RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10669
(337 letters)
>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional.
Length = 475
Score = 408 bits (1050), Expect = e-141
Identities = 176/456 (38%), Positives = 231/456 (50%), Gaps = 130/456 (28%)
Query: 7 LHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKR 66
+ L + DPE+ +I+KEK RQ G+ELIASENFTS AV+E LGSCL NKYSEGLPG R
Sbjct: 11 GNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGAR 70
Query: 67 YYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAVCEKALPTNN--ARF 124
YYGGN++ID+IE + Q+R+L+AF LDPE+WG NVQP SGSPANFAV L ++
Sbjct: 71 YYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGL 130
Query: 125 DFLS---------------SGTTCYSRCLDY------------------ARFR------- 144
D S T+ Y + Y FR
Sbjct: 131 DLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG 190
Query: 145 --------------QICDETDSIMFADMSHISGLIA------------------------ 166
+I D+ +++ DM+HISGL+A
Sbjct: 191 ASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRG 250
Query: 167 ----------GVKGVTKTGEKILYDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSD 216
G K GE +YDYE+KIN AVFP LQGGPHNH I A+A A+ QA +
Sbjct: 251 PRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP 310
Query: 217 EFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAI 276
EFK+YQ QVKANA+ L++ ++ +GY +VTGGTD HL+L DLR LTGS+VE VL+ I
Sbjct: 311 EFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHI 370
Query: 277 ACNKNT---------------------------------------GISLAAEIQAISGPK 297
NKN +++A +IQ G K
Sbjct: 371 TLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQKEHGKK 430
Query: 298 LVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
L DF+ L ++ D K + AL+ E+E+++ F MPG
Sbjct: 431 LKDFKKGL-ESNDFSKDIEALRAEVEEFATSFPMPG 465
>gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase.
Length = 380
Score = 334 bits (858), Expect = e-113
Identities = 148/346 (42%), Positives = 189/346 (54%), Gaps = 78/346 (22%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L+ +DPE++ +IKKEK RQ GIELIASENFTS AV+E LGS L NKY+EG PGKRYYGG
Sbjct: 1 LSDSDPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGG 60
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYS-------------------------- 104
+++DE+E +AQ R+ + F LD G NVQP S
Sbjct: 61 CEYVDEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPH 116
Query: 105 ------GSPAN-----FAVCEKALPTNNARFDF--------------LSSGTTCYSRCLD 139
G P N F + + D+ + +GT+ YSR +D
Sbjct: 117 GGHLTHGYPVNFSGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAYSRLID 176
Query: 140 YARFRQICDETDSIMFADMSHISGLIA-GVKG--------VTKTGEK------------- 177
YARFR+I DE + + DM+HI+GL+A GV VT T K
Sbjct: 177 YARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGGMIFFR 236
Query: 178 -ILYDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEM 236
ILY+ E+KIN+AVFP LQGGP NH I A A A+ QA + EFK YQ QV NA L++ +
Sbjct: 237 EILYELEKKINSAVFPGLQGGPLNHVIAAKAVALKQALTPEFKVYQQQVLKNAKALAEAL 296
Query: 237 IKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
+RGY +V+GGTD HL+L+DLR L G + E LE I NKNT
Sbjct: 297 KERGYKLVSGGTDNHLVLVDLRPKGLDGKRAEKALERANITANKNT 342
>gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 306 bits (787), Expect = e-102
Identities = 133/355 (37%), Positives = 174/355 (49%), Gaps = 88/355 (24%)
Query: 6 MLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGK 65
LA+ DPE+ I++E RQ IELIASENF S AV+E GS L NKY+EG PGK
Sbjct: 1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGK 60
Query: 66 RYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYS--------------------- 104
RYYGG +++D +E +A R+ + F + NVQP+S
Sbjct: 61 RYYGGCEYVDVVEQLAIDRAKELFGAE----YANVQPHSGSQANAAVYFALLKPGDTILG 116
Query: 105 -----------GSPANF----------------------AVCEKAL---PTNNARFDFLS 128
GSP NF V + AL P +
Sbjct: 117 MDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKP------KLII 170
