-----eEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCc
Confidence 47888999999997 2334555 77899999998 222 1 12 1111 1223331
Q ss_pred CCCcccCh-----HHHHHHHHhh--------CC-CEEEEecccccch-hhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 81 TETGLIDY-----DKLAESARLF--------KP-RLIIAETIEDLKL-LTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 81 ~~~~~ID~-----d~~~~~a~~~--------kP-kLIi~G~S~y~r~-~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+-|+. +.+++.++++ +| +++++-.+.|-.. .|.+.+.+.. .+..+ ...+|.+|
T Consensus 253 ---g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~----~h~~~-~llvDEAh 320 (720)
T PRK13578 253 ---GGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKI----GHLCD-YILFDSAW 320 (720)
T ss_pred ---CCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHh----hccCC-cEEEeCcc
Confidence 33554 4488888877 55 7777777777655 6887776621 23333 44566554
No 120
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=82.76 E-value=3.1 Score=41.06 Aligned_cols=116 Identities=17% Similarity=0.068 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHHHhhcCC-C---CCCcc------cccccCCChhHHHHHHHhh---c---------c------------
Q psy10666 20 FIDEIEIVAQQRSLKAFNL-D---PEQWG------CNVQPYSGSPANFAVYTGL---K---------I------------ 65 (240)
Q Consensus 20 ~id~iE~la~~r~~~lF~a-~---~~~w~------~nvqp~SG~~An~av~~al---~---------~------------ 65 (240)
...+||..+++-+.+|++. + ++.|. .-+=.-+||.||+.++.+- . +
T Consensus 126 a~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~ 205 (522)
T TIGR03799 126 AFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHY 205 (522)
T ss_pred chHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhc
Confidence 3668999999998888742 1 11120 0122357899998876653 0 0
Q ss_pred ---------C---cc---------ccc-ceeeeccccCCCcccChHHHHHHHHh-----hCCCEEE--Eecccccchhhh
Q psy10666 66 ---------S---AT---------SIF-FESLPYKVNTETGLIDYDKLAESARL-----FKPRLII--AETIEDLKLLTK 116 (240)
Q Consensus 66 ---------s---~~---------g~~-~~~~~y~~d~~~~~ID~d~~~~~a~~-----~kPkLIi--~G~S~y~r~~d~ 116 (240)
| |. |.- .++...|+|+ ++.+|.+++++.+.+ .+|-.|+ .|.+..-..-|+
T Consensus 206 ~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~-~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl 284 (522)
T TIGR03799 206 GYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA-NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPL 284 (522)
T ss_pred cCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC-CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCH
Confidence 0 00 110 2567788885 589999999998864 2344344 344445566677
Q ss_pred hhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 117 VLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 117 ~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.++.+ .++..++...+|++.
T Consensus 285 ~eIa~-----i~~~~g~~lHVDaA~ 304 (522)
T TIGR03799 285 DEMAD-----IAQELGCHFHVDAAW 304 (522)
T ss_pred HHHHH-----HHHHcCCeEEEEchh
Confidence 77777 445555666655543
No 121
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=82.48 E-value=0.75 Score=38.86 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=55.7
Q ss_pred cCCcccHHHHHHHHHHH-HHhhcCCCCCCccccc--ccCCChhHHHHHHHhh-------ccC----------ccccccee
Q psy10666 15 YGGNQFIDEIEIVAQQR-SLKAFNLDPEQWGCNV--QPYSGSPANFAVYTGL-------KIS----------ATSIFFES 74 (240)
Q Consensus 15 y~G~~~id~iE~la~~r-~~~lF~a~~~~w~~nv--qp~SG~~An~av~~al-------~~s----------~~g~~~~~ 74 (240)
++|||++.+ .|.+|| +.+-++.+- |+| +|+.|-....++|.-+ ++. +.|...+.
T Consensus 65 ~Q~CEHlNR--ALvvEr~~a~~~~le~----V~VvP~~~AGGs~a~~Ay~~~~dPV~VE~I~A~aGiDIGdT~IGMHlk~ 138 (172)
T TIGR01440 65 FQGCEHINR--ALVMERSVAEPLGMEE----VSVVPDLHAGGSLATYAFQHMKDPVEVEHITAPAGIDIGDTLIGMHVKH 138 (172)
T ss_pred EechhhhhH--HHHHhHHHHHHcCCce----EEEecCCCCCcHHHHHHHHhCCCCEEEEEeecccCcccccceeeeeecc
Confidence 579988876 467777 677789887 888 7888888888999998 111 22445777
Q ss_pred eeccccCCCcccChHHHHHHHHhhCCCEE
Q psy10666 75 LPYKVNTETGLIDYDKLAESARLFKPRLI 103 (240)
Q Consensus 75 ~~y~~d~~~~~ID~d~~~~~a~~~kPkLI 103 (240)
+..|+.+....|- +.--.+...|||||
T Consensus 139 VaVPvR~s~k~iG--~Ahvt~a~tRPKlI 165 (172)
T TIGR01440 139 VQVPVRTSIRQIG--QAHVTAAYSRPKLI 165 (172)
T ss_pred eeeeeeechhhhc--ceeEEeeccCCccc
Confidence 8888864433232 22235667899976
No 122
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=82.42 E-value=2.5 Score=40.08 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=56.7
Q ss_pred HHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Ccccc----------c-ceeeeccccCCCcccC
Q psy10666 29 QQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSI----------F-FESLPYKVNTETGLID 87 (240)
Q Consensus 29 ~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~----------~-~~~~~y~~d~~~~~ID 87 (240)
.+++.+++|++. .+=.-||+.|+.+++.++ +| .+.+. + .++..++. -|
T Consensus 63 e~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~------~d 131 (418)
T TIGR01326 63 EQRIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP------DD 131 (418)
T ss_pred HHHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC------CC
Confidence 345666788876 466789999999999887 11 11110 0 23333332 17
Q ss_pred hHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 88 YDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 88 ~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.|++++.+. .++++|++.....| ...|+..+.+ ..+..++....|.+
T Consensus 132 ~~~l~~~l~-~~t~~V~le~p~NPtg~v~dl~~I~~-----la~~~~i~livD~t 180 (418)
T TIGR01326 132 PEEFEKAID-ENTKAVFAETIGNPAINVPDIEAIAE-----VAHAHGVPLIVDNT 180 (418)
T ss_pred HHHHHHhcC-cCCeEEEEECCCCCCCeecCHHHHHH-----HHHHcCCEEEEECC
Confidence 888887664 47899988754444 3356666666 33444555555543
No 123
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=82.38 E-value=4.1 Score=38.25 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=32.7
Q ss_pred CCCCCc-ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 8 SDEEGK-YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 8 g~pg~r-yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
|+.|.| ||+-....+++| +++.++|+++. .+=..||+.||++++.++
T Consensus 31 ~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~~i~~l 78 (392)
T PLN03227 31 GSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSSTVAAF 78 (392)
T ss_pred CCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHHHHh
Confidence 344433 455444455555 45567789886 678899999999999998
No 124
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=82.21 E-value=3.5 Score=39.01 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=61.5
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESL 75 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~ 75 (240)
|+-.++++|+ +..+++++++ .+-.-||+.|+.+++.++ +| .+.+.+ .++.
T Consensus 68 ~~p~~~~le~----~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~ 138 (403)
T PRK07810 68 GNPTVSMFEE----RLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETV 138 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEE
Confidence 4444666664 4466789886 678899999999999887 11 111111 1222
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.++ ..|.+++++.+. .+.++|++...+.+ ...|+..+.+ .++..++....|.+
T Consensus 139 ~vd------~~d~~~l~~ai~-~~tklV~~esp~Nptg~v~dl~~I~~-----la~~~g~~vivD~a 193 (403)
T PRK07810 139 FVD------GEDLSQWEEALS-VPTQAVFFETPSNPMQSLVDIAAVSE-----LAHAAGAKVVLDNV 193 (403)
T ss_pred EEC------CCCHHHHHHhcC-cCceEEEEECCCCCCCeecCHHHHHH-----HHHHcCCEEEEECC
Confidence 222 137778777654 36788887544433 4567777666 34445555555544
No 125
>PRK08363 alanine aminotransferase; Validated
Probab=81.59 E-value=11 Score=34.97 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=53.8
Q ss_pred cccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-----cc--cee
Q psy10666 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-----IF--FES 74 (240)
Q Consensus 13 ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-----~~--~~~ 74 (240)
.+|+......++++...+..+.-++..... -+|-..+| ++|...++.++ ..++.+ .. ...
T Consensus 64 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~ 141 (398)
T PRK08363 64 NYYGPSEGLPELREAIVKREKRKNGVDITP--DDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVP 141 (398)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhcCCCCCh--hhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEE
Confidence 346544556667666556665555532111 25666666 66888888877 111221 11 345
Q ss_pred eec-cccCCCcccChHHHHHHHHhhCCCEEEEe
Q psy10666 75 LPY-KVNTETGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 75 ~~y-~~d~~~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+.+ ++++++..+|.+++++.+. .++++|++-
T Consensus 142 v~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~ 173 (398)
T PRK08363 142 VEYRTIEEEGWQPDIDDIRKKIT-EKTKAIAVI 173 (398)
T ss_pred EEeccccccCCcCCHHHHHhhCC-cceEEEEEE
Confidence 666 5666666799999988764 367887774
No 126
>PRK07050 cystathionine beta-lyase; Provisional
Probab=81.50 E-value=5.6 Score=37.50 Aligned_cols=104 Identities=14% Similarity=0.004 Sum_probs=57.7
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCccc---------cc--ceee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATS---------IF--FESL 75 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g---------~~--~~~~ 75 (240)
|+..++++|+ ++.+++|+++ -+=-.||+.|+.+++.+| + ..+.+ .. .++.
T Consensus 63 ~~pt~~~Le~----~lA~l~g~~~-----~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~ 133 (394)
T PRK07050 63 ATPTSLALAQ----RLAEIEGGRH-----ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVR 133 (394)
T ss_pred CCHHHHHHHH----HHHHHhCCCe-----EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEE
Confidence 3333445543 4556788886 233478999999999998 1 11221 00 1222
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.+ |+. |.+++++.+ ..++|+|++....-+ ...|+..+.+ .++..++....|.+.
T Consensus 134 ~v--d~~----~~~~l~~~i-~~~tklV~le~p~Np~~~~~di~~I~~-----ia~~~gi~livD~a~ 189 (394)
T PRK07050 134 FY--DPL----IGAGIADLI-QPNTRLIWLEAPGSVTMEVPDVPAITA-----AARARGVVTAIDNTY 189 (394)
T ss_pred EE--CCC----CHHHHHHhc-CCCCeEEEEECCCCCCccHhhHHHHHH-----HHHHcCCEEEEECCc
Confidence 22 211 335666554 357899887654433 4456666655 445555666666543
No 127
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=81.04 E-value=3.9 Score=38.67 Aligned_cols=110 Identities=11% Similarity=0.003 Sum_probs=63.3
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCcccc--cce--eeeccccCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSI--FFE--SLPYKVNTE 82 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~--~~~--~~~y~~d~~ 82 (240)
++..++++|+ ...+++|+++ .+-.-||+.|+..++.++ + ..+.+. +++ ...++++..
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~ 132 (398)
T PRK08249 62 TNPTVQAFEE----KVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVT 132 (398)
T ss_pred CChHHHHHHH----HHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEE
Confidence 3344555553 4456788886 577899999999999887 1 112221 011 011222110
Q ss_pred -CcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 83 -TGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 83 -~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
-...|.|++++.+.. ++++|++...+.| ...|+..+.+ .++..++....|.+.
T Consensus 133 ~vd~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~-----la~~~gi~livD~t~ 188 (398)
T PRK08249 133 LCETGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAA-----AAKKVGALVVVDNTF 188 (398)
T ss_pred EcCCCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHH-----HHHHcCCEEEEECCc
Confidence 013688888877644 7899987555544 4467776666 445555655566543
No 128
>PRK06836 aspartate aminotransferase; Provisional
Probab=80.73 E-value=13 Score=34.59 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=34.7
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEET 122 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~ 122 (240)
.++..++++++++.+|.+++++.+. .++++|++-..+.| ..++.+++.+.
T Consensus 142 ~~v~~v~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~NPtG~~~~~~~~~~l 193 (394)
T PRK06836 142 GKLVVVPTDTDTFQPDLDALEAAIT-PKTKAVIINSPNNPTGVVYSEETLKAL 193 (394)
T ss_pred CEEEEEecCCccCcCCHHHHHhhcC-cCceEEEEeCCCCCCCcCCCHHHHHHH
Confidence 5778889987777899999998874 47898887543333 23444445443
No 129
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=80.43 E-value=4.4 Score=37.85 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=57.8
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc-------cC-----ccccc-------ceeeeccccCCCcccChHH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-------IS-----ATSIF-------FESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~-------~s-----~~g~~-------~~~~~y~~d~~~~~ID~d~ 90 (240)
+++.++|+.+. .+=.-||+.||.+++.+|. |. |...+ -++..++ ..|.+.
T Consensus 97 ~~la~~~g~~~-----~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~------~~d~~~ 165 (406)
T PRK13393 97 AELADLHGKEA-----ALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFR------HNDPAD 165 (406)
T ss_pred HHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeC------CCCHHH
Confidence 56667788775 5667799999999999761 11 11000 1122222 247788
Q ss_pred HHHHHHhh---CCCEEEEecc--cccchhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 91 LAESARLF---KPRLIIAETI--EDLKLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 91 ~~~~a~~~---kPkLIi~G~S--~y~r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
+++.+... ++++|++... ..--..|+..+.+ .++..++...+|.++-.+.
T Consensus 166 l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~-----l~~~~~~~livDea~~~g~ 220 (406)
T PRK13393 166 LERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICD-----VAEKHGAMTYLDEVHAVGL 220 (406)
T ss_pred HHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHH-----HHHHcCCEEEEECCccccc
Confidence 87777654 4567765432 2234456666665 3444556666776665444
No 130
>PRK13690 hypothetical protein; Provisional
Probab=80.28 E-value=0.99 Score=38.53 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=56.4
Q ss_pred cCCcccHHHHHHHHHHH-HHhhcCCCCCCccccc--ccCCChhHHHHHHHhh-------ccC----------ccccccee
Q psy10666 15 YGGNQFIDEIEIVAQQR-SLKAFNLDPEQWGCNV--QPYSGSPANFAVYTGL-------KIS----------ATSIFFES 74 (240)
Q Consensus 15 y~G~~~id~iE~la~~r-~~~lF~a~~~~w~~nv--qp~SG~~An~av~~al-------~~s----------~~g~~~~~ 74 (240)
++|||++.+ .|..|| +.+-++.+- ||| +|+.|-..-.++|.-+ ++. +.|...+.
T Consensus 72 ~QcCEHLNR--ALvvEr~~a~~~~le~----V~VvP~~~AGGs~a~~Ay~~~~dPV~VE~I~A~AGiDIGdT~IGMHlk~ 145 (184)
T PRK13690 72 VQGCEHLNR--ALVVEREVAEKYGLEI----VTVVPVLHAGGSLATAAYQHMKDPVVVEHIKAHAGIDIGDTLIGMHLKH 145 (184)
T ss_pred EechhhhHH--HHHHhHHHHHHcCCeE----EEEecCCCCCcHHHHHHHHhCCCCEEEEEeeeccCcccccceeeeeecc
Confidence 579988876 466666 666789887 888 7888888888999988 121 22455778
Q ss_pred eeccccCCCcccChHHHHHHHHhhCCCEEEE
Q psy10666 75 LPYKVNTETGLIDYDKLAESARLFKPRLIIA 105 (240)
Q Consensus 75 ~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~ 105 (240)
+..|+.+....|- +..-.+...|||||=-
T Consensus 146 VaVPvR~s~~~iG--~Ahvt~artRPKlIGG 174 (184)
T PRK13690 146 VAVPVRPSVKEIG--EAHVTAARTRPKLIGG 174 (184)
T ss_pred eeeeeecchhhhc--ceeEEeeccCCcccCc
Confidence 8888875433332 2233567889997643
No 131
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=79.79 E-value=6 Score=37.10 Aligned_cols=116 Identities=10% Similarity=0.060 Sum_probs=63.2
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----cc-----Cccccc--ce--e
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----KI-----SATSIF--FE--S 74 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----~~-----s~~g~~--~~--~ 74 (240)
||.=.||.+ -.++.+|+ +..+++++++ .+=.-||+.|..+++..+ +| .+.+.+ +. .
T Consensus 41 ~~~y~r~~~--p~~~~Le~----~la~l~g~~~-----al~~~SG~~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~ 109 (380)
T PRK06176 41 GYEYSRSGN--PTRFALEE----LIADLEGGVK-----GFAFASGLAGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVL 109 (380)
T ss_pred CCcccCCCC--hhHHHHHH----HHHHHhCCCC-----EEEECCHHHHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHH
Confidence 444444332 33666664 4566688887 366699999998888655 11 121111 10 0
Q ss_pred eeccccCC-CcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 75 LPYKVNTE-TGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 75 ~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
..+++... -...|.|++++.+. .++++|++...+.| ...|+..+.+ .++..++....|.+
T Consensus 110 ~~~gi~v~~vd~~d~e~l~~ai~-~~t~lV~lesP~Nptg~~~di~~I~~-----la~~~gi~vivD~t 172 (380)
T PRK06176 110 VKNGLSCTIIDTSDLSQIKKAIK-PNTKALYLETPSNPLLKITDLAQCAS-----VAKDHGLLTIVDNT 172 (380)
T ss_pred HhcCeEEEEcCCCCHHHHHHhcC-cCceEEEEECCCCCCceecCHHHHHH-----HHHHcCCEEEEECC
Confidence 01111100 00247778777554 37899888655544 5567776666 44555566656644
No 132
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=79.72 E-value=5.2 Score=38.17 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=57.0
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCcccc--c---------ceeeeccccCCCcccCh
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSI--F---------FESLPYKVNTETGLIDY 88 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~--~---------~~~~~y~~d~~~~~ID~ 88 (240)
+...+++++++ .+-.-||+.|+.+++.++ + ..+.+. . .++.. +|. .|.
T Consensus 70 ~~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~--vd~----~d~ 138 (427)
T PRK05994 70 ERVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRW--ADA----DDP 138 (427)
T ss_pred HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEE--ECC----CCH
Confidence 35567789886 567789999999999987 1 112221 0 12222 221 277
Q ss_pred HHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 89 DKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 89 d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++++.+. .++++|++.....| ...|+..+.+ .++..++....|.++
T Consensus 139 ~~l~~ai~-~~tklV~vesp~NptG~v~dl~~I~~-----la~~~gi~livD~a~ 187 (427)
T PRK05994 139 ASFERAIT-PRTKAIFIESIANPGGTVTDIAAIAE-----VAHRAGLPLIVDNTL 187 (427)
T ss_pred HHHHHhcC-cCCeEEEEECCCCCCCeecCHHHHHH-----HHHHcCCEEEEECCc
Confidence 78777654 37899888543333 4567766665 344455666666544
No 133
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=78.87 E-value=9.9 Score=34.60 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=52.1
Q ss_pred HhhcCCCCCCcccccccCCChhHH-HHHHHhh-----c-----cCccc-------ccceeeeccccCCCcccChHHHHHH
Q psy10666 33 LKAFNLDPEQWGCNVQPYSGSPAN-FAVYTGL-----K-----ISATS-------IFFESLPYKVNTETGLIDYDKLAES 94 (240)
Q Consensus 33 ~~lF~a~~~~w~~nvqp~SG~~An-~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~ 94 (240)
.+.++.+.. -+|-..+|++.. ..++.++ . .++.+ .-.+++++|+++ ++.+|.+++++.
T Consensus 73 a~~~~~~~~---~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~ 148 (356)
T PRK04870 73 RAAMGVPAG---ADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA-DFTLDLPAMLAA 148 (356)
T ss_pred HHHhCcCCC---CcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHH
Confidence 345565531 267788887644 4455555 1 11111 115678888874 478999999998
Q ss_pred HHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 95 ARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 95 a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+...++++|++.....| ..++..++.+
T Consensus 149 ~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 177 (356)
T PRK04870 149 IAEHRPALVFLAYPNNPTGNLFDDADVER 177 (356)
T ss_pred hhcCCCCEEEEcCCCCCCCCCCCHHHHHH
Confidence 88889999988543333 3344444444
No 134
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=78.81 E-value=5.2 Score=37.55 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=59.4
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc--ccce--eeeccccCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS--IFFE--SLPYKVNTE 82 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g--~~~~--~~~y~~d~~ 82 (240)
|+-..+.+|+... ++.++++ +-+ --||+.|+.+++.+| +| .+.+ .++. ...++++.
T Consensus 48 gnPt~~~lE~~lA----~l~g~~~----~~~-~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v- 117 (377)
T TIGR01324 48 GTLTHFALQDAMC----ELEGGAG----CYL-YPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDI- 117 (377)
T ss_pred CCccHHHHHHHHH----HHhCCCc----EEE-ECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEE-
Confidence 5655677775433 5678886 344 459999999999998 21 1111 0010 11122221
Q ss_pred CcccCh---HHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 83 TGLIDY---DKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 83 ~~~ID~---d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
..+|. +++++.+ ..++|+|++...+.+ ...|+..+.+ .++..++...+|.++-
T Consensus 118 -~~~d~~~~e~l~~~i-~~~tklV~lesp~Np~g~~~dl~~I~~-----la~~~g~~livD~t~a 175 (377)
T TIGR01324 118 -TYYDPLIGEDIATLI-QPNTKVLFLEAPSSITFEIQDIPAIAK-----AARNPGIVIMIDNTWA 175 (377)
T ss_pred -EEECCCCHHHHHHhc-CCCceEEEEECCCCCCCcHHHHHHHHH-----HHHHcCCEEEEECCCc
Confidence 11111 5565543 347899888654444 4456666655 4455556666665543
No 135
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=78.70 E-value=9.3 Score=36.83 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=51.3
Q ss_pred HHHHHHHHH-HhhcCCCCCCcccccccCCChhHHHHHHHhh-----------ccCccc-------ccceeeeccccCCCc
Q psy10666 24 IEIVAQQRS-LKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----------KISATS-------IFFESLPYKVNTETG 84 (240)
Q Consensus 24 iE~la~~r~-~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----------~~s~~g-------~~~~~~~y~~d~~~~ 84 (240)
-|.+|.... ..=+.|+. -+|=.-||++..+-....+ ..++.+ .-.++++.|+|+ .
