BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10669
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 179/464 (38%), Positives = 235/464 (50%), Gaps = 132/464 (28%)
Query: 2 SSSTMLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEG 61
S ML L +D E+Y +IKKE +RQ G+ELIASENF S AVLE LGSCL NKYSEG
Sbjct: 16 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEG 75
Query: 62 LPGKRYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVC-------- 113
PG+RYYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAV
Sbjct: 76 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 135
Query: 114 --------------------EKALPTNNARFDFLS------SGTTCYSRCLDYAR----- 142
+K + + F+ ++ +G Y R + AR
Sbjct: 136 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 195
Query: 143 -----------------FRQICDETDSIMFADMSHISGL-IAGV---------------- 168
R+I DE + + ADM+HISGL +AGV
Sbjct: 196 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 255
Query: 169 --------------KGV----TKTGEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAM 210
+GV KTG++ILY+ E IN+AVFP LQGGPHNHAI +A A+
Sbjct: 256 KTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVAL 315
Query: 211 LQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELV 270
QA + EFK YQ QV AN LS +++ GY +VTGG+D HLIL+DLR G + E V
Sbjct: 316 KQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKV 375
Query: 271 LEEIAIACNKNT---------------------------------------GISLAAEIQ 291
LE +IACNKNT GI L +IQ
Sbjct: 376 LEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQ 435
Query: 292 AISGPK--LVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
+GP+ L +F+ L +E + V AL++E+E ++ F +PG
Sbjct: 436 DDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 479
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 177/464 (38%), Positives = 233/464 (50%), Gaps = 132/464 (28%)
Query: 2 SSSTMLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEG 61
S ML L +D E+Y +IKKE +RQ G+ELIASENF S AVLE LGSCL NKYSEG
Sbjct: 3 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEG 62
Query: 62 LPGKRYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVC-------- 113
PG+RYYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAV
Sbjct: 63 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 122
Query: 114 --------------------EKALPTNNARFDFLS------SGTTCYSRCLDYAR----- 142
+K + + F+ ++ +G Y R + AR
Sbjct: 123 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 182
Query: 143 -----------------FRQICDETDSIMFADMSHISGLIA------------------- 166
R+I DE + + ADM+HISGL+
Sbjct: 183 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 242
Query: 167 ---------------GVKGV-TKTGEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAM 210
GV+ V KTG++ILY+ E IN+AVFP LQGGPHNHAI +A A+
Sbjct: 243 KTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVAL 302
Query: 211 LQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELV 270
QA + EFK YQ QV AN LS +++ GY +VTGG+D HLIL+DLR G + E V
Sbjct: 303 KQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKV 362
Query: 271 LEEIAIACNKNT---------------------------------------GISLAAEIQ 291
LE +IACNKNT GI L +IQ
Sbjct: 363 LEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQ 422
Query: 292 AISGPK--LVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
+GP+ L +F+ L +E + V AL++E+E ++ F +PG
Sbjct: 423 DDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 466
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 235/464 (50%), Gaps = 132/464 (28%)
Query: 2 SSSTMLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEG 61
S ML L +D E+Y +IKKE +RQ G+ELIASENF S AVLE LGSCL NKYS+G
Sbjct: 16 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQG 75
Query: 62 LPGKRYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVC-------- 113
PG+RYYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAV
Sbjct: 76 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 135
Query: 114 --------------------EKALPTNNARFDFLS------SGTTCYSRCLDYAR----- 142
+K + + F+ ++ +G Y R + AR
Sbjct: 136 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 195
Query: 143 -----------------FRQICDETDSIMFADMSHISGL-IAGV---------------- 168
