RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10666
         (240 letters)



>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
           (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 463

 Score = 93.6 bits (232), Expect = 1e-22
 Identities = 67/120 (55%), Positives = 84/120 (70%), Gaps = 27/120 (22%)

Query: 13  KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
           +YYGG + +DEIE++ Q+R+L+AF+LDP QWG NVQPYSGSPAN AVYT L         
Sbjct: 63  RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG 122

Query: 64  ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
                             +ISATSIFFES+PYK+N +TGLIDY++LA +ARLF+PRLIIA
Sbjct: 123 LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 182


>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 470

 Score = 89.7 bits (222), Expect = 2e-21
 Identities = 66/120 (55%), Positives = 80/120 (66%), Gaps = 27/120 (22%)

Query: 13  KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
           +YYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAVYT L         
Sbjct: 67  RYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG 126

Query: 64  ------------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
                             KISATSIFFES+ YKVN +TG IDYD+L E+ARLF P+LIIA
Sbjct: 127 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA 186


>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 405

 Score = 71.2 bits (174), Expect = 5e-15
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 26/115 (22%)

Query: 13  KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVY------------ 60
           +YYGG +++D +E +A++R+ + F  +      NVQP+SG+ AN AVY            
Sbjct: 59  RYYGGCEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLG 114

Query: 61  ----------TGLKISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
                      G  ++ + + +  + Y V+ ET +IDYD + E ARL +P+LI+A
Sbjct: 115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA 169


>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
           coli [TaxId: 562]}
          Length = 416

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 27/115 (23%)

Query: 13  KYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVYTGL--------- 63
           +YYGG +++D +E +A  R+ + F  D      NVQP+SGS ANFAVYT L         
Sbjct: 62  RYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLG 117

Query: 64  -------------KISATSIFFESLPYKVNTETGLIDYDKLAESARLFKPRLIIA 105
                         ++ +   +  +PY ++  TG IDY  L + A+  KP++II 
Sbjct: 118 MNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIG 171


>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
           sapiens), 1B [TaxId: 9606]}
          Length = 297

 Score = 27.0 bits (59), Expect = 1.8
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 160 REEDSNIRSIWEHQP--EGRRPRGRPKNRWKDQVRKDMTILNLTTEDS 205
                +IR      P    + P+ + +NR++D    D + + L  ED+
Sbjct: 16  AAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDN 63


>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
           mu [TaxId: 9606]}
          Length = 278

 Score = 25.9 bits (56), Expect = 4.9
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 156 HVQRREEDSNIR------SIWEHQP----EGRRPRGRPKNRWKDQVRKDMTILNLTTEDS 205
           H+ + +            S +E Q       ++   R KNR+ + +  D + + L T + 
Sbjct: 10  HITQMKCAEGYGFKEEYESFFEGQSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQTIEG 69


>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
           T-cell [TaxId: 9606]}
          Length = 273

 Score = 25.2 bits (54), Expect = 8.4
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 160 REEDSNIRSIWEHQP--EGRRPRGRPKNRWKDQVRKDMTILNLTTEDS 205
           +     IR+     P    + P  R +NR++D    D + + L   ++
Sbjct: 15  QPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAEN 62


>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
           shp-1 [TaxId: 9606]}
          Length = 284

 Score = 25.2 bits (54), Expect = 8.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 175 EGRRPRGRPKNRWKDQVRKDMTILNLTTEDS 205
           EG+RP  + KNR+K+ +  D + + L   DS
Sbjct: 22  EGQRPENKGKNRYKNILPFDHSRVILQGRDS 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 909,267
Number of extensions: 43071
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 11
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)