T Consensus 138 R~~ia~~l~~~~g~~~~~----~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~--~ 211 (459)
T COG1167 138 REAIAAYLLARRGISCEP----EQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDE--D 211 (459)
T ss_pred HHHHHHHHHHhcCCccCc----CeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC--C
Confidence 344554444 44455555 2577788876555544443 122322 226788888883 3
Q ss_pred ccChHHHHHHHHhhCCCEEEEecc
Q psy10666 85 LIDYDKLAESARLFKPRLIIAETI 108 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G~S 108 (240)
-+|.|++++.+.+++||++++=++
T Consensus 212 G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 212 GIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred CCCHHHHHHHHhhcCCcEEEECCC
Confidence 499999999999999998887654
No 136
>PRK06434 cystathionine gamma-lyase; Validated
Probab=78.57 E-value=13 Score=35.18 Aligned_cols=38 Identities=21% Similarity=0.084 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
|+..++++|+. ..+++++++ -|-.-||+.|..+++.+|
T Consensus 62 ~~P~~~~lE~~----la~leg~~~-----av~~sSG~aAi~~al~al 99 (384)
T PRK06434 62 GNPTVQAFEEK----YAVLENAEH-----ALSFSSGMGAITSAILSL 99 (384)
T ss_pred CChhHHHHHHH----HHHHhCCCc-----EEEeCCHHHHHHHHHHHH
Confidence 66778888865 667789998 489999999999999997
No 137
>PRK07671 cystathionine beta-lyase; Provisional
Probab=78.27 E-value=7.7 Score=36.31 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=62.0
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc----c-----Cccccc-------
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK----I-----SATSIF------- 71 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~----~-----s~~g~~------- 71 (240)
+|+-.|| |+...+++|+ .+.+++++++ .+-.-||+.|..+++..++ | .+.+.+
T Consensus 41 ~~~y~r~--~~p~~~~Le~----~lA~l~g~~~-----~~~~~sG~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~ 109 (377)
T PRK07671 41 GYEYSRT--GNPTRAALEE----LIAVLEGGHA-----GFAFGSGMAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVL 109 (377)
T ss_pred CCCcCCC--CChHHHHHHH----HHHHHhCCCc-----eEEeCCHHHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHH
Confidence 4444443 3333555554 4566688887 4568899988877765541 1 122111
Q ss_pred ----ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 72 ----FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 72 ----~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.++..+ + ..|.+++++.+. .++|+|++...+.| ...|+..+.+ ..+..++....|.+
T Consensus 110 ~~~G~~v~~v--~----~~d~~~l~~ai~-~~tklV~le~P~NPtg~~~dl~~I~~-----la~~~g~~lvvD~a 172 (377)
T PRK07671 110 NRFGIEHTFV--D----TSNLEEVEEAIR-PNTKAIYVETPTNPLLKITDIKKIST-----IAKEKGLLTIVDNT 172 (377)
T ss_pred hcCCeEEEEE--C----CCCHHHHHHhcC-CCCeEEEEECCCCCCCcccCHHHHHH-----HHHHcCCEEEEECC
Confidence 122222 2 237788877654 36789888665554 3466666665 34555555555544
No 138
>PRK07324 transaminase; Validated
Probab=78.02 E-value=9.9 Score=35.15 Aligned_cols=75 Identities=25% Similarity=0.289 Sum_probs=46.6
Q ss_pred ccccC-CChhHHHHHHHhh-----c-----cCccc-------ccceeeeccccCCC-cccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPY-SGSPANFAVYTGL-----K-----ISATS-------IFFESLPYKVNTET-GLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~-SG~~An~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-.. ++++|+..++.++ + .++.+ .-.+++.+|+++++ ..+|.+++++.+. .++|+|++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~-~~~kli~i~ 160 (373)
T PRK07324 82 NILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR-PNTKLICIN 160 (373)
T ss_pred hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC-CCCcEEEEe
Confidence 44444 4578999898888 1 11211 11578888888654 4589999987654 488998876
Q ss_pred ccccc--chhhhhhhhh
Q psy10666 107 TIEDL--KLLTKVLLEE 121 (240)
Q Consensus 107 ~S~y~--r~~d~~~l~E 121 (240)
....| ..++...+.+
T Consensus 161 ~p~NPtG~~~~~~~l~~ 177 (373)
T PRK07324 161 NANNPTGALMDRAYLEE 177 (373)
T ss_pred CCCCCCCCCCCHHHHHH
Confidence 54444 2345444443
No 139
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=77.94 E-value=5.5 Score=37.65 Aligned_cols=85 Identities=12% Similarity=0.102 Sum_probs=54.3
Q ss_pred HHHHhhcCCCCCCcccccccCCChhH-HHHHHHhhc------c-----Cc---cc--------ccceeeeccccCCCccc
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPA-NFAVYTGLK------I-----SA---TS--------IFFESLPYKVNTETGLI 86 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~A-n~av~~al~------~-----s~---~g--------~~~~~~~y~~d~~~~~I 86 (240)
+.+.++||++. .++...||+.+ ..+++.|+. | .| .. .-.++..+|++++ .+
T Consensus 119 ~~la~l~g~~~----~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~--~~ 192 (447)
T PRK00451 119 TMICELTGMDV----ANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG--VT 192 (447)
T ss_pred HHHHHHhCCCc----ceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC--CC
Confidence 46788999987 57877777654 446666651 1 01 10 1157778888864 89
Q ss_pred ChHHHHHHHHhhCCCEEEEecccccch-hhhhhhhh
Q psy10666 87 DYDKLAESARLFKPRLIIAETIEDLKL-LTKVLLEE 121 (240)
Q Consensus 87 D~d~~~~~a~~~kPkLIi~G~S~y~r~-~d~~~l~E 121 (240)
|.|++++.+. .++++|++...++... .|+..+.+
T Consensus 193 d~~~l~~~i~-~~t~~v~l~~pn~tG~v~~l~~I~~ 227 (447)
T PRK00451 193 DLEALEAAVD-DDTAAVVVQYPNFFGVIEDLEEIAE 227 (447)
T ss_pred CHHHHHHhcC-CCeEEEEEECCCCCCeeCCHHHHHH
Confidence 9999988764 4678877765444333 45555555
No 140
>PRK05942 aspartate aminotransferase; Provisional
Probab=77.92 E-value=20 Score=33.30 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=51.7
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCccc-ccccCCC-hhHHHHHHHhh----------ccCccc-------ccceee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGC-NVQPYSG-SPANFAVYTGL----------KISATS-------IFFESL 75 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~-nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~ 75 (240)
|+...-..++.+...+...+.++.+.+. - ++-..+| ++|...++.++ ..++.+ .-.+++
T Consensus 69 Y~~~~G~~~lr~aia~~~~~~~~~~~~~--~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~ 146 (394)
T PRK05942 69 YPPFEGTASFRQAITDWYHRRYGVELDP--DSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIY 146 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCcCC--CCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEE
Confidence 4433334556655555555555643210 1 2555566 55555666665 111221 115778
Q ss_pred eccccCCC-cccChHHHHHHHHhhCCCEEEEe
Q psy10666 76 PYKVNTET-GLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 76 ~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
++++|+++ ..+|.+++++.+. .++|+|++-
T Consensus 147 ~v~~~~~~~~~~d~~~l~~~~~-~~~k~i~l~ 177 (394)
T PRK05942 147 PIILKPENDWLIDLSSIPEEVA-QQAKILYFN 177 (394)
T ss_pred EeecCCccCCccCHHHHHHhcc-ccceEEEEc
Confidence 88888654 4699999988764 589999876
No 141
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=77.91 E-value=6.8 Score=35.35 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=53.4
Q ss_pred HHHHHhhcCCCCCCcccccccCCCh-hHHHHHHHhh-----cc-----Ccc-------cccceeeeccccCCCcccChHH
Q psy10666 29 QQRSLKAFNLDPEQWGCNVQPYSGS-PANFAVYTGL-----KI-----SAT-------SIFFESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 29 ~~r~~~lF~a~~~~w~~nvqp~SG~-~An~av~~al-----~~-----s~~-------g~~~~~~~y~~d~~~~~ID~d~ 90 (240)
.+.+.++++++. -++-.-+|+ +|...++.++ .| ++. ..-.++..++++++ +.+|.++
T Consensus 60 r~~ia~~~~~~~----~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~ 134 (346)
T TIGR01141 60 KQALADYYGVDP----EQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED-GQLDLED 134 (346)
T ss_pred HHHHHHHhCcCh----HHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC-CCCCHHH
Confidence 344456677765 366666775 5666677776 11 111 01266788888764 7899999
Q ss_pred HHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 91 LAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 91 ~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+++.. ..++++|++...+.| ..++...+.+
T Consensus 135 l~~~~-~~~~~~v~l~~p~NptG~~~~~~~~~~ 166 (346)
T TIGR01141 135 ILVAI-DDKPKLVFLCSPNNPTGNLLSRSDIEA 166 (346)
T ss_pred HHHhc-CCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99864 557898887644444 2345555544
No 142
>PRK15029 arginine decarboxylase; Provisional
Probab=77.83 E-value=4 Score=42.20 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-------------ccC------ccc---ccce--eeeccccC
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-------------KIS------ATS---IFFE--SLPYKVNT 81 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-------------~~s------~~g---~~~~--~~~y~~d~ 81 (240)
-|+++|.++|||++ ..=...| |.+|+++++|+ |.| .+| .|+. ...|++-
T Consensus 209 eAq~~aA~~fgA~~-----t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~- 282 (755)
T PRK15029 209 ESEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGII- 282 (755)
T ss_pred HHHHHHHHHhCCCc-----EEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCc-
Confidence 47788899999997 2333455 67899999998 222 112 1111 1122221
Q ss_pred CCcccC-----hHHHHHHHHhh---------CCCEEEEeccccc-chhhhhhhhhhhHHHHHhhHHHHhhhCCCch
Q psy10666 82 ETGLID-----YDKLAESARLF---------KPRLIIAETIEDL-KLLTKVLLEETSKWRIKHNREIRDLYNEPDV 142 (240)
Q Consensus 82 ~~~~ID-----~d~~~~~a~~~---------kPkLIi~G~S~y~-r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~I 142 (240)
+-|+ .+.+++.++++ ||+.+++-...|- -..|++.+.+ ..+...+...+|.+|-
T Consensus 283 --~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~-----~~h~~~~~llvDEAhG 351 (755)
T PRK15029 283 --GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQD-----LLEKTSDRLHFDEAWY 351 (755)
T ss_pred --cCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHH-----HHHhcCCeEEEECccc
Confidence 2344 88888877654 3446666555555 4478888877 5566677777776653
No 143
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=77.64 E-value=12 Score=35.55 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=50.4
Q ss_pred ceeeeccccCCC--cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhhhh
Q psy10666 72 FESLPYKVNTET--GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGEIK 147 (240)
Q Consensus 72 ~~~~~y~~d~~~--~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~I~ 147 (240)
-+++.-|+-.++ ..||++++++.+.+.++||.|+=.-.-| +.....+| .+-.++..++|+.=|.+.|.
T Consensus 129 R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL--------~~i~elc~kh~v~VISDEIH 200 (388)
T COG1168 129 RKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEEL--------RKIAELCLRHGVRVISDEIH 200 (388)
T ss_pred cEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHH--------HHHHHHHHHcCCEEEeeccc
Confidence 345555654344 4589999999999999887655332222 33344333 34566778888888888887
Q ss_pred ccceeeecc
Q psy10666 148 SGRLRWAGH 156 (240)
Q Consensus 148 ~rrl~WaGH 156 (240)
.- |.+.||
T Consensus 201 aD-lv~~g~ 208 (388)
T COG1168 201 AD-LVLGGH 208 (388)
T ss_pred cc-ccccCC
Confidence 65 888884
No 144
>PLN02955 8-amino-7-oxononanoate synthase
Probab=77.16 E-value=12 Score=36.57 Aligned_cols=118 Identities=10% Similarity=0.102 Sum_probs=68.8
Q ss_pred CCCCCcccCCc-ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-ccC-------------------
Q psy10666 8 SDEEGKYYGGN-QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-KIS------------------- 66 (240)
Q Consensus 8 g~pg~ryy~G~-~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~~s------------------- 66 (240)
|..|.|...|+ .+..++| +.+.++|+.+. -+=--||-.||++++.+| .++
T Consensus 135 g~~gSrl~~G~~~~h~~LE----~~LA~f~g~e~-----all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~ 205 (476)
T PLN02955 135 GPKGSALICGYTTYHRLLE----SSLADLKKKED-----CLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFS 205 (476)
T ss_pred CCCCcCccccChHHHHHHH----HHHHHHHCCCc-----EEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEE
Confidence 55567777776 3333455 45667789887 466689999999999987 111
Q ss_pred ----cc----cc-c------ceeeeccccCCCcccChHHHHHHHHhhC--CCEEEEecccccc---hhhhhhhhhhhHHH
Q psy10666 67 ----AT----SI-F------FESLPYKVNTETGLIDYDKLAESARLFK--PRLIIAETIEDLK---LLTKVLLEETSKWR 126 (240)
Q Consensus 67 ----~~----g~-~------~~~~~y~~d~~~~~ID~d~~~~~a~~~k--PkLIi~G~S~y~r---~~d~~~l~E~~~w~ 126 (240)
|. |. + .++..|+ .-|+|.++++.+.++ +++||+.+ .|.. ..|+.++.+
T Consensus 206 D~~~HaSI~dG~~ls~~~~~a~~~~f~------HND~~~Le~~L~~~~~~~~~Vv~Eg-V~SmdGdiapL~eL~~----- 273 (476)
T PLN02955 206 DALNHASIIDGVRLAERQGNVEVFVYR------HCDMYHLNSLLSSCKMKRKVVVTDS-LFSMDGDFAPMEELSQ----- 273 (476)
T ss_pred eccchHHHHHHHHhccccCCceEEEeC------CCCHHHHHHHHHhCCCCceEEEEeC-CCCCCCCcCCHHHHHH-----
Confidence 11 10 0 1122222 358899988887654 45666663 3443 445555554
Q ss_pred HHhhHHHHhhhCCCchhhhh
Q psy10666 127 IKHNREIRDLYNEPDVVGEI 146 (240)
Q Consensus 127 ~~~N~eIr~~~d~s~Il~~I 146 (240)
.....+....+|.+|-.+.+
T Consensus 274 L~~~~ga~LiVDEAH~~Gv~ 293 (476)
T PLN02955 274 LRKKYGFLLVIDDAHGTFVC 293 (476)
T ss_pred HHHHcCcEEEEcccccCcee
Confidence 22333556666777755444
No 145
>PRK06108 aspartate aminotransferase; Provisional
Probab=76.54 E-value=16 Score=33.26 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=53.8
Q ss_pred cCCcccHHHHHHHHHHHHHhhcC--CCCCCccccccc-CCChhHHHHHHHhh-----c-----cCccc-------cccee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFN--LDPEQWGCNVQP-YSGSPANFAVYTGL-----K-----ISATS-------IFFES 74 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~--a~~~~w~~nvqp-~SG~~An~av~~al-----~-----~s~~g-------~~~~~ 74 (240)
|+...-.+++.+...+...+.++ ++.+ +|-. .+|+.|...++.++ . ..+.. .-.++
T Consensus 57 Y~~~~G~~~lr~~la~~~~~~~~~~~~~~----~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~ 132 (382)
T PRK06108 57 YTHNLGIPELREALARYVSRLHGVATPPE----RIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARV 132 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCcCcc----eEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEE
Confidence 54444456677666677777788 4432 3444 34577777777776 1 11111 11567
Q ss_pred eeccccCC--CcccChHHHHHHHHhhCCCEEEEec
Q psy10666 75 LPYKVNTE--TGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 75 ~~y~~d~~--~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
+.+|++++ +..+|.+++++.+. .++++|++-.
T Consensus 133 ~~v~~~~~~~~~~~d~~~l~~~~~-~~~~~i~l~~ 166 (382)
T PRK06108 133 VCVPLDFGGGGWTLDLDRLLAAIT-PRTRALFINS 166 (382)
T ss_pred EEeeCCCCCCCccCCHHHHHHhcC-ccceEEEEEC
Confidence 78888743 34699999988664 4788877743
No 146
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=76.28 E-value=6.5 Score=37.65 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceeee
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESLP 76 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~~ 76 (240)
+...+.+|+ ...+++++++ .+-.-||+.|..+++.++ +| .+.+.+ .++..
T Consensus 63 ~p~~~~Le~----~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~ 133 (431)
T PRK08248 63 NPTTDVFEK----RIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKF 133 (431)
T ss_pred CchHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEE
Confidence 334555553 4566788887 467899999999999887 11 111100 23333
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+++ .|.+++++.+.. ++++|++-.-..| ...|+.++.+ .++..++....|.+
T Consensus 134 vd~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~-----la~~~gi~vIvD~t 187 (431)
T PRK08248 134 VDP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAA-----IAHEHGIPLIVDNT 187 (431)
T ss_pred ECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHH-----HHHHcCCEEEEeCC
Confidence 332 378888876654 7899888643333 4467766665 34444555555544
No 147
>PRK07683 aminotransferase A; Validated
Probab=76.08 E-value=15 Score=34.05 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=54.1
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCC--CCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------cccee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLD--PEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFES 74 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~--~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~ 74 (240)
|+.+....++++...+...+-++.. .+ -+|-..+| ++|...++.++ ..++.+ .-.++
T Consensus 61 Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~---~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~ 137 (387)
T PRK07683 61 YTHNAGLLELRKAACNFVKDKYDLHYSPE---SEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKP 137 (387)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEE
Confidence 3333345667766666665555542 21 03444454 88888888776 111221 11677
Q ss_pred eeccccCCCcccChHHHHHHHHhhCCCEEEEec
Q psy10666 75 LPYKVNTETGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 75 ~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
+++++++++..+|.+++++.+. .++|+|++-.
T Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~i~i~~ 169 (387)
T PRK07683 138 VFIDTRSTGFRLTAEALENAIT-EKTRCVVLPY 169 (387)
T ss_pred EEeecCcccCCCCHHHHHHhcC-cCceEEEEeC
Confidence 8888887777789999988664 4788887653
No 148
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=75.74 E-value=5.7 Score=40.79 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-------------ccC------ccc---ccce--eeecccc-
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-------------KIS------ATS---IFFE--SLPYKVN- 80 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-------------~~s------~~g---~~~~--~~~y~~d- 80 (240)
-|++.|.++|||++ -.=...| |.+|.+|.+|+ |.| .+| .|+. ...|++-
T Consensus 199 eAe~~AA~~fgAd~-----tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g 273 (714)
T PRK15400 199 EAEEYIARVFNADR-----SYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILG 273 (714)
T ss_pred HHHHHHHHHhCCCc-----EEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCcc
Confidence 47788899999997 3445667 78999999998 222 112 1111 1233331
Q ss_pred -CCCcccChHHHHHHHHhh----CCCEEEEecccccch-hhhhhhhh
Q psy10666 81 -TETGLIDYDKLAESARLF----KPRLIIAETIEDLKL-LTKVLLEE 121 (240)
Q Consensus 81 -~~~~~ID~d~~~~~a~~~----kPkLIi~G~S~y~r~-~d~~~l~E 121 (240)
.....+|.+.+++.++++ +|..+++-.+.|-.. .|.+.+.+
T Consensus 274 ~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~ 320 (714)
T PRK15400 274 GIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKK 320 (714)
T ss_pred CCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHH
Confidence 001123489998888765 454666666666644 67777666
No 149
>PLN02483 serine palmitoyltransferase
Probab=75.55 E-value=8.9 Score=37.29 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=29.4
Q ss_pred CCcc-cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 11 EGKY-YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 11 g~ry-y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
+.|. ||-...++++|+ .+.+.++++. .+=.-||+.||++++.+|
T Consensus 137 ~sr~~~g~~~~~~ele~----~lA~~~g~~~-----ai~~~~G~~an~~~i~al 181 (489)
T PLN02483 137 SSRVDGGTTKLHRELEE----LVARFVGKPA-----AIVFGMGYATNSTIIPAL 181 (489)
T ss_pred ccccccCCcHHHHHHHH----HHHHHhCCCc-----EEEECCHHHHHHHHHHHh
Confidence 4554 443555555554 4455677775 466678999999999988
No 150
>PRK05939 hypothetical protein; Provisional
Probab=75.23 E-value=8.9 Score=36.25 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=63.4
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc--cc--------ceeee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS--IF--------FESLP 76 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g--~~--------~~~~~ 76 (240)
|+..++++|+. ..++.++++ .|---||+.|+.+++.++ +| .+.+ .+ .++..
T Consensus 45 g~p~~~~lE~~----la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~ 115 (397)
T PRK05939 45 GTPTTAALEAK----ITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTM 115 (397)
T ss_pred CCHHHHHHHHH----HHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEE
Confidence 67777777743 335789987 466779999999999887 11 1111 00 22333
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+++ .|.|++++.+. .++++|++.....+ ...|+..+.+ .++..++....|.+
T Consensus 116 v~~------~d~e~l~~~l~-~~tklV~vesp~NptG~v~dl~~I~~-----la~~~gi~livD~t 169 (397)
T PRK05939 116 VDA------TDVQNVAAAIR-PNTRMVFVETIANPGTQVADLAGIGA-----LCRERGLLYVVDNT 169 (397)
T ss_pred ECC------CCHHHHHHhCC-CCCeEEEEECCCCCCCCHHhHHHHHH-----HHHHcCCEEEEECC
Confidence 322 37888887664 57899888654333 3457766665 44555566655554
No 151
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=75.19 E-value=5.7 Score=37.53 Aligned_cols=105 Identities=17% Similarity=0.072 Sum_probs=63.5
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc-----------ceeee
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF-----------FESLP 76 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~-----------~~~~~ 76 (240)
+-..+.+|+ ...++++++. -+---||+.|+.+++.++ +| .+.+.+ +++..
T Consensus 52 npt~~~Le~----~lA~leg~e~-----ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~ 122 (388)
T PRK08861 52 NPNRGLLEQ----TLSELESGKG-----AVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQF 122 (388)
T ss_pred CchHHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEE
Confidence 334666664 3455677775 455677899999999987 11 122211 11211
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchh
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVV 143 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il 143 (240)
+| ..|.|++++.+.. ++++|++...+.| ..+|+..+.+ .++..++...+|.+...
T Consensus 123 --vd----~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~-----la~~~gi~vIvDea~~~ 179 (388)
T PRK08861 123 --VD----QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQ-----KAKAVGALVAVDNTFLT 179 (388)
T ss_pred --EC----CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHH-----HHHHcCCEEEEECCccc
Confidence 22 2578888776654 8999998766665 5678777766 34445666666666543
No 152
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=75.14 E-value=12 Score=31.62 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=49.3
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhccCcccccceeeeccccCCCcccChH-HHHH
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKISATSIFFESLPYKVNTETGLIDYD-KLAE 93 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~s~~g~~~~~~~y~~d~~~~~ID~d-~~~~ 93 (240)
+.|-++-|+.=++|.+||++| +..| .-|-.-||-.|..+.=+.- -+ -....-+.++++.++ +...+| ++++
T Consensus 6 ~pG~eNT~~tle~a~erA~el-gik~----~vVAS~tG~tA~k~lemve-g~-lkvVvVthh~Gf~e~-g~~e~~~E~~~ 77 (186)
T COG1751 6 KPGKENTDETLEIAVERAKEL-GIKH----IVVASSTGYTALKALEMVE-GD-LKVVVVTHHAGFEEK-GTQEMDEEVRK 77 (186)
T ss_pred CCcccchHHHHHHHHHHHHhc-Ccce----EEEEecccHHHHHHHHhcc-cC-ceEEEEEeecccccC-CceecCHHHHH
Confidence 457789999999999999999 6676 5677778876655433221 11 001122356777643 455553 4455
Q ss_pred HHHhhCCCEEEEec
Q psy10666 94 SARLFKPRLIIAET 107 (240)
Q Consensus 94 ~a~~~kPkLIi~G~ 107 (240)
.+++---+ |+.+.
T Consensus 78 ~L~erGa~-v~~~s 90 (186)
T COG1751 78 ELKERGAK-VLTQS 90 (186)
T ss_pred HHHHcCce-eeeeh
Confidence 44443333 44444
No 153
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=74.89 E-value=9.8 Score=35.51 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=54.3
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-ccC-----------ccccc-------ceeeeccccCCCcccChHH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-KIS-----------ATSIF-------FESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-~~s-----------~~g~~-------~~~~~y~~d~~~~~ID~d~ 90 (240)
+.+.++|+.+. .+=.-||+.||.+++.++ +.. |.+.+ .++..++. -|.+.
T Consensus 98 ~~la~~~g~~~-----~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~------~d~~~ 166 (410)
T PRK13392 98 RELADLHGKES-----ALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH------NDLAD 166 (410)
T ss_pred HHHHHHhCCCC-----EEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC------CCHHH
Confidence 45566788765 577789999999988876 110 11100 11222221 24555
Q ss_pred HHHHHHh---hCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhhh
Q psy10666 91 LAESARL---FKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVGE 145 (240)
Q Consensus 91 ~~~~a~~---~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~~ 145 (240)
+++.++. .++++|++.....+ ...|+..+.+ .++..++....|.++..+.
T Consensus 167 l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~-----l~~~~~~~livDea~~~g~ 221 (410)
T PRK13392 167 LEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICD-----LADRYNALTYVDEVHAVGL 221 (410)
T ss_pred HHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHH-----HHHHcCCEEEEECCccccC
Confidence 5555543 46777766543322 2356665555 3344456666676665443
No 154
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=73.76 E-value=24 Score=32.98 Aligned_cols=63 Identities=22% Similarity=0.153 Sum_probs=40.5
Q ss_pred ccccCCC-hhHHHHHHHhh-----c-----cCccc-------ccceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSG-SPANFAVYTGL-----K-----ISATS-------IFFESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG-~~An~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-..+| ++|...++.++ + .++.. .-.++..++++++ +..+|.+++++.+.. ++++|++-
T Consensus 106 ~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i~~~ 184 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD-RTKALIMT 184 (412)
T ss_pred hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc-CceEEEEe
Confidence 5556666 66777777777 1 11221 1156777888754 457999999876654 78888774
Q ss_pred ccc
Q psy10666 107 TIE 109 (240)
Q Consensus 107 ~S~ 109 (240)
...
T Consensus 185 ~p~ 187 (412)
T PTZ00433 185 NPS 187 (412)
T ss_pred CCC
Confidence 433
No 155
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=73.44 E-value=6.5 Score=38.13 Aligned_cols=99 Identities=6% Similarity=-0.008 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh------------ccCccccc----------ceeeeccccCCCc
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL------------KISATSIF----------FESLPYKVNTETG 84 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al------------~~s~~g~~----------~~~~~y~~d~~~~ 84 (240)
.+.+.++++||+++ +-+ --||+.|+..++.++ ++++.|.+ .++..++.+ .
T Consensus 126 ~le~~lA~l~gae~----alv-v~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~---~ 197 (454)
T TIGR00474 126 HVEGLLCELTGAED----ALV-VNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT---N 197 (454)
T ss_pred HHHHHHHHHhCCCc----EEE-ECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC---C
Confidence 34566778999998 444 458999999999887 11121210 233444332 3
Q ss_pred ccChHHHHHHHHhhCCCEEEEec-cccc-----chhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 85 LIDYDKLAESARLFKPRLIIAET-IEDL-----KLLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G~-S~y~-----r~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
..|.+++++.+ ..+.++|++-. |+|. ...|+.++.+ ..+..++...+|.