R+I DE + + ADM+HISGL +AGV
Sbjct: 196 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 255
Query: 169 --------------KGV----TKTGEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAM 210
+GV KTG++ILY+ E IN+AVFP LQGGPHNHAI +A A+
Sbjct: 256 KTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVAL 315
Query: 211 LQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELV 270
QA + EFK YQ QV AN LS +++ GY +VTGG+D HLIL+DLR G + E V
Sbjct: 316 KQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKV 375
Query: 271 LEEIAIACNKNT---------------------------------------GISLAAEIQ 291
LE +IACNKNT GI L +IQ
Sbjct: 376 LEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQ 435
Query: 292 AISGPK--LVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
+GP+ L +F+ L +E + V AL++E+E ++ F +PG
Sbjct: 436 DDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 479
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/464 (37%), Positives = 232/464 (50%), Gaps = 132/464 (28%)
Query: 2 SSSTMLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEG 61
S ML L +D E+Y +IKKE +RQ G+ELIASENF S AVLE LGSCL NKYS G
Sbjct: 16 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLG 75
Query: 62 LPGKRYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVC-------- 113
PG+RYYGG + IDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAV
Sbjct: 76 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 135
Query: 114 --------------------EKALPTNNARFDFLS------SGTTCYSRCLDYAR----- 142
+K + + F+ ++ +G Y R + AR
Sbjct: 136 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 195
Query: 143 -----------------FRQICDETDSIMFADMSHISGLIA------------------- 166
R+I DE + + ADM+HISGL+
Sbjct: 196 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 255
Query: 167 ---------------GVKGV-TKTGEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAM 210
GV+ V KTG++ILY+ E IN+AVFP LQGGPHNHAI +A A+
Sbjct: 256 KTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVAL 315
Query: 211 LQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELV 270
QA + EFK YQ QV AN LS +++ GY +VTGG+D HLIL+DLR G + E V
Sbjct: 316 KQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKV 375
Query: 271 LEEIAIACNKNT---------------------------------------GISLAAEIQ 291
LE +IACNKNT GI L +IQ
Sbjct: 376 LEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQ 435
Query: 292 AISGPK--LVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
+GP+ L +F+ L +E + V AL++E+E ++ F +PG
Sbjct: 436 DDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 479
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 180/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 180/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 179/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 180/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY++G PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 180/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T + L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 180/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NK++EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 179/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 179/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NK T
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKAT 342
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 179/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+RY GG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 179/343 (52%), Gaps = 75/343 (21%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L Q DP++++ I++E+ RQ IELIASENF S AV+E GS L NKY+EG PG+R YGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGG 63
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A++R+ + F + NVQP+SG+ AN AV L
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 118 --------PTN--NARFDFLSSGT----------------------------TCYSRCLD 139
P N +++F++ G + Y R +D
Sbjct: 120 GGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIID 179
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + + DM+HI+GL+A VT T K L