Query: 129 SGTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIAG------VKG---VTKTGEK-- 177
+G + YSR +D+ RFR+I DE + + DM+HI+GL+A V VT T K
Sbjct: 171 AGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTL 230
Query: 178 -------ILY---DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKA 227
IL + +KIN+AVFP +QGGP H I A A A +A EFK Y QV
Sbjct: 231 RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVK 290
Query: 228 NASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
NA L++ + +RG+ VV+GGTD HL+L+DLR LTG + E LEE I NKN
Sbjct: 291 NAKALAEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNA 345
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 304 bits (780), Expect = e-101
Identities = 138/351 (39%), Positives = 180/351 (51%), Gaps = 80/351 (22%)
Query: 6 MLHGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGK 65
+ +LA DPE++ I++E RQ IELIASENFTS AV+E GS L NKY+EG PGK
Sbjct: 2 RSYASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGK 61
Query: 66 RYYGGNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSG-------------------- 105
RYYGG +++DE+E +A +R+ K F + NVQP+SG
Sbjct: 62 RYYGGCEYVDEVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIMG 117
Query: 106 ------------SPANFA-----VCEKALPTNNARFDF--------------LSSGTTCY 134
SP NF+ V + D+ + +G + Y
Sbjct: 118 LDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAY 177
Query: 135 SRCLDYARFRQICDETDSIMFADMSHISGLIAGVKG-----------VTKTGEK------ 177
SR +D+ RFR+I DE + + DM+H++GLIAG G VT T K
Sbjct: 178 SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAG--GVHPNPLPHADVVTTTTHKTLRGPR 235
Query: 178 ---ILYDYEE---KINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASH 231
IL + EE KIN+AVFP LQGGP H I A A A +A EFK Y QV NA
Sbjct: 236 GGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKA 295
Query: 232 LSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
L++ + +RG+ VV+GGTD HL+L+DLR LTG K E LE I NKN
Sbjct: 296 LAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNA 346
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 236 bits (604), Expect = 2e-74
Identities = 102/268 (38%), Positives = 135/268 (50%), Gaps = 67/268 (25%)
Query: 130 GTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIAGVKG---------VTKTGEKIL- 179
G + Y R +DY RFR+ICD + + AD++H SGL+A VT T K L
Sbjct: 189 GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLR 248
Query: 180 --------------YDYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQV 225
D E KIN AVFP LQGGPHNH I AIA + + QS E+K Y QV
Sbjct: 249 GPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQV 308
Query: 226 KANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT--- 282
NA L+ + KRGY +VTGGTD HL+L+DLR +TGSK+E +L+ + I+ NKNT
Sbjct: 309 LKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPG 368
Query: 283 ------------------------------------GISLAAEIQAISGPKLVDFQTCLH 306
+ LA EIQ G KLVDF+ L
Sbjct: 369 DKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQVGKKLVDFKKALE 428
Query: 307 KNEDIVKKVAALKKEIEDYSNQFEMPGQ 334
KN ++ K L++E+ ++++QF PG
Sbjct: 429 KNPELQK----LRQEVVEFASQFPFPGI 452
Score = 207 bits (528), Expect = 3e-63
Identities = 76/103 (73%), Positives = 89/103 (86%)
Query: 10 TLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYG 69
+L + DPELY LI+KEK RQI G+ELIASENFTS AVLECLGSC NKY+EGLPG RYYG
Sbjct: 14 SLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYG 73
Query: 70 GNQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV 112
GN+ +D+IE + Q+R+L+AF LDPE+WG NVQPYSGSPANFAV
Sbjct: 74 GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAV 116
>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl group of N5,
N10-methylene tetrahydrofolate to glycine resulting in
the formation of serine and tetrahydrofolate. Both
eukaryotic and prokaryotic SHMT enzymes form tight
obligate homodimers; the mammalian enzyme forms a
homotetramer comprising four pyridoxal phosphate-bound
active sites.