T Consensus 198 ~~~l~dle~aI-~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~-----la~~~g~~vivD~ 252 (454)
T TIGR00474 198 RTHLKDYEDAI-TENTALLLKVHTSNYRIVGFTEEVSIAELVA-----LGREHGLPVMEDL 252 (454)
T ss_pred CCCHHHHHHhc-CcCCEEEEEEccCcccccCCCCCCCHHHHHH-----HHHHcCCeEEEEC
Confidence 46778887755 34567766444 4443 3578877776 4455555555553
No 156
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=73.26 E-value=6.6 Score=36.67 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=37.3
Q ss_pred CcccChHHHHHHHHh--hCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 83 TGLIDYDKLAESARL--FKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 83 ~~~ID~d~~~~~a~~--~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
++.+|.+.+++.++. .++++|++-...+. ...|+..+.+ .++..++...+|..+-.+
T Consensus 153 ~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~-----~~~~~g~~~~vD~aq~~G 213 (406)
T TIGR01814 153 EETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITR-----AAHAKGALVGFDLAHAVG 213 (406)
T ss_pred CCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHH-----HHHHcCCEEEEEcccccC
Confidence 468899999887764 45677766554443 5577877776 455566666666554333
No 157
>PLN02822 serine palmitoyltransferase
Probab=72.40 E-value=11 Score=36.48 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
|+.|.|.+.|+ .+..++ +.+++.++|+.+. .|-.-+|..|+.++..|+
T Consensus 142 g~~g~r~~yg~--~~~~~~-Lee~La~~~~~~~-----~i~~s~G~~a~~sai~a~ 189 (481)
T PLN02822 142 GSCGPRGFYGT--IDVHLD-CETKIAKFLGTPD-----SILYSYGLSTIFSVIPAF 189 (481)
T ss_pred CCcccCccccC--HHHHHH-HHHHHHHHhCCCC-----EEEECCHHHHHHHHHHHh
Confidence 45555543333 222223 3455556677664 455557877999999988
No 158
>PRK06234 methionine gamma-lyase; Provisional
Probab=72.10 E-value=10 Score=35.69 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=58.9
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc---------cc--ceee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS---------IF--FESL 75 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g---------~~--~~~~ 75 (240)
+...+.++|+. ..++++.+. .+=.-||+.|+.+++.++ +| .+.+ .. .++.
T Consensus 62 ~~p~~~~Le~~----iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 132 (400)
T PRK06234 62 GNPTSTEVENK----LALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVT 132 (400)
T ss_pred CCccHHHHHHH----HHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEE
Confidence 45557777754 344567765 467789999999988887 11 1111 00 1222
Q ss_pred eccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhh--HHHHhhhCCCc
Q psy10666 76 PYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHN--REIRDLYNEPD 141 (240)
Q Consensus 76 ~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N--~eIr~~~d~s~ 141 (240)
.++. .|.+++++.+. .++|+|++...+.| ...|+..+.+ .++. .++....|.+.
T Consensus 133 ~vd~------~d~e~l~~~i~-~~tklI~iesP~NPtG~v~dl~~I~~-----la~~~~~~i~livDea~ 190 (400)
T PRK06234 133 FVDT------SNLEEVRNALK-ANTKVVYLETPANPTLKVTDIKAISN-----IAHENNKECLVFVDNTF 190 (400)
T ss_pred EECC------CCHHHHHHHhc-cCCeEEEEECCCCCCCCcCCHHHHHH-----HHHhcCCCCEEEEECCC
Confidence 2221 26788877664 36888887654433 4466666665 2332 24555555543
No 159
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=71.83 E-value=10 Score=37.02 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 11 EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 11 g~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
|+--|+|...+.++|+.+. ++||-++ -+--|||..||...+.++
T Consensus 66 GDD~Y~gdpSv~~Lee~va----el~G~E~-----alpthqGRgaE~Il~~~~ 109 (467)
T TIGR02617 66 GDEAYSGSRSYYALAESVK----NIFGYQY-----TIPTHQGRGAEQIYIPVL 109 (467)
T ss_pred CCcccccCchHHHHHHHHH----HHhCCce-----EEECCCCchHHHHHHHhh
Confidence 7778999999999987654 5799887 477899999999999765
No 160
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=70.90 E-value=42 Score=30.91 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcC--CCCCCcccccccCCChh-HHHHHHHhh----------ccCccc-------ccceeeeccccC
Q psy10666 22 DEIEIVAQQRSLKAFN--LDPEQWGCNVQPYSGSP-ANFAVYTGL----------KISATS-------IFFESLPYKVNT 81 (240)
Q Consensus 22 d~iE~la~~r~~~lF~--a~~~~w~~nvqp~SG~~-An~av~~al----------~~s~~g-------~~~~~~~y~~d~ 81 (240)
.++-+...+...+-+| ++.+ -+|-..+|++ |...++.+| ..++.+ .-.+++++|+++
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~---~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 147 (388)
T PRK07366 71 LDFREAAAQWYEQRFGLAVDPE---TEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRA 147 (388)
T ss_pred HHHHHHHHHHHHHhhCCcCCCc---CeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCC
Confidence 3444444445444445 3331 0477777754 556666665 112222 116788889986
Q ss_pred CC-cccChHHHHHHHHhhCCCEEEEeccccc
Q psy10666 82 ET-GLIDYDKLAESARLFKPRLIIAETIEDL 111 (240)
Q Consensus 82 ~~-~~ID~d~~~~~a~~~kPkLIi~G~S~y~ 111 (240)
++ ..+|.+++.+.+. .+||+|++-....|
T Consensus 148 ~~~~~~d~~~l~~~~~-~~~k~i~l~~p~NP 177 (388)
T PRK07366 148 ENDFLPVFADIPTEVL-AQARLMVLSYPHNP 177 (388)
T ss_pred ccCCCCCHHHHHHhhc-ccceEEEEeCCCCC
Confidence 54 4689998877653 47898887654444
No 161
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=70.63 E-value=24 Score=31.77 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=60.3
Q ss_pred cCCcccHHHHHHHHHHHHH--hhcCCCCCCcccccccCCChhHHHHHHHhhc-c-----------Cccc-------ccce
Q psy10666 15 YGGNQFIDEIEIVAQQRSL--KAFNLDPEQWGCNVQPYSGSPANFAVYTGLK-I-----------SATS-------IFFE 73 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~--~lF~a~~~~w~~nvqp~SG~~An~av~~al~-~-----------s~~g-------~~~~ 73 (240)
|+-..-..++++...+... .-+..+.+ .+|-..+|+.+++..+..+- . .+.+ .-.+
T Consensus 40 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~---~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~ 116 (363)
T PF00155_consen 40 YPPPQGYPELREAIADFLGRRYGVPVDPE---ANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAE 116 (363)
T ss_dssp STCTTHHHHHHHHHHHHHHHHHTHHTTGG---EGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSE
T ss_pred CCCchhhHHHHHHHHHHhhhccCcccccc---eEEEEecccccchhhhhhcccccccccceecCCccccccccccccCce
Confidence 3333334555544444433 22223431 37999999888887766651 1 1111 1167
Q ss_pred eeecccc-CCCcccChHHHHHHHHhh-----CCCEEEEeccccc--chhhhhhhhh
Q psy10666 74 SLPYKVN-TETGLIDYDKLAESARLF-----KPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 74 ~~~y~~d-~~~~~ID~d~~~~~a~~~-----kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+++++++ ++++.+|.+++++..++. +|++|++..-..| ..++...+.+
T Consensus 117 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~ 172 (363)
T PF00155_consen 117 VIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRE 172 (363)
T ss_dssp EEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHH
T ss_pred eeeccccccccccccccccccccccccccccccceeeecccccccccccccccccc
Confidence 8888876 345789999999999986 6777776554443 3345544444
No 162
>PRK08068 transaminase; Reviewed
Probab=70.57 E-value=41 Score=31.06 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCCcccccccCCCh-hHHHHHHHhh----------ccCccc-------ccceeeecccc
Q psy10666 21 IDEIEIVAQQRSLKAFNL--DPEQWGCNVQPYSGS-PANFAVYTGL----------KISATS-------IFFESLPYKVN 80 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a--~~~~w~~nvqp~SG~-~An~av~~al----------~~s~~g-------~~~~~~~y~~d 80 (240)
.+++.+...+..++-++. +.+ -+|-..+|+ +|...++.++ ..++.. .-.+++.+|++
T Consensus 72 ~~~lr~aia~~~~~~~g~~~~~~---~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 148 (389)
T PRK08068 72 YPFLKEAAADFYKREYGVTLDPE---TEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLI 148 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCC---ccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecc
Confidence 556665555555555563 331 134455664 4555556666 112211 12577888998
Q ss_pred CC-CcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 81 TE-TGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 81 ~~-~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
++ +..+|.+++++.+. .++++|++-....| ..++..++.+
T Consensus 149 ~~~~~~~d~~~l~~~~~-~~~~~v~l~~P~NPTG~~~s~~~~~~ 191 (389)
T PRK08068 149 AENNFLPDYTKIPEEVA-EKAKLMYLNYPNNPTGAVATKAFFEE 191 (389)
T ss_pred cccCCCCCHHHHHHhcc-ccceEEEEECCCCCCCCcCCHHHHHH
Confidence 65 45789999988764 47898887633333 3345544444
No 163
>PRK05957 aspartate aminotransferase; Provisional
Probab=70.26 E-value=14 Score=34.16 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCCh-hHHHHHHHhh-----cc-----Cccc-------ccceeeeccccCC
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGS-PANFAVYTGL-----KI-----SATS-------IFFESLPYKVNTE 82 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~-~An~av~~al-----~~-----s~~g-------~~~~~~~y~~d~~ 82 (240)
..++-+...+.+.+.++.+...- -++-.-+|+ +|...++.++ .| .+.+ .-.+++.++++ +
T Consensus 67 ~~~lr~~~~~~l~~~~g~~~~~~-~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~ 144 (389)
T PRK05957 67 IPPLLEAITQKLQQDNGIELNNE-QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD-D 144 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCC-CeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC-C
Confidence 34444444445556677631000 245556664 5666666665 11 1111 11567777776 3
Q ss_pred CcccChHHHHHHHHhhCCCEEEEeccccc
Q psy10666 83 TGLIDYDKLAESARLFKPRLIIAETIEDL 111 (240)
Q Consensus 83 ~~~ID~d~~~~~a~~~kPkLIi~G~S~y~ 111 (240)
++.+|.|++++.+. .++|+|++-....|
T Consensus 145 ~~~~d~~~l~~~i~-~~~klv~~~~p~NP 172 (389)
T PRK05957 145 NYQLQPEAIEQAIT-PKTRAIVTISPNNP 172 (389)
T ss_pred CCCcCHHHHHHhcC-cCceEEEEeCCCCC
Confidence 46799999998764 47898887654333
No 164
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=70.26 E-value=50 Score=29.96 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=53.2
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCC--CCCCcccccccCCCh-hHHHHHHHhh-c------------cCccc-------cc
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNL--DPEQWGCNVQPYSGS-PANFAVYTGL-K------------ISATS-------IF 71 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a--~~~~w~~nvqp~SG~-~An~av~~al-~------------~s~~g-------~~ 71 (240)
|+.....+++.+...+...+-+|. +.+ -+|=.-+|+ +|...++.++ . .++.+ .-
T Consensus 32 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~---~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g 108 (350)
T TIGR03537 32 YPSALGTKALREAISGWFERRFGVKLDPD---AQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAG 108 (350)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhcC
Confidence 454444566666666665555553 321 145566774 4555555555 1 11211 11
Q ss_pred ceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEeccc
Q psy10666 72 FESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAETIE 109 (240)
Q Consensus 72 ~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~S~ 109 (240)
.++++++++++ +..+|.|++++.+.+ ++|+|++-...
T Consensus 109 ~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~ 146 (350)
T TIGR03537 109 GEPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPH 146 (350)
T ss_pred CEEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCC
Confidence 67888888754 446999999887654 89988765433
No 165
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=70.25 E-value=16 Score=33.36 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred hhcCCCCCCcccccccCCChhH-HHHHHHhh----------ccCccc-------ccceeeeccccCCCcccChHHHHHHH
Q psy10666 34 KAFNLDPEQWGCNVQPYSGSPA-NFAVYTGL----------KISATS-------IFFESLPYKVNTETGLIDYDKLAESA 95 (240)
Q Consensus 34 ~lF~a~~~~w~~nvqp~SG~~A-n~av~~al----------~~s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~a 95 (240)
+.++++. -+|-.-+|++. ...++.++ ..++.+ .-.+++.+++++ ++.+|.|++++.+
T Consensus 70 ~~~~~~~----~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~ 144 (351)
T PRK14807 70 RYCSVVP----TNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKE-DYTYDVGSFIKVI 144 (351)
T ss_pred HHhCCCc----ccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCC-CCCCCHHHHHHHh
Confidence 3467765 26778888765 45555665 111111 115677788874 4779999999988
Q ss_pred HhhCCCEEEEec
Q psy10666 96 RLFKPRLIIAET 107 (240)
Q Consensus 96 ~~~kPkLIi~G~ 107 (240)
...++|+|++-.
T Consensus 145 ~~~~~k~v~l~~ 156 (351)
T PRK14807 145 EKYQPKLVFLCN 156 (351)
T ss_pred hccCCCEEEEeC
Confidence 878999988743
No 166
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=70.14 E-value=12 Score=34.98 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=54.6
Q ss_pred HHHhhcCCCCCCcccccccCCChhHHHHHHHhh----cc-----Ccccc-----------cceeeeccccCCCcccChHH
Q psy10666 31 RSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----KI-----SATSI-----------FFESLPYKVNTETGLIDYDK 90 (240)
Q Consensus 31 r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----~~-----s~~g~-----------~~~~~~y~~d~~~~~ID~d~ 90 (240)
...++|++++ .+=.-||+.|..+++..+ +| .+.+. -.++..+++ .|.++
T Consensus 55 ~la~l~g~~~-----~l~~~sG~~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~------~d~~~ 123 (378)
T TIGR01329 55 LLAKLDKADR-----AFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT------TDLDK 123 (378)
T ss_pred HHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC------CCHHH
Confidence 3446789876 455678888877766544 11 12110 022222222 37788
Q ss_pred HHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 91 LAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 91 ~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+++.+. .++|+|++...+.+ ...|+..+.+ .++..++....|.+.
T Consensus 124 le~~i~-~~tklv~le~psnptg~v~dl~~I~~-----la~~~g~~vivD~a~ 170 (378)
T TIGR01329 124 VKAALG-PKTKLVLLESPTNPLQKIVDIRKISE-----MAHAQNALVVVDNTM 170 (378)
T ss_pred HHHhcC-cCceEEEEECCCCCCCeeecHHHHHH-----HHHHcCCEEEEECCC
Confidence 877664 57888887765554 4567777766 445555666666554
No 167
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=69.44 E-value=28 Score=32.19 Aligned_cols=101 Identities=12% Similarity=0.025 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc----c-----Ccccc---------c--ceeeecc
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK----I-----SATSI---------F--FESLPYK 78 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~----~-----s~~g~---------~--~~~~~y~ 78 (240)
-.++++|+ ...+++|+++ .+-.-||+.|..+++..+. | .+.+. . .++..
T Consensus 52 pt~~~le~----~la~l~g~~~-----~~~~~sG~~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~-- 120 (366)
T PRK08247 52 PTRGVLEQ----AIADLEGGDQ-----GFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVY-- 120 (366)
T ss_pred chHHHHHH----HHHHHhCCCc-----EEEEcCHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEE--
Confidence 34666664 4566789987 4667899999888775441 1 12111 0 12222
Q ss_pred ccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 79 VNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 79 ~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+| ..|.+++++.+.. ++++|++...+.| ...|+..+.+ ..+..++....|.+
T Consensus 121 vd----~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~-----la~~~g~~lIvD~t 174 (366)
T PRK08247 121 VN----TASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAK-----IAKKHGLLLIVDNT 174 (366)
T ss_pred EC----CCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHH-----HHHHcCCEEEEECC
Confidence 22 1478888776654 7899988665555 2234444444 23333444445543
No 168
>KOG1412|consensus
Probab=69.02 E-value=13 Score=34.85 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcCCCC----CCcccccccCCChhHHHHHHHhh------c-c--C------cc-----cccceeeeccc
Q psy10666 24 IEIVAQQRSLKAFNLDP----EQWGCNVQPYSGSPANFAVYTGL------K-I--S------AT-----SIFFESLPYKV 79 (240)
Q Consensus 24 iE~la~~r~~~lF~a~~----~~w~~nvqp~SG~~An~av~~al------~-~--s------~~-----g~~~~~~~y~~ 79 (240)
++..+..-+.-+||.+. ++--..||.+|||-|+.+.--=| + | | |. .-|-.+..|++
T Consensus 76 l~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~y 155 (410)
T KOG1412|consen 76 LPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPY 155 (410)
T ss_pred chhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeee
Confidence 45666666666788874 22336899999999988654333 1 1 1 11 12345677876
Q ss_pred -cCCCcccChHHHHHHHHhhCCCEEEEecccccch
Q psy10666 80 -NTETGLIDYDKLAESARLFKPRLIIAETIEDLKL 113 (240)
Q Consensus 80 -d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~ 113 (240)
|.++..+|++.+..-++.-.++-|+.=..|---|
T Consensus 156 Wd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNP 190 (410)
T KOG1412|consen 156 WDAENKCVDLEGFLSDLESAPEGSIIILHACAHNP 190 (410)
T ss_pred ecCCCceecHHHHHHHHhhCCCCcEEeeeccccCC
Confidence 5667789999999887777776666555553333
No 169
>PRK08064 cystathionine beta-lyase; Provisional
Probab=68.71 E-value=13 Score=34.94 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=57.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc----c-----Cccccc-----------ceeeecc
Q psy10666 19 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK----I-----SATSIF-----------FESLPYK 78 (240)
Q Consensus 19 ~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~----~-----s~~g~~-----------~~~~~y~ 78 (240)
..++++| ++..+++|+++ .+-.-||+.|..+++..++ | .+.+.+ .++..++
T Consensus 54 p~~~~le----~~lA~l~g~~~-----~v~~~sG~~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~ 124 (390)
T PRK08064 54 PTREALE----DIIAELEGGTK-----GFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVD 124 (390)
T ss_pred hhHHHHH----HHHHHHhCCCC-----eEEECCHHHHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEEC
Confidence 3345554 46667789886 4556999999888886551 1 122111 1122222
Q ss_pred ccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 79 VNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 79 ~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+ .|.+++++.+. .++++|++...+.| ...|+..+.+ .++..++...+|.+
T Consensus 125 ~------~d~~~l~~~l~-~~tklV~l~~p~NptG~~~dl~~I~~-----la~~~g~~vvvD~a 176 (390)
T PRK08064 125 M------TNLEEVAQNIK-PNTKLFYVETPSNPLLKVTDIRGVVK-----LAKAIGCLTFVDNT 176 (390)
T ss_pred C------CCHHHHHHhcC-CCceEEEEECCCCCCcEeccHHHHHH-----HHHHcCCEEEEECC
Confidence 2 25666666443 36789887765533 5567777766 34455566666654
No 170
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=68.30 E-value=22 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=31.5
Q ss_pred ceeeeccccCCCcccChHHHHHHHHh---hCCCEEEEeccccc
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARL---FKPRLIIAETIEDL 111 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~---~kPkLIi~G~S~y~ 111 (240)
.+++.+++++++..+|.+++++.+.+ .++|+|++-....|
T Consensus 138 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NP 180 (374)
T PRK02610 138 IPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSP 180 (374)
T ss_pred CEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 56788888866678999999988876 78999987654444
No 171
>PRK04311 selenocysteine synthase; Provisional
Probab=67.99 E-value=13 Score=36.20 Aligned_cols=99 Identities=8% Similarity=0.054 Sum_probs=58.7
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc------------cCccccc----------ceeeeccccCCCc
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK------------ISATSIF----------FESLPYKVNTETG 84 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~------------~s~~g~~----------~~~~~y~~d~~~~ 84 (240)
.+.+.+.++||+++ + +=--||+.|+..++.+|. ++..|.+ .++..++.+ .
T Consensus 131 ~~e~~lA~l~Gae~----a-~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~---~ 202 (464)
T PRK04311 131 ALAALLCALTGAED----A-LVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT---N 202 (464)
T ss_pred HHHHHHHHHhCCCe----E-EEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC---C
Confidence 45566778999997 3 345679999998888881 1111110 233334332 3
Q ss_pred ccChHHHHHHHHhhCCCEEEEe-cccc-----cchhhhhhhhhhhHHHHHhhHHHHhhhCC
Q psy10666 85 LIDYDKLAESARLFKPRLIIAE-TIED-----LKLLTKVLLEETSKWRIKHNREIRDLYNE 139 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G-~S~y-----~r~~d~~~l~E~~~w~~~~N~eIr~~~d~ 139 (240)
..|.+.+++.+. .++++|++- .|+| ....|+.++.+ ..+..++....|.
T Consensus 203 ~t~~~dle~aI~-~~TklV~~vh~sN~~i~G~~~~~dl~eI~~-----lak~~gi~vivD~ 257 (464)
T PRK04311 203 RTHLRDYEQAIN-ENTALLLKVHTSNYRIEGFTKEVSLAELAA-----LGKEHGLPVVYDL 257 (464)
T ss_pred CCCHHHHHHhcC-ccCeEEEEEcCCCccccccCCcCCHHHHHH-----HHHHcCCeEEEEC
Confidence 457777777554 467776655 4443 24678877766 4455555555554
No 172
>PTZ00377 alanine aminotransferase; Provisional
Probab=67.57 E-value=34 Score=32.91 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhhc------c-----Cccc-------ccceee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGLK------I-----SATS-------IFFESL 75 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al~------~-----s~~g-------~~~~~~ 75 (240)
|+...-..++-+...+...+-+|.+... -+|-..+| ++|...++.+|- | .+.+ .-.+++
T Consensus 111 Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v 188 (481)
T PTZ00377 111 YTDSAGYPFVRKAVAAFIERRDGVPKDP--SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQV 188 (481)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEE
Confidence 4433334444433334444444433210 26667777 555566666661 1 1111 115678
Q ss_pred eccccCCC-cccChHHHHHHHHhh-----CCCEEEEe
Q psy10666 76 PYKVNTET-GLIDYDKLAESARLF-----KPRLIIAE 106 (240)
Q Consensus 76 ~y~~d~~~-~~ID~d~~~~~a~~~-----kPkLIi~G 106 (240)
.+++++++ ..+|.|++++.+... +||+|++-
T Consensus 189 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~ 225 (481)
T PTZ00377 189 PYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVI 225 (481)
T ss_pred EEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEE
Confidence 88888654 479999999887653 88876554
No 173
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=67.44 E-value=15 Score=34.08 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=53.2
Q ss_pred HHHHhhcCCCCCCcccccccCCChh-HHHHHHHhh-----cc-----Cccc-------ccceeeeccccCCCcccChHHH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSP-ANFAVYTGL-----KI-----SATS-------IFFESLPYKVNTETGLIDYDKL 91 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~-An~av~~al-----~~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~ 91 (240)
+.+.+.++++. -+|-+.+|+. +...++.++ +| .+.. .-.+++.++.++ +..+|.+++
T Consensus 93 ~~ia~~~~~~~----~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l 167 (380)
T PLN03026 93 AALAEDSGLES----ENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTP-DFSLDVPRI 167 (380)
T ss_pred HHHHHHhCcCh----hhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCC-CCCcCHHHH
Confidence 33445577776 3788899865 555555555 11 1110 114667777763 467999999
Q ss_pred HHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 92 AESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 92 ~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
++.+...++++|++-.-..| ..++...+.+
T Consensus 168 ~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~ 199 (380)
T PLN03026 168 VEAVETHKPKLLFLTSPNNPDGSIISDDDLLK 199 (380)
T ss_pred HHHHhccCCcEEEEeCCCCCCCCCCCHHHHHH
Confidence 98887789999887544333 2234444444
No 174
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=67.23 E-value=12 Score=34.32 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=65.2
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCC-CCCCcccccccCCC-hhHHHHHHHhh------c-------cC---cc
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNL-DPEQWGCNVQPYSG-SPANFAVYTGL------K-------IS---AT 68 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a-~~~~w~~nvqp~SG-~~An~av~~al------~-------~s---~~ 68 (240)
.+.|+..+.-|..-.+.+++ ++....+.+++ +. -+|-..+| +.|+..++.++ + ++ +.
T Consensus 27 ~~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~----~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~p 101 (382)
T TIGR03403 27 YGNPNSLHQFGTATHPAIAE-ALDKLYKGINARDL----DDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHP 101 (382)
T ss_pred CcCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCC----CeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccH
Confidence 34555433333333445544 33444456776 34 25555555 55777666653 1 00 11
Q ss_pred c----------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhh
Q psy10666 69 S----------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDL 136 (240)
Q Consensus 69 g----------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~ 136 (240)
+ .-.++..+|+++ ++.+|.+++++.+. .+++++++.....+ ...|+..+.+ ..+..++...