Sbjct: 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+ ++I+ A+FP +QGGP H I A A A +A D+FK+Y +V NA L+ +
Sbjct: 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE 299
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+L+DLR +LTG E VL+E+ I NKNT
Sbjct: 300 GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 177/357 (49%), Gaps = 77/357 (21%)
Query: 10 TLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYG 69
+LA+ D + I KE RQ + +ELIASEN S AVL+ GS L NKY+EG PGKRYYG
Sbjct: 12 SLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYG 71
Query: 70 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV----------------- 112
G +F DE+E +A +R + FN NVQP+SG+ AN AV
Sbjct: 72 GCEFADEVEALAIERVKRLFN----AGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLD 127
Query: 113 -----CEKALPTNNARF-----------------------------DFLSSGTTCYSRCL 138
A P + ++ + +G + Y R L
Sbjct: 128 AGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKL 187
Query: 139 DYARFRQICDETDSIMFADMSHISGLIAGVKG---------VTKTGEK---------ILY 180
D+ARFR I D + + DM+HI+G+IA + VT T K +L
Sbjct: 188 DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLT 247
Query: 181 DYEE---KINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMI 237
+ EE KIN+AVFP LQGGP H I A A +A +D+FK+Y +V ANA L D +
Sbjct: 248 NDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLK 307
Query: 238 KRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTGISLAAEIQAIS 294
G +VTGGTD HL+L+DLR L G++VE LE I CNKN GI E I+
Sbjct: 308 AGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKN-GIPFDPEKPTIT 363
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 162/341 (47%), Gaps = 76/341 (22%)
Query: 13 QTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGGNQ 72
+ D L+ LI E+ RQ G+ELIASENF S V E +GS L NKY+EG PG RYYGG +
Sbjct: 6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCE 65
Query: 73 FIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKALP-------------- 118
ID +E +A +R+ F W NVQP+SGS AN AV +
Sbjct: 66 VIDRVESLAIERAKALFG---AAW-ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGG 121
Query: 119 --TNNARFDF-----------------------------------LSSGTTCYSRCLDYA 141
T+ +R +F + +G + Y R D+
Sbjct: 122 HLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFK 181
Query: 142 RFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY------------ 180
FR+I DE + + DM+H +GL+A VT T K L
Sbjct: 182 AFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDP 241
Query: 181 DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKRG 240
+ ++I+ +FP +QGGP H I A A +A EFK Y V NA L++E+ +RG
Sbjct: 242 ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG 301
Query: 241 YHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKN 281
Y +VTGGTD HL L+DLR LTG + E L+ + I NKN
Sbjct: 302 YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKN 342
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 173/344 (50%), Gaps = 76/344 (22%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
+ + D + I++E RQ + IELIASENF S AV+E GS L NKY+EG PG+RYYGG
Sbjct: 7 ITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGG 66
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKALP------------ 118
+F+D E +A R+ F + NVQP+SG AN AV AL
Sbjct: 67 CEFVDVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSH 122
Query: 119 ----TNNARFDF-----------------------------------LSSGTTCYSRCLD 139
T+ A +F + +G + YSR +D
Sbjct: 123 GGHLTHGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTID 182
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+ +F++I DE ++ + DM+HI+GL+A VT T K L
Sbjct: 183 FKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCK 242
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKR 239
+Y++ I+ +FP +QGGP H I A A A +A + FK+YQ QV NA L++ +I
Sbjct: 243 EEYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINE 302
Query: 240 GYHVVTGGTDVHLILIDLRKN-KLTGSKVELVLEEIAIACNKNT 282
G+ +V+GGTD HL+ +D++ + LTG + E L+ + I CNKNT
Sbjct: 303 GFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNT 346
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 172/348 (49%), Gaps = 83/348 (23%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