Length = 402
Score = 197 bits (503), Expect = 6e-60
Identities = 77/174 (44%), Positives = 103/174 (59%), Gaps = 21/174 (12%)
Query: 130 GTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIAG------VKG---VTKTGEK--- 177
G + Y R +D+ RFR+I DE + + DM+H++GL+AG + G VT T K
Sbjct: 168 GASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLR 227
Query: 178 ------ILY---DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKAN 228
IL + +KIN+AVFP LQGGPH H I A A A+ +A EFK+Y QV N
Sbjct: 228 GPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVEN 287
Query: 229 ASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
A L++ + +RG+ VV+GGTD HL+L+DLR +TG E LEE I NKNT
Sbjct: 288 AKALAEALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNT 341
Score = 164 bits (418), Expect = 2e-47
Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 12 AQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGGN 71
A DPE+ +IKKE RQ +ELIASENFTS AV+E +GS L NKY+EG PGKRYYGG
Sbjct: 1 ADVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGC 60
Query: 72 QFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV 112
+++DEIE +A +R+ K F + NVQP+SGS AN AV
Sbjct: 61 EYVDEIEDLAIERAKKLFGAE----YANVQPHSGSQANLAV 97
>gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.
Length = 416
Score = 173 bits (440), Expect = 1e-50
Identities = 80/176 (45%), Positives = 102/176 (57%), Gaps = 25/176 (14%)
Query: 130 GTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIAGVKG-----------VTKTGEK- 177
G + Y R LD+ARFR+I DE +++ DM+HI+GL+A G VT T K
Sbjct: 175 GFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAA--GEHPNPFPHAHVVTTTTHKT 232
Query: 178 --------ILYDYEE---KINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVK 226
IL + EE KIN+AVFP LQGGP H I A A A +A EFK+Y QV
Sbjct: 233 LRGPRGGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVI 292
Query: 227 ANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
ANA L++ + +RGY +V+GGTD HL+L+DLR L+G E LE I NKNT
Sbjct: 293 ANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNT 348
Score = 134 bits (340), Expect = 3e-36
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 10/108 (9%)
Query: 8 HGTLAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRY 67
+L + D E+++ I KE RQ + +ELIASENFTS AV+E GS L NKY+EG PGKRY
Sbjct: 6 SDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRY 65
Query: 68 YGGNQFIDEIEIVAQQRSLKAFNLDPEQWGC---NVQPYSGSPANFAV 112
YGG +F+DE+E +A +R+ + F GC NVQP+SGS AN AV
Sbjct: 66 YGGCEFVDEVEALAIERAKQLF-------GCDYANVQPHSGSQANGAV 106
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 166 bits (422), Expect = 9e-47
Identities = 64/102 (62%), Positives = 79/102 (77%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
L + DP+++ L++KEK RQ GIELIASENF AV+E LGS L NKYSEG+PG RYY G
Sbjct: 129 LPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTG 188
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCNVQPYSGSPANFAV 112
NQ+ID+IE + +R+L AF LD E+WG NVQPYS + ANFAV
Sbjct: 189 NQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAV 230
Score = 159 bits (403), Expect = 3e-44
Identities = 105/299 (35%), Positives = 137/299 (45%), Gaps = 86/299 (28%)
Query: 114 EKALPTNNARFDFLSSGTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIAGVKG--- 170
EKAL + R L G + Y R DYARFRQI D+ +++ DM+HISGL+A +
Sbjct: 292 EKAL---DFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNP 348
Query: 171 ------VTKTGEKIL-------------------------------YDYEEKINNAVFPS 193
VT T K L YD+EEKIN AVFPS
Sbjct: 349 FDYCDIVTSTTHKSLRGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPS 408
Query: 194 LQGGPHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLI 253
LQGGPHN+ I A+A A+ Q + E+K+Y QVK NA L+ +++R +VTGGTD HL+
Sbjct: 409 LQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLL 468
Query: 254 LIDLRKNKLTGSKVELVLEEIAIACNK------NTGISL--------------------- 286
L DL LTG E V E I NK N IS
Sbjct: 469 LWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFE 528
Query: 287 --------AAEIQAI----SGPKLVDFQTCLHKNEDIVKKVAALKKEIEDYSNQFEMPG 333
AA+I + G +F L N+DIV+ L+ +E +++QF MPG
Sbjct: 529 TIADFLLRAAQIASAVQREHGKLQKEFLKGLQNNKDIVE----LRNRVEAFASQFAMPG 583
>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional.