T Consensus 102 s~~~~~~~~~~~G~~v~~v~~~~-~g~~d~~~l~~~i~-~~t~lv~~~~~~n~tG~~~~~~~I~~-----la~~~g~~~i 174 (382)
T TIGR03403 102 AVRATCAFLESLGVEVTYLPINE-QGTITAEQVREAIT-EKTALVSVMWANNETGMIFPIKEIGE-----ICKERGVLFH 174 (382)
T ss_pred HHHHHHHHHHHCCCEEEEEecCC-CCCCCHHHHHHhcc-cCCeEEEEEcccCCCccccCHHHHHH-----HHHHcCCEEE
Confidence 0 115677788874 47899999988764 36788777543333 4456655554 2333444444
Q ss_pred hCCC
Q psy10666 137 YNEP 140 (240)
Q Consensus 137 ~d~s 140 (240)
.|..
T Consensus 175 vD~a 178 (382)
T TIGR03403 175 TDAV 178 (382)
T ss_pred Eech
Confidence 4443
No 175
>PLN02656 tyrosine transaminase
Probab=66.90 E-value=29 Score=32.51 Aligned_cols=89 Identities=12% Similarity=-0.001 Sum_probs=47.3
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~ 76 (240)
|+...-..++.+...+.....++..... -+|-..+| ++|...++.++ ..++.. .-.++..
T Consensus 69 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 146 (409)
T PLN02656 69 YAPTVGLPQARRAIAEYLSRDLPYKLSL--DDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRY 146 (409)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCc--ccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEE
Confidence 4333334455544445555544432211 24544555 66666677776 112221 1256778
Q ss_pred ccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 77 YKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 77 y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
++++++ +..+|.+++++.+.. ++++|++-
T Consensus 147 i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~ 176 (409)
T PLN02656 147 VDLLPEKGWEVDLDAVEALADQ-NTVALVII 176 (409)
T ss_pred EeCCCcCCCCCCHHHHHHHhcc-CceEEEEE
Confidence 888654 457999999887654 44554443
No 176
>PRK07337 aminotransferase; Validated
Probab=65.87 E-value=43 Score=30.82 Aligned_cols=88 Identities=11% Similarity=0.020 Sum_probs=50.0
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~ 76 (240)
|+......++.+...+..++.++.+... -+|-..+| ++|...++.++ ..++.+ .-.+++.
T Consensus 63 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 140 (388)
T PRK07337 63 YTSALGLAPLREAIAAWYARRFGLDVAP--ERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVL 140 (388)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCh--HhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence 4444445566655556666666653211 24545555 55555566666 112221 1146777
Q ss_pred ccccCC-CcccChHHHHHHHHhhCCCEEEE
Q psy10666 77 YKVNTE-TGLIDYDKLAESARLFKPRLIIA 105 (240)
Q Consensus 77 y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~ 105 (240)
+|++++ +..+|.+++++.+.. ++++|++
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l 169 (388)
T PRK07337 141 VPSGPAERFQLTAADVEAAWGE-RTRGVLL 169 (388)
T ss_pred eecCCccCCcCCHHHHHhhcCc-cceEEEE
Confidence 888754 468999999886654 5566665
No 177
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=65.76 E-value=12 Score=37.30 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-------------ccC------ccc---ccceeee---ccccC
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------------KIS------ATS---IFFESLP---YKVNT 81 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-------------~~s------~~g---~~~~~~~---y~~d~ 81 (240)
-|+++|.++||+++. -...-+-|.||.+|.+|+ |.| .+| .|++... |++
T Consensus 74 eAqe~aA~~fgAd~t----yFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi-- 147 (557)
T COG1982 74 EAQELAARVFGADHT----YFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGI-- 147 (557)
T ss_pred HHHHHHHHHhCCCce----EEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccc--
Confidence 367778889999983 344445578999999998 222 122 2233221 233
Q ss_pred CCcccChHHHHHHHHhhCC--CEEEEeccccc-chhhhhhhhh
Q psy10666 82 ETGLIDYDKLAESARLFKP--RLIIAETIEDL-KLLTKVLLEE 121 (240)
Q Consensus 82 ~~~~ID~d~~~~~a~~~kP--kLIi~G~S~y~-r~~d~~~l~E 121 (240)
-+-||.+.+.+...+++- |++++-.+.|- -..|.+.+.+
T Consensus 148 -~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~ 189 (557)
T COG1982 148 -IGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVE 189 (557)
T ss_pred -cCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHH
Confidence 256999999887776654 45555555554 4467776665
No 178
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=65.66 E-value=14 Score=34.14 Aligned_cols=83 Identities=18% Similarity=0.005 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-------cc-----Cccc----------c----------
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------KI-----SATS----------I---------- 70 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-------~~-----s~~g----------~---------- 70 (240)
+++..+.+.++++++.+.+ --+=.-||+.||.+++.++ ++ ++.| .
T Consensus 79 ~~~~~l~~~l~~~~~~~~~---~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T cd00610 79 EPAVELAELLLALTPEGLD---KVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPL 155 (413)
T ss_pred HHHHHHHHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCC
Confidence 4555666677777874331 1234689999999988876 11 1111 0
Q ss_pred cceeeeccccC-----CCcccChHHHHHHHHhh--CCCEEEEecc
Q psy10666 71 FFESLPYKVNT-----ETGLIDYDKLAESARLF--KPRLIIAETI 108 (240)
Q Consensus 71 ~~~~~~y~~d~-----~~~~ID~d~~~~~a~~~--kPkLIi~G~S 108 (240)
..++..+|.++ +....|.+++++.+.++ ++++|++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~ 200 (413)
T cd00610 156 LPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPI 200 (413)
T ss_pred CCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccc
Confidence 01244455542 12345889999888773 6778887653
No 179
>PRK03321 putative aminotransferase; Provisional
Probab=65.55 E-value=15 Score=33.37 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHhhcCCCCCCcccccccCCChhHHHH-HHHhh-----cc-----Cccc-------ccceeeeccccCCCcccChHHHH
Q psy10666 31 RSLKAFNLDPEQWGCNVQPYSGSPANFA-VYTGL-----KI-----SATS-------IFFESLPYKVNTETGLIDYDKLA 92 (240)
Q Consensus 31 r~~~lF~a~~~~w~~nvqp~SG~~An~a-v~~al-----~~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~~ 92 (240)
.+.++++++. -+|-.-||+++.+. ++.++ +| ++.. .-.+++.++++++ +.+|.|+++
T Consensus 65 ~ia~~~~~~~----~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~ 139 (352)
T PRK03321 65 ALAEHLGVPP----EHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD-HTHDLDAMA 139 (352)
T ss_pred HHHHHhCcCH----HHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC-CCCCHHHHH
Confidence 3444567776 36777888776443 44444 11 1111 1156778888754 679999998
Q ss_pred HHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 93 ESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 93 ~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+.+.. +++++++-....| ..++...+.+
T Consensus 140 ~~~~~-~~~~v~l~~p~NPtG~~~~~~~l~~ 169 (352)
T PRK03321 140 AAITD-RTRLIFVCNPNNPTGTVVTPAELAR 169 (352)
T ss_pred Hhhcc-CCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 87754 8898887544333 2344444444
No 180
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=64.35 E-value=12 Score=35.00 Aligned_cols=107 Identities=12% Similarity=0.079 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhc----c-----Cccccc--ceee--eccccCCCc
Q psy10666 18 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLK----I-----SATSIF--FESL--PYKVNTETG 84 (240)
Q Consensus 18 ~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~----~-----s~~g~~--~~~~--~y~~d~~~~ 84 (240)
+..++++|+. ..+++++++ -+---||+.|..+++.+++ | .+.+.. +... ...+. -+.
T Consensus 53 ~p~~~~le~~----lA~leg~~~-----~v~~~sG~aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~-~~~ 122 (364)
T PRK07269 53 NPTRAKLEET----LAAIESADY-----ALATSSGMSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFH-FTY 122 (364)
T ss_pred CccHHHHHHH----HHHHhCCCe-----EEEeCCHHHHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEE-EEe
Confidence 3447777743 344568887 3567789999988886551 1 111111 1110 00110 023
Q ss_pred ccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 85 LIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
.+|.+++++.+. .++|+|++..-+.| ...|+..+.+ ..+..++....|.+
T Consensus 123 ~~d~~~l~~~i~-~~TklV~lesP~NPtg~~~di~~I~~-----la~~~gi~vvvD~t 174 (364)
T PRK07269 123 ANTEEELIAAIE-EDTDIVYIETPTNPLMVEFDIEKVAK-----LAHAKGAKVIVDNT 174 (364)
T ss_pred cCCHHHHHHhcC-cCceEEEEECCCCCCCeeeCHHHHHH-----HHHHcCCEEEEECC
Confidence 468888877664 47899988877776 3467777766 45566667777765
No 181
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=64.07 E-value=11 Score=35.87 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=57.5
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----ccCcc-----c--ccce--eeeccccCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KISAT-----S--IFFE--SLPYKVNTE 82 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~s~~-----g--~~~~--~~~y~~d~~ 82 (240)
|+-..+.+|+ +..+|.+++. |-+- -||+.|..+++.+| ++=.+ + .+++ ...+++.
T Consensus 53 gnPt~~~le~----~la~Le~g~~----a~~~-~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~-- 121 (386)
T PF01053_consen 53 GNPTVRALEQ----RLAALEGGED----ALLF-SSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE-- 121 (386)
T ss_dssp C-HHHHHHHH----HHHHHHT-SE----EEEE-SSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--
T ss_pred ccccHHHHHH----HHHHhhcccc----eeec-cchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--
Confidence 4554556664 4566778886 4444 49999999999998 22111 1 1111 1112222
Q ss_pred Ccc---cChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHH-HHhhhC
Q psy10666 83 TGL---IDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNRE-IRDLYN 138 (240)
Q Consensus 83 ~~~---ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~e-Ir~~~d 138 (240)
... -|.+++++.++. +.++|++..-.-| ...|+..+.+ .++..+ +...+|
T Consensus 122 v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~-----~a~~~g~~~~vVD 177 (386)
T PF01053_consen 122 VTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAK-----LAKEHGDILVVVD 177 (386)
T ss_dssp EEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHH-----HHHHTTT-EEEEE
T ss_pred EEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHH-----HHHHhCCceEEee
Confidence 112 356777666555 7889999887776 4477877776 444443 555555
No 182
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=63.37 E-value=18 Score=37.18 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-------------ccC------ccc---ccce--eeeccccC
Q psy10666 27 VAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-------------KIS------ATS---IFFE--SLPYKVNT 81 (240)
Q Consensus 27 la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-------------~~s------~~g---~~~~--~~~y~~d~ 81 (240)
-|+++|.++|||++ -.=...| |.+|.+|.+|+ |.| .+| .|+. ...|++-
T Consensus 199 eAe~~aA~~fgAd~-----tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~- 272 (713)
T PRK15399 199 EAEEYIARTFGAEQ-----SYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGIL- 272 (713)
T ss_pred HHHHHHHHHhCCCc-----EEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCc-
Confidence 36788899999997 3445667 78999999998 222 112 1111 1233331
Q ss_pred CCcccCh-----HHHHHHHHhh----CCCEEEEecccccch-hhhhhhhh
Q psy10666 82 ETGLIDY-----DKLAESARLF----KPRLIIAETIEDLKL-LTKVLLEE 121 (240)
Q Consensus 82 ~~~~ID~-----d~~~~~a~~~----kPkLIi~G~S~y~r~-~d~~~l~E 121 (240)
+-|+. +.+++.++++ ||+.+++-.+.|-.. .|.+.+.+
T Consensus 273 --g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~ 320 (713)
T PRK15399 273 --GGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQ 320 (713)
T ss_pred --CCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHH
Confidence 23444 8888887753 567777777777655 57766554
No 183
>PLN02368 alanine transaminase
Probab=63.11 E-value=82 Score=29.83 Aligned_cols=106 Identities=11% Similarity=0.069 Sum_probs=57.7
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChh-HHHHHHHhhc-----------cCccc-------cccee
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSP-ANFAVYTGLK-----------ISATS-------IFFES 74 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~-An~av~~al~-----------~s~~g-------~~~~~ 74 (240)
.|+-..-+.++-+...+...+-++.+... =+|-.-+|++ |...++.++- .++.. .-.++
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~ 179 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTL 179 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEE
Confidence 35544444455444445555555633210 2666777755 6666666651 11111 11567
Q ss_pred eeccccCC-CcccChHHHHHHHHhh-----CCCEE-EEeccccc-chhhhhhhhh
Q psy10666 75 LPYKVNTE-TGLIDYDKLAESARLF-----KPRLI-IAETIEDL-KLLTKVLLEE 121 (240)
Q Consensus 75 ~~y~~d~~-~~~ID~d~~~~~a~~~-----kPkLI-i~G~S~y~-r~~d~~~l~E 121 (240)
++++++++ +..+|.+++++.+... ++|++ ++-+++=. ..++..++++
T Consensus 180 v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~ 234 (407)
T PLN02368 180 VPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 234 (407)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHH
Confidence 88888764 3579999999987653 67854 44443311 2344444444
No 184
>PRK06107 aspartate aminotransferase; Provisional
Probab=62.71 E-value=41 Score=31.25 Aligned_cols=89 Identities=11% Similarity=-0.014 Sum_probs=51.7
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-----cc-----Cccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-----KI-----SATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-----~~-----s~~g-------~~~~~~~ 76 (240)
|+..+...++.+...+..++.++.+... -||-.-+| ++|...++.++ .+ .+.+ .....++
T Consensus 66 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~ 143 (402)
T PRK06107 66 YTLVNGTPALRKAIIAKLERRNGLHYAD--NEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVI 143 (402)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEE
Confidence 5554445566555555666777765321 25777887 57777777666 11 1111 1134556
Q ss_pred ccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 77 YKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 77 y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
++++++ +..+|.+++++.+. .++++|++-
T Consensus 144 v~~~~~~~~~~~~~~l~~~~~-~~~~~v~l~ 173 (402)
T PRK06107 144 VACPEEQGFKLTPEALEAAIT-PRTRWLILN 173 (402)
T ss_pred ecCCcccCCCCCHHHHHhhcC-cCceEEEEE
Confidence 666543 45699999988764 467766553
No 185
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=62.36 E-value=24 Score=32.43 Aligned_cols=84 Identities=10% Similarity=-0.021 Sum_probs=51.4
Q ss_pred hhcCCCCCCcccccccCCC-hhHHHHHHHhh-c-----c-----Cccc-------ccceeeeccccC-C-CcccChHHHH
Q psy10666 34 KAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-K-----I-----SATS-------IFFESLPYKVNT-E-TGLIDYDKLA 92 (240)
Q Consensus 34 ~lF~a~~~~w~~nvqp~SG-~~An~av~~al-~-----~-----s~~g-------~~~~~~~y~~d~-~-~~~ID~d~~~ 92 (240)
+.++++. -+|-..+| ++|...++.++ . + ++.. .-.+++++|+++ + +..+|.+++.
T Consensus 70 ~~~~~~~----~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~ 145 (364)
T PRK04781 70 ALYGCAP----EQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIV 145 (364)
T ss_pred HHhCcCh----HHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHH
Confidence 3457776 48888888 45556666666 1 1 1110 115678888743 2 3468999988
Q ss_pred HHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 93 ESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 93 ~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+.+...++++|++-..+.| ..++...+.+
T Consensus 146 ~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~ 176 (364)
T PRK04781 146 AAALASNAKLVFLCSPSNPAGSAIALDQIER 176 (364)
T ss_pred HHHhccCCeEEEEcCCCCCCCCCcCHHHHHH
Confidence 7777789999988544443 2345444444
No 186
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=62.33 E-value=67 Score=29.43 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccc-ccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeeeccccC
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGC-NVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLPYKVNT 81 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~-nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~y~~d~ 81 (240)
..++-+...+...+-++.+... . +|-..+| ++|...++.++ ...+.. .-.++++||+++
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~--~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~ 146 (383)
T TIGR03540 69 MLAYRQAVADWYKRRFGVELDP--ETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKE 146 (383)
T ss_pred CHHHHHHHHHHHHHhhCCCCCC--CCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCc
Confidence 3445444445555555553210 1 3555566 45666666666 112221 116778899986
Q ss_pred CC-cccChHHHHHHHHhhCCCEEEEec
Q psy10666 82 ET-GLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 82 ~~-~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
++ ..+|.+++++.+. .++|+|++-.
T Consensus 147 ~~g~~~d~~~l~~~~~-~~~~~v~i~~ 172 (383)
T TIGR03540 147 ENGFLPDFDAIPEDIA-KKAKLMFINY 172 (383)
T ss_pred ccCCccCHHHHHhhcc-ccceEEEEeC
Confidence 54 4589999987664 4899888763
No 187
>PLN02231 alanine transaminase
Probab=61.94 E-value=39 Score=33.38 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=51.1
Q ss_pred cCCcccHHHHHHHHHHHHHhhcC--CCCCCcccccccCCC-hhHHHHHHHhhc-c----------Cccc-------ccce
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFN--LDPEQWGCNVQPYSG-SPANFAVYTGLK-I----------SATS-------IFFE 73 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~--a~~~~w~~nvqp~SG-~~An~av~~al~-~----------s~~g-------~~~~ 73 (240)
|+-..-..++=+...+...+-+| ++. -+|-.-+| ++|...++.+|. - .+.. .-.+
T Consensus 164 Y~~s~G~~~lReaIA~~~~~r~g~~~~p----e~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~ 239 (534)
T PLN02231 164 YSHSQGIKGLRDAIAAGIEARDGFPADP----NDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT 239 (534)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCc----ccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCE
Confidence 44444444444333344444334 333 26667777 456666666661 0 1111 1146
Q ss_pred eeeccccCCC-cccChHHHHHHHHhh-----CCCEEEEe
Q psy10666 74 SLPYKVNTET-GLIDYDKLAESARLF-----KPRLIIAE 106 (240)
Q Consensus 74 ~~~y~~d~~~-~~ID~d~~~~~a~~~-----kPkLIi~G 106 (240)
+++|++++++ ..+|.|++++.+.+. +||+|++-
T Consensus 240 ~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~ 278 (534)
T PLN02231 240 LVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVI 278 (534)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 8899998654 579999999987763 68876663
No 188
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=61.78 E-value=56 Score=33.04 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHh
Q psy10666 20 FIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTG 62 (240)
Q Consensus 20 ~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~a 62 (240)
...+||..+++-+++|||.+. -||+-+ -+||.||+..+.+
T Consensus 120 ~~t~lE~~vi~~la~l~G~~~-~~G~~T--sGGT~ANl~aL~~ 159 (608)
T TIGR03811 120 ATSQMEEEVGKEFATLMGYKN-GWGHIV--ADGSLANLEGLWY 159 (608)
T ss_pred hHHHHHHHHHHHHHHHhCCCC-CCeEEe--CChHHHHHHHHHH
Confidence 466899999999999999875 376633 4899999975544
No 189
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=61.27 E-value=85 Score=30.60 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=61.7
Q ss_pred CCCCCcccCCcccHHHHHHHHHHHHHhhcC----CCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc---
Q psy10666 8 SDEEGKYYGGNQFIDEIEIVAQQRSLKAFN----LDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS--- 69 (240)
Q Consensus 8 g~pg~ryy~G~~~id~iE~la~~r~~~lF~----a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g--- 69 (240)
.||.--.|+...-..++-+...+...+.|| ++.+ +|-.-+| ++|...++.+| ...+.+
T Consensus 83 ~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe----~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~ 158 (496)
T PLN02376 83 QFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE----RVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDR 158 (496)
T ss_pred ccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh----hEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHH
Confidence 355555555544455565545566666666 4442 5555666 55667777777 112222
Q ss_pred -----ccceeeeccccCC-CcccChHHHHHHHH-----hhCCCEEEEeccccc--chhhhhhhhhh
Q psy10666 70 -----IFFESLPYKVNTE-TGLIDYDKLAESAR-----LFKPRLIIAETIEDL--KLLTKVLLEET 122 (240)
Q Consensus 70 -----~~~~~~~y~~d~~-~~~ID~d~~~~~a~-----~~kPkLIi~G~S~y~--r~~d~~~l~E~ 122 (240)
.-.+++++|++++ +..+|.+++++.++ ..++|+|++-.-.-| ..++...+.+.
T Consensus 159 ~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L 224 (496)
T PLN02376 159 DLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNL 224 (496)
T ss_pred HHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHH
Confidence 1156788888643 46799999976532 247886665322222 23444444443
No 190
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=61.15 E-value=37 Score=31.91 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=37.3
Q ss_pred ccccCCCh-hHHHHHHHhh----------ccCccc-------ccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSGS-PANFAVYTGL----------KISATS-------IFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG~-~An~av~~al----------~~s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-.-+|+ +|...++.++ ..++.+ .-.+++++|+|++ .+|.|++++.+.. +||+|++=
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~--g~~~~~l~~~~~~-~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE--GMQPEKLERALAQ-GARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC--CCCHHHHHHHHhc-CCCEEEEC
Confidence 56666764 4555566666 112221 1167888888754 3999999887754 89987763
No 191
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.08 E-value=23 Score=33.87 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccccc--c----eeeeccccCCCc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSIF--F----ESLPYKVNTETG 84 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~~--~----~~~~y~~d~~~~ 84 (240)
++++| +...+++++++ .+=--||+.|..+++.+| +| .+.+.+ + ......+..- .
T Consensus 60 ~~~Le----~~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~-d 129 (425)
T PRK06084 60 NDVLE----QRVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFA-A 129 (425)
T ss_pred HHHHH----HHHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEE-C
Confidence 45544 44556678776 344579999999999887 11 121111 0 1011111100 1
Q ss_pred ccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 85 LIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
..|.+++++.+.+ ++++|++.....| ...|+..+.+ .++..++....|.+.
T Consensus 130 ~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~-----la~~~~i~vVvD~a~ 182 (425)
T PRK06084 130 HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALAD-----AAHRHGVPLIVDNTV 182 (425)
T ss_pred CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 2488888887654 7899998643333 5567666655 344445555555543
No 192
>KOG1368|consensus
Probab=60.96 E-value=19 Score=33.67 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=76.5
Q ss_pred CccccCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh--------------ccCc
Q psy10666 2 NRAEMSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------------KISA 67 (240)
Q Consensus 2 ~~~~~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al--------------~~s~ 67 (240)
.+|-+.--.|+--||--...-++|+ +..++||-| +-.-..|||.-|+...+.= ||+.
T Consensus 39 r~am~eA~vgDdVyGeD~tt~rLE~----~vA~l~GKE-----AgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~ 109 (384)
T KOG1368|consen 39 RRAMAEASVGDDVYGEDPTTNRLEQ----RVAELFGKE-----AGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHR 109 (384)
T ss_pred HHHHhhcccCcccccCCccHHHHHH----HHHHHhCcc-----ceeeecccccccHHHHHHHhcCCCceEEeccchheee
Confidence 3444555677888887776778885 455679988 4677789999999877764 2220
Q ss_pred ---cc--ccceeeecccc-CCCcccChHHHHHHHHhhC-----C--CEEEEecccc--c-chhhhhhhhhhhHHHHHhhH
Q psy10666 68 ---TS--IFFESLPYKVN-TETGLIDYDKLAESARLFK-----P--RLIIAETIED--L-KLLTKVLLEETSKWRIKHNR 131 (240)
Q Consensus 68 ---~g--~~~~~~~y~~d-~~~~~ID~d~~~~~a~~~k-----P--kLIi~G~S~y--~-r~~d~~~l~E~~~w~~~~N~ 131 (240)
.| .+-.+..-++. ++++++|.++++..++-.+ | +||.+...-- - +-+|+.++.+...| .+..
T Consensus 110 ~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~l--ak~~ 187 (384)
T KOG1368|consen 110 YEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKAL--AKRH 187 (384)
T ss_pred hhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHH--Hhcc
Confidence 11 22223333443 4568999999999887544 2 6776543322 1 33444444443333 2334
Q ss_pred HHHhhhCCCchh
Q psy10666 132 EIRDLYNEPDVV 143 (240)
Q Consensus 132 eIr~~~d~s~Il 143 (240)
++....|.+.|.
T Consensus 188 glkLH~DGARi~ 199 (384)
T KOG1368|consen 188 GLKLHMDGARIF 199 (384)
T ss_pred CCeeecchhhhh
Confidence 444444444443
No 193
>PRK06460 hypothetical protein; Provisional
Probab=60.46 E-value=18 Score=33.82 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=52.3
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc--C---ccccc-----------ceeeeccccCCCcccCh
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI--S---ATSIF-----------FESLPYKVNTETGLIDY 88 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~--s---~~g~~-----------~~~~~y~~d~~~~~ID~ 88 (240)
+.+.+++++++ .+-.-||+.|+.+++.++ +| + +.+.+ .++..++.+ |.