+A D EL+ +++EK RQ IELIASEN+TS V++ GS L NKY+EG PGKRYYGG
Sbjct: 8 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGG 67
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A R+ + F D NVQP+SGS ANFAV L
Sbjct: 68 CEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 123
Query: 118 --------PTN---------------NARFDF--------------LSSGTTCYSRCLDY 140
P N D+ + G + YS +D+
Sbjct: 124 GGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDW 183
Query: 141 ARFRQICDETDSIMFADMSHISGLIA-----------------------GVKG---VTKT 174
A+ R+I D + +F DM+H++GL+A G +G + K
Sbjct: 184 AKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG 243
Query: 175 GEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSD 234
G + LY +K+N+AVFP QGGP H I A A+ +A EFK+YQ QV NA + +
Sbjct: 244 GSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300
Query: 235 EMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
++RGY VV+GGTD HL L+DL LTG + + L I NKN+
Sbjct: 301 VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNS 348
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 172/348 (49%), Gaps = 83/348 (23%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
+A D EL+ +++EK RQ IELIASEN+TS V++ GS L NKY+EG PGKRY+GG
Sbjct: 8 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGG 67
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A R+ + F D NVQP+SGS ANFAV L
Sbjct: 68 CEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 123
Query: 118 --------PTN---------------NARFDF--------------LSSGTTCYSRCLDY 140
P N D+ + G + YS +D+
Sbjct: 124 GGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDW 183
Query: 141 ARFRQICDETDSIMFADMSHISGLIA-----------------------GVKG---VTKT 174
A+ R+I D + +F DM+H++GL+A G +G + K
Sbjct: 184 AKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG 243
Query: 175 GEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSD 234
G + LY +K+N+AVFP QGGP H I A A+ +A EFK+YQ QV NA + +
Sbjct: 244 GSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300
Query: 235 EMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
++RGY VV+GGTD HL L+DL LTG + + L I NKN+
Sbjct: 301 VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNS 348
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 172/348 (49%), Gaps = 83/348 (23%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
+A D EL+ +++EK RQ IELIASEN+TS V++ GS L NK++EG PGKRYYGG
Sbjct: 8 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYGG 67
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------- 117
+++D +E +A R+ + F D NVQP+SGS ANFAV L
Sbjct: 68 CEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 123
Query: 118 --------PTN---------------NARFDF--------------LSSGTTCYSRCLDY 140
P N D+ + G + YS +D+
Sbjct: 124 GGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDW 183
Query: 141 ARFRQICDETDSIMFADMSHISGLIA-----------------------GVKG---VTKT 174
A+ R+I D + +F DM+H++GL+A G +G + K
Sbjct: 184 AKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG 243
Query: 175 GEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSD 234
G + LY +K+N+AVFP QGGP H I A A+ +A EFK+YQ QV NA + +
Sbjct: 244 GSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE 300
Query: 235 EMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
++RGY VV+GGTD HL L+DL LTG + + L I NKN+
Sbjct: 301 VFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNS 348
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 170/349 (48%), Gaps = 83/349 (23%)
Query: 10 TLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYG 69
+A D EL+ ++EK RQ IELIASEN+TS V + GS L NKY+EG PGKRYYG
Sbjct: 10 NIADYDAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYG 69
Query: 70 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKAL------------ 117
G +++D +E +A R+ + F D NVQP+SGS ANFAV L
Sbjct: 70 GCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLA 125
Query: 118 ---------PTN---------------NARFDF--------------LSSGTTCYSRCLD 139
P N + + D+ + G + YS +D
Sbjct: 126 QGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEXAKLAKEHKPKXIIGGFSAYSGVVD 185
Query: 140 YARFRQICDETDSIMFADMSHISGLIA-----------------------GVKG---VTK 173