Length = 493
Score = 120 bits (302), Expect = 2e-30
Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 127 LSSGTTCYSRCLDYARFRQICDETDSIMFADMSHISGLIAG--VKG----------VTKT 174
L +G + Y R +++A+ R+I DE +++ DM+H +GL+AG G VT T
Sbjct: 224 LVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTT 283
Query: 175 GEKILY-----------DYEEKINNAVFPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQA 223
K L +Y + ++ P + GGP H + A A A+ +A++ EF+ Y
Sbjct: 284 THKTLRGPRGGLVLAKKEYADAVDKGC-PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQ 342
Query: 224 QVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACNKNT 282
QV NA L++ +KRG +VTGGTD HL+LID+ LTG + E L + I N+N+
Sbjct: 343 QVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNS 401
Score = 80.5 bits (199), Expect = 9e-17
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 10/102 (9%)
Query: 11 LAQTDPELYSLIKKEKHRQINGIELIASENFTSLAVLECLGSCLQNKYSEGLPGKRYYGG 70
+ +P + I++E Q + ++LIASEN++SLAV +G+ L +KY+EG PG R+Y G
Sbjct: 30 ILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAG 89
Query: 71 NQFIDEIEIVAQQRSLKAFNLDPEQWGCN---VQPYSGSPAN 109
Q +D +E A + + + F G VQP+SG+ AN
Sbjct: 90 CQNVDTVEWEAAEHAKELF-------GAEHAYVQPHSGADAN 124
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 34.2 bits (78), Expect = 0.094
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 7 LHGTLAQTDPELYSLIKKE-KHRQINGIELIASENFTSLAVLECLGSCLQN--------- 56
L LA+ PEL + +E RQ++ +++IA VL C+ ++N
Sbjct: 605 LSAKLAKDHPELSEALCEEIMQRQLDAVDIIAQHQ-----VLTCMAPWIENLNFVQLKES 659
Query: 57 KYSEGLPGKRYY----GGNQFIDEIEIVAQQRSLKAFNLDP 93
+SE L YY G+QF DEIE + + K N+ P
Sbjct: 660 GWSERLLKSLYYVTWRHGDQFPDEIEKLWSTVASKWRNIVP 700
>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 30.2 bits (69), Expect = 1.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 242 HVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACN 279
H+ +G D+ +I+ R+ +LT K + +L EI N
Sbjct: 341 HMPSGIDDLSIII---RERQLTPKKEDEILAEIKQELN 375
>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup
contains atypical SDRs, some of which are identified as
putative NAD(P)-dependent epimerases, one as a putative
NAD-dependent epimerase/dehydratase. Atypical SDRs are
distinct from classical SDRs. Members of this subgroup
have a glycine-rich NAD(P)-binding motif that is very
similar to the extended SDRs, GXXGXXG, and binds NADP.
Generally, this subgroup has poor conservation of the
active site tetrad; however, individual sequences do
contain matches to the YXXXK active site motif, the
upstream Ser, and there is a highly conserved Asp in
place of the usual active site Asn throughout the
subgroup. Atypical SDRs generally lack the catalytic
residues characteristic of the SDRs, and their
glycine-rich NAD(P)-binding motif is often different
from the forms normally seen in classical or extended
SDRs. Atypical SDRs include biliverdin IX beta reductase
(BVR-B,aka flavin reductase), NMRa (a negative
transcriptional regulator of various fungi),
progesterone 5-beta-reductase like proteins,
phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 203
Score = 29.1 bits (66), Expect = 2.5
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 229 ASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELVL------EEIAIACNKNT 282
H+ E++ RGY V D + KL + E+V+ E +A A
Sbjct: 12 GRHVVRELLDRGYQVRALVRDPS------QAEKLEAAGAEVVVGDLTDAESLAAALEGID 65
Query: 283 GI--SLAAEIQAISGPKLVDFQ 302
+ + + + + VD+
Sbjct: 66 AVISAAGSGGKGGPRTEAVDYD 87
>gnl|CDD|219349 pfam07250, Glyoxal_oxid_N, Glyoxal oxidase N-terminus. This family
represents the N-terminus (approximately 300 residues)
of a number of plant and fungal glyoxal oxidase enzymes.