T Consensus 52 ~~lA~l~g~~~-----~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~------~~ 120 (376)
T PRK06460 52 KKIVELENAEM-----GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG------SD 120 (376)
T ss_pred HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC------CH
Confidence 44567789886 455689999999998887 11 1 11100 223333322 12
Q ss_pred HHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 89 DKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 89 d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
+.+ +.+...++|+|++...+.| ...|..++.+ .++..++....|.+
T Consensus 121 ~~l-~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~-----la~~~g~~vivDea 168 (376)
T PRK06460 121 NII-EKAKSKRYDVVFVENITNPLLRVVDITELSK-----VCKENGSILIVDAT 168 (376)
T ss_pred HHH-HHhcCCCceEEEEECCCCCCCcccCHHHHHH-----HHHHcCCEEEEECC
Confidence 223 3334567889888666554 4566666655 33444455555544
No 194
>PRK07049 methionine gamma-lyase; Validated
Probab=60.35 E-value=78 Score=30.19 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Ccccc---------c--ceeeeccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATSI---------F--FESLPYKV 79 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g~---------~--~~~~~y~~ 79 (240)
.+.+|+ ...++++++. .+=.-||+.|+.+++.++ +| .+.+. . .+++.|+
T Consensus 85 ~~~Le~----~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~- 154 (427)
T PRK07049 85 SEIVED----RLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA- 154 (427)
T ss_pred HHHHHH----HHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEe-
Confidence 455554 3444678775 566789999999999888 11 12221 0 1233443
Q ss_pred cCCCcccChHHHHHHHH----hhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 80 NTETGLIDYDKLAESAR----LFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 80 d~~~~~ID~d~~~~~a~----~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+ ..|.+.+++.+. ..++|+|++..-..| ..+|...+.+
T Consensus 155 --~--~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~ 198 (427)
T PRK07049 155 --D--GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRR 198 (427)
T ss_pred --C--CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHH
Confidence 1 257777765554 357899988866555 4467776666
No 195
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=59.49 E-value=50 Score=32.71 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=59.1
Q ss_pred CcccCCcccHHHHHHHHHHHHHhhcCCCCCCcc-cccccCCC-hhHHHHHHHh-----h-----c-----cCcc------
Q psy10666 12 GKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWG-CNVQPYSG-SPANFAVYTG-----L-----K-----ISAT------ 68 (240)
Q Consensus 12 ~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~-~nvqp~SG-~~An~av~~a-----l-----~-----~s~~------ 68 (240)
..|..........|.++.+..++-++.....-. .||-..+| ++|...++.+ | . ..+.
T Consensus 122 ~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~ 201 (521)
T TIGR03801 122 DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIP 201 (521)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHH
Confidence 344323333677888887776655432210000 16767776 5555666666 3 0 1111
Q ss_pred ---cccceeeeccccCCC------cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhh
Q psy10666 69 ---SIFFESLPYKVNTET------GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEET 122 (240)
Q Consensus 69 ---g~~~~~~~y~~d~~~------~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~ 122 (240)
+.-.++++++.++++ ..+|.+++++. ...++|+|++-.-+.| ..++...+.+.
T Consensus 202 ~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~-~~~~~kai~l~nP~NPTG~vls~e~l~~I 265 (521)
T TIGR03801 202 ELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKL-RDPSIKALFVVNPSNPPSVAMSDESIEKI 265 (521)
T ss_pred HHhcCCcEEEEeecccccccccccCCCCHHHHHHh-cCCCCcEEEEeCCCCCCCCCCCHHHHHHH
Confidence 112456666765432 57999999875 4568898886443333 33454444443
No 196
>PRK07682 hypothetical protein; Validated
Probab=59.48 E-value=59 Score=29.77 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=51.4
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCccc-ccccCCC-hhHHHHHHHhh-----c-----cCccc-------ccceee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGC-NVQPYSG-SPANFAVYTGL-----K-----ISATS-------IFFESL 75 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~-nvqp~SG-~~An~av~~al-----~-----~s~~g-------~~~~~~ 75 (240)
|+......++.+...+...+-|+..... - +|-.-+| ++|+..++.++ . .++.. .-.+++
T Consensus 53 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~ 130 (378)
T PRK07682 53 YTANAGLLELRQEIAKYLKKRFAVSYDP--NDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPV 130 (378)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCC--CCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEE
Confidence 4433445666655566666666653210 1 3445555 67888888777 1 11111 113566
Q ss_pred eccccCC-CcccChHHHHHHHHhhCCCEEEE
Q psy10666 76 PYKVNTE-TGLIDYDKLAESARLFKPRLIIA 105 (240)
Q Consensus 76 ~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~ 105 (240)
+++++++ +..+|.+++++.+. .++++|++
T Consensus 131 ~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~~ 160 (378)
T PRK07682 131 PVATTLENEFKVQPAQIEAAIT-AKTKAILL 160 (378)
T ss_pred EeecCCccCCCCCHHHHHhhcC-cccEEEEE
Confidence 7777643 46899999988664 37888765
No 197
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=59.35 E-value=93 Score=29.94 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhcC----CCCCCcccccccCCChh-HHHHHHHhh----------ccCccc--------ccceeeec
Q psy10666 21 IDEIEIVAQQRSLKAFN----LDPEQWGCNVQPYSGSP-ANFAVYTGL----------KISATS--------IFFESLPY 77 (240)
Q Consensus 21 id~iE~la~~r~~~lF~----a~~~~w~~nvqp~SG~~-An~av~~al----------~~s~~g--------~~~~~~~y 77 (240)
..++-+...+...+-|+ ++. -+|-+-+|++ |...++.+| ...+.+ .-.+++++
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v~~----~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v 163 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTFDP----NKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCcCh----HHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEE
Confidence 33444444444444455 333 2577788854 555666666 112221 11466778
Q ss_pred cccC-CCcccChHHHHHHHHh-----hCCCEEEEeccccc--chhhhhhhhhhhHH
Q psy10666 78 KVNT-ETGLIDYDKLAESARL-----FKPRLIIAETIEDL--KLLTKVLLEETSKW 125 (240)
Q Consensus 78 ~~d~-~~~~ID~d~~~~~a~~-----~kPkLIi~G~S~y~--r~~d~~~l~E~~~w 125 (240)
|+++ ++..+|.+++++.+.+ .+||+|++-.-..| ..++...+.+...|
T Consensus 164 ~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~ 219 (468)
T PLN02450 164 HCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDF 219 (468)
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHH
Confidence 8764 4457899999887665 48886655532223 23444445444333
No 198
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=58.63 E-value=26 Score=32.92 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCccccc-----------ceeeeccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSIF-----------FESLPYKV 79 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~~-----------~~~~~y~~ 79 (240)
.+++|+ +..++++.+. .+--.||+.|...++.++ + ..|.+.+ .++.. +
T Consensus 54 ~~~L~~----~lA~l~g~~~-----~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~--v 122 (386)
T PRK08045 54 RDVVQR----ALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF--V 122 (386)
T ss_pred HHHHHH----HHHHHhCCCe-----EEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEE--e
Confidence 555553 3344567654 456778899999988887 1 1222211 11111 2
Q ss_pred cCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 80 NTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 80 d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+ ..|.+++++.+.+ ++|+|++...+.| ..+|+..+.+ .++..++....|.+.
T Consensus 123 d----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~-----ia~~~g~~vivDeay 176 (386)
T PRK08045 123 D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICH-----LAREAGAVSVVDNTF 176 (386)
T ss_pred C----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 2 3688888876644 8899998766655 4567776666 344445555666554
No 199
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=58.62 E-value=9.4 Score=35.31 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccc-ccCCChhHHHHHHHhh
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNV-QPYSGSPANFAVYTGL 63 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nv-qp~SG~~An~av~~al 63 (240)
++..-..+.+.+.++.+.+ ++ =--||+.||.+++.+|
T Consensus 54 ~~~~~Le~~lA~~~g~~~e----~ilv~~gg~~a~~~~~~al 91 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEE----KILVFNRTSSAILATILAL 91 (346)
T ss_pred HHHHHHHHHHHHHcCCCcc----eEEEECCHHHHHHHHHHHh
Confidence 4555556666777888432 33 3346789999999999
No 200
>PRK06207 aspartate aminotransferase; Provisional
Probab=58.49 E-value=1.1e+02 Score=28.54 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeeeccccC-
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLPYKVNT- 81 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~y~~d~- 81 (240)
..++-+...+..++.++.+... .-+|-.-+| ++|...++.+| ...+.+ .-.++++++++.
T Consensus 80 ~~~LR~aia~~l~~~~g~~~~~-~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~ 158 (405)
T PRK06207 80 DADIRELLAARLAAFTGAPVDA-ADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYL 158 (405)
T ss_pred CHHHHHHHHHHHHHHhCCCCCC-CCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEecccc
Confidence 3445544455666677753210 004555555 55666677776 111221 114566777752
Q ss_pred ---CCcccChHHHHHHHHhhCCCEEEEeccccc
Q psy10666 82 ---ETGLIDYDKLAESARLFKPRLIIAETIEDL 111 (240)
Q Consensus 82 ---~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~ 111 (240)
++..+|.|++++.+.. ++++|++-....|
T Consensus 159 ~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NP 190 (405)
T PRK06207 159 SADKRAGLDLDQLEEAFKA-GVRVFLFSNPNNP 190 (405)
T ss_pred CcccCCCcCHHHHHHhhhh-cCeEEEECCCCCC
Confidence 2467999999887654 5787665444433
No 201
>PRK06290 aspartate aminotransferase; Provisional
Probab=58.41 E-value=1.4e+02 Score=28.04 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcCCC---CCCcccccccCCChhHH-HHHHHhh----------ccCccc-------ccceeeeccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLD---PEQWGCNVQPYSGSPAN-FAVYTGL----------KISATS-------IFFESLPYKV 79 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~---~~~w~~nvqp~SG~~An-~av~~al----------~~s~~g-------~~~~~~~y~~ 79 (240)
..++-+...+...+.++.+ .+ -+|-.-+|++.. ..++.++ ..++.+ .-.+++++|+
T Consensus 83 ~~~lr~aia~~~~~~~g~~~~~~~---~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 83 IQEFKEAAARYMEKVFGVKDIDPV---TEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCc---ceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 4455544455555555543 31 157788986544 4555555 112222 1167889999
Q ss_pred cCCC-cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 80 NTET-GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 80 d~~~-~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
++++ ..+|.+++++.+. .++|+|++-..+.| ..++..++.+
T Consensus 160 ~~~~~~~~d~~~l~~~~~-~~~k~i~l~nP~NPTG~v~s~e~l~~ 203 (410)
T PRK06290 160 LEENNFLPDLDSIPKDIK-EKAKLLYLNYPNNPTGAVATKEFYEE 203 (410)
T ss_pred CCCcCCcCCHHHHHHhhc-ccceEEEEECCCCCCCcCCCHHHHHH
Confidence 8653 5689999988764 48899998743444 3345444444
No 202
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=58.22 E-value=62 Score=29.51 Aligned_cols=95 Identities=12% Similarity=-0.016 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcCC--CCCCcccccccCCChh-HHHHHHHhh----------ccCccc-------ccceeeeccccC
Q psy10666 22 DEIEIVAQQRSLKAFNL--DPEQWGCNVQPYSGSP-ANFAVYTGL----------KISATS-------IFFESLPYKVNT 81 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a--~~~~w~~nvqp~SG~~-An~av~~al----------~~s~~g-------~~~~~~~y~~d~ 81 (240)
.++.+...+..++.++. +. -+|-.-+|++ |...++.++ ..++.+ .-.++++++.+
T Consensus 68 ~~lr~aia~~~~~~~~~~~~~----~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~- 142 (368)
T PRK03317 68 VALRADLAAYLTAQTGVGLTV----ENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA- 142 (368)
T ss_pred HHHHHHHHHHhhhhccCCCCh----hhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC-
Confidence 44554444555555543 33 3666778854 555555555 111111 11445666655
Q ss_pred CCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 82 ETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 82 ~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
++..+|.+++++.+.+.++|+|++-....| ..++..++.+
T Consensus 143 ~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~ 184 (368)
T PRK03317 143 ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEA 184 (368)
T ss_pred CCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 346799999999988889998776543333 3344444443
No 203
>PRK08960 hypothetical protein; Provisional
Probab=58.21 E-value=77 Score=29.18 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeeecccc
Q psy10666 21 IDEIEIVAQQRSLKAFNL--DPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLPYKVN 80 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a--~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~y~~d 80 (240)
.+++.+...+...+.++. +. -+|-..+| ++|...++.++ ...+.+ .-.+++.++++
T Consensus 71 ~~~lr~~ia~~~~~~~g~~~~~----~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 146 (387)
T PRK08960 71 LPALREAIAGFYAQRYGVDVDP----ERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVG 146 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCh----hhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecC
Confidence 556655544555555553 33 25666666 56666666666 111211 11467778887
Q ss_pred CC-CcccChHHHHHHHHhhCCCEEEEec
Q psy10666 81 TE-TGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 81 ~~-~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
++ +..+|.+++++...+....++++-+
T Consensus 147 ~~~~~~~d~~~l~~~~~~~~~~i~i~~p 174 (387)
T PRK08960 147 PDSRYQLTPALVERHWNADTVGALVASP 174 (387)
T ss_pred cccCCCCCHHHHHHHhCccceEEEEECC
Confidence 65 3479999998866544333344444
No 204
>PRK09265 aminotransferase AlaT; Validated
Probab=57.82 E-value=76 Score=29.46 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=38.4
Q ss_pred ccccCCChhH-HHHHHHhh-----c-----cCccc-------ccceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSGSPA-NFAVYTGL-----K-----ISATS-------IFFESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG~~A-n~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-..+|++. ...++.++ + ..+.. .-.+.+.+++|++ +..+|.|++++.+. .++++|++-
T Consensus 97 ~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~ 175 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT-PRTKAIVII 175 (404)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc-ccceEEEEE
Confidence 5666778655 45666666 1 11211 1145667777644 46799999988764 468877665
Q ss_pred ccc
Q psy10666 107 TIE 109 (240)
Q Consensus 107 ~S~ 109 (240)
...
T Consensus 176 ~P~ 178 (404)
T PRK09265 176 NPN 178 (404)
T ss_pred CCC
Confidence 443
No 205
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=56.64 E-value=1.3e+02 Score=27.64 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=50.8
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcCCCC-CCcccccccCCCh-hHHHHHHHhh-----c--c-----Cccc-------ccc
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFNLDP-EQWGCNVQPYSGS-PANFAVYTGL-----K--I-----SATS-------IFF 72 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~a~~-~~w~~nvqp~SG~-~An~av~~al-----~--~-----s~~g-------~~~ 72 (240)
.|+...-..++-+...+...+.++.+. -+..-+|-.-+|+ +|...++.++ . | ++.+ .-.
T Consensus 59 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~ 138 (393)
T TIGR03538 59 TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGA 138 (393)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCC
Confidence 344433344444444455555555431 0000146666774 4555555565 1 1 1111 115
Q ss_pred eeeeccccCCC-cccChHHHHHHHHhhCCCEEEEec
Q psy10666 73 ESLPYKVNTET-GLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 73 ~~~~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
+++.+++++++ ..+|.|++++.+.+ ++|+|++-.
T Consensus 139 ~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~ 173 (393)
T TIGR03538 139 EPYFLNCTAENGFLPDFDAVPESVWR-RCQLLFVCS 173 (393)
T ss_pred eEEEeeccccCCCCCCHHHHHHHHhh-cceEEEEeC
Confidence 67888887554 46899999887654 899988743
No 206
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=56.19 E-value=1.2e+02 Score=27.88 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=26.0
Q ss_pred ceeeeccccCCC-cccChHHHHHHHHhhCCCEEEEe
Q psy10666 72 FESLPYKVNTET-GLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 72 ~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
.+++++|+++++ ..+|.+++++.+. .++|+|++-
T Consensus 139 ~~~~~vp~~~~~~~~~d~~~l~~~~~-~~~k~i~l~ 173 (396)
T PRK09147 139 AEPYFLNCDPANNFAPDFDAVPAEVW-ARTQLLFVC 173 (396)
T ss_pred CEEEEeccCccccCccCHHHHHHHHh-hccEEEEEc
Confidence 567888888654 4799999988664 489998874
No 207
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=55.75 E-value=24 Score=33.09 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=59.1
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----c-----cCccccc--c----e--eeecc
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----K-----ISATSIF--F----E--SLPYK 78 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~-----~s~~g~~--~----~--~~~y~ 78 (240)
|+...+++|+. ..++++++. + +---||+.|..+++.++ + ..+.+.+ + . .....
T Consensus 49 ~~p~~~~le~~----lA~l~g~~~----v-~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~ 119 (382)
T TIGR02080 49 GNPTRDLLQQA----LAELEGGAG----A-VVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVL 119 (382)
T ss_pred CCchHHHHHHH----HHHHhCCCc----E-EEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEE
Confidence 44445666653 444567665 3 33447788998899888 1 1222211 0 0 11222
Q ss_pred ccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 79 VNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 79 ~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
+.+ ..|.+++++.+. .++|+|++...+.| ..+|...+.+ ..+..++....|.+.
T Consensus 120 ~~d---~~d~~~l~~ai~-~~tklV~l~~p~NPtG~~~dl~~I~~-----la~~~g~~vvvD~a~ 175 (382)
T TIGR02080 120 FVD---QGDEQALRAALA-QKPKLVLIETPSNPLLRVVDIAKICH-----LAKAVGAVVVVDNTF 175 (382)
T ss_pred EEC---CCCHHHHHHhcC-cCceEEEEECCCCCCCEecCHHHHHH-----HHHHcCCEEEEECCC
Confidence 221 247788877654 47899888655554 4467766665 334445555566554
No 208
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=55.58 E-value=99 Score=29.20 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=68.0
Q ss_pred cccCCcccHHHHHHHHHHHHHhhcCCCCCCcccc-cccCCC-hhHHHHHHHhh-----cc-----Ccc---c--cc--ce
Q psy10666 13 KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCN-VQPYSG-SPANFAVYTGL-----KI-----SAT---S--IF--FE 73 (240)
Q Consensus 13 ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~n-vqp~SG-~~An~av~~al-----~~-----s~~---g--~~--~~ 73 (240)
.|| -.+-+-++-+...+...+-|+.+... .+ |-+-+| +.|++.++.++ .| ++. . .+ =+
T Consensus 60 ~Y~-~~~G~~~LReaia~~~~~~~~~~~~~--~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~ 136 (393)
T COG0436 60 HYT-PSAGIPELREAIAEKYKRRYGLDVDP--EEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGK 136 (393)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCE
Confidence 555 55557778777788888888755310 12 666666 67788888888 11 111 1 11 25
Q ss_pred eeeccccC--CCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 74 SLPYKVNT--ETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 74 ~~~y~~d~--~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
.+++++++ ++..+|.|++++.+.. |.|+|++=.-+-| ..++...+++
T Consensus 137 ~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~ 187 (393)
T COG0436 137 PVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKA 187 (393)
T ss_pred EEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHH
Confidence 66677654 3689999999999999 9999998655544 3344444444
No 209
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=54.74 E-value=49 Score=30.35 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHhhcCCCCCCcccccccCCChhH-HHHHHHhh-----c-----cCccc-------ccceeeeccccCCCcccChHHHHH
Q psy10666 32 SLKAFNLDPEQWGCNVQPYSGSPA-NFAVYTGL-----K-----ISATS-------IFFESLPYKVNTETGLIDYDKLAE 93 (240)
Q Consensus 32 ~~~lF~a~~~~w~~nvqp~SG~~A-n~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~ 93 (240)
+.+.++++. -+|-..+|++. ...++.++ . .++.+ .-.++.++++++ ++.+|.+++++
T Consensus 80 ia~~~~~~~----~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~ 154 (371)
T PRK05166 80 IAARTGVPA----DRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP-DLGFDLDALCA 154 (371)
T ss_pred HHHHhCcCH----HHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC-CCCCCHHHHHH
Confidence 334567765 36778888654 34444555 1 11111 115677888875 46799999988
Q ss_pred HHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 94 SARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 94 ~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
.+. .++|++++-.-+.| ..++...+.+
T Consensus 155 ~~~-~~~~~v~l~~p~NPtG~~~~~~~~~~ 183 (371)
T PRK05166 155 AVA-RAPRMLMFSNPSNPVGSWLTADQLAR 183 (371)
T ss_pred hhh-cCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 664 48899887443333 3345444444
No 210
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=54.53 E-value=1.1e+02 Score=28.48 Aligned_cols=64 Identities=23% Similarity=0.022 Sum_probs=39.0
Q ss_pred cccCC-ChhHHHHHHHhhc----------cCccc-------ccceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEec
Q psy10666 47 VQPYS-GSPANFAVYTGLK----------ISATS-------IFFESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 47 vqp~S-G~~An~av~~al~----------~s~~g-------~~~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
|-..+ |++|...++.++. ..+.. .-+++..++++++ ++.+|.|++++.+. .+++++++-.
T Consensus 99 ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~i~~ 177 (403)
T TIGR01265 99 VVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD-EKTVAIVVIN 177 (403)
T ss_pred EEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC-cCccEEEEec
Confidence 33344 4788888888871 11111 1156677777654 46799999988764 3577777654
Q ss_pred cccc
Q psy10666 108 IEDL 111 (240)
Q Consensus 108 S~y~ 111 (240)
.+.|
T Consensus 178 p~NP 181 (403)
T TIGR01265 178 PSNP 181 (403)
T ss_pred CCCC
Confidence 4333
No 211
>PRK06348 aspartate aminotransferase; Provisional
Probab=53.92 E-value=1e+02 Score=28.41 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=49.7
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcC--CCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc-------ccce
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFN--LDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS-------IFFE 73 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~--a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~ 73 (240)
.|+-.....++.+...+....-++ ++. =+|-.-+| ++|...++.++ ..++.+ .-.+
T Consensus 61 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~----~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~ 136 (384)
T PRK06348 61 RYTDSGGDVELIEEIIKYYSKNYDLSFKR----NEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGK 136 (384)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCh----hhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCE
Confidence 345444445555544455544443 333 25555666 44555666776 111221 1135
Q ss_pred eeeccccC-CCcccChHHHHHHHHhhCCCEEEEe
Q psy10666 74 SLPYKVNT-ETGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 74 ~~~y~~d~-~~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
++++++++ ++..+|.+++++.+. .++++|++-
T Consensus 137 ~~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~l~ 169 (384)
T PRK06348 137 PIILETYEEDGFQINVKKLEALIT-SKTKAIILN 169 (384)
T ss_pred EEEecCCcCcCCcCCHHHHHHhhC-cCccEEEEe
Confidence 67888754 345799999988654 588988864
No 212
>PRK05764 aspartate aminotransferase; Provisional
Probab=53.46 E-value=75 Score=29.11 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=52.4
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-----cc-----Cccc-------ccceeee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-----KI-----SATS-------IFFESLP 76 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-----~~-----s~~g-------~~~~~~~ 76 (240)
|+......++++...+...+-++..... -++=+-+| ++|...++.++ .| .+.+ .-.+++.
T Consensus 64 Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~ 141 (393)
T PRK05764 64 YTPAAGIPELREAIAAKLKRDNGLDYDP--SQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVF 141 (393)
T ss_pred cCCCCChHHHHHHHHHHHHHHhCCCCCH--HHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEE
Confidence 4444446777666666665555532100 13445555 57888887776 11 1111 1156778
Q ss_pred ccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 77 YKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 77 y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
++++++ +..+|.+++++.+. .+.++|++-
T Consensus 142 ~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~ 171 (393)
T PRK05764 142 VPTGEENGFKLTVEQLEAAIT-PKTKALILN 171 (393)
T ss_pred EecCcccCCcCCHHHHHHhhC-ccceEEEEE
Confidence 888754 45799999988774 467777654
No 213
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=53.30 E-value=1.5e+02 Score=28.34 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=56.4
Q ss_pred ccCCcccHHHHHHHHHHHHHhhcC----CCCCCcccccccCCC-hhHHHHHHHhh----------ccCccc--------c
Q psy10666 14 YYGGNQFIDEIEIVAQQRSLKAFN----LDPEQWGCNVQPYSG-SPANFAVYTGL----------KISATS--------I 70 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r~~~lF~----a~~~~w~~nvqp~SG-~~An~av~~al----------~~s~~g--------~ 70 (240)
||++..-..++-+...+...+.|+ .+. -+|-..+| +.|+..++.+| ...+.+ .