+A+ R+I D + +F D +H++GLIA G +G + K
Sbjct: 186 WAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAK 245
Query: 174 TGEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLS 233
G++ LY +K+N+AVFPS QGGP H I A A+ +A EFK YQ QV NA
Sbjct: 246 GGDEELY---KKLNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQQQVAKNAKAXV 302
Query: 234 DEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
+ + RGY VV+GGT+ HL L+DL LTG + + L I NKN+
Sbjct: 303 EVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNS 351
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/347 (33%), Positives = 165/347 (47%), Gaps = 80/347 (23%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
LA+ DP++ L+ KE RQ + +E+IASENF AVL+ GS L NKY+EGLPG+RYYGG
Sbjct: 26 LAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGG 85
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKALP------------ 118
+ +D +E +A+ R+ F + NVQP+SG+ AN AV +
Sbjct: 86 CEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLGLDLAN 141
Query: 119 ----TNNARFDF-----------------------------------LSSGTTCYSRCLD 139
T+ R +F + +G + Y R LD
Sbjct: 142 GGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLD 201
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG----------------VKGVTKTGEKILY--- 180
+A FR I DE + + DM+H +GL+A V G L
Sbjct: 202 FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSGLIVGK 261
Query: 181 -DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMI-- 237
Y + IN+AVFP QGGP H I A A+ A + EF Q + + A ++D ++
Sbjct: 262 QQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321
Query: 238 ---KRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKN 281
K G VV+GGTDVHL+L+DLR + L G E +L E+ I N+N
Sbjct: 322 DVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRN 368
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 164/344 (47%), Gaps = 75/344 (21%)
Query: 10 TLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYG 69
+L D E++ L KE RQ G+E IASENFT V E GS L NKY+EG PGKRYYG
Sbjct: 5 SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 70 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV-------CEKALPTN-- 120
G +F+DEIE +A +R K FN NVQP SGS AN V +K L +
Sbjct: 65 GCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGXDLS 120
Query: 121 ---------------------------NARFDF--------------LSSGTTCYSRCLD 139
+ R D+ + G + Y+R +D
Sbjct: 121 HGGHLTHGAKVSSSGKXYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVID 180
Query: 140 YARFRQICDETDSIMFADMSHISGLIAG---------VKGVTKTGEKILY---------- 180
+A+FR+I DE + +FAD++HI+GL+ V+ T K L
Sbjct: 181 FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIXTN 240
Query: 181 --DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIK 238
+ +KIN+A+FP +QGGP H I A A SDE+K Y QV+ NA L++ +
Sbjct: 241 DEELAKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLXD 300
Query: 239 RGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
R + +V+ GTD HL+L + +G +L L I NKNT
Sbjct: 301 RKFKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNT 344
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 154/292 (52%), Gaps = 75/292 (25%)
Query: 116 ALPTNNARFDFLSSGTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIA--------- 166
AL R + +GT+ Y+R +DYAR R++CDE + + ADM+HISGL+A
Sbjct: 196 ALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK 255
Query: 167 -------------------------GVKGV-TKTGEKILYDYEEKINNAVFPSLQGGPHN 200
GVK V KTG +I Y +E++IN AVFPSLQGGPHN
Sbjct: 256 HADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHN 315
Query: 201 HAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKN 260
HAI A+A A+ QA + F+ Y QV NA ++D +++RGY +V+GGTD HL+L+DLR
Sbjct: 316 HAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPK 375
Query: 261 KLTGSKVELVLEEIAIACNKNT-------------------------------------- 282
L G++ E VLE ++I NKNT
Sbjct: 376 GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435
Query: 283 -GISLAAEIQAISGPKLVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
G+++ E+++ + KL DF++ L K+ + +++A L++ +E ++ F MPG
Sbjct: 436 EGVNIGLEVKSKTA-KLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPG 486