Glyoxal oxidase catalyzes the oxidation of aldehydes to
carboxylic acids, coupled with reduction of dioxygen to
hydrogen peroxide. It is an essential component of the
extracellular lignin degradation pathways of the
wood-rot fungus Phanerochaete chrysosporium.
Length = 243
Score = 29.0 bits (65), Expect = 3.4
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 178 ILYDYEEKINNAV---FPSLQGGPHNHAIGAIATAMLQAQSDEFKSYQAQV 225
IL+DY N V FP + GGP N+ + +L + A+V
Sbjct: 192 ILFDYR---KNTVVKEFPQIPGGPRNYPSSGSS-VLLPLDDRNPDNLTAEV 238
>gnl|CDD|153183 cd04911, ACT_AKiii-YclM-BS_1, ACT domains located C-terminal to the
catalytic domain of the lysine plus threonine-sensitive
aspartokinase isoenzyme AKIII. This CD includes the
first of two ACT domains located C-terminal to the
catalytic domain of the lysine plus threonine-sensitive
aspartokinase isoenzyme AKIII, a monofunctional class
enzyme found in Bacilli (Bacillus subtilis (BS) YclM)
and Clostridia species. Aspartokinase is the first
enzyme in the aspartate metabolic pathway and catalyzes
the conversion of aspartate and ATP to aspartylphosphate
and ADP. Bacillus subtilis YclM is reported to be a
single polypeptide of 50 kD. AKIII from Bacillus
subtilis strain 168 is induced by lysine and repressed
by threonine and it is synergistically inhibited by
lysine and threonine. Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 76
Score = 26.8 bits (60), Expect = 3.7
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 242 HVVTGGTDVHLILIDLRKNKLTGSKVELVLEEIAIACN 279
H+ +G D+ +I+ R N+LT K + +L EI +
Sbjct: 34 HMPSGIDDISIII---RDNQLTDEKEQKILAEIKEELH 68
>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 235
Score = 28.4 bits (64), Expect = 4.2
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 22/70 (31%)
Query: 155 FADMSHISGLIAGVKGVTKTGEK---------ILYDYEEKINNAVFPSLQGGPHNHAI-- 203
+M I+ +AG G T K + DY + G I
Sbjct: 122 IINMCSIASFVAGGGGAAYTASKHALAGFTKQLALDYAKD-----------GIQVFGIAP 170
Query: 204 GAIATAMLQA 213
GA+ T M A
Sbjct: 171 GAVKTPMTAA 180
>gnl|CDD|235467 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 28.2 bits (64), Expect = 5.6
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 274 IAIACNKNTGISLAAE--IQAISGPKLV 299
I I+CN + +S A+ I+ + GP+++
Sbjct: 162 IGISCNPGSPLSKEADIAIEVVVGPEVL 189
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 28.7 bits (64), Expect = 6.0
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 211 LQAQSDEFKSYQAQVKANASHLSDEMIKRGYHVVTGGTDVHLILIDLRKNKLTGSKVELV 270
L + D Y++++K S LS E+ K Y ++ R K+ V
Sbjct: 244 LSSLEDMKNRYESEIKTAESDLSMELEKNNY----------YKELEERHMKIINDPVYKN 293
Query: 271 LEEIAIACN-KNTGISLAAEIQAISGPKLVDFQTCLHKNEDIVKKVAALKKEIEDY 325
I KN + + I ++K I+KK++ L+K+ DY
Sbjct: 294 RNYINDYFKYKNDIENKKQILSNIDAE--------INKYHAIIKKLSVLQKDYNDY 341
>gnl|CDD|236392 PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated.
Length = 239
Score = 28.0 bits (63), Expect = 7.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 198 PHNHAIGAIATAMLQAQSDEFKSYQAQVKANASHLSDEM 236
PH+ AIATA L QAQ+ A H S +
Sbjct: 206 PHHALTDAIATAEL---------LQAQI---AHHFSPDT 232
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.381
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,034,689
Number of extensions: 1624176
Number of successful extensions: 1589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 39
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)