T Consensus 90 ~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p----~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~ 165 (447)
T PLN02607 90 LFQDYHGLKSFRQAMASFMEQIRGGKARFDP----DRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRT 165 (447)
T ss_pred ccCCCcchHHHHHHHHHHHHHhcCCCCCcCH----HHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcC
Confidence 444433344443333344445555 233 14556677 55666666666 111221 0
Q ss_pred cceeeeccccCCC-cccChHHHHHHHHh-----hCCCEEEEeccccc--chhhhhhhhhhhHH
Q psy10666 71 FFESLPYKVNTET-GLIDYDKLAESARL-----FKPRLIIAETIEDL--KLLTKVLLEETSKW 125 (240)
Q Consensus 71 ~~~~~~y~~d~~~-~~ID~d~~~~~a~~-----~kPkLIi~G~S~y~--r~~d~~~l~E~~~w 125 (240)
-.+++++++++++ ..+|.+++++...+ .++|+|++-.-.-| ..++...+.+..+|
T Consensus 166 g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~ 228 (447)
T PLN02607 166 GVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDF 228 (447)
T ss_pred CcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHH
Confidence 1466788887543 46999999887765 57787766322222 23444444444333
No 214
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=51.97 E-value=35 Score=31.61 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=20.1
Q ss_pred HHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 32 SLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 32 ~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
..++++.++ -+=.-||+.||.+++.++
T Consensus 92 l~~~~~~~~-----~~~~~SGs~A~e~al~~a 118 (401)
T PRK00854 92 LAALTGSHK-----VLPMNSGAEAVETAIKAV 118 (401)
T ss_pred HHhhCCCCE-----EEEeCCcHHHHHHHHHHH
Confidence 446677665 344579999999999877
No 215
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=51.25 E-value=46 Score=30.24 Aligned_cols=83 Identities=13% Similarity=0.106 Sum_probs=48.7
Q ss_pred HHhhcCCCCCCcccccccCCChhHHH-HHHHhh-c---------cCccc-------ccceeeeccccCCCcccChHHHHH
Q psy10666 32 SLKAFNLDPEQWGCNVQPYSGSPANF-AVYTGL-K---------ISATS-------IFFESLPYKVNTETGLIDYDKLAE 93 (240)
Q Consensus 32 ~~~lF~a~~~~w~~nvqp~SG~~An~-av~~al-~---------~s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~ 93 (240)
+.++++++. -+|-.-+|++..+ .++.++ . .++.. .-.++..++++ ++.+|.+++++
T Consensus 76 ia~~~~~~~----~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~ 149 (367)
T PRK02731 76 LAEKFGVDP----ERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK--DYGHDLDAMLA 149 (367)
T ss_pred HHHHhCcCH----HHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc--CCCCCHHHHHH
Confidence 334567765 3677888877644 445555 1 11111 11355666663 57899999988
Q ss_pred HHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 94 SARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 94 ~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
.+. .+|++|++..-..| ..++..++.+
T Consensus 150 ~~~-~~~~~v~l~~p~nptG~~~~~~~l~~ 178 (367)
T PRK02731 150 AVT-PRTRLVFIANPNNPTGTYLPAEEVER 178 (367)
T ss_pred HhC-CCCcEEEEeCCCCCCCcCCCHHHHHH
Confidence 775 58898887544433 3345555544
No 216
>PRK06225 aspartate aminotransferase; Provisional
Probab=51.21 E-value=51 Score=30.24 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHHHhhcCCCCCCcccccccCCC-hhHHHHHHHhh-----cc-----Cccc-------ccceeeeccccCC--CcccChH
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSG-SPANFAVYTGL-----KI-----SATS-------IFFESLPYKVNTE--TGLIDYD 89 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG-~~An~av~~al-----~~-----s~~g-------~~~~~~~y~~d~~--~~~ID~d 89 (240)
+.+.++++++. .+|-..+| +.|+..++.++ +| .+.. .-.++++++++.+ ++.+|.+
T Consensus 73 ~~ia~~l~~~~----~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~ 148 (380)
T PRK06225 73 ELILKDLGLDD----DEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPE 148 (380)
T ss_pred HHHHHhcCCCC----CcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHH
Confidence 34445678876 36665555 66667777766 11 1110 1146777887432 3579999
Q ss_pred HHHHHHHhhCCCEEEEe
Q psy10666 90 KLAESARLFKPRLIIAE 106 (240)
Q Consensus 90 ~~~~~a~~~kPkLIi~G 106 (240)
.+++.+. .++++|++-
T Consensus 149 ~l~~~~~-~~~~~v~l~ 164 (380)
T PRK06225 149 LVKENMD-ENTRLIYLI 164 (380)
T ss_pred HHHhhcC-CCceEEEEe
Confidence 9998765 467777644
No 217
>PRK08636 aspartate aminotransferase; Provisional
Probab=51.15 E-value=1.6e+02 Score=27.25 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=54.8
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCCCCCccc-ccccCCC-hhHHHHHHHhh----------ccCccc-------ccceee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGC-NVQPYSG-SPANFAVYTGL----------KISATS-------IFFESL 75 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~~~~w~~-nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~ 75 (240)
|+...-..++-+...+...+.++.+... - +|-.-+| ++|...++.+| ...+.+ .-.+++
T Consensus 67 Y~~~~G~~~lR~~ia~~l~~~~~~~~~~--~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~ 144 (403)
T PRK08636 67 YSVSKGIYKLRLAICNWYKRKYNVDLDP--ETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVH 144 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEE
Confidence 4433334455555556666666643210 1 4667777 55556666776 112221 115777
Q ss_pred eccccCC-CcccChHHH----HHHHHh--hCCCEEEEeccccc--chhhhhhhhh
Q psy10666 76 PYKVNTE-TGLIDYDKL----AESARL--FKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 76 ~y~~d~~-~~~ID~d~~----~~~a~~--~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
++|++.+ +..+|.|.+ ++.+++ .++++|+.-....| ..++..++.+
T Consensus 145 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~ 199 (403)
T PRK08636 145 KMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYER 199 (403)
T ss_pred EEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHH
Confidence 8888643 357998754 555554 35666666432333 3344444444
No 218
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=51.13 E-value=18 Score=29.82 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=24.7
Q ss_pred cCcccccceeeec--ccc-CCCcccChHHHHHHHHhhCCCEEEEecc
Q psy10666 65 ISATSIFFESLPY--KVN-TETGLIDYDKLAESARLFKPRLIIAETI 108 (240)
Q Consensus 65 ~s~~g~~~~~~~y--~~d-~~~~~ID~d~~~~~a~~~kPkLIi~G~S 108 (240)
++-.|.+.++..+ +.. .+...-|.+.+.+++.++||.+|.+|+.
T Consensus 26 ld~~G~v~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~kP~vI~v~g~ 72 (150)
T PF14639_consen 26 LDENGEVLDHLKLVYNERDRERKEEDMERLKKFIEKHKPDVIAVGGN 72 (150)
T ss_dssp E-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--S
T ss_pred ECCCCcEEEEEEEcCCccchHHHHHHHHHHHHHHHHcCCeEEEEcCC
Confidence 4455666555444 222 2223467788999999999999999654
No 219
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=50.31 E-value=1.6e+02 Score=27.01 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=54.4
Q ss_pred cCCcccHHHHHHHHHHHHHhhcCCC--CCCcccccccCCCh-hHHHHHHHhh----------ccCccc-------cccee
Q psy10666 15 YGGNQFIDEIEIVAQQRSLKAFNLD--PEQWGCNVQPYSGS-PANFAVYTGL----------KISATS-------IFFES 74 (240)
Q Consensus 15 y~G~~~id~iE~la~~r~~~lF~a~--~~~w~~nvqp~SG~-~An~av~~al----------~~s~~g-------~~~~~ 74 (240)
|+...-.+++-+...+...+-++.+ .+ -+|-.-+|+ +|...++.++ ..++.. .-.++
T Consensus 65 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~---~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~ 141 (385)
T PRK09276 65 YPSYEGMLEFRKAVADWYKRRFGVELDPE---TEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEP 141 (385)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCCC---CcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEE
Confidence 4433333444444444444444543 21 136666665 5555555565 111211 11567
Q ss_pred eeccccCCC-cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 75 LPYKVNTET-GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 75 ~~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+.+|+++++ ..+|.+++++.+. .++++|++-....| ..++..++.+
T Consensus 142 ~~v~~~~~~g~~~d~~~l~~~~~-~~~~~v~l~~p~NPtG~~~~~~~~~~ 190 (385)
T PRK09276 142 YFMPLKEENGFLPDLDAIPEDVA-KKAKLMFINYPNNPTGAVADLEFFEE 190 (385)
T ss_pred EEEecCCCCCCcCCHHHHHHhcc-ccceEEEEeCCCCCCCCCCCHHHHHH
Confidence 788887553 5689999977654 47898887633333 2344444444
No 220
>PRK09275 aspartate aminotransferase; Provisional
Probab=49.28 E-value=1e+02 Score=30.66 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcc-cccccCCC-hhHHHHHHHhh----------c-----cCcc---------ccccee
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWG-CNVQPYSG-SPANFAVYTGL----------K-----ISAT---------SIFFES 74 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~-~nvqp~SG-~~An~av~~al----------~-----~s~~---------g~~~~~ 74 (240)
..-.|.+|....++-++..+..=. -||=..+| ++|...++.+| . ..+. |.-..+
T Consensus 137 ~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~ 216 (527)
T PRK09275 137 LKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEV 216 (527)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEE
Confidence 455677777666554332210000 15666666 66667777763 0 0111 112455
Q ss_pred eeccccCC-CcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhh
Q psy10666 75 LPYKVNTE-TGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETS 123 (240)
Q Consensus 75 ~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~ 123 (240)
++++.+++ +..+|.+++++. ...++|+|++-..+.| ..++...+.+..
T Consensus 217 v~v~~~~~~~f~~d~~~l~~~-~~~~tkai~l~nP~NPTG~v~s~e~l~~I~ 267 (527)
T PRK09275 217 VHINADEENEWQYPDSELEKL-RDPSIKALFLVNPSNPPSVAMSDESLEKIA 267 (527)
T ss_pred EEeecCcccCCCCCHHHHHhh-cCCCCCEEEEeCCcCCcCCCCCHHHHHHHH
Confidence 66766654 467999999884 4568898887554444 334555555433
No 221
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=48.04 E-value=15 Score=21.62 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=15.4
Q ss_pred CchhhhhhhhcCCCCCCCCC
Q psy10666 163 DSNIRSIWEHQPEGRRPRGR 182 (240)
Q Consensus 163 ~~~~k~v~~~~~~gkR~rGR 182 (240)
..-+..|+..+|+.+||.||
T Consensus 8 spapsdils~~pqs~rppgr 27 (29)
T PF05570_consen 8 SPAPSDILSSKPQSKRPPGR 27 (29)
T ss_pred CCCcHHHHhcCccccCCCCC
Confidence 34566788889999988886
No 222
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=47.60 E-value=40 Score=30.49 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHhhcCCCCCCccccccc-CCChhH-HHHHHHhh-----cc-----Cccc-------ccceeeeccccCCCcccChHHHH
Q psy10666 32 SLKAFNLDPEQWGCNVQP-YSGSPA-NFAVYTGL-----KI-----SATS-------IFFESLPYKVNTETGLIDYDKLA 92 (240)
Q Consensus 32 ~~~lF~a~~~~w~~nvqp-~SG~~A-n~av~~al-----~~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~~ 92 (240)
+.+.++++. -++-. .+|++. ...++.++ +| ++.. .-.++..++.+ +++.+|.++++
T Consensus 78 ia~~~~~~~----~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~l~ 152 (361)
T PRK00950 78 LSKYTGVPV----ENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE-EDFSLDVDSVL 152 (361)
T ss_pred HHHHhCCCH----HHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC-CCCCcCHHHHH
Confidence 344567776 35666 578654 44555555 11 1111 11456666655 34589999998
Q ss_pred HHHHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 93 ESARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 93 ~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+... .+++++++-....| ..++..++.+
T Consensus 153 ~~~~-~~~~~v~~~~p~nptG~~~~~~~l~~ 182 (361)
T PRK00950 153 NAIT-EKTKVIFLCTPNNPTGNLIPEEDIRK 182 (361)
T ss_pred HHhc-cCCCEEEEeCCCCCCCCCcCHHHHHH
Confidence 8664 47888776432222 3455555554
No 223
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=46.30 E-value=53 Score=31.37 Aligned_cols=92 Identities=15% Similarity=0.050 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc---C---ccccc--------ceeeeccccCCCccc
Q psy10666 26 IVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI---S---ATSIF--------FESLPYKVNTETGLI 86 (240)
Q Consensus 26 ~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~---s---~~g~~--------~~~~~y~~d~~~~~I 86 (240)
.-+.+.++++|+++- .+ +-+=+-|||.|+-|+...| ++ + |+.+| .++..+.+.+ +..+
T Consensus 41 ~~~~~~L~~v~~t~~-~~-~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w-g~~v 117 (383)
T COG0075 41 KEVLEKLRKVFGTEN-GD-VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW-GEAV 117 (383)
T ss_pred HHHHHHHHHHhcCCC-Cc-EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC-CCCC
Confidence 446788999999882 11 5666789999999999998 21 1 22111 3455555553 4579
Q ss_pred ChHHHHHHHHhhCC-CEEEEe---cccccchhhhhhhhh
Q psy10666 87 DYDKLAESARLFKP-RLIIAE---TIEDLKLLTKVLLEE 121 (240)
Q Consensus 87 D~d~~~~~a~~~kP-kLIi~G---~S~y~r~~d~~~l~E 121 (240)
|.+++++.+++..+ +++.+= .|.=... |+.++.+
T Consensus 118 ~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln-pl~~I~~ 155 (383)
T COG0075 118 DPEEVEEALDKDPDIKAVAVVHNETSTGVLN-PLKEIAK 155 (383)
T ss_pred CHHHHHHHHhcCCCccEEEEEeccCcccccC-cHHHHHH
Confidence 99999998885543 454433 2222222 5655555
No 224
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=46.05 E-value=43 Score=30.82 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=43.7
Q ss_pred hcCCCCCCcccccccCCChhHHHHHH-Hhh-----cc-----Cccc-------ccceeeeccccCCCcccChHHHHHHHH
Q psy10666 35 AFNLDPEQWGCNVQPYSGSPANFAVY-TGL-----KI-----SATS-------IFFESLPYKVNTETGLIDYDKLAESAR 96 (240)
Q Consensus 35 lF~a~~~~w~~nvqp~SG~~An~av~-~al-----~~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~a~ 96 (240)
.++++. -+|-..+|++.++... .++ .| ++.+ .-.+++.+|++.+ .+|.+++.+.+.
T Consensus 79 ~~~~~~----~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~--~~~~~~l~~~~~ 152 (369)
T PRK08153 79 HHGVAP----ENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD--REDLDALLDAAR 152 (369)
T ss_pred HhCCCH----HHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC--CCCHHHHHHHhc
Confidence 346665 3788999988776544 333 11 1111 1146777887643 589999988888
Q ss_pred hhCCCEEEEe
Q psy10666 97 LFKPRLIIAE 106 (240)
Q Consensus 97 ~~kPkLIi~G 106 (240)
..++++|++-
T Consensus 153 ~~~~~~i~l~ 162 (369)
T PRK08153 153 RENAPLVYLA 162 (369)
T ss_pred ccCCcEEEEe
Confidence 8899998883
No 225
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=44.84 E-value=1.1e+02 Score=28.99 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=42.8
Q ss_pred ccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-..+| ++|...++.+| ..++.. .-.++..|+++++ +..+|.+++++.+... +++|++-
T Consensus 119 ~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~i~i~ 197 (430)
T PLN00145 119 DIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADEN-TVAMVII 197 (430)
T ss_pred hEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcC-ceEEEEe
Confidence 4545555 66777777777 111221 1156777777544 4679999998877654 4555444
Q ss_pred ccccc--chhhhhhhhh
Q psy10666 107 TIEDL--KLLTKVLLEE 121 (240)
Q Consensus 107 ~S~y~--r~~d~~~l~E 121 (240)
..+.| ..++...+.+
T Consensus 198 ~P~NPtG~v~~~~~l~~ 214 (430)
T PLN00145 198 NPNNPCGSVYSYEHLAK 214 (430)
T ss_pred CCCCCCCCCCCHHHHHH
Confidence 43444 2344444444
No 226
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=44.63 E-value=27 Score=26.40 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=22.8
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecc
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETI 108 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S 108 (240)
|++..++.+ ++.+++.+.+.+++|++|.+..+
T Consensus 29 ~~v~~~d~~-----~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 29 HEVDILDAN-----VPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp BEEEEEESS-----B-HHHHHHHHHHTTCSEEEEEES
T ss_pred CeEEEECCC-----CCHHHHHHHHhcCCCcEEEEEcc
Confidence 566555443 45599999999999998777553
No 227
>KOG1411|consensus
Probab=44.57 E-value=1e+02 Score=29.49 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=49.5
Q ss_pred HHHHHHhhcCCCCC----CcccccccCCChhHHH--HHHHhhccC-------------ccccc----ceeeecc-ccCCC
Q psy10666 28 AQQRSLKAFNLDPE----QWGCNVQPYSGSPANF--AVYTGLKIS-------------ATSIF----FESLPYK-VNTET 83 (240)
Q Consensus 28 a~~r~~~lF~a~~~----~w~~nvqp~SG~~An~--av~~al~~s-------------~~g~~----~~~~~y~-~d~~~ 83 (240)
+..-++-+||.++. +--+-||.+|||-|.. |-|.+...+ +...+ +.+..|. .|+++
T Consensus 101 ~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t 180 (427)
T KOG1411|consen 101 NKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKT 180 (427)
T ss_pred HHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccc
Confidence 33445556777542 2237899999986643 334443111 11111 3333333 26788
Q ss_pred cccChHHHHHHHHhhCCCEEEEecccccch
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAETIEDLKL 113 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~ 113 (240)
.-+|++.+.+.+.+.-+.-||+=.-|.--|
T Consensus 181 ~gld~~g~ledl~~~p~gs~ilLhaCaHNP 210 (427)
T KOG1411|consen 181 RGLDFKGMLEDLGEAPEGSIILLHACAHNP 210 (427)
T ss_pred cccchHHHHHHHhcCCCCcEEEeehhhcCC
Confidence 999999988888877776555554444444
No 228
>PLN02509 cystathionine beta-lyase
Probab=44.50 E-value=54 Score=31.90 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=57.5
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----cc-----Ccccc--c---------ceeee
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----KI-----SATSI--F---------FESLP 76 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----~~-----s~~g~--~---------~~~~~ 76 (240)
|+...+.+|+.. .++++++. .+=.-||+.|..+++..+ +| .+.+. + .++..
T Consensus 131 gnpt~~aLE~~l----A~leg~e~-----ai~~~SG~aAi~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~ 201 (464)
T PLN02509 131 GNPTRDALESLL----AKLDKADR-----AFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKR 201 (464)
T ss_pred CCHHHHHHHHHH----HHHhCCCE-----EEEeCcHHHHHHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEE
Confidence 555566666443 34688776 244468887765555433 11 12110 0 12222
Q ss_pred ccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCchhh
Q psy10666 77 YKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPDVVG 144 (240)
Q Consensus 77 y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~Il~ 144 (240)
+ + ..|.+++++.+ ..+.|+|++.....+ ...|+..+.+ .++..++....|.++...
T Consensus 202 v--d----~~d~e~l~~ai-~~~TklV~lesPsNPtG~i~Dl~~I~~-----lAk~~g~~lIVD~A~a~~ 259 (464)
T PLN02509 202 V--N----TTNLDEVAAAI-GPQTKLVWLESPTNPRQQISDIRKIAE-----MAHAQGALVLVDNSIMSP 259 (464)
T ss_pred e--C----CCCHHHHHHhC-CcCCeEEEEECCCCCCCCHHHHHHHHH-----HHHHcCCEEEEECCcccc
Confidence 2 2 24677776655 335688877655444 4567776666 445556666677665433
No 229
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=44.03 E-value=48 Score=30.56 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.6
Q ss_pred cChHHHHHHHHhhCCCEEEEeccc
Q psy10666 86 IDYDKLAESARLFKPRLIIAETIE 109 (240)
Q Consensus 86 ID~d~~~~~a~~~kPkLIi~G~S~ 109 (240)
.|.+.+++.+.. +++.|++.+..
T Consensus 163 ~d~~~l~~~l~~-~~~avivep~~ 185 (389)
T PRK01278 163 GDIEALKAAITP-NTAAILIEPIQ 185 (389)
T ss_pred CCHHHHHHhhCC-CeEEEEEeccc
Confidence 588888887654 78899988764
No 230
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=42.31 E-value=61 Score=20.74 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.3
Q ss_pred CcccChHHHHHHHHhhCCCEEEE
Q psy10666 83 TGLIDYDKLAESARLFKPRLIIA 105 (240)
Q Consensus 83 ~~~ID~d~~~~~a~~~kPkLIi~ 105 (240)
.+.-|.+++.+.++..+|+-+++
T Consensus 15 SgHad~~~L~~~i~~~~p~~vil 37 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVIL 37 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEE
T ss_pred cCCCCHHHHHHHHHhcCCCEEEE
Confidence 37899999999999999987765
No 231
>PRK05967 cystathionine beta-lyase; Provisional
Probab=42.30 E-value=82 Score=29.97 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=59.5
Q ss_pred CCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc--cc---------cee
Q psy10666 16 GGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS--IF---------FES 74 (240)
Q Consensus 16 ~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g--~~---------~~~ 74 (240)
.|+...+.+|+.-. .|-+++. .+=.-||+.|..+++.+| +| .+.+ .+ .++
T Consensus 61 ~gnPt~~~Le~~la----~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v 131 (395)
T PRK05967 61 RGTPTTDALCKAID----ALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEV 131 (395)
T ss_pred CCChHHHHHHHHHH----HHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEE
Confidence 46666666664433 4445654 567788999999999998 21 1111 00 122
Q ss_pred eeccccCCCcccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 75 LPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 75 ~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
..+ |++ |.+.+++.+. .++|+|++...+-| ...|+..+.+ .++..++...+|..
T Consensus 132 ~~v--d~~----~~e~l~~al~-~~TklV~lesPsNP~l~v~dl~~I~~-----la~~~g~~vvVD~t 187 (395)
T PRK05967 132 EYY--DPE----IGAGIAKLMR-PNTKVVHTEAPGSNTFEMQDIPAIAE-----AAHRHGAIVMMDNT 187 (395)
T ss_pred EEe--CCC----CHHHHHHhcC-cCceEEEEECCCCCCCcHHHHHHHHH-----HHHHhCCEEEEECC
Confidence 222 211 2255666543 46899999965443 5567777766 44555566665543
No 232
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=42.09 E-value=1.2e+02 Score=27.91 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=46.1
Q ss_pred hcCCCCCCcccccccCCCh-hHHHHHHHhh-----cc-----Cccc-------ccceeeeccccCCCcccChHHHHHHHH
Q psy10666 35 AFNLDPEQWGCNVQPYSGS-PANFAVYTGL-----KI-----SATS-------IFFESLPYKVNTETGLIDYDKLAESAR 96 (240)
Q Consensus 35 lF~a~~~~w~~nvqp~SG~-~An~av~~al-----~~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~a~ 96 (240)
.++++.+ +|-..+|+ +|...++.++ +| ++.+ .-.+++.+|++ ++.+|.|++++.+.
T Consensus 76 ~~~~~~~----~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~--~~~~d~~~l~~~~~ 149 (366)
T PRK01533 76 KLHVKME----QVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN--NGVYDLDEISSVVD 149 (366)
T ss_pred HhCCCcc----eEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC--CCCcCHHHHHHHhC
Confidence 4577763 67777774 4556666666 11 1111 11567777775 34699999988664
Q ss_pred hhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 97 LFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 97 ~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
.++++|++-.-+.| ..++..++.+
T Consensus 150 -~~~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 150 -NDTKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred -cCCcEEEEeCCCCCCCCCcCHHHHHH
Confidence 47888776543333 2234444433
No 233
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=40.96 E-value=29 Score=30.83 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEE 121 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E 121 (240)
|+++..+.| +-.+.+.+.|+++||.+|...+.+..-++..+.+.|
T Consensus 133 fevidLG~d-----vP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE 177 (227)
T COG5012 133 FEVIDLGRD-----VPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIE 177 (227)
T ss_pred cEEEecCCC-----CCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHH
Confidence 788777765 778999999999999977666655555555544444
No 234
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=40.30 E-value=49 Score=30.47 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 24 IEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 24 iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
....+.+.+.++|+.+. -+=.-|||.||.+++..+
T Consensus 74 ~~~~~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~ 108 (400)
T PTZ00125 74 VLGLAEKYITDLFGYDK-----VLPMNSGAEAGETALKFA 108 (400)
T ss_pred HHHHHHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHH
Confidence 33445555566777654 334679999999988755
No 235
>PRK06855 aminotransferase; Validated
Probab=38.96 E-value=2.8e+02 Score=26.11 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=24.4
Q ss_pred ceeeeccccCCC-cccChHHHHHHHHhh-CCCEEEEe
Q psy10666 72 FESLPYKVNTET-GLIDYDKLAESARLF-KPRLIIAE 106 (240)
Q Consensus 72 ~~~~~y~~d~~~-~~ID~d~~~~~a~~~-kPkLIi~G 106 (240)
.+.+++|+++++ ..+|.|++++.+... +++++++-
T Consensus 142 ~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~ 178 (433)
T PRK06855 142 YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLI 178 (433)
T ss_pred CeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEE
Confidence 455788887644 469999999988753 55665543
No 236
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=38.94 E-value=55 Score=30.03 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 22 DEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 22 d~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
.++-.-|.+.++++|+++. .+.+-+-+-|||.|+-++..+|
T Consensus 43 ~~~~~~~r~~l~~l~~~~~-~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 43 EAIVNEAESDLRELLNIPD-NYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred HHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHHHHHHHHhc
Confidence 3455668999999999832 2336667888999999999998
No 237
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=38.59 E-value=15 Score=29.36 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=12.4
Q ss_pred CCccccc--ccCCChhHHHHHHHh
Q psy10666 41 EQWGCNV--QPYSGSPANFAVYTG 62 (240)
Q Consensus 41 ~~w~~nv--qp~SG~~An~av~~a 62 (240)
|+|+|-| ||||-. |.+|||+-
T Consensus 68 ADyNVaVgnQPHSEV-AALAvFLD 90 (120)
T PF01994_consen 68 ADYNVAVGNQPHSEV-AALAVFLD 90 (120)
T ss_dssp SSEEEESSSS---HH-HHHHHHHH
T ss_pred CCcceeeCCCChHHH-HHHHHHHH
Confidence 5565555 999988 66788765
No 238
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=38.51 E-value=1e+02 Score=28.07 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=48.7
Q ss_pred hhcCCCCCCcccccccCCChh-HHHHHHHhh-c----------cCccc-------ccceeeeccccCCCcccChHHHHHH
Q psy10666 34 KAFNLDPEQWGCNVQPYSGSP-ANFAVYTGL-K----------ISATS-------IFFESLPYKVNTETGLIDYDKLAES 94 (240)
Q Consensus 34 ~lF~a~~~~w~~nvqp~SG~~-An~av~~al-~----------~s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~ 94 (240)
+.+|++. -+|-..+|+. +...++.++ . .++.. .-.+++.+|+++ +..+|.|++++.