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 86/103 (83%)
Query: 10 TLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYG 69
+L+ +DPE++ L+++EK RQ G+ELIASENF S A LE LGSCL NKYSEG PGKRYYG
Sbjct: 34 SLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYG 93
Query: 70 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV 112
G + +DEIE++ Q+R+L+AF+LDP QWG NVQPYSGSPAN AV
Sbjct: 94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAV 136
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 152/314 (48%), Gaps = 78/314 (24%)
Query: 102 PYSGSPANFAVCEKALPTNNARF--DFLSSGTTCYSRCLDYARFRQICDETDSIMFADMS 159
PY P + L N + F + +GT+CYSR LDYAR R+I D+ + + AD +
Sbjct: 165 PYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLXADXA 224
Query: 160 HISGLIA----------------------------------GVKGV-TKTGEKILYDYEE 184
HISGL+A GV+ V KTG++ Y+ E
Sbjct: 225 HISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGXIFYRKGVRSVDPKTGKETYYELES 284
Query: 185 KINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVV 244
IN+AVFP LQGGPHNHAI +A A+ QA + EFK YQ QV AN LSD + + GY +V
Sbjct: 285 LINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEFKIYQLQVLANCRALSDALTELGYKIV 344
Query: 245 TGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT---------------------- 282
TGG+D HLIL DLR G + E VLE +IACNKNT
Sbjct: 345 TGGSDNHLILXDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTS 404
Query: 283 -----------------GISLAAEIQAISGPK--LVDFQTCLHKNEDIVKKVAALKKEIE 323
GI L +IQ+ K L +F+ L +E I VA L++E+E
Sbjct: 405 RGLLEEDFQKVAHFIHRGIELTLQIQSHXATKATLKEFKEKLAGDEKIQSAVATLREEVE 464
Query: 324 DYSNQFEMPGQADL 337
++++ F +PG D
Sbjct: 465 NFASNFSLPGLPDF 478
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 87/111 (78%)
Query: 2 SSSTMLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEG 61
S L L +D E+YS+IKKE +RQ G+ELIASENF S AVLE LGS L NKYSEG
Sbjct: 11 SHEKXLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEG 70
Query: 62 LPGKRYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV 112
PG+RYYGG +FIDE+E + Q+R+L+A++LDP+ WG NVQPYSGSPANFAV
Sbjct: 71 YPGQRYYGGTEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAV 121
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 152/310 (49%), Gaps = 79/310 (25%)
Query: 102 PYSGSPANFAVCEKALPTNNARF--DFLSSGTTCYSRCLDYARFRQICDETDSIMFADMS 159
PY +P + L N F + +GT+CYSR L+YAR R+I DE + + ADM+
Sbjct: 161 PYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMA 220
Query: 160 HISGLIA----------------------------------GVKGV-TKTGEKILYDYEE 184
HISGL+A GVK V TG++ILY+ E
Sbjct: 221 HISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPATGKEILYNLES 280
Query: 185 KINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVV 244
IN+AVFP LQGGPHNHAI +A A+ QA + EFK YQ QV AN LS+ + + GY +V
Sbjct: 281 LINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIV 340
Query: 245 TGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT---------------------- 282
TGG+D HLIL+DLR G + E VLE +IACNKNT
Sbjct: 341 TGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTS 400
Query: 283 -----------------GISLAAEIQAISG--PKLVDFQTCLHKNEDIVKKVAALKKEIE 323
GI L +IQ+ +G L +F+ L + V AL++E+E
Sbjct: 401 RGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATLKEFKERL-AGDKYQAAVQALREEVE 459
Query: 324 DYSNQFEMPG 333
+++ F +PG
Sbjct: 460 SFASLFPLPG 469
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 88/111 (79%)
Query: 2 SSSTMLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEG 61
S ML L +D E+Y++IKKE +RQ G+ELIASENF S AVLE LGSCL NKYSEG
Sbjct: 7 SHDAMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEG 66
Query: 62 LPGKRYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV 112
PG+RYYGG +FIDE+E + Q+R+L+A+ LDP+ WG NVQPYSGSPANFAV
Sbjct: 67 YPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAV 117
>pdb|2V7G|A Chain A, Crystal Structure Of An Engineered Urocanase Tetramer
pdb|2V7G|B Chain B, Crystal Structure Of An Engineered Urocanase Tetramer
pdb|2V7G|C Chain C, Crystal Structure Of An Engineered Urocanase Tetramer
pdb|2V7G|D Chain D, Crystal Structure Of An Engineered Urocanase Tetramer
Length = 557