T Consensus 68 ~~~g~~~----~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~-~~~~d~~~l~~~ 142 (351)
T PRK01688 68 AYAGVKP----EQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD-NWQLDLPAIADN 142 (351)
T ss_pred HHhCCCH----HHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC-CCCCCHHHHHHh
Confidence 4478887 4788888854 545555555 1 11111 114677788875 478999999886
Q ss_pred HHhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 95 ARLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 95 a~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
+ .++++|++-.-+.| ..++...+.+
T Consensus 143 ~--~~~~lv~l~nPnNPTG~~~~~~~l~~ 169 (351)
T PRK01688 143 L--DGVKVVYVCSPNNPTGNLINPQDLRT 169 (351)
T ss_pred c--cCCcEEEEeCCCCCCCCCCCHHHHHH
Confidence 6 38898887544333 3344444444
No 239
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.25 E-value=85 Score=23.87 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=29.6
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKV 117 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~ 117 (240)
|++..++. .+..+++.+.+.+.+|++|.+..+......+..
T Consensus 28 ~~V~~lg~-----~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~ 68 (119)
T cd02067 28 FEVIDLGV-----DVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMK 68 (119)
T ss_pred CEEEECCC-----CCCHHHHHHHHHHcCCCEEEEeccccccHHHHH
Confidence 66655553 366788999999999998888777555554443
No 240
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=37.23 E-value=3e+02 Score=26.71 Aligned_cols=65 Identities=9% Similarity=0.051 Sum_probs=40.0
Q ss_pred ccccCCChh-HHHHHHHhh----------ccCccc-------ccceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSGSP-ANFAVYTGL----------KISATS-------IFFESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG~~-An~av~~al----------~~s~~g-------~~~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
||-..+|+. |...++.+| ...+.. .-.++++|+++++ +..+|.+++++.+. .++|+|++-
T Consensus 210 ~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~-~~~k~i~i~ 288 (517)
T PRK13355 210 DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKIT-SRTKAIVII 288 (517)
T ss_pred HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcC-cCceEEEEE
Confidence 566777754 445666666 111211 1156788888866 36799999988653 478877665
Q ss_pred ccccc
Q psy10666 107 TIEDL 111 (240)
Q Consensus 107 ~S~y~ 111 (240)
..+.|
T Consensus 289 nP~NP 293 (517)
T PRK13355 289 NPNNP 293 (517)
T ss_pred CCCCC
Confidence 44433
No 241
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=37.02 E-value=2.3e+02 Score=27.41 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=53.1
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-------cc----Cccccc--------
Q psy10666 11 EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-------KI----SATSIF-------- 71 (240)
Q Consensus 11 g~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-------~~----s~~g~~-------- 71 (240)
|.--|+|+...-.+. +-+++.||.+| .+--|-|--|-...|..+ +- -+|..+
T Consensus 71 GDEAYagsrs~~~L~----~avkdifGfq~-----~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~ 141 (471)
T COG3033 71 GDEAYAGSRSYYALA----DAVKDIFGFQY-----TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHI 141 (471)
T ss_pred cchhhcccccHHHHH----HHHHHhcCcee-----eeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHH
Confidence 566788887665554 45788899887 455678887877777766 00 011100
Q ss_pred ---------------cee-eeccccCCCcccChHHHHHHHHhhCCC
Q psy10666 72 ---------------FES-LPYKVNTETGLIDYDKLAESARLFKPR 101 (240)
Q Consensus 72 ---------------~~~-~~y~~d~~~~~ID~d~~~~~a~~~kPk 101 (240)
++. +.||+. |.+|.+++++++.++-+.
T Consensus 142 ~~ng~~~~n~~~~ea~d~~~~~pFK---Gd~D~~kLe~lidevG~~ 184 (471)
T COG3033 142 QINGATPRNVYVDEAFDTEVKYPFK---GNFDLEKLERLIDEVGAD 184 (471)
T ss_pred HhcCCccccccccccccccccCCCC---CccCHHHHHHHHHHhCcc
Confidence 222 356663 889999999999998876
No 242
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=36.95 E-value=75 Score=27.02 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=34.2
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVL 118 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~ 118 (240)
|++.+++.| +-.+++.+.+.+++|++|-+..++.....+...
T Consensus 113 ~~vi~LG~~-----vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~ 154 (197)
T TIGR02370 113 FDVIDLGRD-----VPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKD 154 (197)
T ss_pred cEEEECCCC-----CCHHHHHHHHHHcCCCEEEEccccccCHHHHHH
Confidence 778777765 778999999999999999888887777666543
No 243
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=36.37 E-value=79 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=32.6
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLL 119 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l 119 (240)
|+++.++.+ +..+++.+.+.+++|++|-+..++.....+...+
T Consensus 111 ~~vi~lG~~-----~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~ 153 (201)
T cd02070 111 FEVIDLGRD-----VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEV 153 (201)
T ss_pred CEEEECCCC-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHH
Confidence 666666643 7789999999999999888888777766555443
No 244
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=36.27 E-value=85 Score=29.05 Aligned_cols=64 Identities=20% Similarity=0.126 Sum_probs=39.3
Q ss_pred ccccCCC-hhHHHHHHHhh-----c-----cCccc-------ccceeeeccccCC-CcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSG-SPANFAVYTGL-----K-----ISATS-------IFFESLPYKVNTE-TGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG-~~An~av~~al-----~-----~s~~g-------~~~~~~~y~~d~~-~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-..+| ++|...++.+| + .++.. .-.++++++++++ +..+|.+++++.+. .++++|++.
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~ 175 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID-EKTAALIVN 175 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc-cCceEEEEc
Confidence 3444555 66777777776 1 11111 1156778887654 46799999987664 467888775
Q ss_pred cccc
Q psy10666 107 TIED 110 (240)
Q Consensus 107 ~S~y 110 (240)
....
T Consensus 176 ~p~N 179 (401)
T TIGR01264 176 NPSN 179 (401)
T ss_pred CCCC
Confidence 4433
No 245
>PRK07681 aspartate aminotransferase; Provisional
Probab=35.31 E-value=3.5e+02 Score=24.93 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=26.4
Q ss_pred ceeeeccccCCC-cccChHHHHHHHHhhCCCEEEEe
Q psy10666 72 FESLPYKVNTET-GLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 72 ~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
.++++||+++++ ..+|.+++++.+. .++|+|++-
T Consensus 139 ~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~ 173 (399)
T PRK07681 139 ATSYYMPLKKENDFLPDLELIPEEIA-DKAKMMILN 173 (399)
T ss_pred CEEEEEecCCCCCCcCCHHHHHHhcc-ccceEEEEe
Confidence 678889998654 4689999987663 478988876
No 246
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=34.86 E-value=1.2e+02 Score=27.61 Aligned_cols=71 Identities=18% Similarity=0.057 Sum_probs=40.6
Q ss_pred hhcCCCCCCcccccccCCChh-HHHHHHHhhc--------cCccc-------ccceeeeccccCCC-cccChHHHHHHHH
Q psy10666 34 KAFNLDPEQWGCNVQPYSGSP-ANFAVYTGLK--------ISATS-------IFFESLPYKVNTET-GLIDYDKLAESAR 96 (240)
Q Consensus 34 ~lF~a~~~~w~~nvqp~SG~~-An~av~~al~--------~s~~g-------~~~~~~~y~~d~~~-~~ID~d~~~~~a~ 96 (240)
+.++++.+ +|-+-+|++ |...++.++. ..+.. .-.+++.+++++++ ..+| +++.+.+.
T Consensus 65 ~~~~~~~~----~i~it~Ga~~~l~~~~~~~~~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~ 139 (354)
T PRK06358 65 SFEQLDLE----NVILGNGATELIFNIVKVTKPKKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK 139 (354)
T ss_pred HHhCCChh----hEEECCCHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc
Confidence 34477663 777888854 4445555551 11111 11567888887543 4789 66666553
Q ss_pred hhCCCEEEEecccc
Q psy10666 97 LFKPRLIIAETIED 110 (240)
Q Consensus 97 ~~kPkLIi~G~S~y 110 (240)
.+++++++-....
T Consensus 140 -~~~~~v~~~~P~N 152 (354)
T PRK06358 140 -EEIDLVFLCNPNN 152 (354)
T ss_pred -cCCCEEEEeCCCC
Confidence 3689886643333
No 247
>PRK09028 cystathionine beta-lyase; Provisional
Probab=34.49 E-value=1.3e+02 Score=28.60 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----cc-----Cccc--ccce--eeeccccCCCccc
Q psy10666 21 IDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KI-----SATS--IFFE--SLPYKVNTETGLI 86 (240)
Q Consensus 21 id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~-----s~~g--~~~~--~~~y~~d~~~~~I 86 (240)
.+.+|+. ..+|.+++. + +=--||+.|+.+++.+| +| .+.+ .++. ...++++. ..+
T Consensus 63 ~~~Le~~----iA~le~~~~----~-~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v--~~v 131 (394)
T PRK09028 63 HFAFQAA----IVELEGGAG----T-ALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIET--TYY 131 (394)
T ss_pred HHHHHHH----HHHHhCCCc----E-EEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEE--EEE
Confidence 4566633 334456654 2 34567899999999988 11 1111 0000 01122211 112
Q ss_pred ---ChHHHHHHHHhhCCCEEEEecccccc--hhhhhhhhhhhHHHHHhhHHHHhhhCCC
Q psy10666 87 ---DYDKLAESARLFKPRLIIAETIEDLK--LLTKVLLEETSKWRIKHNREIRDLYNEP 140 (240)
Q Consensus 87 ---D~d~~~~~a~~~kPkLIi~G~S~y~r--~~d~~~l~E~~~w~~~~N~eIr~~~d~s 140 (240)
|.+.+++.+ ..++|+|++..-+.|- ..|+..+.+ .++..++...+|..
T Consensus 132 ~~~~~e~l~~~l-~~~TklV~lespsNPtg~v~dl~~I~~-----la~~~g~~lvvD~t 184 (394)
T PRK09028 132 DPMIGEGIRELI-RPNTKVLFLESPGSITMEVQDVPTLSR-----IAHEHDIVVMLDNT 184 (394)
T ss_pred CCCCHHHHHHhc-CcCceEEEEECCCCCCCcHHHHHHHHH-----HHHHcCCEEEEECC
Confidence 345666654 3578999998777763 456666655 34555566655543
No 248
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.59 E-value=1.1e+02 Score=24.61 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=28.4
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTK 116 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~ 116 (240)
|+++..++| +-.+++.+.|.+++|++|-+..-+-......
T Consensus 28 feVidLG~~-----v~~e~~v~aa~~~~adiVglS~L~t~~~~~~ 67 (128)
T cd02072 28 FNVVNLGVL-----SPQEEFIDAAIETDADAILVSSLYGHGEIDC 67 (128)
T ss_pred CEEEECCCC-----CCHHHHHHHHHHcCCCEEEEeccccCCHHHH
Confidence 888888876 6778999999999999665544333333333
No 249
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=32.80 E-value=61 Score=30.28 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=26.9
Q ss_pred CCCC-CCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 7 SSDE-EGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 7 ~g~p-g~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
+||| |+ .+|+++||+. +++||+++ +++|+..- ..+--|.+|
T Consensus 182 lsYp~gn-----~~Yi~~V~~~----~~~lF~~~------~~~~L~e~-l~f~eYl~l 223 (322)
T PRK02797 182 MGYPANN-----QAYIEEVRQA----GLALFGAE------NFQILTEK-LPFDDYLAL 223 (322)
T ss_pred CCcCCCC-----HHHHHHHHHH----HHHhcCcc------cEEehhhh-CCHHHHHHH
Confidence 5666 44 3688888865 45789876 57777665 345556665
No 250
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.76 E-value=25 Score=29.58 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=52.4
Q ss_pred ccCCcccHHHHHHHHHHH-HHhhcCCCCCCccccc--ccCCChhHHHHHHHhh-------cc--C--------cccccce
Q psy10666 14 YYGGNQFIDEIEIVAQQR-SLKAFNLDPEQWGCNV--QPYSGSPANFAVYTGL-------KI--S--------ATSIFFE 73 (240)
Q Consensus 14 yy~G~~~id~iE~la~~r-~~~lF~a~~~~w~~nv--qp~SG~~An~av~~al-------~~--s--------~~g~~~~ 73 (240)
-++|||.+.+. |.+|+ ..+.|+.+- |+| .++.|-.+-+++|.-+ +| + +.|...+
T Consensus 69 A~Q~CEHlNRA--lvvEr~~ae~~~~e~----VsvvP~~hAGGs~a~~Afq~mkdPV~VE~I~a~aGiDIGdT~IGMHiK 142 (180)
T COG4475 69 AFQGCEHLNRA--LVVEREVAEPFGLEI----VSVVPVLHAGGSMATYAFQQMKDPVEVEHITADAGIDIGDTFIGMHIK 142 (180)
T ss_pred EeehhhhhhhH--hhhhHhhhcccCCee----EEeecccccCcHHHHHHHHHcCCCeEEEEEeccCCccccccceeeeee
Confidence 36799888753 44444 567789886 666 6678877778888877 11 1 2244466
Q ss_pred eeeccccCCCcccChHHHHHHHHhhCCCEEEEecccc
Q psy10666 74 SLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIED 110 (240)
Q Consensus 74 ~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y 110 (240)
-+..|+.|--..| -..--.+..-|||||=-....|
T Consensus 143 ~V~vPvr~~~~~l--G~AhVT~~~SRPKlIGG~RA~Y 177 (180)
T COG4475 143 HVQVPVRPSQREL--GGAHVTAAASRPKLIGGERAKY 177 (180)
T ss_pred eeeeeeehHHHhh--cceeeeehhcCccccccccccc
Confidence 6777776431111 1112245677999774433333
No 251
>PRK08175 aminotransferase; Validated
Probab=32.66 E-value=4e+02 Score=24.52 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=29.8
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhh--CCCEEEEeccccc--chhhhhhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLF--KPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~--kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
.+++.+++++++ .+.+.+++.++.. ++++|++..-..| ..++..++.+
T Consensus 137 ~~~~~v~~~~~~--~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~ 188 (395)
T PRK08175 137 AQVRSVPLVEGV--DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEK 188 (395)
T ss_pred CeEEEEecccCC--CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHH
Confidence 567788887543 3578888877764 7888887632222 3345544444
No 252
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=32.20 E-value=49 Score=26.69 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=18.0
Q ss_pred cChHHHHHHHHhhCCCEEEEec
Q psy10666 86 IDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 86 ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
=+++.+.+++++++|+.+++..
T Consensus 34 ~n~~~L~~q~~~f~p~~v~i~~ 55 (129)
T PF02670_consen 34 SNIEKLAEQAREFKPKYVVIAD 55 (129)
T ss_dssp STHHHHHHHHHHHT-SEEEESS
T ss_pred CCHHHHHHHHHHhCCCEEEEcC
Confidence 4789999999999999877754
No 253
>PLN02724 Molybdenum cofactor sulfurase
Probab=32.19 E-value=1.7e+02 Score=30.49 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=34.4
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 6 MSSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 6 ~~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
+.+.|+.-+..+.+ ..++-+-|.+++.++||++..+. .-|=.-|.|.|+..|..++
T Consensus 62 ~~~np~s~~~~s~~-~~~~~e~aR~~ia~~lga~~~~~-~VvFtsnaT~alnlva~~l 117 (805)
T PLN02724 62 VYGNPHSQSDSSMR-SSDTIESARQQVLEYFNAPPSDY-ACVFTSGATAALKLVGETF 117 (805)
T ss_pred ccCCCCcCcchhhh-HHHHHHHHHHHHHHHhCCCccce-EEEEeCChHHHHHHHHHHC
Confidence 44666654444544 34444558889999999976321 0133446688877777776
No 254
>PRK07505 hypothetical protein; Provisional
Probab=31.96 E-value=1.9e+02 Score=26.80 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=25.8
Q ss_pred cChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhCCCc
Q psy10666 86 IDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYNEPD 141 (240)
Q Consensus 86 ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d~s~ 141 (240)
.|.|.+++.+.. +++++++-....+ ...+...+.+ ..+..++....|..+
T Consensus 167 ~d~~~l~~~~~~-~~~~~vl~~p~~~~G~~~~~~~i~~-----l~~~~~~~li~DEa~ 218 (402)
T PRK07505 167 NDLDALEDICKT-NKTVAYVADGVYSMGGIAPVKELLR-----LQEKYGLFLYIDDAH 218 (402)
T ss_pred CCHHHHHHHHhc-CCCEEEEEecccccCCcCCHHHHHH-----HHHHcCCEEEEECcc
Confidence 378888887644 4565554433333 3345544444 233334555555554
No 255
>KOG0053|consensus
Probab=31.66 E-value=58 Score=31.40 Aligned_cols=105 Identities=20% Similarity=0.165 Sum_probs=68.9
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----ccCcc-----c--cc---ceeeeccccC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KISAT-----S--IF---FESLPYKVNT 81 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~s~~-----g--~~---~~~~~y~~d~ 81 (240)
|+-..+.+|. ...+|-++++ -+---||..|..+++..| |+-++ | .+ |.. .+++
T Consensus 75 ~nPt~~~le~----~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~-~~gi-- 142 (409)
T KOG0053|consen 75 GNPTRDVLES----GIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLP-KFGG-- 142 (409)
T ss_pred CCCchHHHHH----HHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHH-HhCc--
Confidence 3444666664 3445567775 234469998999998888 32222 2 11 222 4444
Q ss_pred CCcccChHHHHHHHHhhCC--CEEEEeccccc--chhhhhhhhhhhHHHHHhhHHHHhhhC
Q psy10666 82 ETGLIDYDKLAESARLFKP--RLIIAETIEDL--KLLTKVLLEETSKWRIKHNREIRDLYN 138 (240)
Q Consensus 82 ~~~~ID~d~~~~~a~~~kP--kLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~eIr~~~d 138 (240)
++-.+|.+++.+++...+| ++|.+..-.-| ...|+.++.+ .++..++...+|
T Consensus 143 e~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~-----la~~~g~~vvVD 198 (409)
T KOG0053|consen 143 EGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLAR-----LAHKYGFLVVVD 198 (409)
T ss_pred eeeeechhhHHHHHHhhccCceEEEEECCCCCccccccHHHHHH-----HHhhCCCEEEEe
Confidence 3457999999888888887 78889887777 4578888877 556666666655
No 256
>PLN02187 rooty/superroot1
Probab=31.64 E-value=2.4e+02 Score=27.04 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=37.9
Q ss_pred ccccCCC-hhHHHHHHHhh----------ccCccc-------ccceeeeccccC-CCcccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSG-SPANFAVYTGL----------KISATS-------IFFESLPYKVNT-ETGLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG-~~An~av~~al----------~~s~~g-------~~~~~~~y~~d~-~~~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|-..+| ++|...++.+| ..++.+ .-.++..+++.+ ++..+|.|++++.+......++++-
T Consensus 133 ~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~n 212 (462)
T PLN02187 133 DIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVIN 212 (462)
T ss_pred cEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeC
Confidence 5555666 56777777777 112222 115677777754 3578999999887654333445554
Q ss_pred cc
Q psy10666 107 TI 108 (240)
Q Consensus 107 ~S 108 (240)
++
T Consensus 213 P~ 214 (462)
T PLN02187 213 PN 214 (462)
T ss_pred CC
Confidence 43
No 257
>KOG0259|consensus
Probab=31.56 E-value=62 Score=31.23 Aligned_cols=64 Identities=20% Similarity=0.088 Sum_probs=46.8
Q ss_pred ccccCCC-hhHHHHHHHhh----------ccCcc-------cccceeeeccccCCC-cccChHHHHHHHHhhCCCEEEEe
Q psy10666 46 NVQPYSG-SPANFAVYTGL----------KISAT-------SIFFESLPYKVNTET-GLIDYDKLAESARLFKPRLIIAE 106 (240)
Q Consensus 46 nvqp~SG-~~An~av~~al----------~~s~~-------g~~~~~~~y~~d~~~-~~ID~d~~~~~a~~~kPkLIi~G 106 (240)
+|---|| +||--.++.+| +..|. ..-+++..|.+-|+. ..||+|.++.+|.+---.|+|.-
T Consensus 128 DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviN 207 (447)
T KOG0259|consen 128 DVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVIN 207 (447)
T ss_pred ceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeC
Confidence 5555666 88888888888 11111 233778888886664 68999999999999888888876
Q ss_pred ccc
Q psy10666 107 TIE 109 (240)
Q Consensus 107 ~S~ 109 (240)
+++
T Consensus 208 P~N 210 (447)
T KOG0259|consen 208 PNN 210 (447)
T ss_pred CCC
Confidence 654
No 258
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.54 E-value=1.2e+02 Score=24.43 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.9
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTK 116 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~ 116 (240)
|+++.++.+ +-.+++.+.|.+++|++|.+..++.......
T Consensus 32 ~eVi~LG~~-----vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~ 71 (137)
T PRK02261 32 FEVINLGVM-----TSQEEFIDAAIETDADAILVSSLYGHGEIDC 71 (137)
T ss_pred CEEEECCCC-----CCHHHHHHHHHHcCCCEEEEcCccccCHHHH
Confidence 888887765 6789999999999999887766666444444
No 259
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.51 E-value=1.2e+02 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.0
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEec
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
|+++..+++ +-.+++.+.|.+++|++|-+.+
T Consensus 30 feVi~LG~~-----v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 30 FNVVNLGVL-----SPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred CEEEECCCC-----CCHHHHHHHHHHcCCCEEEEec
Confidence 888888776 6778999999999999665544
No 260
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=31.25 E-value=58 Score=26.16 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=15.6
Q ss_pred eeeccccCCCcccChHHHHHHHHhhCCCEEE
Q psy10666 74 SLPYKVNTETGLIDYDKLAESARLFKPRLII 104 (240)
Q Consensus 74 ~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi 104 (240)
+...|+.. ....+.+++.+.++..+||+||
T Consensus 131 vl~~p~~g-~~~~~~~~a~~~~~~l~pk~vi 160 (163)
T PF13483_consen 131 VLFLPVGG-PFTMGPEEAAELAERLKPKLVI 160 (163)
T ss_dssp EEEEE--T-TTS--HHHHHHHHHHCT-SEEE
T ss_pred EEEecCCC-CcccCHHHHHHHHHHcCCCEEE
Confidence 44444542 2356777777777777777665
No 261
>KOG1138|consensus
Probab=31.11 E-value=50 Score=32.94 Aligned_cols=43 Identities=5% Similarity=0.237 Sum_probs=33.1
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVL 118 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~ 118 (240)
.++...|+| -.+||.++.++.++.+||.++| +++|.++++.+-
T Consensus 442 mK~i~cpid---trlnfqql~kLlkelqPk~vlc-peaytqp~~~ap 484 (653)
T KOG1138|consen 442 MKIIYCPID---TRLNFQQLPKLLKELQPKIVLC-PEAYTQPIPLAP 484 (653)
T ss_pred ceeEecccc---ccccHHHHHHHHHHhCCCEEEC-hhhhcCCCCccc
Confidence 456677776 4699999999999999995555 677887776443
No 262
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=30.73 E-value=1.4e+02 Score=26.88 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=40.3
Q ss_pred hhcCCCCCCcccccccCCChhHHH-HHHHhh-----cc-----Cccc-------ccceeeeccccCCCcccChHHHHHHH
Q psy10666 34 KAFNLDPEQWGCNVQPYSGSPANF-AVYTGL-----KI-----SATS-------IFFESLPYKVNTETGLIDYDKLAESA 95 (240)
Q Consensus 34 ~lF~a~~~~w~~nvqp~SG~~An~-av~~al-----~~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~a 95 (240)
+.++++. -+|-..+|++..+ .++.++ .| ++.+ .-.++..+|++ ++.+|.+++++.+
T Consensus 75 ~~~~~~~----~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~d~~~l~~~~ 148 (359)
T PRK03158 75 KHLGVDE----EQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK--DGGHDLEAMLKAI 148 (359)
T ss_pred HHhCCCH----HHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC--CCCcCHHHHHHhc
Confidence 3456665 3677777765544 444455 11 1111 11567778886 4679999998765
Q ss_pred HhhCCCEEEEec
Q psy10666 96 RLFKPRLIIAET 107 (240)
Q Consensus 96 ~~~kPkLIi~G~ 107 (240)
. .+++++++-.
T Consensus 149 ~-~~~~~v~i~~ 159 (359)
T PRK03158 149 D-EQTKIVWICN 159 (359)
T ss_pred C-CCCCEEEEeC
Confidence 4 4788887643
No 263
>PRK08114 cystathionine beta-lyase; Provisional
Probab=30.47 E-value=2e+02 Score=27.40 Aligned_cols=113 Identities=8% Similarity=-0.038 Sum_probs=62.3
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh-----ccC-----ccc--ccce--eeeccccCC
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL-----KIS-----ATS--IFFE--SLPYKVNTE 82 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al-----~~s-----~~g--~~~~--~~~y~~d~~ 82 (240)
|+-..+.+|+ +..+|-++++ -+=--||+.|..+++.+| +|= +.+ .+++ ...++++-.
T Consensus 60 ~nPt~~~le~----~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~ 130 (395)
T PRK08114 60 GTLTHFSLQE----AMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTT 130 (395)
T ss_pred CChhHHHHHH----HHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEE
Confidence 4545666664 3344678876 344567999999999988 111 111 1111 011222100
Q ss_pred C-cccChHHHHHHHHhhCCCEEEEeccccc--chhhhhhhhhhhHHHHHhhH--HHHhhhCCCchhh
Q psy10666 83 T-GLIDYDKLAESARLFKPRLIIAETIEDL--KLLTKVLLEETSKWRIKHNR--EIRDLYNEPDVVG 144 (240)
Q Consensus 83 ~-~~ID~d~~~~~a~~~kPkLIi~G~S~y~--r~~d~~~l~E~~~w~~~~N~--eIr~~~d~s~Il~ 144 (240)
. ...|.+++++.+. .++|||++...+.+ ...|+..+.+ .++.. ++...+|.+....
T Consensus 131 ~vd~~d~~~l~~~l~-~~TrlV~~EtpsNp~~~v~DI~~Ia~-----ia~~~g~g~~lvVDnT~a~p 191 (395)
T PRK08114 131 WFDPLIGADIAKLIQ-PNTKVVFLESPGSITMEVHDVPAIVA-----AVRSVNPDAVIMIDNTWAAG 191 (395)
T ss_pred EECCCCHHHHHHhcC-CCceEEEEECCCCCCCEeecHHHHHH-----HHHHhCCCCEEEEECCCccc
Confidence 0 0135667666553 36789988887776 3477777776 34443 3666666554333
No 264
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=30.41 E-value=25 Score=28.59 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHHHhhcCCCCCCcccccccCCChhHHHH--HHHhhccCccc-ccceeeeccccCCCcccChHHH---HHHHHhhC
Q psy10666 26 IVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFA--VYTGLKISATS-IFFESLPYKVNTETGLIDYDKL---AESARLFK 99 (240)
Q Consensus 26 ~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~a--v~~al~~s~~g-~~~~~~~y~~d~~~~~ID~d~~---~~~a~~~k 99 (240)
+|..+..+.|....|.+|+...++.+|--.... |+.++.++..- .+.+..-||--|.|.+.++.+. +.+..+..
T Consensus 46 ~LT~~EKkAlY~isfg~~~~e~~~~~~ewk~v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~N 125 (136)
T cd00922 46 QLTLEEKKALYRISFGETGPEMNAPTGEWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVN 125 (136)
T ss_pred hCCHHHHhhHhhhhhccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCC
Confidence 567788889999999999999999998332222 22222333211 1133334788888888877554 23445566
Q ss_pred CCEEEEeccc
Q psy10666 100 PRLIIAETIE 109 (240)
Q Consensus 100 PkLIi~G~S~ 109 (240)
| |.|.|+
T Consensus 126 P---itG~ss 132 (136)
T cd00922 126 P---ITGYAS 132 (136)
T ss_pred C---Cccccc
Confidence 7 566553
No 265
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.25 E-value=1.1e+02 Score=26.53 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=32.1
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhh
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKV 117 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~ 117 (240)
|+++.++.| +-.+++.+.+.+++|++|.+..++.....+..
T Consensus 117 ~~Vi~LG~~-----vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~ 157 (213)
T cd02069 117 YEVIDLGVM-----VPIEKILEAAKEHKADIIGLSGLLVPSLDEMV 157 (213)
T ss_pred CEEEECCCC-----CCHHHHHHHHHHcCCCEEEEccchhccHHHHH
Confidence 778777765 78899999999999998888777665555443
No 266
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=29.42 E-value=2.3e+02 Score=24.22 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhhccCcccccceeeeccccCCCcccChHHHHHHHHhhCCCEEEEec
Q psy10666 28 AQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 28 a~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al~~s~~g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
.+++..+-||.+| ||+..+.-..-..-+ + ..|+--+..-|+..... .|+++++...+.+|-||++|+
T Consensus 46 ~v~~I~~~WGg~f-----nv~~~~s~~~~i~~~---k--~~G~vvhLtmyga~~~~---~~~~ir~~~~~~~p~LIvvGg 112 (176)
T PRK03958 46 SVEDIVERWGGPF-----EVEVTKSWKKEIREW---K--DGGIVVHLTMYGENIQD---VEPEIREAHRKGEPLLIVVGA 112 (176)
T ss_pred HHHHHHHhcCCce-----EEEEcCCHHHHHHHH---H--hCCcEEEEEEecCCccc---hHHHHHHhhccCCcEEEEEcC
Confidence 4566677778887 777666554333332 2 24555556666665433 788888877668999999996
Q ss_pred ccccc
Q psy10666 108 IEDLK 112 (240)
Q Consensus 108 S~y~r 112 (240)
.-.|.
T Consensus 113 ~gvp~ 117 (176)
T PRK03958 113 EKVPR 117 (176)
T ss_pred CCCCH
Confidence 55443
No 267
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=27.75 E-value=74 Score=27.88 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=21.9
Q ss_pred cccChHHHHHHHHhhCCCEEEEec
Q psy10666 84 GLIDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 84 ~~ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
+.+.-..+++.+++++|+|++||-
T Consensus 164 ~h~GS~alr~~I~~~~P~l~i~GH 187 (224)
T cd07388 164 NEQGSHEVAHLIKTHNPLVVLVGG 187 (224)
T ss_pred CccCHHHHHHHHHHhCCCEEEEcC
Confidence 468889999999999999999994
No 268
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=26.79 E-value=79 Score=29.24 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=25.3
Q ss_pred ceeeeccc-cCCCcccChHHHHHHHHhhCC-CEEEE
Q psy10666 72 FESLPYKV-NTETGLIDYDKLAESARLFKP-RLIIA 105 (240)
Q Consensus 72 ~~~~~y~~-d~~~~~ID~d~~~~~a~~~kP-kLIi~ 105 (240)
.+++++|+ +++++.+|.|++++.+...+| +++++
T Consensus 142 ~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i 177 (396)
T PRK09257 142 LEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLL 177 (396)
T ss_pred CcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEE
Confidence 67788887 455678999999988877666 45544
No 269
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=25.89 E-value=87 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=22.0
Q ss_pred HHHHHHHHhhCCCEEEEecccccchhh
Q psy10666 89 DKLAESARLFKPRLIIAETIEDLKLLT 115 (240)
Q Consensus 89 d~~~~~a~~~kPkLIi~G~S~y~r~~d 115 (240)
+.+.+.+.+..++|||+|.+...+.-.
T Consensus 92 ~~i~~~~~~~~~dliv~G~~~~~~~~~ 118 (140)
T PF00582_consen 92 DAIIEFAEEHNADLIVMGSRGRSGLER 118 (140)
T ss_dssp HHHHHHHHHTTCSEEEEESSSTTSTTT
T ss_pred hhhhhccccccceeEEEeccCCCCccC
Confidence 677888999999999999988555443
No 270
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.83 E-value=49 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.6
Q ss_pred ccChHHHHHHHHhhCCCEEEEeccccc
Q psy10666 85 LIDYDKLAESARLFKPRLIIAETIEDL 111 (240)
Q Consensus 85 ~ID~d~~~~~a~~~kPkLIi~G~S~y~ 111 (240)
.-|++.+.+.|++.++.|+|+|+...+
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 468899999999999999999996544
No 271
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=25.69 E-value=63 Score=22.91 Aligned_cols=27 Identities=22% Similarity=0.051 Sum_probs=20.2
Q ss_pred ccChHHHHHHHH-hhCCCEEEEeccccc
Q psy10666 85 LIDYDKLAESAR-LFKPRLIIAETIEDL 111 (240)
Q Consensus 85 ~ID~d~~~~~a~-~~kPkLIi~G~S~y~ 111 (240)
.=||++..+.|+ +.||-||+++++-++
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~ 30 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCP 30 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTH
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCH
Confidence 347877766555 588999999987776
No 272
>PTZ00376 aspartate aminotransferase; Provisional
Probab=25.42 E-value=2.9e+02 Score=25.65 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=22.3
Q ss_pred ceeeecccc-CCCcccChHHHHHHHHhhCC
Q psy10666 72 FESLPYKVN-TETGLIDYDKLAESARLFKP 100 (240)
Q Consensus 72 ~~~~~y~~d-~~~~~ID~d~~~~~a~~~kP 100 (240)
.+++++|++ +++..+|+|.+++.+++.+|
T Consensus 146 ~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~ 175 (404)
T PTZ00376 146 LNVKEYRYYDPKTKGLDFDGMLEDLRTAPN 175 (404)
T ss_pred CceeeccccCcccCCcCHHHHHHHHHhCCC
Confidence 578888884 34578999999998876554
No 273
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=24.62 E-value=80 Score=25.89 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=21.2
Q ss_pred cChHHHHHHHHhhCCCEEEEec
Q psy10666 86 IDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 86 ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
+|++++.+++++++|..||+|.
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGl 61 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGL 61 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEec
Confidence 7999999999999999999997
No 274
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=23.88 E-value=3e+02 Score=25.02 Aligned_cols=35 Identities=17% Similarity=-0.081 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHh
Q psy10666 23 EIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTG 62 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~a 62 (240)
+++....++..++++.+. -+=..||+.||.+++..
T Consensus 71 ~~~~~la~~l~~~~~~~~-----~~~~~sG~~a~~~A~~~ 105 (377)
T PRK02936 71 SLQEEVASLLAENSAGDL-----VFFCNSGAEANEAALKL 105 (377)
T ss_pred HHHHHHHHHHHhcCCCCE-----EEEeCCcHHHHHHHHHH
Confidence 344444445555555432 23468999999999985
No 275
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=23.45 E-value=2.1e+02 Score=25.90 Aligned_cols=79 Identities=9% Similarity=0.071 Sum_probs=48.4
Q ss_pred hcCCCCCCcccccccCCCh-hHHHHHHHhhc------c-----Cccc-------ccceeeeccccCCCcccChHHHHHHH
Q psy10666 35 AFNLDPEQWGCNVQPYSGS-PANFAVYTGLK------I-----SATS-------IFFESLPYKVNTETGLIDYDKLAESA 95 (240)
Q Consensus 35 lF~a~~~~w~~nvqp~SG~-~An~av~~al~------~-----s~~g-------~~~~~~~y~~d~~~~~ID~d~~~~~a 95 (240)
.++++. -+|=..+|+ +|...++.++. | ++.. .-.++..+|+++ ++.+|.+.+++ .
T Consensus 72 ~~~~~~----~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~-~~~~~~~~l~~-~ 145 (354)
T PRK04635 72 YAGVAP----EQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA-DYQLPLDYIEQ-L 145 (354)
T ss_pred HhCcCH----HHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC-CCCCCHHHHHh-c
Confidence 468887 378888886 45556666661 1 1111 115677888874 46799988863 2
Q ss_pred HhhCCCEEEEeccccc--chhhhhhhhh
Q psy10666 96 RLFKPRLIIAETIEDL--KLLTKVLLEE 121 (240)
Q Consensus 96 ~~~kPkLIi~G~S~y~--r~~d~~~l~E 121 (240)
.++|+|++-.-..| ..++...+.+
T Consensus 146 --~~~~li~i~nP~NPTG~~~~~~~l~~ 171 (354)
T PRK04635 146 --DGAKLVFICNPNNPTGTVIDRADIEQ 171 (354)
T ss_pred --cCCCEEEEeCCCCCCCccCCHHHHHH
Confidence 48899887544444 3355555555
No 276
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=23.33 E-value=3.3e+02 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=19.4
Q ss_pred HHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 30 QRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 30 ~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
+++.++++.+. -+=.-||++|+.+++.++
T Consensus 88 ~~l~~~~~~~~-----v~~~~gg~eA~~~al~~a 116 (396)
T PRK02627 88 EKLVELSGMDK-----VFFCNSGAEANEAAIKLA 116 (396)
T ss_pred HHHHhhcCCCE-----EEECCCcHHHHHHHHHHH
Confidence 44445566654 234468999999998865
No 277
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.07 E-value=1.5e+02 Score=26.71 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccCCChhHH---HHHHHhhccCcccccceeeecccc---CCCcccChHHHHHHHHh
Q psy10666 24 IEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPAN---FAVYTGLKISATSIFFESLPYKVN---TETGLIDYDKLAESARL 97 (240)
Q Consensus 24 iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An---~av~~al~~s~~g~~~~~~~y~~d---~~~~~ID~d~~~~~a~~ 97 (240)
+---++..++++|++.- .++.- ||+-..- .+...|+.....|.+.++++-|-. .....++.++++++.++
T Consensus 171 ~dl~ai~~lk~~~~lPV---ivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~ 246 (250)
T PRK13397 171 LDIMAVPIIQQKTDLPI---IVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQE 246 (250)
T ss_pred cCHHHHHHHHHHhCCCe---EECCC-CCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHH
Confidence 33456677788888761 02444 7655422 233334455666777777665532 12356999999999999
Q ss_pred hCCC
Q psy10666 98 FKPR 101 (240)
Q Consensus 98 ~kPk 101 (240)
.+|+
T Consensus 247 ~~~~ 250 (250)
T PRK13397 247 LWQD 250 (250)
T ss_pred hccC
Confidence 8874
No 278
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=22.98 E-value=3.8e+02 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=24.4
Q ss_pred ceeeeccccC-CCcccChHHHHHHHHhhCCCEEEEecc
Q psy10666 72 FESLPYKVNT-ETGLIDYDKLAESARLFKPRLIIAETI 108 (240)
Q Consensus 72 ~~~~~y~~d~-~~~~ID~d~~~~~a~~~kPkLIi~G~S 108 (240)
.++..+++++ ++..+|.|++++.+....+.++++-++
T Consensus 143 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~ 180 (409)
T PLN00143 143 LEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPG 180 (409)
T ss_pred CEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCC
Confidence 5667777754 345799999988765544455555544
No 279
>PRK07568 aspartate aminotransferase; Provisional
Probab=22.89 E-value=5.2e+02 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=22.7
Q ss_pred ceeeeccccCCCcc--cChHHHHHHHHhhCCCEEEEec
Q psy10666 72 FESLPYKVNTETGL--IDYDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 72 ~~~~~y~~d~~~~~--ID~d~~~~~a~~~kPkLIi~G~ 107 (240)
.++++++++++++. .|.|++++.+. .++++|++-.
T Consensus 134 ~~~~~v~~~~~~g~~~~~~~~l~~~~~-~~~~~v~i~~ 170 (397)
T PRK07568 134 VKIVPVTTKIEEGFHLPSKEEIEKLIT-PKTKAILISN 170 (397)
T ss_pred CEEEEeecCcccCCCCCCHHHHHHhcC-ccceEEEEEC
Confidence 46677888654442 36788887654 4677776543
No 280
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=22.58 E-value=1.1e+02 Score=28.35 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh
Q psy10666 17 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL 63 (240)
Q Consensus 17 G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al 63 (240)
..++.+ +=.-+.+.++++|++.- ++.+-+-+-||+.|+-++...|
T Consensus 43 ~~~f~~-~~~~~~~~l~~l~~~~~-~~~v~~~~gsgt~~~Ea~~~nl 87 (360)
T PRK05355 43 SKEFEA-VAEEAEADLRELLNIPD-NYKVLFLQGGASLQFAMVPMNL 87 (360)
T ss_pred CHHHHH-HHHHHHHHHHHHhCCCC-CcEEEEEcCCchHHHHHHHHhc
Confidence 344333 33457888999999721 1226678899999999998887
No 281
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=22.33 E-value=89 Score=25.51 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCEEEEecccccchhhh
Q psy10666 89 DKLAESARLFKPRLIIAETIEDLKLLTK 116 (240)
Q Consensus 89 d~~~~~a~~~kPkLIi~G~S~y~r~~d~ 116 (240)
+.+.+++++++|++|++|.+..-+.+-.
T Consensus 73 ~al~~~i~~~~p~~Vl~~~t~~g~~la~ 100 (168)
T cd01715 73 PALVALAKKEKPSHILAGATSFGKDLAP 100 (168)
T ss_pred HHHHHHHHhcCCCEEEECCCccccchHH
Confidence 5567788888999999999998776554
No 282
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=21.78 E-value=85 Score=25.21 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=23.6
Q ss_pred CcccChHHHHHHHHhhCCCEEEEecc
Q psy10666 83 TGLIDYDKLAESARLFKPRLIIAETI 108 (240)
Q Consensus 83 ~~~ID~d~~~~~a~~~kPkLIi~G~S 108 (240)
+..-+++++.+++++++|..||+|..
T Consensus 35 ~~~~~~~~l~~li~~~~i~~iVvGlP 60 (135)
T PF03652_consen 35 NREKDIEELKKLIEEYQIDGIVVGLP 60 (135)
T ss_dssp CCCCCHHHHHHHHHHCCECEEEEEEE
T ss_pred CCchHHHHHHHHHHHhCCCEEEEeCC
Confidence 34799999999999999999999985
No 283
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=21.53 E-value=4.5e+02 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcCC-CCCCcccccc-cCCChhHHHHHHHhh
Q psy10666 23 EIEIVAQQRSLKAFNL-DPEQWGCNVQ-PYSGSPANFAVYTGL 63 (240)
Q Consensus 23 ~iE~la~~r~~~lF~a-~~~~w~~nvq-p~SG~~An~av~~al 63 (240)
++|..+.+...++|.. |. || .-|||.|+|.+...-
T Consensus 93 e~Ei~~Aell~~~~p~~e~------vrfvnSGTEAtmsAiRlA 129 (432)
T COG0001 93 ELEVELAELLIERVPSIEK------VRFVNSGTEATMSAIRLA 129 (432)
T ss_pred HHHHHHHHHHHHhcCcccE------EEEecchhHHHHHHHHHH
Confidence 6776667888888887 43 44 569999999887654
No 284
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=21.42 E-value=1e+02 Score=23.83 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhCCCEEEEecc
Q psy10666 88 YDKLAESARLFKPRLIIAETI 108 (240)
Q Consensus 88 ~d~~~~~a~~~kPkLIi~G~S 108 (240)
.+.+.+.|++++++|||+|..
T Consensus 92 ~~~I~~~a~~~~~DLIV~Gs~ 112 (144)
T PRK15118 92 GQVLVDAIKKYDMDLVVCGHH 112 (144)
T ss_pred HHHHHHHHHHhCCCEEEEeCc
Confidence 578888999999999999997
No 285
>KOG1359|consensus
Probab=21.22 E-value=1.8e+02 Score=27.39 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=58.3
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHhhcCCCCCCcccccccCCChhHHHHHHHhh----------ccCccccc--ce-
Q psy10666 7 SSDEEGKYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL----------KISATSIF--FE- 73 (240)
Q Consensus 7 ~g~pg~ryy~G~~~id~iE~la~~r~~~lF~a~~~~w~~nvqp~SG~~An~av~~al----------~~s~~g~~--~~- 73 (240)
.|..+-||.-|++.|.+.=+--+.+ |.-.-+ .+-.-||-.||++.|-|+ .+||.++. ..
T Consensus 99 aGlssvrfIcGtq~iHk~LE~kiAq----fh~rED----~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirL 170 (417)
T KOG1359|consen 99 AGLSSVRFICGTQDIHKLLESKIAQ----FHGRED----TILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRL 170 (417)
T ss_pred CCccceeEEecchHHHHHHHHHHHH----HhCCCc----eEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHH
Confidence 3566778888888776533222222 333321 334458889999999998 23444322 00
Q ss_pred eeeccccCCCcccChHHHHHHHHhhCCCEEEEecccccchhhhhhhhh
Q psy10666 74 SLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIEDLKLLTKVLLEE 121 (240)
Q Consensus 74 ~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y~r~~d~~~l~E 121 (240)
...|.-- ...||+.--+-+.++|-|||+.+. .+...=|+..++|
T Consensus 171 ckry~h~---dv~~l~~~l~~a~k~r~klv~TDg-~FSMDGdiaPl~e 214 (417)
T KOG1359|consen 171 CKRYRHV---DVFDLEHCLISACKMRLKLVVTDG-VFSMDGDIAPLEE 214 (417)
T ss_pred Hhhhccc---hhHHHHHHHHHhhhheEEEEEecc-eeccCCCcccHHH
Confidence 0122210 134444444556678888887764 5666667777776
No 286
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.16 E-value=83 Score=25.63 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhCCCEEEEec
Q psy10666 88 YDKLAESARLFKPRLIIAET 107 (240)
Q Consensus 88 ~d~~~~~a~~~kPkLIi~G~ 107 (240)
..++.+.+++++|++|||=.
T Consensus 78 ~~~l~~~l~~~~PD~IIsTh 97 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTH 97 (169)
T ss_pred HHHHHHHHhhcCCCEEEECC
Confidence 45788888999999998754
No 287
>PRK08637 hypothetical protein; Provisional
Probab=20.47 E-value=1.3e+02 Score=27.67 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=23.0
Q ss_pred ceeeeccccCCCcccChHHHHHHHH--hhCCCEEE
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESAR--LFKPRLII 104 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~--~~kPkLIi 104 (240)
.++++||++.+++.+|.|++++.++ ..++++++
T Consensus 116 ~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~ 150 (388)
T PRK08637 116 AEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIV 150 (388)
T ss_pred CEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEE
Confidence 5788888843445689999988776 34555543
No 288
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=20.35 E-value=3.3e+02 Score=24.68 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=39.3
Q ss_pred hcCCCCCCcccccccCCChh-HHHHHHHhhc--------cCccc-------ccceeeeccccCCC-cccChHHHHHHHHh
Q psy10666 35 AFNLDPEQWGCNVQPYSGSP-ANFAVYTGLK--------ISATS-------IFFESLPYKVNTET-GLIDYDKLAESARL 97 (240)
Q Consensus 35 lF~a~~~~w~~nvqp~SG~~-An~av~~al~--------~s~~g-------~~~~~~~y~~d~~~-~~ID~d~~~~~a~~ 97 (240)
.|+++. -+|-..+|++ |...++.++. .++.. .-.+++.+|+++++ ..+| +++.+.+ .
T Consensus 67 ~~~~~~----~~i~it~Ga~~~l~~~~~~l~~g~viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~-~ 140 (356)
T PRK08056 67 HHQVPA----SWILAGNGETESIFAVVSGLKPRRAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEAL-T 140 (356)
T ss_pred HhCcCh----hhEEECCCHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhc-c
Confidence 457776 3677777754 4445555561 11111 11567788887544 3566 3444433 3
Q ss_pred hCCCEEEEeccccc
Q psy10666 98 FKPRLIIAETIEDL 111 (240)
Q Consensus 98 ~kPkLIi~G~S~y~ 111 (240)
.++|+|++..-+.|
T Consensus 141 ~~~k~v~l~~p~NP 154 (356)
T PRK08056 141 PDLDCLFLCTPNNP 154 (356)
T ss_pred CCCCEEEEeCCcCC
Confidence 67899887544443
No 289
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.20 E-value=2.4e+02 Score=21.70 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=25.7
Q ss_pred ceeeeccccCCCcccChHHHHHHHHhhCCCEEEEecccc
Q psy10666 72 FESLPYKVNTETGLIDYDKLAESARLFKPRLIIAETIED 110 (240)
Q Consensus 72 ~~~~~y~~d~~~~~ID~d~~~~~a~~~kPkLIi~G~S~y 110 (240)
|+++..+. .+..+++.+.+.+.+|++|.+..+..
T Consensus 28 ~~vi~lG~-----~vp~e~~~~~a~~~~~d~V~iS~~~~ 61 (122)
T cd02071 28 FEVIYTGL-----RQTPEEIVEAAIQEDVDVIGLSSLSG 61 (122)
T ss_pred CEEEECCC-----CCCHHHHHHHHHHcCCCEEEEcccch
Confidence 66665554 37778899999999999888876643
Done!