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 217 EFKSYQAQVKANASHLSDEMIKRGYH--VVTGGTDVHLILIDLRKNKLTGSKVELVLEEI 274
E K+ + NA+ + E++KRG +VT T H L T + + I
Sbjct: 232 EGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPIGWTWEQYRDRAQTI 291
Query: 275 AIACNKNTGISLAAEIQAISGPKLVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
A K S+A +QA ++DFQ D + + KE E +N F+ PG
Sbjct: 292 PAAVVKAAKASMAVHVQA-----MLDFQKQGVPTFDYGNNIRQMAKE-EGVANAFDFPG 344
>pdb|1UWL|A Chain A, 1.76a Structure Of Urocanate Hydratase From Pseudomonas
Putida
pdb|1UWL|B Chain B, 1.76a Structure Of Urocanate Hydratase From Pseudomonas
Putida
Length = 557
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 217 EFKSYQAQVKANASHLSDEMIKRGYH--VVTGGTDVHLILIDLRKNKLTGSKVELVLEEI 274
E K+ + NA+ + E++KRG +VT T H L T + +
Sbjct: 232 EGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTE 291
Query: 275 AIACNKNTGISLAAEIQAISGPKLVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
A K S+A +QA ++DFQ D + + KE E +N F+ PG
Sbjct: 292 PAAVVKAAKQSMAVHVQA-----MLDFQKQGVPTFDYGNNIRQMAKE-EGVANAFDFPG 344
>pdb|1W1U|A Chain A, Inactive Urocanase-Sa Cocrystallized With Urocanate
pdb|1W1U|B Chain B, Inactive Urocanase-Sa Cocrystallized With Urocanate
Length = 557
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 217 EFKSYQAQVKANASHLSDEMIKRGYH--VVTGGTDVHLILIDLRKNKLTGSKVELVLEEI 274
E K+ + NA+ + E++KRG +VT T H L T + +
Sbjct: 232 EGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTE 291
Query: 275 AIACNKNTGISLAAEIQAISGPKLVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
A K S+A +QA ++DFQ D + + KE E +N F+ PG
Sbjct: 292 PAAVVKAAKQSMAVHVQA-----MLDFQKQGVPTFDYGNNIRQMAKE-EGVANAFDFPG 344
>pdb|1S68|A Chain A, Structure And Mechanism Of Rna Ligase
Length = 249
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 218 FKSYQAQVKANASHLSDEMIKRGYHV-VTGGTDVHLILIDLRKNKLTGSKVELVLEEIAI 276
FK Y + +H + + I++ Y + +TGG V + K+ G+ L++E +
Sbjct: 2 FKKYSSL----ENHYNSKFIEKLYSLGLTGGEWV-------AREKIHGTNFSLIIERDKV 50
Query: 277 ACNKNTGISLAAE 289
C K TG L AE
Sbjct: 51 TCAKRTGPILPAE 63
>pdb|2HVR|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVR|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVS|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
pdb|2HVS|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
Length = 335
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 218 FKSYQAQVKANASHLSDEMIKRGYHV-VTGGTDVHLILIDLRKNKLTGSKVELVLEEIAI 276
FK Y + +H + + I++ Y + +TGG V + K+ G+ L++E +
Sbjct: 3 FKKYSSL----ENHYNSKFIEKLYSLGLTGGEWVA-------REKIHGTNFSLIIERDKV 51
Query: 277 ACNKNTGISLAAE 289
C K TG L AE
Sbjct: 52 TCAKRTGPILPAE 64
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 107 PANFAVCEKALPTNNARFDFLSSGTTCYSRCLDYARFRQICDETDSIMFAD 157
PA+ E AL F S T + RC+D ++C E +++ D
Sbjct: 186 PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID 236
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTG 283
G VV D + +++ +KNKLT SK+ V+E+ I C +G
Sbjct: 568 GARVVLVAVDKGVFVLN-KKNKLTQSKIWDVVEKADIGCTPGSG 610
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTG 283
G VV D + +++ +KNKLT SK+ V+E+ I C +G
Sbjct: 568 GARVVLVAVDKGVFVLN-KKNKLTQSKIWDVVEKADIGCTPGSG 610
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTG 283
G VV D + +++ +KNKLT SK+ V+E+ I C +G
Sbjct: 568 GARVVLVAVDKGVFVLN-KKNKLTQSKIWDVVEKADIGCTPGSG 610
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTG 283
G VV D + +++ +KNKLT SK+ V+E+ I C +G
Sbjct: 568 GARVVLVAVDKGVFVLN-KKNKLTQSKIWDVVEKADIGCTPGSG 610
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTG 283
G VV D + +++ +KNKLT SK+ V+E+ I C +G
Sbjct: 568 GARVVLVAVDKGVFVLN-KKNKLTQSKIWDVVEKADIGCTPGSG 610
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 GYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNTG 283
G VV D + +++ +KNKLT SK+ V+E+ I C +G
Sbjct: 568 GARVVLVAVDKGVFVLN-KKNKLTQSKIWDVVEKADIGCTPGSG 610
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,135,219
Number of Sequences: 62578
Number of extensions: 410338
Number of successful extensions: 1025
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 80
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)